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ONTOLOGY REPORT - ANNOTATIONS


Term:DNA repair
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Accession:GO:0006281 term browser browse the term
Definition:The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
Synonyms:xref: Wikipedia:DNA_repair


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DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABRAXAS1 abraxas 1, BRCA1 A complex subunit IEA UniProt GO_REF:0000043 NCBI chr 8:135,002,297...135,021,205
Ensembl chr 8:135,002,320...135,021,197
JBrowse link
G ACTR8 actin related protein 8 IEA UniProt GO_REF:0000043 NCBI chr13:35,951,601...35,988,501
Ensembl chr13:35,910,692...35,996,831
JBrowse link
G ADPRS ADP-ribosylserine hydrolase IEA Ensembl GO_REF:0000107 NCBI chr 6:92,238,467...92,244,515
Ensembl chr 6:92,237,354...92,244,518
JBrowse link
G ALKBH1 alkB homolog 1, histone H2A dioxygenase ISO (PMID:18603530), (PMID:19959401) UniProtKB PMID:18603530, PMID:19959401 NCBI chr 7:100,676,778...100,710,414
Ensembl chr 7:100,676,629...100,710,788
JBrowse link
G ALKBH3 alkB homolog 3, alpha-ketoglutarate dependent dioxygenase ISO (PMID:16858410) UniProtKB PMID:16858410 NCBI chr 2:18,408,987...18,448,285
Ensembl chr 2:18,271,070...18,448,292
JBrowse link
G ANKLE1 ankyrin repeat and LEM domain containing 1 NOT ISO (MGI:MGI:5800654|PMID:27010503) UniProtKB PMID:27010503 MGI:MGI:5800654 NCBI chr 2:60,391,110...60,397,559
Ensembl chr 2:60,391,111...60,396,462
JBrowse link
G APEX1 apurinic/apyrimidinic endodeoxyribonuclease 1 ISO (PMID:9560228) UniProtKB PMID:9560228 NCBI chr 7:78,451,845...78,454,938
Ensembl chr 7:78,451,851...78,454,938
JBrowse link
G APEX2 apurinic/apyrimidinic endodeoxyribonuclease 2 IEA UniProt GO_REF:0000043 NCBI chr  X:47,862,682...47,870,579
Ensembl chr  X:47,862,667...47,885,840
JBrowse link
G APITD1 apoptosis-inducing, TAF9-like domain 1 IEA Ensembl GO_REF:0000107 NCBI chr 6:70,700,802...70,711,719
Ensembl chr 6:70,701,694...70,711,717
JBrowse link
G APTX aprataxin IEA UniProt GO_REF:0000043 NCBI chr10:33,470,089...33,495,584
Ensembl chr10:33,445,168...33,771,582
JBrowse link
G ASF1A anti-silencing function 1A histone chaperone IEA Ensembl GO_REF:0000107 NCBI chr 1:43,200,339...43,215,019
Ensembl chr 1:43,200,414...43,214,913
JBrowse link
G ATM ATM serine/threonine kinase IEA InterPro GO_REF:0000002 NCBI chr 9:36,620,656...36,759,555
Ensembl chr 9:36,620,658...36,759,554
JBrowse link
G ATR ATR serine/threonine kinase IEA UniProt GO_REF:0000043 NCBI chr13:83,175,515...83,289,986
Ensembl chr13:83,174,824...83,289,923
JBrowse link
G ATRIP ATR interacting protein IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:31,159,849...31,178,716
Ensembl chr13:31,159,843...31,179,098
JBrowse link
G ATRX ATRX chromatin remodeler IEA UniProt GO_REF:0000043 NCBI chr  X:61,584,028...61,872,341
Ensembl chr  X:61,584,848...61,872,288
JBrowse link
G BACH1 BTB domain and CNC homolog 1 IEA Ensembl GO_REF:0000107 NCBI chr13:192,656,289...192,697,536
Ensembl chr13:192,656,322...192,697,537
JBrowse link
G BCCIP BRCA2 and CDKN1A interacting protein IEA UniProt GO_REF:0000043 NCBI chr14:135,131,328...135,143,313
Ensembl chr14:135,129,360...135,154,234
JBrowse link
G BLM BLM RecQ like helicase IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 7:53,317,515...53,412,649
Ensembl chr 7:53,317,540...53,412,647
JBrowse link
G BRCA1 BRCA1 DNA repair associated IEA InterPro
UniProt
GO_REF:0000002, GO_REF:0000043 NCBI chr12:19,788,087...19,854,515
Ensembl chr12:19,786,020...19,855,570
JBrowse link
G BRCC3 BRCA1/BRCA2-containing complex subunit 3 IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr  X:125,383,392...125,439,082
Ensembl chr  X:125,383,414...125,439,082
JBrowse link
G CENPX centromere protein X IEA UniProt GO_REF:0000043 NCBI chr12:991,618...994,849 JBrowse link
G CGAS cyclic GMP-AMP synthase IEA UniProt GO_REF:0000043 NCBI chr 1:92,483,253...92,500,376
Ensembl chr 1:92,483,327...92,504,327
JBrowse link
G CHAF1A chromatin assembly factor 1 subunit A IEA UniProt GO_REF:0000043 NCBI chr 2:74,380,706...74,411,875
Ensembl chr 2:74,380,708...74,411,825
JBrowse link
G CHD1L chromodomain helicase DNA binding protein 1 like IEA InterPro GO_REF:0000002 NCBI chr 4:100,264,963...100,425,728
Ensembl chr 4:100,264,967...100,436,529
JBrowse link
G CHDH choline dehydrogenase IEA UniProt GO_REF:0000043 NCBI chr13:35,910,688...35,950,438
Ensembl chr13:35,910,696...35,948,259
JBrowse link
G CHEK1 checkpoint kinase 1 IEA Ensembl GO_REF:0000107 NCBI chr 9:52,759,224...52,790,878
Ensembl chr 9:52,726,885...52,790,706
JBrowse link
G CHRNA4 cholinergic receptor nicotinic alpha 4 subunit IEA Ensembl GO_REF:0000107 NCBI chr17:62,424,672...62,436,646
Ensembl chr17:62,420,546...62,436,165
JBrowse link
G DDB2 damage specific DNA binding protein 2 IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 2:15,342,614...15,370,623
Ensembl chr 2:15,337,743...15,383,116
JBrowse link
G DMAP1 DNA methyltransferase 1 associated protein 1 IEA InterPro GO_REF:0000002 NCBI chr 6:167,083,053...167,091,654
Ensembl chr 6:167,082,846...167,091,630
JBrowse link
G DMC1 DNA meiotic recombinase 1 IEA InterPro GO_REF:0000002 NCBI chr 5:9,431,236...9,470,333
Ensembl chr 5:9,431,307...9,470,549
JBrowse link
G DOT1L DOT1 like histone lysine methyltransferase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:76,339,452...76,401,974
Ensembl chr 2:76,339,470...76,401,966
JBrowse link
G EEPD1 endonuclease/exonuclease/phosphatase family domain containing 1 IEA InterPro GO_REF:0000002 NCBI chr18:37,824,450...37,948,855
Ensembl chr18:37,817,289...37,948,659
JBrowse link
G ENDOV endonuclease V IEA InterPro GO_REF:0000002 Ensembl chr12:2,076,491...2,098,762 JBrowse link
G ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit ISO (PMID:25538220)
(MGI:MGI:2446381|PMID:12466203)
MGI PMID:12466203, PMID:25538220 MGI:MGI:2446381 NCBI chr 6:51,783,537...51,808,898 JBrowse link
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit ISO (MGI:MGI:2179786|PMID:11950998) MGI PMID:11950998 MGI:MGI:2179786 NCBI chr 6:51,734,318...51,757,508
Ensembl chr 6:51,734,319...51,779,624
JBrowse link
G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit ISO (PMID:2167179) UniProtKB PMID:2167179 NCBI chr15:25,189,644...25,224,381
Ensembl chr15:25,189,663...25,228,066
JBrowse link
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit ISO (PMID:19596235)
(PMID:17055345)
(MGI:MGI:3027419|PMID:14729965)
UniProtKB
BHF-UCL
MGI
PMID:14729965, PMID:17055345, PMID:19596235 MGI:MGI:3027419 NCBI chr 3:29,266,234...29,306,109
Ensembl chr 3:29,266,236...29,306,116
JBrowse link
G ERCC5 ERCC excision repair 5, endonuclease ISO (MGI:MGI:3041918|PMID:15082767) MGI PMID:15082767 MGI:MGI:3041918 NCBI chr11:71,141,823...71,168,326
Ensembl chr11:71,141,798...71,168,321
JBrowse link
G ERCC6 ERCC excision repair 6, chromatin remodeling factor ISO (PMID:26218421)
(MGI:MGI:1861042|PMID:10806208)
(MGI:MGI:3715683|PMID:17213818), (MGI:MGI:3759387|PMID:12447686)
UniProt
MGI
PMID:10806208, PMID:12447686, PMID:17213818, PMID:26218421 MGI:MGI:1861042, MGI:MGI:3715683, MGI:MGI:3759387 NCBI chr14:89,998,125...90,075,911
Ensembl chr14:90,002,024...90,075,898
JBrowse link
G EYA1 EYA transcriptional coactivator and phosphatase 1 IEA UniProt GO_REF:0000043 NCBI chr 4:63,970,939...64,328,107
Ensembl chr 4:63,970,511...64,328,105
JBrowse link
G EYA2 EYA transcriptional coactivator and phosphatase 2 IEA UniProt GO_REF:0000043 NCBI chr17:48,930,682...49,243,789
Ensembl chr17:48,966,814...49,243,747
JBrowse link
G EYA3 EYA transcriptional coactivator and phosphatase 3 IEA UniProt GO_REF:0000043 NCBI chr 6:85,095,409...85,185,856
Ensembl chr 6:85,095,409...85,185,799
JBrowse link
G EYA4 EYA transcriptional coactivator and phosphatase 4 IEA UniProt GO_REF:0000043 NCBI chr 1:30,260,784...30,575,593
Ensembl chr 1:30,261,909...30,575,559
JBrowse link
G FAN1 FANCD2 and FANCI associated nuclease 1 ISO (PMID:20603073) UniProtKB PMID:20603073 NCBI chr 1:143,919,695...143,961,678
Ensembl chr 1:143,913,550...143,961,664
JBrowse link
G FANCD2 FA complementation group D2 IEA InterPro GO_REF:0000002 NCBI chr13:66,241,951...66,308,601
Ensembl chr13:66,241,673...66,310,436
JBrowse link
G FANCI FA complementation group I IEA InterPro GO_REF:0000002 NCBI chr 7:54,811,024...54,889,992
Ensembl chr 7:54,744,742...54,890,997
JBrowse link
G FANCL FA complementation group L IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:83,136,355...83,436,948
Ensembl chr 3:83,337,208...83,436,944
JBrowse link
G FBH1 F-box DNA helicase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:65,060,714...65,108,975
Ensembl chr10:64,955,189...65,108,380
JBrowse link
G FEN1 flap structure-specific endonuclease 1 ISO (MGI:MGI:2668283|PMID:12861020) MGI PMID:12861020 MGI:MGI:2668283 NCBI chr 2:9,752,004...9,756,863
Ensembl chr 2:9,752,751...9,753,893
JBrowse link
G FH fumarate hydratase IEA UniProt GO_REF:0000043 NCBI chr10:12,404,143...12,431,843
Ensembl chr10:12,404,176...12,431,801
JBrowse link
G GEN1 GEN1 Holliday junction 5' flap endonuclease IEA UniProt GO_REF:0000043 NCBI chr 3:120,067,792...120,097,305
Ensembl chr 3:120,065,973...120,097,069
JBrowse link
G GTF2H1 general transcription factor IIH subunit 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:40,857,720...40,900,591
Ensembl chr 2:40,857,723...40,901,123
JBrowse link
G HDAC9 histone deacetylase 9 ISO (MGI:MGI:5139938|PMID:21746928) MGI PMID:21746928 MGI:MGI:5139938 NCBI chr 9:87,164,400...88,192,803
Ensembl chr 9:87,449,359...88,186,965
JBrowse link
G HINFP histone H4 transcription factor IEA Ensembl GO_REF:0000107 NCBI chr 9:46,336,130...46,354,623
Ensembl chr 9:46,336,155...46,380,544
JBrowse link
G HUWE1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 IEA UniProt GO_REF:0000043 NCBI chr  X:46,281,958...46,444,315
Ensembl chr  X:46,282,415...46,441,623
JBrowse link
G INIP INTS3 and NABP interacting protein IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:253,375,193...253,393,886
Ensembl chr 1:253,375,199...253,393,852
JBrowse link
G INO80 INO80 complex ATPase subunit IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000043 NCBI chr 1:130,201,705...130,341,627
Ensembl chr 1:130,201,718...130,342,840
JBrowse link
G INTS3 integrator complex subunit 3 IEA Ensembl GO_REF:0000107 NCBI chr 4:95,904,072...95,944,805
Ensembl chr 4:95,898,787...95,944,809
JBrowse link
G KIF22 kinesin family member 22 IEA InterPro GO_REF:0000002 NCBI chr 3:18,023,104...18,041,732
Ensembl chr 3:18,023,093...18,041,887
JBrowse link
G KMT5B lysine methyltransferase 5B IEA Ensembl GO_REF:0000107 NCBI chr 2:4,710,510...4,768,237
Ensembl chr 2:4,710,769...4,766,005
JBrowse link
G KMT5C lysine methyltransferase 5C IEA Ensembl GO_REF:0000107 NCBI chr 6:59,517,058...59,524,551
Ensembl chr 6:59,517,058...59,525,434
JBrowse link
G LIG1 DNA ligase 1 NOT ISO (MGI:MGI:2178155|PMID:11896201)
(MGI:MGI:4943978|PMID:21390131)
RGD
MGI
PMID:1730240, PMID:11896201, PMID:21390131 MGI:MGI:2178155, MGI:MGI:4943978, RGD:724410 NCBI chr 6:53,620,483...53,660,020
Ensembl chr 6:53,620,483...53,686,562
JBrowse link
G LIG4 DNA ligase 4 ISO (MGI:MGI:4943978|PMID:21390131)
(MGI:MGI:3037169|PMID:11779495)
MGI PMID:11779495, PMID:21390131 MGI:MGI:3037169, MGI:MGI:4943978 NCBI chr11:75,537,027...75,547,711
Ensembl chr11:75,537,032...75,547,691
JBrowse link
G LOC100522201 histone H2AX ISO (MGI:MGI:3053255|PMID:15364958)
(MGI:MGI:2179182|PMID:11934988)
MGI PMID:11934988, PMID:15364958 MGI:MGI:2179182, MGI:MGI:3053255 NCBI chr 9:46,308,824...46,310,494
Ensembl chr 9:46,309,653...46,310,084
JBrowse link
G MBD4 methyl-CpG binding domain 4, DNA glycosylase IEA UniProt GO_REF:0000043 NCBI chr13:68,816,677...68,828,559
Ensembl chr13:68,814,823...68,828,580
JBrowse link
G MCPH1 microcephalin 1 IEA InterPro GO_REF:0000002 NCBI chr15:37,455,186...37,674,971
Ensembl chr15:37,455,526...37,673,663
JBrowse link
G MDC1 mediator of DNA damage checkpoint 1 IEA UniProt GO_REF:0000043 NCBI chr 7:23,229,508...23,247,739
Ensembl chr 7:23,229,508...23,247,641
JBrowse link
G MGMT O-6-methylguanine-DNA methyltransferase IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000043 NCBI chr14:138,502,005...138,771,543
Ensembl chr14:138,499,161...138,779,938
JBrowse link
G MLH1 mutL homolog 1 ISO (MGI:MGI:2677087|PMID:13679151)
(MGI:MGI:3513725|PMID:15480418)
MGI PMID:13679151, PMID:15480418 MGI:MGI:2677087, MGI:MGI:3513725 NCBI chr13:21,791,276...21,877,789
Ensembl chr13:21,791,201...21,877,757
JBrowse link
G MMS19 MMS19 homolog, cytosolic iron-sulfur assembly component IEA UniProt GO_REF:0000104 NCBI chr14:108,853,038...108,886,587
Ensembl chr14:108,853,022...108,886,558
JBrowse link
G MNAT1 MNAT1 component of CDK activating kinase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:189,690,343...189,908,144
Ensembl chr 1:189,690,354...189,910,589
JBrowse link
G MSH2 mutS homolog 2 ISO (PMID:8942985)
(MGI:MGI:2667543|PMID:12687013)
BHF-UCL
MGI
PMID:8942985, PMID:12687013 MGI:MGI:2667543 NCBI chr 3:93,082,958...93,163,556
Ensembl chr 3:93,081,219...93,163,628
JBrowse link
G MSH3 mutS homolog 3 ISO (PMID:8942985) BHF-UCL PMID:8942985 NCBI chr 2:89,255,647...89,456,102
Ensembl chr 2:89,250,189...89,453,936
JBrowse link
G MSH6 mutS homolog 6 ISO (PMID:8942985) BHF-UCL PMID:8942985 NCBI chr 3:92,792,590...92,814,154
Ensembl chr 3:92,785,664...92,814,128
JBrowse link
G MUS81 MUS81 structure-specific endonuclease subunit IEA Ensembl GO_REF:0000107 NCBI chr 2:6,462,825...6,470,780
Ensembl chr 2:6,463,413...6,469,112
JBrowse link
G MUTYH mutY DNA glycosylase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:166,002,853...166,012,191 JBrowse link
G NABP1 nucleic acid binding protein 1 ISO (PMID:19683501) UniProtKB PMID:19683501 NCBI chr15:96,313,884...96,322,108
Ensembl chr15:96,313,903...96,335,191
JBrowse link
G NABP2 nucleic acid binding protein 2 ISO (MGI:MGI:5629774|PMID:25589350)
(PMID:18449195), (PMID:19683501)
BHF-UCL
UniProtKB
PMID:18449195, PMID:19683501, PMID:25589350 MGI:MGI:5629774 NCBI chr 5:21,624,654...21,631,716
Ensembl chr 5:21,624,762...21,631,707
JBrowse link
G NEIL1 nei like DNA glycosylase 1 ISO (MGI:MGI:2389521|PMID:12200441) MGI PMID:12200441 MGI:MGI:2389521 NCBI chr 7:58,261,761...58,269,001
Ensembl chr 7:58,261,761...58,283,092
JBrowse link
G NOP53 NOP53 ribosome biogenesis factor IEA Ensembl GO_REF:0000107 NCBI chr 6:53,443,453...53,451,707
Ensembl chr 6:53,443,480...53,452,019
