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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of DNA repair
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Accession:GO:0006282 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of DNA repair.


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regulation of DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDK9 cyclin dependent kinase 9 ISO (PMID:20493174) UniProtKB PMID:20493174 NCBI chr 9:98,905,468...98,909,923
Ensembl chr 9:127,580,862...127,584,935
JBrowse link
G IER3 immediate early response 3 ISO (MGI:MGI:5432078|PMID:20467439) MGI PMID:20467439 MGI:MGI:5432078 NCBI chr 6:30,488,162...30,489,784 JBrowse link
G SIRT7 sirtuin 7 ISO (PMID:27436229), (PMID:30944854) UniProt PMID:27436229, PMID:30944854 NCBI chr17:76,317,560...76,323,761
Ensembl chr17:82,020,077...82,026,289
JBrowse link
G SUV39H1 suppressor of variegation 3-9 homolog 1 ISO (MGI:MGI:5913114|PMID:23695662) MGI PMID:23695662 MGI:MGI:5913114 NCBI chr  X:40,993,911...41,007,362
Ensembl chr  X:48,855,494...48,868,131
JBrowse link
G USP1 ubiquitin specific peptidase 1 ISO (PMID:18082604) UniProtKB PMID:18082604 NCBI chr 1:61,694,775...61,710,216
Ensembl chr 1:63,510,196...63,525,446
JBrowse link
negative regulation of DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RPS3 ribosomal protein S3 ISO (PMID:17049931) UniProtKB PMID:17049931 NCBI chr11:70,460,702...70,466,909
Ensembl chr11:73,762,794...73,768,982
JBrowse link
negative regulation of double-strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OTUB1 OTU deubiquitinase, ubiquitin aldehyde binding 1 ISO (PMID:20725033) UniProtKB PMID:20725033 NCBI chr11:59,342,820...59,355,386
Ensembl chr11:62,690,542...62,706,542
JBrowse link
G RNF169 ring finger protein 169 ISO (PMID:22742833)
(PMID:22492721), (PMID:22733822)
UniProtKB PMID:22492721, PMID:22733822, PMID:22742833 NCBI chr11:69,821,842...69,909,297
Ensembl chr11:73,126,127...73,207,340
JBrowse link
G TRIP12 thyroid hormone receptor interactor 12 ISO (PMID:22884692) UniProtKB PMID:22884692 NCBI chr2B:117,013,343...117,175,296
Ensembl chr2B:235,820,182...235,979,780
JBrowse link
G TWIST1 twist family bHLH transcription factor 1 ISO (PMID:17690110) BHF-UCL PMID:17690110 NCBI chr 7:19,761,041...19,765,665 JBrowse link
G UBR5 ubiquitin protein ligase E3 component n-recognin 5 ISO (PMID:22884692) UniProtKB PMID:22884692 NCBI chr 8:98,904,557...99,064,121
Ensembl chr 8:101,067,435...101,224,913
JBrowse link
negative regulation of double-strand break repair via homologous recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CGAS cyclic GMP-AMP synthase ISO (MGI:MGI:6241455|PMID:30356214)
(PMID:30356214)
UniProt PMID:30356214 MGI:MGI:6241455 NCBI chr 6:71,252,050...71,279,121
Ensembl chr 6:74,544,251...74,566,965
JBrowse link
G FANCB FA complementation group B ISO (MGI:MGI:5648586|PMID:25520194) MGI PMID:25520194 MGI:MGI:5648586 NCBI chr  X:7,470,574...7,500,958
Ensembl chr  X:14,752,934...14,781,817
JBrowse link
G FBH1 F-box DNA helicase 1 ISO (MGI:MGI:5566975|PMID:24108124)
(PMID:19736316)
UniProtKB PMID:19736316, PMID:24108124 MGI:MGI:5566975 NCBI chr10:5,931,389...5,978,844
Ensembl chr10:5,915,713...5,962,778
JBrowse link
G HELB DNA helicase B ISO (PMID:26774285)
(MGI:MGI:5766842|PMID:26774285)
UniProtKB PMID:26774285 MGI:MGI:5766842 NCBI chr12:22,571,448...22,607,417