JBrowse link
G NPM1 nucleophosmin 1 ISO (PMID:19188445) UniProtKB PMID:19188445 NCBI chr16:52,767,263...52,781,862
Ensembl chr16:52,765,296...52,781,740
JBrowse link
G NSMCE1 NSE1 homolog, SMC5-SMC6 complex component IEA InterPro GO_REF:0000002 NCBI chr 3:19,609,796...19,649,869
Ensembl chr 3:19,608,744...19,653,281
JBrowse link
G NSMCE3 NSE3 homolog, SMC5-SMC6 complex component ISO (PMID:27427983) UniProtKB PMID:27427983 NCBI chr 1:144,469,617...144,474,026 JBrowse link
G NSMCE4A NSE4 homolog A, SMC5-SMC6 complex component IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:131,592,624...131,609,221
Ensembl chr14:131,594,130...131,609,204
JBrowse link
G NUDT1 nudix hydrolase 1 IEA InterPro GO_REF:0000002 NCBI chr 3:1,567,417...1,575,801
Ensembl chr 3:1,567,114...1,576,235
JBrowse link
G OGG1 8-oxoguanine DNA glycosylase ISO (MGI:MGI:3715683|PMID:17213818), (MGI:MGI:3759387|PMID:12447686)
(MGI:MGI:2150199|PMID:11532868), (MGI:MGI:3715683|PMID:17213818), (MGI:MGI:3759387|PMID:12447686)
(MGI:MGI:2668786|PMID:12874039)
MGI PMID:11532868, PMID:12447686, PMID:12874039, PMID:17213818 MGI:MGI:2150199, MGI:MGI:2668786, MGI:MGI:3715683, MGI:MGI:3759387 NCBI chr13:66,038,669...66,045,478 JBrowse link
G PARK7 Parkinsonism associated deglycase IEA Ensembl GO_REF:0000107 NCBI chr 6:68,629,327...68,645,147
Ensembl chr 6:68,629,214...68,645,520
JBrowse link
G PARP2 poly(ADP-ribose) polymerase 2 IEA UniProt GO_REF:0000043 NCBI chr 7:78,535,072...78,551,393
Ensembl chr 7:78,535,073...78,551,393
JBrowse link
G PDS5A PDS5 cohesin associated factor A IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:30,988,366...31,134,331
Ensembl chr 8:30,988,368...31,134,320
JBrowse link
G PDS5B PDS5 cohesin associated factor B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:9,014,694...9,223,035
Ensembl chr11:9,014,377...9,223,035
JBrowse link
G PIF1 PIF1 5'-to-3' DNA helicase IEA UniProt GO_REF:0000104 NCBI chr 1:107,218,580...107,227,171
Ensembl chr 1:107,218,657...107,227,171
JBrowse link
G PMS2 PMS1 homolog 2, mismatch repair system component ISO (MGI:MGI:3513725|PMID:15480418) MGI PMID:15480418 MGI:MGI:3513725 NCBI chr 3:5,118,002...5,145,634
Ensembl chr 3:5,113,230...5,145,634
JBrowse link
G PNKP polynucleotide kinase 3'-phosphatase IEA
IBA
(PMID:21873635) InterPro
GO_Central
Ensembl
PMID:21873635 GO_REF:0000002, GO_REF:0000107 NCBI chr 6:54,870,359...54,880,814
Ensembl chr 6:54,870,361...54,880,807
JBrowse link
G POLA1 DNA polymerase alpha 1, catalytic subunit NOT ISO (PMID:11470886)
(PMID:3335506)
UniProtKB PMID:3335506, PMID:11470886 NCBI chr  X:20,756,674...21,064,265
Ensembl chr  X:20,756,201...21,102,061
JBrowse link
G POLD2 DNA polymerase delta 2, accessory subunit IEA UniProt GO_REF:0000043 NCBI chr18:51,038,272...51,046,782
Ensembl chr18:51,038,358...51,046,780
JBrowse link
G POLE DNA polymerase epsilon, catalytic subunit IEA InterPro GO_REF:0000002 NCBI chr14:22,798,146...22,852,818
Ensembl chr14:22,798,192...22,853,547
JBrowse link
G POLG2 DNA polymerase gamma 2, accessory subunit IEA InterPro GO_REF:0000002 NCBI chr12:14,582,075...14,601,576
Ensembl chr12:14,582,544...14,601,576
JBrowse link
G POLH DNA polymerase eta IEA InterPro GO_REF:0000002 NCBI chr 7:38,569,211...38,601,794
Ensembl chr 7:38,567,775...38,601,790
JBrowse link
G POLI DNA polymerase iota IEA InterPro GO_REF:0000002 NCBI chr 1:103,793,779...103,820,365
Ensembl chr 1:103,794,071...103,824,646
JBrowse link
G POLK DNA polymerase kappa IEA InterPro
UniProt
GO_REF:0000002, GO_REF:0000043 NCBI chr 2:84,555,648...84,619,490
Ensembl chr 2:84,538,050...84,656,234
JBrowse link
G POLL DNA polymerase lambda IEA UniProt GO_REF:0000043 NCBI chr14:112,608,558...112,617,348
Ensembl chr14:112,606,193...112,617,319
JBrowse link
G POLM DNA polymerase mu IEA InterPro GO_REF:0000002 NCBI chr18:51,077,845...51,091,354 JBrowse link
G POLQ DNA polymerase theta ISO (MGI:MGI:2654407|PMID:12663541), (MGI:MGI:3511081|PMID:15542845)
(MGI:MGI:3511081|PMID:15542845)
MGI PMID:12663541, PMID:15542845 MGI:MGI:2654407, MGI:MGI:3511081 NCBI chr13:138,962,634...139,108,499
Ensembl chr13:138,978,463...139,108,502
JBrowse link
G PRPF19 pre-mRNA processing factor 19 IEA UniProt GO_REF:0000043 NCBI chr 2:10,851,779...10,860,315
Ensembl chr 2:10,851,579...10,860,838
JBrowse link
G PSME4 proteasome activator subunit 4 IEA Ensembl
UniProt
GO_REF:0000043, GO_REF:0000107 NCBI chr 3:87,231,510...87,337,709
Ensembl chr 3:87,231,534...87,337,703
JBrowse link
G PTTG1 PTTG1 regulator of sister chromatid separation, securin IEA UniProt GO_REF:0000043 NCBI chr16:63,104,698...63,112,382 JBrowse link
G PWWP3A PWWP domain containing 3A, DNA repair factor IEA InterPro GO_REF:0000002 NCBI chr 2:77,089,915...77,111,236
Ensembl chr 2:77,089,915...77,111,206
JBrowse link
G RAD1 RAD1 checkpoint DNA exonuclease IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:20,491,851...20,512,198
Ensembl chr16:20,466,889...20,512,135
JBrowse link
G RAD17 RAD17 checkpoint clamp loader component IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr16:47,499,669...47,529,703
Ensembl chr16:47,499,669...47,529,702
JBrowse link
G RAD50 RAD50 double strand break repair protein IEA InterPro
UniProt
GO_REF:0000002, GO_REF:0000043 NCBI chr 2:134,844,460...134,939,188 JBrowse link
G RAD51 RAD51 recombinase IEA InterPro GO_REF:0000002 NCBI chr 1:130,592,414...130,640,326
Ensembl chr 1:130,586,647...130,640,136
JBrowse link
G RAD51AP1 RAD51 associated protein 1 IEA InterPro GO_REF:0000002 NCBI chr 5:65,872,277...65,897,210
Ensembl chr 5:65,872,281...65,897,215
JBrowse link
G RAD51C RAD51 paralog C IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr12:34,975,949...35,018,112
Ensembl chr12:34,975,957...35,019,018
JBrowse link
G RAD51D RAD51 paralog D IEA InterPro GO_REF:0000002 NCBI chr12:40,054,175...40,072,831 JBrowse link
G RAD9A RAD9 checkpoint clamp component A IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:5,123,142...5,129,740
Ensembl chr 2:5,123,124...5,129,906
JBrowse link
G RAD9B RAD9 checkpoint clamp component B IEA UniProt GO_REF:0000104 NCBI chr14:31,869,570...31,903,485
Ensembl chr14:31,871,719...31,903,417
JBrowse link
G RBM17 RNA binding motif protein 17 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:64,886,433...64,909,006
Ensembl chr10:64,885,866...64,908,964
JBrowse link
G RECQL RecQ like helicase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:51,953,460...51,995,619
Ensembl chr 5:51,953,184...52,003,742
JBrowse link
G RECQL5 RecQ like helicase 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:5,732,336...5,770,136
Ensembl chr12:5,732,348...5,770,136
JBrowse link
G REV3L REV3 like, DNA directed polymerase zeta catalytic subunit ISO (MGI:MGI:2176643|PMID:11884603) MGI PMID:11884603 MGI:MGI:2176643 NCBI chr 1:77,196,592...77,400,551
Ensembl chr 1:77,197,409...77,400,137
JBrowse link
G RFC1 replication factor C subunit 1 IEA InterPro GO_REF:0000002 NCBI chr 8:30,552,369...30,635,932
Ensembl chr 8:30,552,375...30,635,880
JBrowse link
G RFC2 replication factor C subunit 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:11,373,489...11,392,690
Ensembl chr 3:11,373,489...11,392,695
JBrowse link
G RFC3 replication factor C subunit 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:10,145,927...10,524,472
Ensembl chr11:10,145,974...10,527,268
JBrowse link
G RFC4 replication factor C subunit 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:124,589,292...124,604,421
Ensembl chr13:124,589,295...124,604,426
JBrowse link
G RFC5 replication factor C subunit 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:34,630,374...34,642,598
Ensembl chr14:34,613,943...34,642,588
JBrowse link
G RFFL ring finger and FYVE like domain containing E3 ubiquitin protein ligase IEA InterPro GO_REF:0000002 NCBI chr12:40,075,259...40,151,034 JBrowse link
G RMI2 RecQ mediated genome instability 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:31,807,717...31,814,869
Ensembl chr 3:31,808,015...31,814,843
JBrowse link
G RPA1 replication protein A1 IEA InterPro GO_REF:0000002 NCBI chr12:48,009,652...48,048,744
Ensembl chr12:48,009,724...48,048,734
JBrowse link
G RPA2 replication protein A2 IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 6:85,032,604...85,045,899
Ensembl chr 6:85,031,578...85,045,916
JBrowse link
G RPAIN RPA interacting protein IEA Ensembl GO_REF:0000107 NCBI chr12:51,553,130...51,562,419
Ensembl chr12:51,553,130...51,562,743
JBrowse link
G RPS3 ribosomal protein S3 IEA UniProt GO_REF:0000043 NCBI chr 9:9,612,939...9,630,404
Ensembl chr 9:9,616,456...9,630,413
JBrowse link
G RRM2B ribonucleotide reductase regulatory TP53 inducible subunit M2B IEA Ensembl GO_REF:0000107 NCBI chr 4:34,823,869...34,859,777
Ensembl chr 4:34,823,757...34,859,780
JBrowse link
G RTEL1 regulator of telomere elongation helicase 1 IEA UniProt GO_REF:0000104 NCBI chr17:62,611,844...62,636,628 JBrowse link
G RUVBL1 RuvB like AAA ATPase 1 IEA UniProt GO_REF:0000043 NCBI chr13:72,196,219...72,246,514
Ensembl chr13:72,200,511...72,248,582
JBrowse link
G RUVBL2 RuvB like AAA ATPase 2 IEA UniProt GO_REF:0000043 NCBI chr 6:54,250,494...54,263,492
Ensembl chr 6:54,250,515...54,266,893
JBrowse link
G SAMHD1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 IEA UniProt GO_REF:0000043 NCBI chr17:40,117,348...40,171,935
Ensembl chr17:40,112,978...40,171,895
JBrowse link
G SLX1A SLX1 homolog A, structure-specific endonuclease subunit ISO (PMID:19595721), (PMID:19595722), (PMID:19596235), (PMID:19596236) UniProtKB PMID:19595721, PMID:19595722, PMID:19596235, PMID:19596236 NCBI chr 3:18,346,501...18,349,509 JBrowse link
G SLX4 SLX4 structure-specific endonuclease subunit IEA UniProt GO_REF:0000043 NCBI chr 3:38,646,904...38,670,173
Ensembl chr 3:38,646,938...38,670,166
JBrowse link
G SMARCAL1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:118,627,734...118,688,005
Ensembl chr15:118,629,238...118,687,940
JBrowse link
G SMC1A structural maintenance of chromosomes 1A IEA InterPro GO_REF:0000002 NCBI chr  X:46,143,738...46,202,187
Ensembl chr  X:46,144,920...46,220,378
JBrowse link
G SMUG1 single-strand-selective monofunctional uracil-DNA glycosylase 1 ISO RGD PMID:12718542 RGD:2317001 NCBI chr 5:19,375,244...19,412,656
Ensembl chr 5:19,398,248...19,412,606
JBrowse link
G SSRP1 structure specific recognition protein 1 IEA UniProt GO_REF:0000043 NCBI chr 2:13,619,666...13,629,233
Ensembl chr 2:13,619,716...13,629,233
JBrowse link
G SUPT16H SPT16 homolog, facilitates chromatin remodeling subunit IEA UniProt GO_REF:0000104 NCBI chr 7:77,780,968...77,814,519
Ensembl chr 7:77,781,316...77,814,505
JBrowse link
G TDG thymine DNA glycosylase IEA InterPro GO_REF:0000002 NCBI chr 5:80,473,233...80,492,295
Ensembl chr 5:80,473,233...80,492,287
JBrowse link
G TDP1 tyrosyl-DNA phosphodiesterase 1 IEA UniProt GO_REF:0000043 NCBI chr 7:111,767,094...111,853,262
Ensembl chr 7:111,767,089...111,853,257
JBrowse link
G TIMELESS timeless circadian regulator IBA (PMID:21873635) GO_Central PMID:21873635 Ensembl chr 5:21,759,474...21,787,521 JBrowse link
G TP53BP1 tumor protein p53 binding protein 1 ISO (MGI:MGI:3053255|PMID:15364958) MGI PMID:15364958 MGI:MGI:3053255 NCBI chr 1:127,958,500...128,032,370
Ensembl chr 1:127,958,518...128,028,718
JBrowse link
G TREX2 three prime repair exonuclease 2 IEA InterPro GO_REF:0000002 NCBI chr  X:124,234,736...124,244,193
Ensembl chr  X:124,234,738...124,238,598
JBrowse link
G TRIM28 tripartite motif containing 28 IEA Ensembl GO_REF:0000107 NCBI chr 6:63,094,382...63,101,532
Ensembl chr 6:63,094,648...63,101,532
JBrowse link
G TRIP12 thyroid hormone receptor interactor 12 IEA UniProt GO_REF:0000043 NCBI chr15:130,784,567...130,940,497
Ensembl chr15:130,787,581...130,939,575
JBrowse link
G TRRAP transformation/transcription domain associated protein IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:5,903,205...6,029,343
Ensembl chr 3:5,909,237...6,029,340
JBrowse link
G UBE2A ubiquitin conjugating enzyme E2 A IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr  X:97,925,136...98,007,551
Ensembl chr  X:97,925,131...98,013,194
JBrowse link
G UBE2B ubiquitin conjugating enzyme E2 B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:136,652,764...136,667,213
Ensembl chr 2:136,652,784...136,667,949
JBrowse link
G UBE2T ubiquitin conjugating enzyme E2 T IEA Ensembl GO_REF:0000107 NCBI chr10:24,454,492...24,459,085
Ensembl chr10:24,454,495...24,459,057
JBrowse link
G UBE2U ubiquitin conjugating enzyme E2 U IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:148,233,498...148,314,193
Ensembl chr 6:148,233,412...148,305,330
JBrowse link
G UPF1 UPF1 RNA helicase and ATPase IEA Ensembl GO_REF:0000107 NCBI chr 2:58,975,013...59,013,546
Ensembl chr 2:58,975,015...59,013,495
JBrowse link
G USP10 ubiquitin specific peptidase 10 IEA UniProt GO_REF:0000043 NCBI chr 6:3,977,235...4,043,539
Ensembl chr 6:3,977,229...4,043,534
JBrowse link
G USP3 ubiquitin specific peptidase 3 IEA Ensembl GO_REF:0000107 NCBI chr 1:108,414,358...108,515,611
Ensembl chr 1:108,414,360...108,515,451
JBrowse link
G USP45 ubiquitin specific peptidase 45 IEA Ensembl GO_REF:0000107 NCBI chr 1:66,387,616...66,454,806
Ensembl chr 1:66,387,603...66,454,741
JBrowse link
G UVRAG UV radiation resistance associated ISO (MGI:MGI:5644018|PMID:22542840)
(PMID:22542840)
UniProtKB PMID:22542840 MGI:MGI:5644018 NCBI chr 9:10,088,779...10,370,857
Ensembl chr 9:10,088,798...10,369,037
JBrowse link
G VCP valosin containing protein ISS UniProt GO_REF:0000024 NCBI chr 1:235,854,532...235,869,712
Ensembl chr 1:235,796,446...235,876,321
JBrowse link
G WDHD1 WD repeat and HMG-box DNA binding protein 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:184,300,291...184,378,974
Ensembl chr 1:184,300,291...184,378,959
JBrowse link
G WRN WRN RecQ like helicase IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr15:53,966,968...54,094,855
Ensembl chr15:53,966,972...54,094,587
JBrowse link
G XPA XPA, DNA damage recognition and repair factor ISO (PMID:1601884)
(MGI:MGI:1270007|PMID:9661901), (MGI:MGI:2179786|PMID:11950998)
CAFA
MGI
PMID:1601884, PMID:9661901, PMID:11950998 MGI:MGI:1270007, MGI:MGI:2179786 NCBI chr 1:239,532,331...239,568,589
Ensembl chr 1:239,532,246...239,568,649
JBrowse link
G XPC XPC complex subunit, DNA damage recognition and repair factor ISO (MGI:MGI:2445277|PMID:12555660) MGI PMID:12555660 MGI:MGI:2445277 NCBI chr13:70,348,841...70,397,194
Ensembl chr13:70,348,864...70,397,782
JBrowse link
G XRCC1 X-ray repair cross complementing 1 ISO (MGI:MGI:4359093|PMID:19633665) MGI PMID:19633665 MGI:MGI:4359093 NCBI chr 6:50,403,691...50,425,730
Ensembl chr 6:50,403,686...50,425,710
JBrowse link
G XRCC2 X-ray repair cross complementing 2 ISO (PMID:10422536) BHF-UCL PMID:10422536 NCBI chr18:4,808,428...4,834,281
Ensembl chr18:4,808,469...4,835,804
JBrowse link
G XRCC3 X-ray repair cross complementing 3 IEA InterPro GO_REF:0000002
G ZBTB1 zinc finger and BTB domain containing 1 ISO (PMID:24657165) UniProtKB PMID:24657165 NCBI chr 7:88,575,563...88,602,726
Ensembl chr 7:88,576,008...88,610,480
JBrowse link
G ZMPSTE24 zinc metallopeptidase STE24 IEA Ensembl GO_REF:0000107 NCBI chr 6:96,008,307...96,057,131
Ensembl chr 6:96,008,455...96,062,951
JBrowse link
G ZRANB3 zinc finger RANBP2-type containing 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:16,414,291...16,727,659
Ensembl chr15:16,414,757...16,727,842
JBrowse link
base-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G APEX1 apurinic/apyrimidinic endodeoxyribonuclease 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:78,451,845...78,454,938
Ensembl chr 7:78,451,851...78,454,938
JBrowse link
G APEX2 apurinic/apyrimidinic endodeoxyribonuclease 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:47,862,682...47,870,579
Ensembl chr  X:47,862,667...47,885,840
JBrowse link
G DNA2 DNA replication helicase/nuclease 2 IEA Ensembl GO_REF:0000107 NCBI chr14:71,550,405...71,607,067
Ensembl chr14:71,549,815...71,651,089
JBrowse link
G ERCC6 ERCC excision repair 6, chromatin remodeling factor IEA Ensembl GO_REF:0000107 NCBI chr14:89,998,125...90,075,911
Ensembl chr14:90,002,024...90,075,898
JBrowse link
G FEN1 flap structure-specific endonuclease 1 IEA UniProt GO_REF:0000104 NCBI chr 2:9,752,004...9,756,863
Ensembl chr 2:9,752,751...9,753,893
JBrowse link
G HMGA1 high mobility group AT-hook 1 ISO (PMID:19465398) UniProtKB PMID:19465398 NCBI chr 7:30,320,090...30,329,413 JBrowse link
G HMGA2 high mobility group AT-hook 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:30,188,521...30,329,635 JBrowse link
G HMGB1 high mobility group box 1 ISO (MGI:MGI:3722031|PMID:17803946) UniProt PMID:17803946 MGI:MGI:3722031 NCBI chr11:7,195,556...7,321,071 JBrowse link
G HUWE1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:46,281,958...46,444,315
Ensembl chr  X:46,282,415...46,441,623
JBrowse link
G LIG1 DNA ligase 1 IEA Ensembl GO_REF:0000107 NCBI chr 6:53,620,483...53,660,020
Ensembl chr 6:53,620,483...53,686,562
JBrowse link
G LOC100359361 high mobility group AT-hook 2-like IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:191,094,785...191,105,394 JBrowse link
G MPG N-methylpurine DNA glycosylase IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 3:41,540,650...41,548,339 JBrowse link
G MUTYH mutY DNA glycosylase IEA
IBA
(PMID:21873635) UniProt
GO_Central
PMID:21873635 GO_REF:0000104 NCBI chr 6:166,002,853...166,012,191 JBrowse link
G NEIL1 nei like DNA glycosylase 1 IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 7:58,261,761...58,269,001
Ensembl chr 7:58,261,761...58,283,092
JBrowse link
G NEIL2 nei like DNA glycosylase 2 IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr14:14,945,129...14,966,305
Ensembl chr14:14,945,168...15,002,368
JBrowse link
G NEIL3 nei like DNA glycosylase 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:39,416,073...39,632,313
Ensembl chr15:39,581,856...39,632,310
JBrowse link
G NTHL1 nth like DNA glycosylase 1 IEA InterPro GO_REF:0000002 NCBI chr 3:39,935,619...39,941,718
Ensembl chr 3:39,934,912...39,941,712
JBrowse link
G OGG1 8-oxoguanine DNA glycosylase ISO (MGI:MGI:1349233|PMID:10570187)
(MGI:MGI:894433|PMID:9207108)
RGD
MGI
PMID:9207108, PMID:9801319, PMID:10570187 MGI:MGI:1349233, MGI:MGI:894433, RGD:729091 NCBI chr13:66,038,669...66,045,478 JBrowse link
G PARP1 poly(ADP-ribose) polymerase 1 ISO (MGI:MGI:2181257|PMID:11948190) MGI PMID:11948190 MGI:MGI:2181257 NCBI chr10:14,203,157...14,241,164
Ensembl chr10:14,203,159...14,241,197
JBrowse link
G PARP2 poly(ADP-ribose) polymerase 2 IEA Ensembl GO_REF:0000107 NCBI chr 7:78,535,072...78,551,393
Ensembl chr 7:78,535,073...78,551,393
JBrowse link
G POLB DNA polymerase beta IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:11,356,130...11,388,122
Ensembl chr17:11,356,129...11,388,821
JBrowse link
G POLQ DNA polymerase theta IEA Ensembl GO_REF:0000107 NCBI chr13:138,962,634...139,108,499
Ensembl chr13:138,978,463...139,108,502
JBrowse link
G RPA1 replication protein A1 IEA Ensembl GO_REF:0000107 NCBI chr12:48,009,652...48,048,744
Ensembl chr12:48,009,724...48,048,734
JBrowse link
G RPA2 replication protein A2 IEA Ensembl GO_REF:0000107 NCBI chr 6:85,032,604...85,045,899
Ensembl chr 6:85,031,578...85,045,916
JBrowse link
G RPA3 replication protein A3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:77,910,876...77,914,872
Ensembl chr 9:77,910,881...77,937,060
JBrowse link
G SIRT6 sirtuin 6 IEA Ensembl GO_REF:0000107 NCBI chr 2:74,568,539...74,577,774
Ensembl chr 2:74,568,436...74,577,772
JBrowse link
G SMUG1 single-strand-selective monofunctional uracil-DNA glycosylase 1 IEA Ensembl
InterPro
GO_REF:0000002, GO_REF:0000107 NCBI chr 5:19,375,244...19,412,656
Ensembl chr 5:19,398,248...19,412,606
JBrowse link
G TDG thymine DNA glycosylase ISO (MGI:MGI:5287540|PMID:21817016)
(PMID:21862836), (PMID:22327402)
UniProtKB PMID:21817016, PMID:21862836, PMID:22327402 MGI:MGI:5287540 NCBI chr 5:80,473,233...80,492,295
Ensembl chr 5:80,473,233...80,492,287
JBrowse link
G UNG uracil DNA glycosylase IEA UniProt GO_REF:0000104 NCBI chr14:41,746,498...41,757,841
Ensembl chr14:41,746,501...41,757,862
JBrowse link
G USP47 ubiquitin specific peptidase 47 IEA Ensembl GO_REF:0000107 NCBI chr 2:47,449,162...47,583,893
Ensembl chr 2:47,448,122...47,582,814
JBrowse link
G WRN WRN RecQ like helicase IEA Ensembl GO_REF:0000107 NCBI chr15:53,966,968...54,094,855
Ensembl chr15:53,966,972...54,094,587
JBrowse link
G XPA XPA, DNA damage recognition and repair factor IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:239,532,331...239,568,589
Ensembl chr 1:239,532,246...239,568,649
JBrowse link
G XRCC1 X-ray repair cross complementing 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:50,403,691...50,425,730
Ensembl chr 6:50,403,686...50,425,710
JBrowse link
base-excision repair, AP site formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NTHL1 nth like DNA glycosylase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:39,935,619...39,941,718
Ensembl chr 3:39,934,912...39,941,712
JBrowse link
G OGG1 8-oxoguanine DNA glycosylase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:66,038,669...66,045,478 JBrowse link
G TDG thymine DNA glycosylase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:80,473,233...80,492,295
Ensembl chr 5:80,473,233...80,492,287
JBrowse link
base-excision repair, AP site formation via deaminated base removal term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G UNG uracil DNA glycosylase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:41,746,498...41,757,841
Ensembl chr14:41,746,501...41,757,862
JBrowse link
base-excision repair, DNA ligation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LIG3 DNA ligase 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:40,153,105...40,205,077
Ensembl chr12:40,147,681...40,183,622
JBrowse link
base-excision repair, gap-filling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PCNA proliferating cell nuclear antigen IEA Ensembl GO_REF:0000107 NCBI chr17:14,137,746...14,142,584
Ensembl chr17:14,125,814...14,185,276
JBrowse link
G POLB DNA polymerase beta IEA Ensembl GO_REF:0000107 NCBI chr17:11,356,130...11,388,122
Ensembl chr17:11,356,129...11,388,821
JBrowse link
G POLD1 DNA polymerase delta 1, catalytic subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:55,247,799...55,272,087
Ensembl chr 6:55,247,861...55,272,166
JBrowse link
G POLE DNA polymerase epsilon, catalytic subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:22,798,146...22,852,818
Ensembl chr14:22,798,192...22,853,547
JBrowse link
G POLG DNA polymerase gamma, catalytic subunit IEA Ensembl GO_REF:0000107 NCBI chr 7:54,889,150...54,907,167
Ensembl chr 7:54,889,153...54,906,856
JBrowse link
G POLL DNA polymerase lambda IEA Ensembl GO_REF:0000107 NCBI chr14:112,608,558...112,617,348
Ensembl chr14:112,606,193...112,617,319
JBrowse link
DNA dealkylation involved in DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALKBH1 alkB homolog 1, histone H2A dioxygenase IEA Ensembl GO_REF:0000107 NCBI chr 7:100,676,778...100,710,414
Ensembl chr 7:100,676,629...100,710,788
JBrowse link
G ALKBH2 alkB homolog 2, alpha-ketoglutarate dependent dioxygenase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:41,760,427...41,766,990
Ensembl chr14:41,760,505...41,766,090
JBrowse link
G ALKBH3 alkB homolog 3, alpha-ketoglutarate dependent dioxygenase IEA InterPro GO_REF:0000002 NCBI chr 2:18,408,987...18,448,285
Ensembl chr 2:18,271,070...18,448,292
JBrowse link
G ASCC3 activating signal cointegrator 1 complex subunit 3 IEA Ensembl GO_REF:0000107 NCBI chr 1:67,331,939...67,657,080
Ensembl chr 1:67,331,941...67,657,085
JBrowse link
G FTO FTO alpha-ketoglutarate dependent dioxygenase IEA Ensembl
InterPro
GO_REF:0000002, GO_REF:0000107 NCBI chr 6:31,177,112...31,564,674
Ensembl chr 6:31,174,569...31,564,707
JBrowse link
G MGMT O-6-methylguanine-DNA methyltransferase IEA Ensembl GO_REF:0000107 NCBI chr14:138,502,005...138,771,543
Ensembl chr14:138,499,161...138,779,938
JBrowse link
DNA double-strand break processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BLM BLM RecQ like helicase IEA Ensembl GO_REF:0000107 NCBI chr 7:53,317,515...53,412,649
Ensembl chr 7:53,317,540...53,412,647
JBrowse link
G DNA2 DNA replication helicase/nuclease 2 IEA Ensembl GO_REF:0000107 NCBI chr14:71,550,405...71,607,067
Ensembl chr14:71,549,815...71,651,089
JBrowse link
G EXD2 exonuclease 3'-5' domain containing 2 IEA Ensembl GO_REF:0000107 NCBI chr 7:92,847,958...92,909,044
Ensembl chr 7:92,848,116...92,913,771
JBrowse link
G LOC100514009 histone-lysine N-methyltransferase SETMAR ISO (PMID:21491884) UniProtKB PMID:21491884 NCBI chr13:60,914,412...60,933,064 JBrowse link
G SMARCAD1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 IEA Ensembl GO_REF:0000107 NCBI chr 8:125,410,221...125,488,471
Ensembl chr 8:125,409,507...125,488,436
JBrowse link
G UBE2N ubiquitin conjugating enzyme E2 N ISO (PMID:17349954) HGNC PMID:17349954 NCBI chr 5:89,673,306...89,716,345 JBrowse link
G UBE2V2 ubiquitin conjugating enzyme E2 V2 IEA Ensembl GO_REF:0000107 NCBI chr 4:79,621,343...79,652,502
Ensembl chr 4:79,419,358...79,652,471
JBrowse link
DNA double-strand break processing involved in repair via single-strand annealing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RAD52 RAD52 homolog, DNA repair protein IEA Ensembl GO_REF:0000107 NCBI chr 5:68,140,846...68,223,587
Ensembl chr 5:68,133,699...68,223,662
JBrowse link
G RBBP8 RB binding protein 8, endonuclease IEA InterPro
Ensembl
GO_REF:0000002, GO_REF:0000107 NCBI chr 6:107,923,921...108,020,067
Ensembl chr 6:107,924,002...108,022,669
JBrowse link
G RNF138 ring finger protein 138 IEA Ensembl GO_REF:0000107 NCBI chr 6:115,927,021...115,975,754
Ensembl chr 6:115,926,774...115,978,724
JBrowse link
G SLX1A SLX1 homolog A, structure-specific endonuclease subunit ISO (PMID:19595721) UniProtKB PMID:19595721 NCBI chr 3:18,346,501...18,349,509 JBrowse link
G SLX4 SLX4 structure-specific endonuclease subunit IEA Ensembl GO_REF:0000107 NCBI chr 3:38,646,904...38,670,173
Ensembl chr 3:38,646,938...38,670,166
JBrowse link
DNA ligation involved in DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HMGB1 high mobility group box 1 IDA (PMID:9600082) UniProt PMID:9600082 NCBI chr11:7,195,556...7,321,071 JBrowse link
G HMGB2 high mobility group box 2 IDA (PMID:9600082) AgBase PMID:9600082 NCBI chr14:16,709,966...16,712,288
Ensembl chr14:16,710,047...16,717,126
JBrowse link
G LIG1 DNA ligase 1 NOT IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 6:53,620,483...53,660,020
Ensembl chr 6:53,620,483...53,686,562
JBrowse link
G LIG3 DNA ligase 3 IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr12:40,153,105...40,205,077
Ensembl chr12:40,147,681...40,183,622
JBrowse link
G LIG4 DNA ligase 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:75,537,027...75,547,711
Ensembl chr11:75,537,032...75,547,691
JBrowse link
G PAXX PAXX non-homologous end joining factor IEA Ensembl GO_REF:0000107
G XRCC4 X-ray repair cross complementing 4 ISO (PMID:12517771) UniProtKB PMID:12517771 NCBI chr 2:91,358,348...91,643,697
Ensembl chr 2:91,358,399...91,811,208
JBrowse link
DNA recombinase assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DMC1 DNA meiotic recombinase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:9,431,236...9,470,333
Ensembl chr 5:9,431,307...9,470,549
JBrowse link
G RAD51 RAD51 recombinase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:130,592,414...130,640,326
Ensembl chr 1:130,586,647...130,640,136
JBrowse link
G RAD52 RAD52 homolog, DNA repair protein IEA InterPro GO_REF:0000002 NCBI chr 5:68,140,846...68,223,587
Ensembl chr 5:68,133,699...68,223,662
JBrowse link
G SWI5 SWI5 homologous recombination repair protein IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:268,720,232...268,726,527
Ensembl chr 1:268,719,554...268,726,527
JBrowse link
DNA replication proofreading term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POLD1 DNA polymerase delta 1, catalytic subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:55,247,799...55,272,087
Ensembl chr 6:55,247,861...55,272,166
JBrowse link
G POLE DNA polymerase epsilon, catalytic subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:22,798,146...22,852,818
Ensembl chr14:22,798,192...22,853,547
JBrowse link
DNA synthesis involved in DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDKN2D cyclin dependent kinase inhibitor 2D IEA Ensembl GO_REF:0000107 NCBI chr 2:69,337,428...69,339,998
Ensembl chr 2:69,337,855...69,339,999
JBrowse link
G HROB homologous recombination factor with OB-fold IEA Ensembl GO_REF:0000107 NCBI chr12:19,044,569...19,077,877
Ensembl chr12:19,043,984...19,077,829
JBrowse link
G POLA1 DNA polymerase alpha 1, catalytic subunit ISO (PMID:11470886) UniProtKB PMID:11470886 NCBI chr  X:20,756,674...21,064,265