Ensembl chr12:23,078,732...23,114,134
JBrowse link
G KLHL15 kelch like family member 15 ISO (PMID:27561354) UniProtKB PMID:27561354 NCBI chr  X:16,583,117...16,625,029
Ensembl chr  X:23,956,827...23,997,742
JBrowse link
G MAD2L2 mitotic arrest deficient 2 like 2 ISO (PMID:29656893) UniProtKB PMID:29656893 NCBI chr 1:10,436,532...10,454,023
Ensembl chr 1:11,654,963...11,661,526
JBrowse link
G MAGEF1 MAGE family member F1 ISO (PMID:29225034) UniProtKB PMID:29225034 NCBI chr 3:181,750,186...181,751,900
Ensembl chr 3:190,229,865...190,230,791
JBrowse link
G PARPBP PARP1 binding protein ISO (PMID:22153967) UniProtKB PMID:22153967 NCBI chr12:99,707,641...99,784,993
Ensembl chr12:103,105,117...103,182,366
JBrowse link
G POLQ DNA polymerase theta ISO (MGI:MGI:5621198|PMID:25642960)
(PMID:25642963)
UniProtKB PMID:25642960, PMID:25642963 MGI:MGI:5621198 NCBI chr 3:118,535,968...118,648,275
Ensembl chr 3:125,446,829...125,559,283
JBrowse link
G RADX RPA1 related single stranded DNA binding protein, X-linked ISO (PMID:28735897) UniProtKB PMID:28735897 NCBI chr  X:95,714,600...95,781,853
Ensembl chr  X:106,092,340...106,159,772
JBrowse link
G RECQL5 RecQ like helicase 5 ISO (MGI:MGI:5648586|PMID:25520194) MGI PMID:25520194 MGI:MGI:5648586 NCBI chr17:69,577,778...69,618,068
Ensembl chr17:75,128,325...75,168,254
JBrowse link
G RIF1 replication timing regulatory factor 1 ISO (PMID:23333306)
(MGI:MGI:5468037|PMID:23306437), (MGI:MGI:5476381|PMID:23333305)
UniProtKB PMID:23306437, PMID:23333305, PMID:23333306 MGI:MGI:5468037, MGI:MGI:5476381 NCBI chr2B:38,721,658...38,818,488
Ensembl chr2B:155,985,960...156,052,926
JBrowse link
G SHLD1 shieldin complex subunit 1 ISO (PMID:29656893) UniProtKB PMID:29656893 NCBI chr20:5,753,262...5,858,728
Ensembl chr20:5,537,488...5,642,107
JBrowse link
G SHLD2 shieldin complex subunit 2 ISO (PMID:29656893) UniProtKB PMID:29656893 NCBI chr10:83,639,020...83,643,420 JBrowse link
G SHLD3 shieldin complex subunit 3 ISO (PMID:29656893) UniProtKB PMID:29656893 NCBI chr 5:48,376,338...48,382,052 JBrowse link
G SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 ISO (PMID:25294876) UniProtKB PMID:25294876 NCBI chr18:11,479,742...11,627,035
Ensembl chr18:13,785,912...13,933,887
JBrowse link
G TP53BP1 tumor protein p53 binding protein 1 ISO (PMID:23333306), (PMID:23345425)
(MGI:MGI:5887194|PMID:20362325)
(MGI:MGI:5476381|PMID:23333305)
UniProtKB PMID:20362325, PMID:23333305, PMID:23333306, PMID:23345425 MGI:MGI:5476381, MGI:MGI:5887194 NCBI chr15:22,364,696...22,472,499
Ensembl chr15:40,519,012...40,626,741
JBrowse link
G UBQLN4 ubiquilin 4 ISO (PMID:30612738) UniProt PMID:30612738 NCBI chr 1:131,374,635...131,395,986
Ensembl chr 1:135,209,490...135,225,666
JBrowse link
negative regulation of double-strand break repair via nonhomologous end joining term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AUNIP aurora kinase A and ninein interacting protein ISO (PMID:29042561) UniProtKB PMID:29042561 NCBI chr 1:25,090,690...25,118,062
Ensembl chr 1:26,157,953...26,185,578
JBrowse link
G CYREN cell cycle regulator of NHEJ ISO (PMID:28959974) UniProtKB PMID:28959974 NCBI chr 7:127,130,587...127,148,824 JBrowse link
G ERCC6 ERCC excision repair 6, chromatin remodeling factor ISO (PMID:25820262) UniProt PMID:25820262 NCBI chr10:44,703,720...44,784,948 JBrowse link