Ensembl chr  X:20,756,201...21,102,061
JBrowse link
G POLD1 DNA polymerase delta 1, catalytic subunit ISO (PMID:1730053)
(PMID:24191025), (PMID:3335506)
UniProtKB
UniProt
PMID:1730053, PMID:3335506, PMID:24191025 NCBI chr 6:55,247,799...55,272,087
Ensembl chr 6:55,247,861...55,272,166
JBrowse link
G POLD4 DNA polymerase delta 4, accessory subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:5,160,906...5,162,753 JBrowse link
G POLE DNA polymerase epsilon, catalytic subunit IEA Ensembl GO_REF:0000107 NCBI chr14:22,798,146...22,852,818
Ensembl chr14:22,798,192...22,853,547
JBrowse link
G POLH DNA polymerase eta ISO (PMID:17563354) UniProtKB PMID:17563354 NCBI chr 7:38,569,211...38,601,794
Ensembl chr 7:38,567,775...38,601,790
JBrowse link
G SIRT1 sirtuin 1 IEA Ensembl GO_REF:0000107 NCBI chr14:71,091,167...71,126,351
Ensembl chr14:71,091,157...71,123,299
JBrowse link
G WRN WRN RecQ like helicase IEA Ensembl GO_REF:0000107 NCBI chr15:53,966,968...54,094,855
Ensembl chr15:53,966,972...54,094,587
JBrowse link
G WRNIP1 WRN helicase interacting protein 1 IEA Ensembl GO_REF:0000107 NCBI chr 7:1,656,952...1,667,885
Ensembl chr 7:1,656,442...1,667,879
JBrowse link
DNA synthesis involved in UV-damage excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POLA1 DNA polymerase alpha 1, catalytic subunit NOT ISO (PMID:1730053) UniProtKB PMID:1730053 NCBI chr  X:20,756,674...21,064,265
Ensembl chr  X:20,756,201...21,102,061
JBrowse link
G POLD3 DNA polymerase delta 3, accessory subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:8,906,491...8,956,845
Ensembl chr 9:8,906,459...8,958,323
JBrowse link
G TREX1 three prime repair exonuclease 1 IEA Ensembl GO_REF:0000107 NCBI chr13:31,177,604...31,180,764
Ensembl chr13:31,178,601...31,180,592
JBrowse link
double-strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABRAXAS1 abraxas 1, BRCA1 A complex subunit IEA Ensembl GO_REF:0000107 NCBI chr 8:135,002,297...135,021,205
Ensembl chr 8:135,002,320...135,021,197
JBrowse link
G ACTR5 actin related protein 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:41,702,273...41,724,398
Ensembl chr17:41,702,273...41,724,394
JBrowse link
G APBB1 amyloid beta precursor protein binding family B member 1 ISO (MGI:MGI:3698695|PMID:17121854)
PMID:19282473
UniProtKB
UniProt
PMID:17121854, PMID:19282473 MGI:MGI:3698695, RGD:8553580 NCBI chr 9:3,303,032...3,323,828
Ensembl chr 9:3,303,019...3,323,828
JBrowse link
G APLF aprataxin and PNKP like factor IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 3:73,752,115...73,831,158
Ensembl chr 3:73,752,106...73,831,075
JBrowse link
G APTX aprataxin IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:33,470,089...33,495,584
Ensembl chr10:33,445,168...33,771,582
JBrowse link
G BABAM1 BRISC and BRCA1 A complex member 1 IEA Ensembl GO_REF:0000107 NCBI chr 2:60,398,170...60,407,742
Ensembl chr 2:60,398,191...60,407,557
JBrowse link
G BABAM2 BRISC and BRCA1 A complex member 2 IEA Ensembl GO_REF:0000107 NCBI chr 3:110,897,250...111,328,414
Ensembl chr 3:110,897,351...111,328,405
JBrowse link
G BRCA1 BRCA1 DNA repair associated ISO (PMID:22186889)
(PMID:17525340), (PMID:17643121), (PMID:19261748)
(MGI:MGI:5545964|PMID:22186889)
CACAO
UniProtKB
PMID:17525340, PMID:17643121, PMID:19261748, PMID:22186889 MGI:MGI:5545964 NCBI chr12:19,788,087...19,854,515
Ensembl chr12:19,786,020...19,855,570
JBrowse link
G BRCA2 BRCA2 DNA repair associated ISO (PMID:16845393)
(MGI:MGI:3714678|PMID:17476307)
(MGI:MGI:1100157|PMID:9398843)
UniProtKB
MGI
PMID:9398843, PMID:16845393, PMID:17476307 MGI:MGI:1100157, MGI:MGI:3714678 NCBI chr11:8,805,950...8,858,128 JBrowse link
G BRCC3 BRCA1/BRCA2-containing complex subunit 3 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr  X:125,383,392...125,439,082
Ensembl chr  X:125,383,414...125,439,082
JBrowse link
G CDCA5 cell division cycle associated 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:7,103,648...7,112,772
Ensembl chr 2:7,102,982...7,113,202
JBrowse link
G CHEK2 checkpoint kinase 2 IEA Ensembl GO_REF:0000107 NCBI chr14:45,699,833...45,967,350
Ensembl chr14:45,926,613...45,967,296
JBrowse link
G CMTR1 cap methyltransferase 1 IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000104 NCBI chr 7:33,000,499...33,063,739
Ensembl chr 7:32,931,786...33,063,739
JBrowse link
G DCLRE1C DNA cross-link repair 1C IEA Ensembl GO_REF:0000107 NCBI chr10:46,820,016...46,863,848
Ensembl chr10:46,820,051...46,868,030
JBrowse link
G DDX1 DEAD-box helicase 1 IEA Ensembl GO_REF:0000107 NCBI chr 3:121,818,400...121,856,667
Ensembl chr 3:121,818,406...121,853,958
JBrowse link
G DTX3L deltex E3 ubiquitin ligase 3L IEA Ensembl GO_REF:0000107 NCBI chr13:137,950,266...137,961,381
Ensembl chr13:137,950,272...137,961,343
JBrowse link
G EME1 essential meiotic structure-specific endonuclease 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:26,670,126...26,680,097
Ensembl chr12:26,670,176...26,680,601
JBrowse link
G EME2 essential meiotic structure-specific endonuclease subunit 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:40,190,545...40,193,994
Ensembl chr 3:40,186,846...40,193,957
JBrowse link
G ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit NOT ISO (MGI:MGI:3770581|PMID:17912366)
(MGI:MGI:3047512|PMID:15199134)
(MGI:MGI:2153690|PMID:11707424)
MGI PMID:11707424, PMID:15199134, PMID:17912366 MGI:MGI:2153690, MGI:MGI:3047512, MGI:MGI:3770581 NCBI chr 6:51,783,537...51,808,898 JBrowse link
G ESCO2 establishment of sister chromatid cohesion N-acetyltransferase 2 ISO (MGI:MGI:5493398|PMID:22614755) MGI PMID:22614755 MGI:MGI:5493398 NCBI chr14:11,495,297...11,532,898 JBrowse link
G EXD2 exonuclease 3'-5' domain containing 2 ISO (PMID:26807646) UniProtKB PMID:26807646 NCBI chr 7:92,847,958...92,909,044
Ensembl chr 7:92,848,116...92,913,771
JBrowse link
G EYA1 EYA transcriptional coactivator and phosphatase 1 IEA Ensembl GO_REF:0000107 NCBI chr 4:63,970,939...64,328,107
Ensembl chr 4:63,970,511...64,328,105
JBrowse link
G EYA3 EYA transcriptional coactivator and phosphatase 3 IEA Ensembl GO_REF:0000107 NCBI chr 6:85,095,409...85,185,856
Ensembl chr 6:85,095,409...85,185,799
JBrowse link
G GGN gametogenetin IEA InterPro GO_REF:0000002 NCBI chr 6:47,297,570...47,301,576
Ensembl chr 6:47,297,572...47,301,553
JBrowse link
G INO80 INO80 complex ATPase subunit ISO (PMID:20687897) UniProtKB PMID:20687897 NCBI chr 1:130,201,705...130,341,627
Ensembl chr 1:130,201,718...130,342,840
JBrowse link
G KAT5 lysine acetyltransferase 5 IEA Ensembl GO_REF:0000107 NCBI chr 2:6,560,544...6,572,461
Ensembl chr 2:6,560,513...6,572,466
JBrowse link
G LIG3 DNA ligase 3 ISO (PMID:19589734) BHF-UCL PMID:19589734 NCBI chr12:40,153,105...40,205,077
Ensembl chr12:40,147,681...40,183,622
JBrowse link
G LIG4 DNA ligase 4 ISO (PMID:19589734), (PMID:9242410)
(MGI:MGI:2445902|PMID:12531011)
(MGI:MGI:3715270|PMID:17554302)
(MGI:MGI:2445902|PMID:12531011), (MGI:MGI:3043875|PMID:15175260)
(MGI:MGI:3043875|PMID:15175260)
BHF-UCL
MGI
PMID:9242410, PMID:12531011, PMID:15175260, PMID:17554302, PMID:19589734 MGI:MGI:2445902, MGI:MGI:3043875, MGI:MGI:3715270 NCBI chr11:75,537,027...75,547,711
Ensembl chr11:75,537,032...75,547,691
JBrowse link
G LOC100625088 182 kDa tankyrase-1-binding protein ISO (PMID:25749521) BHF-UCL PMID:25749521
G MAD2L2 mitotic arrest deficient 2 like 2 IEA Ensembl GO_REF:0000107 NCBI chr 6:71,773,680...71,779,192
Ensembl chr 6:71,773,681...71,779,183
JBrowse link
G MARF1 meiosis regulator and mRNA stability factor 1 IEA Ensembl GO_REF:0000107 NCBI chr 3:7,180,762...7,228,229
Ensembl chr 3:7,180,749...7,228,413
JBrowse link
G MEIOC meiosis specific with coiled-coil domain IEA Ensembl GO_REF:0000107 NCBI chr12:18,652,582...18,663,227
Ensembl chr12:18,652,493...18,671,909
JBrowse link
G MRE11 MRE11 homolog, double strand break repair nuclease IEA UniProt GO_REF:0000104 NCBI chr 9:26,572,352...26,634,596
Ensembl chr 9:26,572,360...26,634,568
JBrowse link
G MSH2 mutS homolog 2 IEA Ensembl GO_REF:0000107 NCBI chr 3:93,082,958...93,163,556
Ensembl chr 3:93,081,219...93,163,628
JBrowse link
G MTA1 metastasis associated 1 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107
G NBN nibrin IEA InterPro GO_REF:0000002 NCBI chr 4:46,787,664...46,854,331
Ensembl chr 4:46,787,659...46,903,999
JBrowse link
G NIPBL NIPBL cohesin loading factor IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:22,152,455...22,364,373
Ensembl chr16:22,152,501...22,363,847
JBrowse link
G PARP1 poly(ADP-ribose) polymerase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:14,203,157...14,241,164
Ensembl chr10:14,203,159...14,241,197
JBrowse link
G PARP2 poly(ADP-ribose) polymerase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:78,535,072...78,551,393
Ensembl chr 7:78,535,073...78,551,393
JBrowse link
G PARP3 poly(ADP-ribose) polymerase family member 3 IEA
IBA
(PMID:21873635) Ensembl
InterPro
GO_Central
PMID:21873635 GO_REF:0000002, GO_REF:0000107 NCBI chr13:34,075,807...34,084,384
Ensembl chr13:34,075,801...34,085,210
JBrowse link
G PARP9 poly(ADP-ribose) polymerase family member 9 IEA Ensembl GO_REF:0000107 NCBI chr13:137,960,987...138,000,862
Ensembl chr13:137,961,357...138,002,024
JBrowse link
G POLQ DNA polymerase theta ISO (PMID:22135286) UniProtKB PMID:22135286 NCBI chr13:138,962,634...139,108,499
Ensembl chr13:138,978,463...139,108,502
JBrowse link
G PRKDC protein kinase, DNA-activated, catalytic subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:79,687,375...79,850,146
Ensembl chr 4:79,687,359...79,847,281
JBrowse link
G RAD21L1 RAD21 cohesin complex component like 1 ISO (MGI:MGI:5288570|PMID:21743440) MGI PMID:21743440 MGI:MGI:5288570 NCBI chr17:34,035,526...34,064,215 JBrowse link
G RAD50 RAD50 double strand break repair protein ISO (PMID:9590181) UniProtKB PMID:9590181 NCBI chr 2:134,844,460...134,939,188 JBrowse link
G RAD54L RAD54 like ISO (MGI:MGI:3043875|PMID:15175260) MGI PMID:15175260 MGI:MGI:3043875 NCBI chr 6:165,156,833...165,184,641
Ensembl chr 6:165,152,978...165,184,776
JBrowse link
G RNF168 ring finger protein 168 IEA UniProt GO_REF:0000104 NCBI chr13:133,625,534...133,659,253 JBrowse link
G RNF8 ring finger protein 8 IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000104 NCBI chr 7:32,931,786...32,969,536
Ensembl chr 7:32,931,786...33,063,739
JBrowse link
G SETX senataxin IEA Ensembl GO_REF:0000107 NCBI chr 1:272,093,449...272,170,857
Ensembl chr 1:272,095,358...272,170,750
JBrowse link
G SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 IEA InterPro GO_REF:0000002 NCBI chr 6:103,809,732...103,986,057
Ensembl chr 6:103,808,066...103,986,144
JBrowse link
G TDP1 tyrosyl-DNA phosphodiesterase 1 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 7:111,767,094...111,853,262
Ensembl chr 7:111,767,089...111,853,257
JBrowse link
G TDP2 tyrosyl-DNA phosphodiesterase 2 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 7:19,489,381...19,502,437
Ensembl chr 7:19,489,384...19,502,520
JBrowse link
G TP53 tumor protein p53 IEA Ensembl GO_REF:0000107 NCBI chr12:52,939,643...52,953,786
Ensembl chr12:52,939,643...52,953,819
JBrowse link
G TRIP13 thyroid hormone receptor interactor 13 ISS
IEA
UniProt
Ensembl
GO_REF:0000024, GO_REF:0000107 NCBI chr16:79,458,843...79,473,705
Ensembl chr16:79,458,847...79,473,712
JBrowse link
G UIMC1 ubiquitin interaction motif containing 1 ISS
IEA
IBA
(PMID:21873635) UniProt
Ensembl
InterPro
GO_Central
PMID:21873635 GO_REF:0000002, GO_REF:0000024, GO_REF:0000107 NCBI chr 2:80,895,631...81,040,712
Ensembl chr 2:80,919,244...81,035,711
JBrowse link
G VCAN versican IEA InterPro GO_REF:0000002 NCBI chr 2:91,682,177...91,811,674
Ensembl chr 2:91,358,399...91,811,208
JBrowse link
G VCP valosin containing protein ISS
IEA
UniProt
Ensembl
GO_REF:0000024, GO_REF:0000107 NCBI chr 1:235,854,532...235,869,712
Ensembl chr 1:235,796,446...235,876,321
JBrowse link
G WRN WRN RecQ like helicase ISO (PMID:21639834) UniProtKB PMID:21639834 NCBI chr15:53,966,968...54,094,855
Ensembl chr15:53,966,972...54,094,587
JBrowse link
G XRCC4 X-ray repair cross complementing 4 IEA InterPro GO_REF:0000002 NCBI chr 2:91,358,348...91,643,697
Ensembl chr 2:91,358,399...91,811,208
JBrowse link
G XRCC5 X-ray repair cross complementing 5 ISO (PMID:19581589)
(MGI:MGI:2445902|PMID:12531011)
BHF-UCL
MGI
PMID:12531011, PMID:19581589 MGI:MGI:2445902 NCBI chr15:118,354,943...118,451,974
Ensembl chr15:118,335,925...118,452,296
JBrowse link
G XRCC6 X-ray repair cross complementing 6 ISO (MGI:MGI:2155497|PMID:11751629) MGI PMID:11751629 MGI:MGI:2155497 NCBI chr 5:6,903,496...6,929,162
Ensembl chr 5:6,903,496...6,929,083
JBrowse link
G ZGRF1 zinc finger GRF-type containing 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:110,089,920...110,168,086
Ensembl chr 8:110,089,984...110,168,353
JBrowse link
double-strand break repair involved in meiotic recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRIP1 BRCA1 interacting protein C-terminal helicase 1 IEA Ensembl GO_REF:0000107 NCBI chr12:36,498,138...36,639,847
Ensembl chr12:36,443,697...36,634,088
JBrowse link
G FANCD2 FA complementation group D2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:66,241,951...66,308,601
Ensembl chr13:66,241,673...66,310,436
JBrowse link
G MCMDC2 minichromosome maintenance domain containing 2 IEA Ensembl GO_REF:0000107 NCBI chr 4:67,850,585...67,892,438
Ensembl chr 4:67,847,817...67,895,867
JBrowse link
G SPO11 SPO11 initiator of meiotic double stranded breaks IEA Ensembl GO_REF:0000107 NCBI chr17:57,730,676...57,745,875
Ensembl chr17:57,730,749...57,745,875
JBrowse link
double-strand break repair via alternative nonhomologous end joining term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HMCES 5-hydroxymethylcytosine binding, ES cell specific IEA Ensembl GO_REF:0000107 NCBI chr13:71,732,311...71,752,296
Ensembl chr13:71,732,277...71,753,504
JBrowse link
G LIG3 DNA ligase 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:40,153,105...40,205,077
Ensembl chr12:40,147,681...40,183,622
JBrowse link
G POLQ DNA polymerase theta IEA Ensembl GO_REF:0000107 NCBI chr13:138,962,634...139,108,499
Ensembl chr13:138,978,463...139,108,502
JBrowse link
double-strand break repair via break-induced replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDC45 cell division cycle 45 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:51,133,111...51,158,604
Ensembl chr14:51,133,408...51,158,606
JBrowse link