G HMGA2 high mobility group AT-hook 2 ISO (PMID:19549901) UniProtKB PMID:19549901 NCBI chr12:22,954,946...23,096,623 JBrowse link
G HSF1 heat shock transcription factor 1 ISO (PMID:26359349) UniProtKB PMID:26359349 NCBI chr 8:141,055,310...141,078,360
Ensembl chr 8:144,062,137...144,067,866
JBrowse link
G NUDT16L1 nudix hydrolase 16 like 1 ISO (PMID:28241136) UniProtKB PMID:28241136 NCBI chr16:3,615,841...3,620,526 JBrowse link
negative regulation of double-strand break repair via single-strand annealing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OGG1 8-oxoguanine DNA glycosylase ISO (PMID:19506022) MGI PMID:19506022 NCBI chr 3:9,702,311...9,742,283 JBrowse link
positive regulation of base-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FAM168A family with sequence similarity 168 member A ISO (PMID:25260657) UniProtKB PMID:25260657 NCBI chr11:68,477,579...68,674,428
Ensembl chr11:71,698,901...71,766,921
JBrowse link
G RPS3 ribosomal protein S3 ISO (PMID:18973764) UniProtKB PMID:18973764 NCBI chr11:70,460,702...70,466,909
Ensembl chr11:73,762,794...73,768,982
JBrowse link
positive regulation of DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABRAXAS1 abraxas 1, BRCA1 A complex subunit ISO (PMID:17525340), (PMID:17643121), (PMID:19261748) UniProtKB PMID:17525340, PMID:17643121, PMID:19261748 NCBI chr 4:40,711,139...40,736,763
Ensembl chr 4:46,556,892...46,581,573
JBrowse link
G APBB1 amyloid beta precursor protein binding family B member 1 ISO (MGI:MGI:3698695|PMID:17121854)
PMID:19282473
UniProtKB
UniProt
PMID:17121854, PMID:19282473 MGI:MGI:3698695, RGD:8553580 NCBI chr11:6,526,477...6,550,509
Ensembl chr11:6,209,812...6,225,972
JBrowse link
G BABAM1 BRISC and BRCA1 A complex member 1 ISO (PMID:19261746), (PMID:19261748), (PMID:19261749) UniProtKB PMID:19261746, PMID:19261748, PMID:19261749 NCBI chr19:16,755,518...16,767,634
Ensembl chr19:17,729,568...17,742,447
JBrowse link
G BABAM2 BRISC and BRCA1 A complex member 2 ISO (PMID:19261748) UniProtKB PMID:19261748 NCBI chr2A:27,884,907...28,338,302
Ensembl chr2A:27,974,917...28,420,519
JBrowse link
G BRCA1 BRCA1 DNA repair associated ISO (PMID:17525340), (PMID:17643121), (PMID:19261748) UniProtKB PMID:17525340, PMID:17643121, PMID:19261748 NCBI chr17:14,197,946...14,279,064
Ensembl chr17:14,428,526...14,506,815
JBrowse link
G BRCC3 BRCA1/BRCA2-containing complex subunit 3 ISO (PMID:17525341), (PMID:19261746), (PMID:19261748) UniProtKB PMID:17525341, PMID:19261746, PMID:19261748 NCBI chr  X:144,550,320...144,592,795 JBrowse link
G CBX8 chromobox 8 ISO RGD PMID:23572236 RGD:9586727 NCBI chr17:73,874,618...73,877,347
Ensembl chr17:79,410,967...79,413,691
JBrowse link
G CEBPG CCAAT enhancer binding protein gamma ISO (PMID:16255782) UniProtKB PMID:16255782 NCBI chr19:30,295,603...30,304,984
Ensembl chr19:39,046,219...39,046,671
JBrowse link
G DHX9 DExH-box helicase 9 ISO (PMID:24049074) UniProtKB PMID:24049074 NCBI chr 1:158,355,472...158,404,178
Ensembl chr 1:162,006,822...162,055,833
JBrowse link
G EGFR epidermal growth factor receptor ISO (PMID:17115032) UniProtKB PMID:17115032 NCBI chr 7:55,614,042...55,807,285
Ensembl chr 7:56,046,296...56,111,615
JBrowse link
G ERCC6 ERCC excision repair 6, chromatin remodeling factor ISO (PMID:22483866) UniProt PMID:22483866 NCBI chr10:44,703,720...44,784,948 JBrowse link
G ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit ISO (PMID:7664335) UniProtKB PMID:7664335 NCBI chr 5:53,053,712...53,131,563
Ensembl chr 5:54,693,987...54,765,496
JBrowse link
G EYA1 EYA transcriptional coactivator and phosphatase 1 ISO (PMID:19234442) UniProtKB PMID:19234442 NCBI chr 8:67,728,057...68,060,069
Ensembl chr 8:69,387,769...69,551,829
JBrowse link
G EYA3 EYA transcriptional coactivator and phosphatase 3 ISO (PMID:19234442) UniProtKB PMID:19234442 NCBI chr 1:27,230,623...27,349,355
Ensembl chr 1:28,270,116...28,386,878
JBrowse link
G FGF10 fibroblast growth factor 10 ISO (PMID:14975937) UniProtKB PMID:14975937 NCBI chr 5:65,979,443...66,069,314
Ensembl chr 5:71,028,187...71,111,706
JBrowse link
G MGMT O-6-methylguanine-DNA methyltransferase ISO RGD PMID:1945835 RGD:729332 NCBI chr10:126,059,701...126,365,850
Ensembl chr10:130,305,485...130,609,422
JBrowse link
G NPAS2 neuronal PAS domain protein 2 ISO (PMID:18819933) UniProtKB PMID:18819933 Ensembl chr2A:101,868,933...101,972,866 JBrowse link
G PARG poly(ADP-ribose) glycohydrolase ISO RGD PMID:15158362 RGD:2316739 NCBI chr10:44,290,391...44,420,184 JBrowse link
G PCNA proliferating cell nuclear antigen ISO (PMID:24939902) UniProtKB PMID:24939902 NCBI chr20:5,134,930...5,146,603
Ensembl chr20:4,927,731...4,939,440
JBrowse link
G RNF168 ring finger protein 168 ISO (PMID:19203578), (PMID:19203579)
(PMID:23760478)
UniProtKB PMID:19203578, PMID:19203579, PMID:23760478 NCBI chr 3:193,814,785...193,848,620
Ensembl chr 3:203,756,589...203,790,687
JBrowse link
G RNF8 ring finger protein 8 ISO (PMID:18001824), (PMID:18001825) UniProtKB PMID:18001824, PMID:18001825 NCBI chr 6:36,918,705...36,955,380
Ensembl chr 6:38,108,414...38,145,949
JBrowse link
G RPS3 ribosomal protein S3 ISO (PMID:23911537) UniProtKB PMID:23911537 NCBI chr11:70,460,702...70,466,909
Ensembl chr11:73,762,794...73,768,982
JBrowse link
G SIRT1 sirtuin 1 ISO (PMID:19934257) UniProtKB PMID:19934257 NCBI chr10:64,368,878...64,401,684
Ensembl chr10:66,681,598...66,715,069
JBrowse link
G SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 ISO (PMID:24790221) UniProtKB PMID:24790221 NCBI chr18:11,479,742...11,627,035
Ensembl chr18:13,785,912...13,933,887
JBrowse link
G TIGAR TP53 induced glycolysis regulatory phosphatase ISO (PMID:25928429) UniProtKB PMID:25928429 NCBI chr12:4,429,945...4,462,142
Ensembl chr12:4,353,272...4,385,380
JBrowse link
G TMEM161A transmembrane protein 161A ISO (PMID:16551573) BHF-UCL PMID:16551573 NCBI chr19:18,557,799...18,576,722
Ensembl chr19:19,560,046...19,578,779
JBrowse link
G TRIM28 tripartite motif containing 28 ISO (PMID:17178852) UniProtKB PMID:17178852 NCBI chr19:55,557,130...55,563,802
Ensembl chr19:64,371,477...64,377,144
JBrowse link
G UBE2N ubiquitin conjugating enzyme E2 N ISO (PMID:16129784) HGNC PMID:16129784 NCBI chr12:90,951,446...90,984,075 JBrowse link
G UBE2V2 ubiquitin conjugating enzyme E2 V2 ISO RGD PMID:12750002 RGD:1299567 NCBI chr 8:44,435,496...44,488,517
Ensembl chr 8:41,856,429...41,878,320
JBrowse link
G UIMC1 ubiquitin interaction motif containing 1 ISO (PMID:17525340), (PMID:17525341), (PMID:17525342), (PMID:17643121), (PMID:19261748) UniProtKB PMID:17525340, PMID:17525341, PMID:17525342, PMID:17643121, PMID:19261748 NCBI chr 5:172,205,958...172,321,758
Ensembl chr 5:179,271,577...179,374,229
JBrowse link
G WRAP53 WD repeat containing antisense to TP53 ISO (PMID:25512560) UniProtKB PMID:25512560 NCBI chr17:7,715,897...7,735,873
Ensembl chr17:7,707,221...7,723,394