G CDC7 cell division cycle 7 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:125,431,454...125,459,367
Ensembl chr 4:125,417,098...125,475,251
JBrowse link
G GINS2 GINS complex subunit 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:3,218,655...3,252,740
Ensembl chr 6:3,218,700...3,250,352
JBrowse link
G GINS4 GINS complex subunit 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:10,656,869...10,668,664
Ensembl chr17:10,656,884...10,668,664
JBrowse link
G MCM2 minichromosome maintenance complex component 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:72,630,378...72,651,270
Ensembl chr13:72,630,380...72,657,620
JBrowse link
G MCM3 minichromosome maintenance complex component 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:46,084,648...46,104,425
Ensembl chr 7:46,084,661...46,104,375
JBrowse link
G MCM4 minichromosome maintenance complex component 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:79,674,737...79,686,964
Ensembl chr 4:79,674,737...79,687,307
JBrowse link
G MCM5 minichromosome maintenance complex component 5 IBA (PMID:21873635) GO_Central PMID:21873635
G MCM6 minichromosome maintenance complex component 6 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:15,923,638...15,978,587
Ensembl chr15:15,917,042...15,985,405
JBrowse link
G MCM7 minichromosome maintenance complex component 7 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:8,005,890...8,014,047
Ensembl chr 3:8,005,900...8,014,053
JBrowse link
G MCMDC2 minichromosome maintenance domain containing 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:67,850,585...67,892,438
Ensembl chr 4:67,847,817...67,895,867
JBrowse link
G MUS81 MUS81 structure-specific endonuclease subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:6,462,825...6,470,780
Ensembl chr 2:6,463,413...6,469,112
JBrowse link
double-strand break repair via classical nonhomologous end joining term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ERCC6 ERCC excision repair 6, chromatin remodeling factor IEA Ensembl GO_REF:0000107 NCBI chr14:89,998,125...90,075,911
Ensembl chr14:90,002,024...90,075,898
JBrowse link
G ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit IEA Ensembl GO_REF:0000107 NCBI chr16:39,704,602...39,770,330
Ensembl chr16:39,701,701...39,770,315
JBrowse link
G LIG4 DNA ligase 4 IEA Ensembl GO_REF:0000107 NCBI chr11:75,537,027...75,547,711
Ensembl chr11:75,537,032...75,547,691
JBrowse link
G UVRAG UV radiation resistance associated IEA Ensembl GO_REF:0000107 NCBI chr 9:10,088,779...10,370,857
Ensembl chr 9:10,088,798...10,369,037
JBrowse link
G XRCC6 X-ray repair cross complementing 6 IEA Ensembl GO_REF:0000107 NCBI chr 5:6,903,496...6,929,162
Ensembl chr 5:6,903,496...6,929,083
JBrowse link
G ZBTB7A zinc finger and BTB domain containing 7A IEA Ensembl GO_REF:0000107 NCBI chr 2:74,678,293...74,699,347
Ensembl chr 2:74,681,192...74,695,975
JBrowse link
double-strand break repair via homologous recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AP5S1 adaptor related protein complex 5 subunit sigma 1 IEA Ensembl GO_REF:0000107 NCBI chr17:31,896,117...31,906,833
Ensembl chr17:31,894,389...31,901,966
JBrowse link
G AP5Z1 adaptor related protein complex 5 subunit zeta 1 IEA Ensembl GO_REF:0000107 NCBI chr 3:3,622,684...3,642,370
Ensembl chr 3:3,622,696...3,642,415
JBrowse link
G ATM ATM serine/threonine kinase IEA Ensembl GO_REF:0000107 NCBI chr 9:36,620,656...36,759,555
Ensembl chr 9:36,620,658...36,759,554
JBrowse link
G AUNIP aurora kinase A and ninein interacting protein IEA Ensembl GO_REF:0000107 NCBI chr 6:83,276,977...83,316,642
Ensembl chr 6:83,272,771...83,316,419
JBrowse link
G BLM BLM RecQ like helicase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:53,317,515...53,412,649
Ensembl chr 7:53,317,540...53,412,647
JBrowse link
G BRCA1 BRCA1 DNA repair associated IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:19,788,087...19,854,515
Ensembl chr12:19,786,020...19,855,570
JBrowse link
G BRCA2 BRCA2 DNA repair associated IEA InterPro GO_REF:0000002 NCBI chr11:8,805,950...8,858,128 JBrowse link
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:29,266,234...29,306,109
Ensembl chr 3:29,266,236...29,306,116
JBrowse link
G EXD2 exonuclease 3'-5' domain containing 2 IEA Ensembl GO_REF:0000107 NCBI chr 7:92,847,958...92,909,044
Ensembl chr 7:92,848,116...92,913,771
JBrowse link
G FAN1 FANCD2 and FANCI associated nuclease 1 IEA Ensembl GO_REF:0000107 NCBI chr 1:143,919,695...143,961,678
Ensembl chr 1:143,913,550...143,961,664
JBrowse link
G FBH1 F-box DNA helicase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:65,060,714...65,108,975
Ensembl chr10:64,955,189...65,108,380
JBrowse link
G GEN1 GEN1 Holliday junction 5' flap endonuclease IEA Ensembl GO_REF:0000107 NCBI chr 3:120,067,792...120,097,305
Ensembl chr 3:120,065,973...120,097,069
JBrowse link
G HELQ helicase, POLQ like IEA Ensembl GO_REF:0000107 NCBI chr 8:135,026,117...135,061,051
Ensembl chr 8:135,026,315...135,061,162
JBrowse link
G HUS1 HUS1 checkpoint clamp component IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:48,522,914...48,539,267
Ensembl chr18:48,522,997...48,538,788
JBrowse link
G INO80 INO80 complex ATPase subunit IEA Ensembl GO_REF:0000107 NCBI chr 1:130,201,705...130,341,627
Ensembl chr 1:130,201,718...130,342,840
JBrowse link
G KASH5 KASH domain containing 5 ISO (MGI:MGI:5515826|PMID:24062341) MGI PMID:24062341 MGI:MGI:5515826 NCBI chr 6:54,476,989...54,501,099
Ensembl chr 6:54,476,877...54,501,165
JBrowse link
G LOC100522201 histone H2AX IEA Ensembl GO_REF:0000107 NCBI chr 9:46,308,824...46,310,494
Ensembl chr 9:46,309,653...46,310,084
JBrowse link
G LOC100627380 lysine-specific demethylase 4D-like ISO (PMID:24550317) MGI PMID:24550317 NCBI chr 9:27,083,348...27,085,693 JBrowse link
G MCM8 minichromosome maintenance 8 homologous recombination repair factor IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:14,790,398...14,837,420 JBrowse link
G MCM9 minichromosome maintenance 9 homologous recombination repair factor ISO (PMID:23401855)
(PMID:22771115)
(MGI:MGI:5437561|PMID:22771120), (MGI:MGI:5525985|PMID:23401855)
UniProt
UniProtKB
PMID:22771115, PMID:22771120, PMID:23401855 MGI:MGI:5437561, MGI:MGI:5525985 NCBI chr 1:43,171,906...43,268,533 JBrowse link
G MEIOB meiosis specific with OB-fold IEA Ensembl GO_REF:0000107 NCBI chr 3:40,092,689...40,133,173
Ensembl chr 3:40,092,530...40,133,171
JBrowse link
G MMS22L MMS22 like, DNA repair protein IEA
IBA
(PMID:21873635) InterPro
Ensembl
GO_Central
PMID:21873635 GO_REF:0000002, GO_REF:0000107 NCBI chr 1:64,306,078...64,459,956
Ensembl chr 1:64,303,604...64,459,933
JBrowse link
G MORF4L1 mortality factor 4 like 1 IEA Ensembl GO_REF:0000107 NCBI chr 7:48,050,050...48,075,799
Ensembl chr 7:48,050,045...48,075,796
JBrowse link
G MRE11 MRE11 homolog, double strand break repair nuclease IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:26,572,352...26,634,596
Ensembl chr 9:26,572,360...26,634,568
JBrowse link
G NABP1 nucleic acid binding protein 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:96,313,884...96,322,108
Ensembl chr15:96,313,903...96,335,191
JBrowse link
G NABP2 nucleic acid binding protein 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:21,624,654...21,631,716
Ensembl chr 5:21,624,762...21,631,707
JBrowse link
G NBN nibrin IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:46,787,664...46,854,331
Ensembl chr 4:46,787,659...46,903,999
JBrowse link
G NSMCE1 NSE1 homolog, SMC5-SMC6 complex component IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:19,609,796...19,649,869
Ensembl chr 3:19,608,744...19,653,281
JBrowse link
G NSMCE2 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr 4:14,359,323...14,598,192
Ensembl chr 4:14,358,649...14,598,092
JBrowse link
G NUCKS1 nuclear casein kinase and cyclin dependent kinase substrate 1 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 9:66,398,845...66,435,548
Ensembl chr 9:66,398,227...66,435,577
JBrowse link
G PALB2 partner and localizer of BRCA2 IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 3:22,586,881...22,612,837
Ensembl chr 3:22,586,856...22,612,835
JBrowse link
G POLL DNA polymerase lambda IEA Ensembl GO_REF:0000107 NCBI chr14:112,608,558...112,617,348
Ensembl chr14:112,606,193...112,617,319
JBrowse link
G POLN DNA polymerase nu IEA Ensembl GO_REF:0000107 NCBI chr 8:1,073,337...1,198,538
Ensembl chr 8:1,069,054...1,198,445
JBrowse link
G PSMD14 proteasome 26S subunit, non-ATPase 14 IEA Ensembl GO_REF:0000107 NCBI chr15:68,107,379...68,208,884
Ensembl chr15:68,107,546...68,208,884
JBrowse link
G RAD21L1 RAD21 cohesin complex component like 1 ISO (MGI:MGI:5428050|PMID:22711701) MGI PMID:22711701 MGI:MGI:5428050 NCBI chr17:34,035,526...34,064,215 JBrowse link
G RAD51 RAD51 recombinase ISO (MGI:MGI:3525800|PMID:15359272)
(PMID:16428451)
(MGI:MGI:3511388|PMID:15485900)
(PMID:22778135), (PMID:23509288), (PMID:26681308)
MGI
RGD
BHF-UCL
PMID:14755242, PMID:15359272, PMID:15485900, PMID:16428451, PMID:22778135, PMID:23509288, PMID:26681308 MGI:MGI:3511388, MGI:MGI:3525800, RGD:9831188 NCBI chr 1:130,592,414...130,640,326
Ensembl chr 1:130,586,647...130,640,136
JBrowse link
G RAD51AP1 RAD51 associated protein 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:65,872,277...65,897,210
Ensembl chr 5:65,872,281...65,897,215
JBrowse link
G RAD51B RAD51 paralog B IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 7:91,592,413...92,301,383
Ensembl chr 7:91,592,424...92,345,294
JBrowse link
G RAD51C RAD51 paralog C ISO (PMID:23149936) UniProtKB PMID:23149936 NCBI chr12:34,975,949...35,018,112
Ensembl chr12:34,975,957...35,019,018
JBrowse link
G RAD51D RAD51 paralog D IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:40,054,175...40,072,831 JBrowse link
G RAD52 RAD52 homolog, DNA repair protein IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:68,140,846...68,223,587
Ensembl chr 5:68,133,699...68,223,662
JBrowse link
G RAD54B RAD54 homolog B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:42,249,482...42,369,408
Ensembl chr 4:42,249,512...42,369,447
JBrowse link
G RAD54L RAD54 like ISO (MGI:MGI:3836659|PMID:19061978)
(MGI:MGI:3615835|PMID:16428451)
MGI PMID:16428451, PMID:19061978 MGI:MGI:3615835, MGI:MGI:3836659 NCBI chr 6:165,156,833...165,184,641
Ensembl chr 6:165,152,978...165,184,776
JBrowse link
G RBBP8 RB binding protein 8, endonuclease IEA InterPro GO_REF:0000002 NCBI chr 6:107,923,921...108,020,067
Ensembl chr 6:107,924,002...108,022,669
JBrowse link
G REC8 REC8 meiotic recombination protein ISO (MGI:MGI:5428050|PMID:22711701) MGI PMID:22711701 MGI:MGI:5428050 NCBI chr 7:75,118,743...75,127,759
Ensembl chr 7:75,118,744...75,139,630
JBrowse link
G RECQL RecQ like helicase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:51,953,460...51,995,619
Ensembl chr 5:51,953,184...52,003,742
JBrowse link
G RECQL5 RecQ like helicase 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:5,732,336...5,770,136
Ensembl chr12:5,732,348...5,770,136
JBrowse link
G REV3L REV3 like, DNA directed polymerase zeta catalytic subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:77,196,592...77,400,551
Ensembl chr 1:77,197,409...77,400,137
JBrowse link
G RFFL ring finger and FYVE like domain containing E3 ubiquitin protein ligase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:40,075,259...40,151,034 JBrowse link
G RFWD3 ring finger and WD repeat domain 3 IEA Ensembl GO_REF:0000107 NCBI chr 6:12,952,243...12,994,053
Ensembl chr 6:12,952,350...12,994,050
JBrowse link
G RMI1 RecQ mediated genome instability 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:30,952,536...30,975,549
Ensembl chr10:30,952,531...30,975,512
JBrowse link
G RNF138 ring finger protein 138 IEA Ensembl GO_REF:0000107 NCBI chr 6:115,927,021...115,975,754
Ensembl chr 6:115,926,774...115,978,724
JBrowse link
G RPA1 replication protein A1 IEA Ensembl GO_REF:0000107 NCBI chr12:48,009,652...48,048,744
Ensembl chr12:48,009,724...48,048,734
JBrowse link
G RPA2 replication protein A2 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 6:85,032,604...85,045,899
Ensembl chr 6:85,031,578...85,045,916
JBrowse link
G RPA3 replication protein A3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:77,910,876...77,914,872
Ensembl chr 9:77,910,881...77,937,060
JBrowse link
G SAMHD1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 IEA Ensembl GO_REF:0000107 NCBI chr17:40,117,348...40,171,935
Ensembl chr17:40,112,978...40,171,895
JBrowse link
G SEM1 SEM1 26S proteasome complex subunit ISO (MGI:MGI:3525800|PMID:15359272) MGI PMID:15359272 MGI:MGI:3525800 NCBI chr 9:76,324,550...76,349,261 JBrowse link
G SFPQ splicing factor proline and glutamine rich IEA Ensembl GO_REF:0000107 NCBI chr 6:91,391,552...91,408,236
Ensembl chr 6:91,391,555...91,408,219
JBrowse link
G SFR1 SWI5 dependent homologous recombination repair protein 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:115,064,955...115,073,856
Ensembl chr14:115,065,057...115,073,856
JBrowse link
G SLX1A SLX1 homolog A, structure-specific endonuclease subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:18,346,501...18,349,509 JBrowse link
G SLX4 SLX4 structure-specific endonuclease subunit IEA Ensembl GO_REF:0000107 NCBI chr 3:38,646,904...38,670,173
Ensembl chr 3:38,646,938...38,670,166
JBrowse link
G SMC5 structural maintenance of chromosomes 5 IEA InterPro GO_REF:0000002 NCBI chr 1:223,560,271...223,653,370 JBrowse link
G SPIDR scaffold protein involved in DNA repair IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:79,874,937...80,190,744
Ensembl chr 4:79,874,828...80,190,655
JBrowse link
G SWI5 SWI5 homologous recombination repair protein ISO (PMID:21252223)
(MGI:MGI:4868525|PMID:20976249)
UniProtKB PMID:20976249, PMID:21252223 MGI:MGI:4868525 NCBI chr 1:268,720,232...268,726,527
Ensembl chr 1:268,719,554...268,726,527
JBrowse link
G SWSAP1 SWIM-type zinc finger 7 associated protein 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:70,060,186...70,061,989
Ensembl chr 2:70,060,193...70,063,261
JBrowse link
G TONSL tonsoku like, DNA repair protein IEA Ensembl GO_REF:0000107 NCBI chr 4:349,992...361,749
Ensembl chr 4:348,652...362,200
JBrowse link
G UBE2N ubiquitin conjugating enzyme E2 N ISO (PMID:17349954) HGNC PMID:17349954 NCBI chr 5:89,673,306...89,716,345 JBrowse link
G WDR48 WD repeat domain 48 IEA Ensembl GO_REF:0000107 NCBI chr13:23,735,566...23,786,312
Ensembl chr13:23,735,584...23,786,309
JBrowse link
G WRN WRN RecQ like helicase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:53,966,968...54,094,855
Ensembl chr15:53,966,972...54,094,587
JBrowse link
G XRCC2 X-ray repair cross complementing 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:4,808,428...4,834,281
Ensembl chr18:4,808,469...4,835,804
JBrowse link
G XRCC3 X-ray repair cross complementing 3 ISO (PMID:23149936) UniProtKB PMID:23149936
G YY1 YY1 transcription factor IEA Ensembl GO_REF:0000107 NCBI chr 7:121,132,168...121,170,699
Ensembl chr 7:121,131,917...121,170,697
JBrowse link
G ZFYVE26 zinc finger FYVE-type containing 26 IEA Ensembl
InterPro
GO_REF:0000002, GO_REF:0000107 NCBI chr 7:91,518,444...91,590,480
Ensembl chr 7:91,518,451...91,591,047
JBrowse link
G ZSWIM7 zinc finger SWIM-type containing 7 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:59,418,905...59,434,689
Ensembl chr12:59,418,937...59,444,108
JBrowse link
double-strand break repair via nonhomologous end joining term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CYREN cell cycle regulator of NHEJ ISO (PMID:24610814) UniProtKB PMID:24610814 NCBI chr18:14,127,724...14,133,486 JBrowse link
G DCLRE1A DNA cross-link repair 1A IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:124,144,272...124,162,379
Ensembl chr14:124,144,270...124,162,241
JBrowse link
G DCLRE1B DNA cross-link repair 1B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:106,646,591...106,656,490
Ensembl chr 4:106,646,010...106,656,452
JBrowse link
G DCLRE1C DNA cross-link repair 1C IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:46,820,016...46,863,848
Ensembl chr10:46,820,051...46,868,030
JBrowse link
G DNTT DNA nucleotidylexotransferase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:107,750,796...107,784,626
Ensembl chr14:107,750,796...107,784,626
JBrowse link
G ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit ISO (PMID:14690602) BHF-UCL PMID:14690602 NCBI chr 6:51,783,537...51,808,898 JBrowse link
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit IEA Ensembl GO_REF:0000107 NCBI chr 3:29,266,234...29,306,109
Ensembl chr 3:29,266,236...29,306,116
JBrowse link
G KDM2A lysine demethylase 2A IEA Ensembl GO_REF:0000107 NCBI chr 2:5,238,690...5,357,799
Ensembl chr 2:5,240,287...5,357,164
JBrowse link
G LIG1 DNA ligase 1 ISO (MGI:MGI:5014103|PMID:21655080) MGI PMID:21655080 MGI:MGI:5014103 NCBI chr 6:53,620,483...53,660,020
Ensembl chr 6:53,620,483...53,686,562
JBrowse link
G LIG3 DNA ligase 3 ISO (MGI:MGI:5014103|PMID:21655080) MGI PMID:21655080 MGI:MGI:5014103 NCBI chr12:40,153,105...40,205,077
Ensembl chr12:40,147,681...40,183,622
JBrowse link
G LIG4 DNA ligase 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:75,537,027...75,547,711
Ensembl chr11:75,537,032...75,547,691
JBrowse link
G LOC100514009 histone-lysine N-methyltransferase SETMAR ISO (PMID:16332963)
(PMID:18263876), (PMID:21187428), (PMID:24573677)
UniProtKB PMID:16332963, PMID:18263876, PMID:21187428, PMID:24573677 NCBI chr13:60,914,412...60,933,064 JBrowse link
G MLH1 mutL homolog 1 IEA Ensembl GO_REF:0000107 NCBI chr13:21,791,276...21,877,789
Ensembl chr13:21,791,201...21,877,757
JBrowse link
G MRE11 MRE11 homolog, double strand break repair nuclease IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:26,572,352...26,634,596
Ensembl chr 9:26,572,360...26,634,568
JBrowse link
G NHEJ1 non-homologous end joining factor 1 IEA Ensembl GO_REF:0000107 NCBI chr15:121,100,624...121,190,086
Ensembl chr15:121,100,611...121,190,062
JBrowse link
G NSMCE2 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase NOT ISO (PMID:16810316) UniProtKB PMID:16810316 NCBI chr 4:14,359,323...14,598,192
Ensembl chr 4:14,358,649...14,598,092
JBrowse link
G PAXX PAXX non-homologous end joining factor IEA Ensembl
InterPro
GO_REF:0000002, GO_REF:0000107
G POLA1 DNA polymerase alpha 1, catalytic subunit ISO (PMID:11470886) UniProtKB PMID:11470886 NCBI chr  X:20,756,674...21,064,265
Ensembl chr  X:20,756,201...21,102,061
JBrowse link
G POLB DNA polymerase beta IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:11,356,130...11,388,122
Ensembl chr17:11,356,129...11,388,821
JBrowse link
G POLL DNA polymerase lambda IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:112,608,558...112,617,348
Ensembl chr14:112,606,193...112,617,319
JBrowse link
G POLM DNA polymerase mu IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:51,077,845...51,091,354 JBrowse link
G PRKDC protein kinase, DNA-activated, catalytic subunit IEA InterPro
Ensembl
GO_REF:0000002, GO_REF:0000107 NCBI chr 4:79,687,375...79,850,146
Ensembl chr 4:79,687,359...79,847,281
JBrowse link
G PRPF19 pre-mRNA processing factor 19 IEA Ensembl GO_REF:0000107 NCBI chr 2:10,851,779...10,860,315
Ensembl chr 2:10,851,579...10,860,838
JBrowse link
G PSMD14 proteasome 26S subunit, non-ATPase 14 IEA Ensembl GO_REF:0000107 NCBI chr15:68,107,379...68,208,884
Ensembl chr15:68,107,546...68,208,884
JBrowse link
G RNF8 ring finger protein 8 ISO (MGI:MGI:5293246|PMID:21857671), (MGI:MGI:5465398|PMID:22266820) UniProtKB PMID:21857671, PMID:22266820 MGI:MGI:5293246, MGI:MGI:5465398 NCBI chr 7:32,931,786...32,969,536
Ensembl chr 7:32,931,786...33,063,739
JBrowse link
G SMARCAL1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1 IEA Ensembl GO_REF:0000107 NCBI chr15:118,627,734...118,688,005
Ensembl chr15:118,629,238...118,687,940
JBrowse link
G SMC5 structural maintenance of chromosomes 5 NOT ISO (PMID:16810316) UniProtKB PMID:16810316 NCBI chr 1:223,560,271...223,653,370 JBrowse link
G TMEM169 transmembrane protein 169 IEA InterPro
Ensembl
GO_REF:0000002, GO_REF:0000107 NCBI chr15:118,335,915...118,352,713
Ensembl chr15:118,335,925...118,452,296
JBrowse link
G TP53BP1 tumor protein p53 binding protein 1 IEA Ensembl GO_REF:0000107 NCBI chr 1:127,958,500...128,032,370
Ensembl chr 1:127,958,518...128,028,718
JBrowse link
G XRCC1 X-ray repair cross complementing 1 IEA Ensembl GO_REF:0000107 NCBI chr 6:50,403,691...50,425,730
Ensembl chr 6:50,403,686...50,425,710
JBrowse link
G XRCC4 X-ray repair cross complementing 4 ISO (PMID:12517771)
(PMID:9809069)
(MGI:MGI:3761960|PMID:17713479)
(MGI:MGI:3758502|PMID:14690602)
UniProtKB
MGI
BHF-UCL
PMID:9809069, PMID:12517771, PMID:14690602, PMID:17713479 MGI:MGI:3758502, MGI:MGI:3761960 NCBI chr 2:91,358,348...91,643,697
Ensembl chr 2:91,358,399...91,811,208
JBrowse link
G XRCC5 X-ray repair cross complementing 5 IEA
IBA
(PMID:21873635) InterPro
Ensembl
GO_Central
PMID:21873635 GO_REF:0000002, GO_REF:0000107 NCBI chr15:118,354,943...118,451,974
Ensembl chr15:118,335,925...118,452,296
JBrowse link
G XRCC6 X-ray repair cross complementing 6 IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 5:6,903,496...6,929,162
Ensembl chr 5:6,903,496...6,929,083
JBrowse link
double-strand break repair via single-strand annealing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RAD52 RAD52 homolog, DNA repair protein IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 5:68,140,846...68,223,587
Ensembl chr 5:68,133,699...68,223,662
JBrowse link
double-strand break repair via synthesis-dependent strand annealing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FANCM FA complementation group M IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:175,333,965...175,402,065
Ensembl chr 1:175,334,047...175,445,650
JBrowse link
G RAD54L RAD54 like IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:165,156,833...165,184,641
Ensembl chr 6:165,152,978...165,184,776
JBrowse link
G XRCC3 X-ray repair cross complementing 3 IBA (PMID:21873635) GO_Central PMID:21873635
error-free postreplication DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G UBE2V1 ubiquitin conjugating enzyme E2 V1 ISO (MGI:MGI:2136126|PMID:11406273) MGI PMID:11406273 MGI:MGI:2136126 NCBI chr17:51,630,233...51,664,498
Ensembl chr17:51,629,964...51,666,701
JBrowse link
G UBE2V2 ubiquitin conjugating enzyme E2 V2 IEA Ensembl GO_REF:0000107 NCBI chr 4:79,621,343...79,652,502
Ensembl chr 4:79,419,358...79,652,471
JBrowse link
error-free translesion synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AFF3 AF4/FMR2 family member 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:54,135,476...54,730,201
Ensembl chr 3:54,135,532...54,862,224
JBrowse link
G POLD1 DNA polymerase delta 1, catalytic subunit ISO (PMID:24191025) UniProt PMID:24191025 NCBI chr 6:55,247,799...55,272,087
Ensembl chr 6:55,247,861...55,272,166
JBrowse link
G POLDIP2 DNA polymerase delta interacting protein 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:44,626,447...44,636,302
Ensembl chr12:44,625,603...44,636,289
JBrowse link
G REV1 REV1 DNA directed polymerase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:54,775,602...54,862,704
Ensembl chr 3:54,135,532...54,862,224
JBrowse link
error-prone translesion synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AFF3 AF4/FMR2 family member 3 IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 3:54,135,476...54,730,201
Ensembl chr 3:54,135,532...54,862,224
JBrowse link
G POLE2 DNA polymerase epsilon 2, accessory subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:179,495,278...179,529,891
Ensembl chr 1:179,482,207...179,529,896
JBrowse link
G POLH DNA polymerase eta IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:38,569,211...38,601,794
Ensembl chr 7:38,567,775...38,601,790
JBrowse link
G POLK DNA polymerase kappa IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:84,555,648...84,619,490
Ensembl chr 2:84,538,050...84,656,234
JBrowse link
G PRIMPOL primase and DNA directed polymerase IEA Ensembl GO_REF:0000107 NCBI chr15:45,764,261...45,851,052
Ensembl chr15:45,709,710...45,851,421
JBrowse link
G REV1 REV1 DNA directed polymerase IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 3:54,775,602...54,862,704
Ensembl chr 3:54,135,532...54,862,224
JBrowse link
G REV3L REV3 like, DNA directed polymerase zeta catalytic subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:77,196,592...77,400,551
Ensembl chr 1:77,197,409...77,400,137
JBrowse link
interstrand cross-link repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCLRE1A DNA cross-link repair 1A IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:124,144,272...124,162,379
Ensembl chr14:124,144,270...124,162,241
JBrowse link
G DCLRE1B DNA cross-link repair 1B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:106,646,591...106,656,490
Ensembl chr 4:106,646,010...106,656,452
JBrowse link
G DCLRE1C DNA cross-link repair 1C IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:46,820,016...46,863,848
Ensembl chr10:46,820,051...46,868,030
JBrowse link
G ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit ISO (MGI:MGI:5506835|PMID:23637614) MGI PMID:23637614 MGI:MGI:5506835 NCBI chr 6:51,783,537...51,808,898 JBrowse link
G ERCC6L2 ERCC excision repair 6 like 2 ISO (PMID:24507776) UniProtKB PMID:24507776 NCBI chr10:26,112,019...26,264,759
Ensembl chr10:26,112,032...26,264,175
JBrowse link
G EXO5 exonuclease 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:170,651,217...170,657,125
Ensembl chr 6:170,649,495...170,657,050
JBrowse link
G FAAP100 FA core complex associated protein 100 IEA InterPro GO_REF:0000002 NCBI chr12:1,288,371...1,297,147
Ensembl chr12:1,288,378...1,297,147
JBrowse link
G FAAP20 FA core complex associated protein 20 ISO (PMID:22266823), (PMID:22396592), (PMID:22705371) UniProtKB PMID:22266823, PMID:22396592, PMID:22705371 NCBI chr 6:64,160,760...64,169,663 JBrowse link
G FAAP24 FA core complex associated protein 24 IEA InterPro GO_REF:0000002 NCBI chr 6:42,815,475...42,819,116
Ensembl chr 6:42,815,527...42,819,654
JBrowse link
G FAN1 FANCD2 and FANCI associated nuclease 1 IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 1:143,919,695...143,961,678
Ensembl chr 1:143,913,550...143,961,664
JBrowse link
G FANCA FA complementation group A IEA InterPro GO_REF:0000002 NCBI chr 6:253,207...300,159
Ensembl chr 6:253,224...300,155
JBrowse link
G FANCB FA complementation group B IEA InterPro GO_REF:0000002 NCBI chr  X:11,386,360...11,408,958
Ensembl chr  X:10,960,996...11,409,057
JBrowse link
G FANCD2 FA complementation group D2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:66,241,951...66,308,601
Ensembl chr13:66,241,673...66,310,436
JBrowse link
G FANCE FA complementation group E IEA InterPro GO_REF:0000002 Ensembl chr 7:31,313,388...31,330,617 JBrowse link
G FANCF FA complementation group F IEA InterPro GO_REF:0000002 NCBI chr 2:36,884,701...36,886,661
Ensembl chr 2:36,884,726...36,885,856
JBrowse link
G FANCG FA complementation group G IEA InterPro GO_REF:0000002 NCBI chr 1:235,871,073...235,879,604
Ensembl chr 1:235,871,349...235,887,992
JBrowse link
G FANCL FA complementation group L IEA InterPro GO_REF:0000002 NCBI chr 3:83,136,355...83,436,948
Ensembl chr 3:83,337,208...83,436,944
JBrowse link
G FANCM FA complementation group M IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:175,333,965...175,402,065
Ensembl chr 1:175,334,047...175,445,650
JBrowse link
G HROB homologous recombination factor with OB-fold IEA Ensembl GO_REF:0000107 NCBI chr12:19,044,569...19,077,877
Ensembl chr12:19,043,984...19,077,829
JBrowse link
G MSH6 mutS homolog 6 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:92,792,590...92,814,154
Ensembl chr 3:92,785,664...92,814,128
JBrowse link
G NUCKS1 nuclear casein kinase and cyclin dependent kinase substrate 1 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 9:66,398,845...66,435,548
Ensembl chr 9:66,398,227...66,435,577
JBrowse link
G POLN DNA polymerase nu IEA Ensembl GO_REF:0000107 NCBI chr 8:1,073,337...1,198,538
Ensembl chr 8:1,069,054...1,198,445
JBrowse link
G RAD51 RAD51 recombinase IEA Ensembl GO_REF:0000107 NCBI chr 1:130,592,414...130,640,326
Ensembl chr 1:130,586,647...130,640,136
JBrowse link
G RAD51AP1 RAD51 associated protein 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:65,872,277...65,897,210
Ensembl chr 5:65,872,281...65,897,215
JBrowse link
G RAD51D RAD51 paralog D ISO (MGI:MGI:3574680|PMID:15781618) MGI PMID:15781618 MGI:MGI:3574680 NCBI chr12:40,054,175...40,072,831 JBrowse link
G RFWD3 ring finger and WD repeat domain 3 IEA Ensembl
InterPro
GO_REF:0000002, GO_REF:0000107 NCBI chr 6:12,952,243...12,994,053
Ensembl chr 6:12,952,350...12,994,050
JBrowse link
G SLX4 SLX4 structure-specific endonuclease subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:38,646,904...38,670,173
Ensembl chr 3:38,646,938...38,670,166
JBrowse link
G VCP valosin containing protein ISS UniProt GO_REF:0000024 NCBI chr 1:235,854,532...235,869,712
Ensembl chr 1:235,796,446...235,876,321
JBrowse link
G XRCC3 X-ray repair cross complementing 3 IEA Ensembl GO_REF:0000107
late meiotic recombination nodule assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MCMDC2 minichromosome maintenance domain containing 2 IEA Ensembl GO_REF:0000107 NCBI chr 4:67,850,585...67,892,438
Ensembl chr 4:67,847,817...67,895,867
JBrowse link
meiotic DNA double-strand break processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SLX4 SLX4 structure-specific endonuclease subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:38,646,904...38,670,173
Ensembl chr 3:38,646,938...38,670,166
JBrowse link
G SPO11 SPO11 initiator of meiotic double stranded breaks IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:57,730,676...57,745,875
Ensembl chr17:57,730,749...57,745,875
JBrowse link
meiotic DNA double-strand break processing involved in reciprocal meiotic recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRIP1 BRCA1 interacting protein C-terminal helicase 1 IEA Ensembl GO_REF:0000107 NCBI chr12:36,498,138...36,639,847
Ensembl chr12:36,443,697...36,634,088
JBrowse link
G C1H14orf39 chromosome 1 C14orf39 homolog IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:189,330,137...189,471,874
Ensembl chr 1:189,407,491...189,471,537
JBrowse link
meiotic DNA recombinase assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RAD51C RAD51 paralog C IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:34,975,949...35,018,112
Ensembl chr12:34,975,957...35,019,018
JBrowse link
meiotic DNA repair synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SPATA22 spermatogenesis associated 22 IEA InterPro GO_REF:0000002 NCBI chr12:49,573,050...49,609,232 JBrowse link
G SYCP1 synaptonemal complex protein 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:105,592,354...105,730,413
Ensembl chr 4:105,592,691...105,729,774
JBrowse link
G SYCP3 synaptonemal complex protein 3 ISO (MGI:MGI:5315075|PMID:22164254) MGI PMID:22164254 MGI:MGI:5315075 NCBI chr 5:82,492,744...82,501,068
Ensembl chr 5:82,493,142...82,501,225
JBrowse link
G TEX12 testis expressed 12 IEA Ensembl GO_REF:0000107 NCBI chr 9:39,864,093...39,869,572
Ensembl chr 9:39,864,177...39,916,486
JBrowse link
meiotic mismatch repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MSH3 mutS homolog 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:89,255,647...89,456,102
Ensembl chr 2:89,250,189...89,453,936
JBrowse link
G MSH4 mutS homolog 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:137,410,820...137,524,459
Ensembl chr 6:137,410,919...137,534,233
JBrowse link
G MSH5 mutS homolog 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:23,852,864...23,872,760 JBrowse link
G MSH6 mutS homolog 6 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:92,792,590...92,814,154
Ensembl chr 3:92,785,664...92,814,128
JBrowse link
meiotic recombination nodule assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MCMDC2 minichromosome maintenance domain containing 2 ISO (MGI:MGI:5805564|PMID:27760146) MGI PMID:27760146 MGI:MGI:5805564 NCBI chr 4:67,850,585...67,892,438
Ensembl chr 4:67,847,817...67,895,867
JBrowse link
mismatch repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACYP1 acylphosphatase 1 IEA
IBA
(PMID:21873635) Ensembl
GO_Central
InterPro
PMID:21873635 GO_REF:0000002, GO_REF:0000107 NCBI chr 7:98,220,318...98,265,187
Ensembl chr 7:98,220,315...98,259,624
Ensembl chr 7:98,220,315...98,259,624
JBrowse link
G EXO1 exonuclease 1 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr10:15,317,555...15,360,593
Ensembl chr10:15,317,581...15,359,839
JBrowse link
G MLH1 mutL homolog 1 IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr13:21,791,276...21,877,789
Ensembl chr13:21,791,201...21,877,757
JBrowse link
G MSH2 mutS homolog 2 IEA
IBA
(PMID:21873635) UniProt
GO_Central
PMID:21873635 GO_REF:0000104 NCBI chr 3:93,082,958...93,163,556
Ensembl chr 3:93,081,219...93,163,628
JBrowse link
G MSH3 mutS homolog 3 IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 2:89,255,647...89,456,102
Ensembl chr 2:89,250,189...89,453,936
JBrowse link
G MSH5 mutS homolog 5 IEA InterPro GO_REF:0000002 NCBI chr 7:23,852,864...23,872,760 JBrowse link
G MSH6 mutS homolog 6 IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 3:92,792,590...92,814,154
Ensembl chr 3:92,785,664...92,814,128
JBrowse link
G MUTYH mutY DNA glycosylase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:166,002,853...166,012,191 JBrowse link
G PCNA proliferating cell nuclear antigen IEA Ensembl GO_REF:0000107 NCBI chr17:14,137,746...14,142,584
Ensembl chr17:14,125,814...14,185,276
JBrowse link
G PMS1 PMS1 homolog 1, mismatch repair system component IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr15:94,351,603...94,476,505
Ensembl chr15:94,351,324...94,601,889
JBrowse link
G PMS2 PMS1 homolog 2, mismatch repair system component IBA
IEA
(PMID:21873635) GO_Central
Ensembl
InterPro
PMID:21873635 GO_REF:0000002, GO_REF:0000107 NCBI chr 3:5,118,002...5,145,634
Ensembl chr 3:5,113,230...5,145,634
JBrowse link
G RNASEH2A ribonuclease H2 subunit A IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 2:66,192,785...66,208,417
Ensembl chr 2:66,193,192...66,208,478
JBrowse link
G RPA1 replication protein A1 IEA Ensembl GO_REF:0000107 NCBI chr12:48,009,652...48,048,744
Ensembl chr12:48,009,724...48,048,734
JBrowse link
G RPA2 replication protein A2 IEA Ensembl GO_REF:0000107 NCBI chr 6:85,032,604...85,045,899
Ensembl chr 6:85,031,578...85,045,916
JBrowse link
G RPA3 replication protein A3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:77,910,876...77,914,872
Ensembl chr 9:77,910,881...77,937,060
JBrowse link
G SETD2 SET domain containing 2, histone lysine methyltransferase IEA Ensembl GO_REF:0000107 NCBI chr13:29,884,708...29,996,285
Ensembl chr13:29,884,712...29,996,360
JBrowse link
G TDG thymine DNA glycosylase IEA Ensembl GO_REF:0000107 NCBI chr 5:80,473,233...80,492,295
Ensembl chr 5:80,473,233...80,492,287
JBrowse link
G XPC XPC complex subunit, DNA damage recognition and repair factor IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:70,348,841...70,397,194
Ensembl chr13:70,348,864...70,397,782
JBrowse link
mismatch repair involved in maintenance of fidelity involved in DNA-dependent DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MCM9 minichromosome maintenance 9 homologous recombination repair factor ISO (MGI:MGI:5705200|PMID:26300262)
(PMID:26300262)
UniProt PMID:26300262 MGI:MGI:5705200 NCBI chr 1:43,171,906...43,268,533 JBrowse link
mitochondrial DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHCHD4 coiled-coil-helix-coiled-coil-helix domain containing 4 ISO (MGI:MGI:5516376|PMID:24101517) MGI PMID:24101517 MGI:MGI:5516376 NCBI chr13:70,417,326...70,428,923
Ensembl chr13:70,417,326...70,428,922
JBrowse link
G DNA2 DNA replication helicase/nuclease 2 IEA Ensembl GO_REF:0000107 NCBI chr14:71,550,405...71,607,067
Ensembl chr14:71,549,815...71,651,089
JBrowse link
G LIG3 DNA ligase 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:40,153,105...40,205,077
Ensembl chr12:40,147,681...40,183,622
JBrowse link
G MGME1 mitochondrial genome maintenance exonuclease 1 IEA UniProt GO_REF:0000104 NCBI chr17:26,381,561...26,395,201
Ensembl chr17:26,369,875...26,395,192
JBrowse link
G PARP1 poly(ADP-ribose) polymerase 1 IEA Ensembl GO_REF:0000107 NCBI chr10:14,203,157...14,241,164
Ensembl chr10:14,203,159...14,241,197
JBrowse link
G PRIMPOL primase and DNA directed polymerase IEA Ensembl GO_REF:0000107 NCBI chr15:45,764,261...45,851,052
Ensembl chr15:45,709,710...45,851,421
JBrowse link
G TP53 tumor protein p53 IEA Ensembl GO_REF:0000107 NCBI chr12:52,939,643...52,953,786
Ensembl chr12:52,939,643...52,953,819
JBrowse link
mitochondrial double-strand break repair via homologous recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MRE11 MRE11 homolog, double strand break repair nuclease IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:26,572,352...26,634,596
Ensembl chr 9:26,572,360...26,634,568
JBrowse link
negative regulation of DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RPS3 ribosomal protein S3 IEA Ensembl GO_REF:0000107 NCBI chr 9:9,612,939...9,630,404
Ensembl chr 9:9,616,456...9,630,413
JBrowse link
negative regulation of double-strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OTUB1 OTU deubiquitinase, ubiquitin aldehyde binding 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:8,088,528...8,095,555
Ensembl chr 2:8,087,828...8,095,609
JBrowse link
G OTUB2 OTU deubiquitinase, ubiquitin aldehyde binding 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:115,304,809...115,326,055
Ensembl chr 7:115,304,870...115,327,056
JBrowse link
G RNF169 ring finger protein 169 IEA Ensembl GO_REF:0000107 NCBI chr 9:9,069,776...9,177,367
Ensembl chr 9:9,069,192...9,173,915
JBrowse link
G TRIP12 thyroid hormone receptor interactor 12 IEA Ensembl GO_REF:0000107 NCBI chr15:130,784,567...130,940,497
Ensembl chr15:130,787,581...130,939,575
JBrowse link
G TWIST1 twist family bHLH transcription factor 1 ISO (PMID:17690110) BHF-UCL PMID:17690110 NCBI chr 9:88,286,911...88,290,131 JBrowse link
G UBR5 ubiquitin protein ligase E3 component n-recognin 5 IEA Ensembl GO_REF:0000107 NCBI chr 4:34,645,794...34,794,510
Ensembl chr 4:34,645,751...34,793,940
JBrowse link
negative regulation of double-strand break repair via homologous recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CGAS cyclic GMP-AMP synthase ISS
IBA
(PMID:21873635) UniProt
GO_Central
PMID:21873635 GO_REF:0000024 NCBI chr 1:92,483,253...92,500,376
Ensembl chr 1:92,483,327...92,504,327
JBrowse link
G FANCB FA complementation group B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:11,386,360...11,408,958
Ensembl chr  X:10,960,996...11,409,057
JBrowse link
G FBH1 F-box DNA helicase 1 IEA Ensembl GO_REF:0000107 NCBI chr10:65,060,714...65,108,975
Ensembl chr10:64,955,189...65,108,380
JBrowse link
G HELB DNA helicase B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:30,645,378...30,696,488
Ensembl chr 5:30,645,634...30,697,232
JBrowse link
G KLHL15 kelch like family member 15 IEA Ensembl GO_REF:0000107 NCBI chr  X:20,088,208...20,130,452
Ensembl chr  X:20,091,896...20,129,561
JBrowse link
G MAD2L2 mitotic arrest deficient 2 like 2 IEA Ensembl GO_REF:0000107 NCBI chr 6:71,773,680...71,779,192
Ensembl chr 6:71,773,681...71,779,183
JBrowse link
G MAGEF1 MAGE family member F1 IEA Ensembl GO_REF:0000107 NCBI chr13:122,600,984...122,602,700
Ensembl chr13:122,598,927...122,602,647
JBrowse link
G PARPBP PARP1 binding protein IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 5:82,018,857...82,091,946
Ensembl chr 5:81,878,891...82,091,373
JBrowse link
G POLQ DNA polymerase theta IEA Ensembl GO_REF:0000107 NCBI chr13:138,962,634...139,108,499
Ensembl chr13:138,978,463...139,108,502
JBrowse link
G RADX RPA1 related single stranded DNA binding protein, X-linked IEA Ensembl GO_REF:0000107 NCBI chr  X:87,025,603...87,103,503
Ensembl chr  X:87,025,600...87,103,501
JBrowse link
G RECQL5 RecQ like helicase 5 IEA Ensembl GO_REF:0000107 NCBI chr12:5,732,336...5,770,136
Ensembl chr12:5,732,348...5,770,136
JBrowse link
G RIF1 replication timing regulatory factor 1 IEA Ensembl GO_REF:0000107 NCBI chr15:769,518...832,036
Ensembl chr15:774,189...832,010
JBrowse link
G RMI2 RecQ mediated genome instability 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:31,807,717...31,814,869
Ensembl chr 3:31,808,015...31,814,843
JBrowse link
G SHLD1 shieldin complex subunit 1 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr17:14,610,723...14,706,082
Ensembl chr17:14,601,193...14,707,906
JBrowse link
G SHLD2 shieldin complex subunit 2 IEA Ensembl GO_REF:0000107 NCBI chr14:88,005,599...88,121,155
Ensembl chr14:88,005,590...88,121,383
JBrowse link
G SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 IEA Ensembl GO_REF:0000107 NCBI chr 6:103,809,732...103,986,057
Ensembl chr 6:103,808,066...103,986,144
JBrowse link
G TP53BP1 tumor protein p53 binding protein 1 IEA Ensembl GO_REF:0000107 NCBI chr 1:127,958,500...128,032,370
Ensembl chr 1:127,958,518...128,028,718
JBrowse link
G UBQLN4 ubiquilin 4 IEA Ensembl GO_REF:0000107 NCBI chr 4:93,976,386...93,994,830
Ensembl chr 4:93,976,431...93,994,830
JBrowse link
negative regulation of double-strand break repair via nonhomologous end joining term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AUNIP aurora kinase A and ninein interacting protein IEA Ensembl GO_REF:0000107 NCBI chr 6:83,276,977...83,316,642
Ensembl chr 6:83,272,771...83,316,419
JBrowse link
G CYREN cell cycle regulator of NHEJ ISO (PMID:28959974) UniProtKB PMID:28959974 NCBI chr18:14,127,724...14,133,486 JBrowse link
G ERCC6 ERCC excision repair 6, chromatin remodeling factor IEA Ensembl GO_REF:0000107 NCBI chr14:89,998,125...90,075,911
Ensembl chr14:90,002,024...90,075,898
JBrowse link
G HMGA2 high mobility group AT-hook 2 ISO (PMID:19549901) UniProtKB PMID:19549901 NCBI chr 5:30,188,521...30,329,635 JBrowse link
G HSF1 heat shock transcription factor 1 IEA Ensembl GO_REF:0000107 NCBI chr 4:463,531...486,483
Ensembl chr 4:461,559...486,473
JBrowse link
G NUDT16L1 nudix hydrolase 16 like 1 IEA Ensembl GO_REF:0000107 NCBI chr 3:37,684,206...37,694,653
Ensembl chr 3:37,684,207...37,748,039
JBrowse link
negative regulation of double-strand break repair via single-strand annealing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OGG1 8-oxoguanine DNA glycosylase ISO (PMID:19506022) MGI PMID:19506022 NCBI chr13:66,038,669...66,045,478 JBrowse link
non-recombinational repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G REXO4 REX4 homolog, 3'-5' exonuclease IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:273,011,736...273,021,956
Ensembl chr 1:273,011,733...273,021,940
JBrowse link
nucleotide-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRCA2 BRCA2 DNA repair associated ISO (PMID:16845393) UniProtKB PMID:16845393 NCBI chr11:8,805,950...8,858,128 JBrowse link
G CETN1 centrin 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:105,740,188...105,742,226
Ensembl chr 6:105,740,550...105,741,465
JBrowse link
G CETN2 centrin 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:123,902,240...123,906,046 JBrowse link
G COMMD1 copper metabolism domain containing 1 IEA Ensembl GO_REF:0000107 NCBI chr 3:79,770,315...79,913,969
Ensembl chr 3:79,770,565...79,913,975
JBrowse link
G DCLRE1A DNA cross-link repair 1A ISO (MGI:MGI:1859725|PMID:10848582) MGI PMID:10848582 MGI:MGI:1859725 NCBI chr14:124,144,272...124,162,379
Ensembl chr14:124,144,270...124,162,241
JBrowse link
G DDB1 damage specific DNA binding protein 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:10,171,554...10,201,602
Ensembl chr 2:10,171,499...10,201,602
JBrowse link
G ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit ISO (PMID:3290851)
(MGI:MGI:63544|PMID:8275084)
(PMID:11707424)
MGI PMID:3290851, PMID:8275084, PMID:11707424 MGI:MGI:63544 NCBI chr 6:51,783,537...51,808,898 JBrowse link
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit IEA InterPro GO_REF:0000002 NCBI chr 6:51,734,318...51,757,508
Ensembl chr 6:51,734,319...51,779,624
JBrowse link
G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit IEA InterPro GO_REF:0000002 NCBI chr15:25,189,644...25,224,381
Ensembl chr15:25,189,663...25,228,066
JBrowse link
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit ISO (PMID:10644440)
(PMID:8797827)
MGI
UniProtKB
PMID:8797827, PMID:10644440 NCBI chr 3:29,266,234...29,306,109
Ensembl chr 3:29,266,236...29,306,116
JBrowse link
G ERCC5 ERCC excision repair 5, endonuclease IEA InterPro GO_REF:0000002 NCBI chr11:71,141,823...71,168,326
Ensembl chr11:71,141,798...71,168,321
JBrowse link
G ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit ISO (PMID:17297471) UniProtKB PMID:17297471 NCBI chr16:39,704,602...39,770,330
Ensembl chr16:39,701,701...39,770,315
JBrowse link
G FAN1 FANCD2 and FANCI associated nuclease 1 ISO (PMID:20603016) UniProtKB PMID:20603016 NCBI chr 1:143,919,695...143,961,678
Ensembl chr 1:143,913,550...143,961,664
JBrowse link
G FANCC FA complementation group C ISO (MGI:MGI:1355066|PMID:8704201) MGI PMID:8704201 MGI:MGI:1355066 NCBI chr10:26,796,546...27,055,271 JBrowse link
G GTF2H1 general transcription factor IIH subunit 1 IEA InterPro GO_REF:0000002 NCBI chr 2:40,857,720...40,900,591
Ensembl chr 2:40,857,723...40,901,123
JBrowse link
G GTF2H2 general transcription factor IIH subunit 2 IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr16:47,658,015...47,700,926 JBrowse link
G GTF2H3 general transcription factor IIH subunit 3 IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr14:29,335,715...29,355,465
Ensembl chr14:29,335,580...29,355,436
JBrowse link
G GTF2H5 general transcription factor IIH subunit 5 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 1:8,928,280...8,935,030
Ensembl chr 1:8,917,240...8,934,919
JBrowse link
G HUS1 HUS1 checkpoint clamp component IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:48,522,914...48,539,267
Ensembl chr18:48,522,997...48,538,788
JBrowse link
G MNAT1 MNAT1 component of CDK activating kinase IEA InterPro GO_REF:0000002 NCBI chr 1:189,690,343...189,908,144
Ensembl chr 1:189,690,354...189,910,589
JBrowse link
G NEIL1 nei like DNA glycosylase 1 IEA InterPro GO_REF:0000002 NCBI chr 7:58,261,761...58,269,001
Ensembl chr 7:58,261,761...58,283,092
JBrowse link
G NEIL2 nei like DNA glycosylase 2 IEA InterPro GO_REF:0000002 NCBI chr14:14,945,129...14,966,305
Ensembl chr14:14,945,168...15,002,368
JBrowse link
G NEIL3 nei like DNA glycosylase 3 IEA InterPro GO_REF:0000002 NCBI chr15:39,416,073...39,632,313
Ensembl chr15:39,581,856...39,632,310
JBrowse link
G OGG1 8-oxoguanine DNA glycosylase IEA InterPro GO_REF:0000002 NCBI chr13:66,038,669...66,045,478 JBrowse link
G POLA1 DNA polymerase alpha 1, catalytic subunit NOT ISO (PMID:1508673) UniProtKB PMID:1508673 NCBI chr  X:20,756,674...21,064,265
Ensembl chr  X:20,756,201...21,102,061
JBrowse link
G POLL DNA polymerase lambda IEA Ensembl GO_REF:0000107 NCBI chr14:112,608,558...112,617,348
Ensembl chr14:112,606,193...112,617,319
JBrowse link
G RAD23A RAD23 homolog A, nucleotide excision repair protein IEA UniProt GO_REF:0000104 NCBI chr 2:66,090,089...66,096,477
Ensembl chr 2:66,084,856...66,096,484
JBrowse link
G RAD23B RAD23 homolog B, nucleotide excision repair protein ISO (PMID:8168482), (PMID:9734359) UniProtKB PMID:8168482, PMID:9734359 NCBI chr 1:248,447,991...248,493,651
Ensembl chr 1:248,448,265...248,492,860
JBrowse link
G RAD51D RAD51 paralog D NOT ISO (MGI:MGI:4430476|PMID:19327148) MGI PMID:19327148 MGI:MGI:4430476 NCBI chr12:40,054,175...40,072,831 JBrowse link
G RPA1 replication protein A1 IEA Ensembl GO_REF:0000107 NCBI chr12:48,009,652...48,048,744
Ensembl chr12:48,009,724...48,048,734
JBrowse link
G RPA2 replication protein A2 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 6:85,032,604...85,045,899
Ensembl chr 6:85,031,578...85,045,916
JBrowse link
G RPA3 replication protein A3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:77,910,876...77,914,872
Ensembl chr 9:77,910,881...77,937,060
JBrowse link
G SLX4 SLX4 structure-specific endonuclease subunit IEA Ensembl GO_REF:0000107 NCBI chr 3:38,646,904...38,670,173
Ensembl chr 3:38,646,938...38,670,166
JBrowse link
G TP53 tumor protein p53 ISS
IEA
UniProt
Ensembl
GO_REF:0000024, GO_REF:0000107 NCBI chr12:52,939,643...52,953,786
Ensembl chr12:52,939,643...52,953,819
JBrowse link
G XPA XPA, DNA damage recognition and repair factor ISO (MGI:MGI:2179786|PMID:11950998), (MGI:MGI:2448221|PMID:12509265) MGI PMID:11950998, PMID:12509265 MGI:MGI:2179786, MGI:MGI:2448221 NCBI chr 1:239,532,331...239,568,589
Ensembl chr 1:239,532,246...239,568,649
JBrowse link
G XPC XPC complex subunit, DNA damage recognition and repair factor IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr13:70,348,841...70,397,194
Ensembl chr13:70,348,864...70,397,782
JBrowse link
nucleotide-excision repair involved in interstrand cross-link repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:29,266,234...29,306,109
Ensembl chr 3:29,266,236...29,306,116
JBrowse link
G XPA XPA, DNA damage recognition and repair factor IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:239,532,331...239,568,589
Ensembl chr 1:239,532,246...239,568,649
JBrowse link
nucleotide-excision repair, DNA damage recognition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RAD23B RAD23 homolog B, nucleotide excision repair protein IEA Ensembl GO_REF:0000107 NCBI chr 1:248,447,991...248,493,651
Ensembl chr 1:248,448,265...248,492,860
JBrowse link
G XPA XPA, DNA damage recognition and repair factor IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:239,532,331...239,568,589
Ensembl chr 1:239,532,246...239,568,649
JBrowse link
G XPC XPC complex subunit, DNA damage recognition and repair factor IEA Ensembl GO_REF:0000107 NCBI chr13:70,348,841...70,397,194
Ensembl chr13:70,348,864...70,397,782
JBrowse link
nucleotide-excision repair, DNA duplex unwinding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:51,734,318...51,757,508
Ensembl chr 6:51,734,319...51,779,624
JBrowse link
G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit IEA Ensembl GO_REF:0000107 NCBI chr15:25,189,644...25,224,381
Ensembl chr15:25,189,663...25,228,066
JBrowse link
nucleotide-excision repair, DNA gap filling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LIG4 DNA ligase 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:75,537,027...75,547,711
Ensembl chr11:75,537,032...75,547,691
JBrowse link
G POLB DNA polymerase beta NOT ISO (PMID:20227374) UniProtKB PMID:20227374 NCBI chr17:11,356,130...11,388,122
Ensembl chr17:11,356,129...11,388,821
JBrowse link
G POLD1 DNA polymerase delta 1, catalytic subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:55,247,799...55,272,087
Ensembl chr 6:55,247,861...55,272,166
JBrowse link
G POLD3 DNA polymerase delta 3, accessory subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:8,906,491...8,956,845
Ensembl chr 9:8,906,459...8,958,323
JBrowse link
G POLE DNA polymerase epsilon, catalytic subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:22,798,146...22,852,818
Ensembl chr14:22,798,192...22,853,547
JBrowse link
G POLK DNA polymerase kappa IEA Ensembl GO_REF:0000107 NCBI chr 2:84,555,648...84,619,490
Ensembl chr 2:84,538,050...84,656,234
JBrowse link
nucleotide-excision repair, DNA incision term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:51,734,318...51,757,508
Ensembl chr 6:51,734,319...51,779,624
JBrowse link
G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr15:25,189,644...25,224,381
Ensembl chr15:25,189,663...25,228,066
JBrowse link
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit ISO (PMID:10413517) UniProtKB PMID:10413517 NCBI chr 3:29,266,234...29,306,109
Ensembl chr 3:29,266,236...29,306,116
JBrowse link
G FAN1 FANCD2 and FANCI associated nuclease 1 IEA Ensembl GO_REF:0000107 NCBI chr 1:143,919,695...143,961,678
Ensembl chr 1:143,913,550...143,961,664
JBrowse link
G OGG1 8-oxoguanine DNA glycosylase ISO (PMID:19506022) MGI PMID:19506022 NCBI chr13:66,038,669...66,045,478 JBrowse link
G XPA XPA, DNA damage recognition and repair factor IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:239,532,331...239,568,589
Ensembl chr 1:239,532,246...239,568,649
JBrowse link
nucleotide-excision repair, DNA incision, 3'-to lesion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit ISO (PMID:7657672) UniProtKB PMID:7657672 NCBI chr 6:51,783,537...51,808,898 JBrowse link
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit IEA Ensembl GO_REF:0000107 NCBI chr 3:29,266,234...29,306,109
Ensembl chr 3:29,266,236...29,306,116
JBrowse link
G ERCC5 ERCC excision repair 5, endonuclease IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:71,141,823...71,168,326
Ensembl chr11:71,141,798...71,168,321
JBrowse link
nucleotide-excision repair, DNA incision, 5'-to lesion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ERCC1 ERCC excision repair 1, endonuclease non-catalytic subunit ISO (PMID:7657672) UniProtKB PMID:7657672 NCBI chr 6:51,783,537...51,808,898 JBrowse link
G ERCC4 ERCC excision repair 4, endonuclease catalytic subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:29,266,234...29,306,109
Ensembl chr 3:29,266,236...29,306,116
JBrowse link
G NTHL1 nth like DNA glycosylase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:39,935,619...39,941,718
Ensembl chr 3:39,934,912...39,941,712
JBrowse link
nucleotide-excision repair, preincision complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GTF2H5 general transcription factor IIH subunit 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:8,928,280...8,935,030
Ensembl chr 1:8,917,240...8,934,919
JBrowse link
photoreactive repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CRY2 cryptochrome circadian regulator 2 NOT ISO (PMID:12627958) UniProtKB PMID:12627958 NCBI chr 2:16,587,101...16,620,380
Ensembl chr 2:16,585,966...16,620,405
JBrowse link
positive regulation of base-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FAM168A family with sequence similarity 168 member A IEA Ensembl GO_REF:0000107 NCBI chr 9:7,852,347...8,072,011
Ensembl chr 9:7,852,352...8,071,733
JBrowse link
G RELT RELT TNF receptor IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:7,833,387...7,852,469
Ensembl chr 9:7,833,406...7,854,496
JBrowse link
G RPS3 ribosomal protein S3 IEA Ensembl GO_REF:0000107 NCBI chr 9:9,612,939...9,630,404
Ensembl chr 9:9,616,456...9,630,413
JBrowse link
positive regulation of DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABRAXAS1 abraxas 1, BRCA1 A complex subunit IEA Ensembl GO_REF:0000107 NCBI chr 8:135,002,297...135,021,205
Ensembl chr 8:135,002,320...135,021,197
JBrowse link
G APBB1 amyloid beta precursor protein binding family B member 1 ISO (MGI:MGI:3698695|PMID:17121854)
PMID:19282473
UniProtKB
UniProt
PMID:17121854, PMID:19282473 MGI:MGI:3698695, RGD:8553580 NCBI chr 9:3,303,032...3,323,828
Ensembl chr 9:3,303,019...3,323,828
JBrowse link
G BABAM1 BRISC and BRCA1 A complex member 1 IEA InterPro
Ensembl
GO_REF:0000002, GO_REF:0000107 NCBI chr 2:60,398,170...60,407,742
Ensembl chr 2:60,398,191...60,407,557
JBrowse link
G BABAM2 BRISC and BRCA1 A complex member 2 IEA Ensembl GO_REF:0000107 NCBI chr 3:110,897,250...111,328,414
Ensembl chr 3:110,897,351...111,328,405
JBrowse link
G BRCA1 BRCA1 DNA repair associated IEA Ensembl GO_REF:0000107 NCBI chr12:19,788,087...19,854,515
Ensembl chr12:19,786,020...19,855,570
JBrowse link
G BRCC3 BRCA1/BRCA2-containing complex subunit 3 IEA Ensembl GO_REF:0000107 NCBI chr  X:125,383,392...125,439,082
Ensembl chr  X:125,383,414...125,439,082
JBrowse link
G CBX8 chromobox 8 ISO RGD PMID:23572236 RGD:9586727 NCBI chr12:2,562,419...2,565,035
Ensembl chr12:2,562,393...2,566,145
JBrowse link
G CEBPG CCAAT enhancer binding protein gamma IEA Ensembl GO_REF:0000107 NCBI chr 6:43,164,902...43,175,002
Ensembl chr 6:43,164,918...43,175,002
JBrowse link
G CMTR1 cap methyltransferase 1 IEA UniProt GO_REF:0000104 NCBI chr 7:33,000,499...33,063,739
Ensembl chr 7:32,931,786...33,063,739
JBrowse link
G DHX9 DExH-box helicase 9 IEA Ensembl GO_REF:0000107 NCBI chr 9:124,141,929...124,183,838
Ensembl chr 9:124,093,667...124,185,352
JBrowse link
G EGFR epidermal growth factor receptor IEA Ensembl GO_REF:0000107 NCBI chr 9:139,302,410...139,474,632
Ensembl chr 9:139,300,022...139,478,882
JBrowse link
G ERCC6 ERCC excision repair 6, chromatin remodeling factor ISO (PMID:22483866) UniProt PMID:22483866 NCBI chr14:89,998,125...90,075,911
Ensembl chr14:90,002,024...90,075,898
JBrowse link
G ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:39,704,602...39,770,330
Ensembl chr16:39,701,701...39,770,315
JBrowse link
G EYA1 EYA transcriptional coactivator and phosphatase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:63,970,939...64,328,107
Ensembl chr 4:63,970,511...64,328,105
JBrowse link
G EYA2 EYA transcriptional coactivator and phosphatase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:48,930,682...49,243,789
Ensembl chr17:48,966,814...49,243,747
JBrowse link
G EYA3 EYA transcriptional coactivator and phosphatase 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:85,095,409...85,185,856
Ensembl chr 6:85,095,409...85,185,799
JBrowse link
G EYA4 EYA transcriptional coactivator and phosphatase 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:30,260,784...30,575,593
Ensembl chr 1:30,261,909...30,575,559
JBrowse link
G FGF10 fibroblast growth factor 10 IEA Ensembl GO_REF:0000107 NCBI chr16:28,695,465...28,779,953
Ensembl chr16:28,695,469...28,777,541
JBrowse link
G MGMT O-6-methylguanine-DNA methyltransferase