JBrowse link
positive regulation of DNA repair by transcription from RNA polymerase II promoter term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GTF2I general transcription factor IIi ISO (PMID:9334314) ARUK-UCL PMID:9334314 Ensembl chr 7:81,831,442...81,901,926 JBrowse link
G PRRX1 paired related homeobox 1 ISO (PMID:9334314) ARUK-UCL PMID:9334314 NCBI chr 1:146,151,633...146,227,926
Ensembl chr 1:149,867,634...149,943,810
JBrowse link
positive regulation of double-strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDX11 DEAD/H-box helicase 11 ISO (PMID:23797032) UniProtKB PMID:23797032 NCBI chr12:55,176,165...55,207,123 JBrowse link
G FMN2 formin 2 ISO (PMID:26287480) UniProt PMID:26287480 NCBI chr 1:215,626,889...216,023,590 JBrowse link
G FOXM1 forkhead box M1 ISO (MGI:MGI:3698692|PMID:17101782)
(PMID:17101782)
UniProtKB PMID:17101782 MGI:MGI:3698692 NCBI chr12:2,978,400...2,999,077
Ensembl chr12:2,910,028...2,930,503
JBrowse link
G MGMT O-6-methylguanine-DNA methyltransferase ISO (PMID:24147153) BHF-UCL PMID:24147153 NCBI chr10:126,059,701...126,365,850
Ensembl chr10:130,305,485...130,609,422
JBrowse link
G NUDT16 nudix hydrolase 16 ISO (PMID:20385596) UniProtKB PMID:20385596 NCBI chr 3:128,466,119...128,473,186
Ensembl chr 3:135,788,354...135,790,038
JBrowse link
G SLF1 SMC5-SMC6 complex localization factor 1 ISO (PMID:25931565) UniProtKB PMID:25931565 NCBI chr 5:20,660,101...20,757,072
Ensembl chr 5:20,817,614...20,884,453
JBrowse link
G SLF2 SMC5-SMC6 complex localization factor 2 ISO (PMID:25931565) UniProtKB PMID:25931565 NCBI chr10:97,511,398...97,566,386
Ensembl chr10:100,989,044...101,042,730
JBrowse link
G SPIDR scaffold protein involved in DNA repair ISO (PMID:23509288) UniProtKB PMID:23509288 NCBI chr 8:43,691,454...44,166,259
Ensembl chr 8:41,083,964...41,558,170
JBrowse link
G SPIRE1 spire type actin nucleation factor 1 ISO (PMID:26287480) UniProt PMID:26287480 NCBI chr18:1,663,614...1,881,357
Ensembl chr18:16,800,870...16,992,959
JBrowse link
G SPIRE2 spire type actin nucleation factor 2 ISO (PMID:26287480) UniProt PMID:26287480 NCBI chr16:70,580,030...70,634,143
Ensembl chr16:90,273,160...90,299,061
JBrowse link
G TIMELESS timeless circadian regulator ISO (PMID:23797032) UniProtKB PMID:23797032 NCBI chr12:32,465,529...32,497,581
Ensembl chr12:32,718,649...32,750,728
JBrowse link
G WRAP53 WD repeat containing antisense to TP53 ISO (PMID:27715493) UniProtKB PMID:27715493 NCBI chr17:7,715,897...7,735,873
Ensembl chr17:7,707,221...7,723,394
JBrowse link
G ZCWPW1 zinc finger CW-type and PWWP domain containing 1 ISO (MGI:MGI:6358520|PMID:31453335) ARUK-UCL PMID:31453335 MGI:MGI:6358520 NCBI chr 7:92,429,776...92,457,943
Ensembl chr 7:105,832,031...105,859,995
JBrowse link
positive regulation of double-strand break repair via homologous recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTR2 actin related protein 2 ISO (PMID:29925947) UniProt PMID:29925947 NCBI chr2A:65,289,675...65,333,219 JBrowse link
G ARID2 AT-rich interaction domain 2 ISO (PMID:28381560) CACAO PMID:28381560 NCBI chr12:42,823,236...43,004,465
Ensembl chr12:43,692,914...43,871,564
JBrowse link
G BLM BLM RecQ like helicase ISO (MGI:MGI:5648586|PMID:25520194) MGI PMID:25520194 MGI:MGI:5648586 NCBI chr15:69,407,248...69,508,070
Ensembl chr15:88,607,157...88,707,864
JBrowse link
G ERCC6 ERCC excision repair 6, chromatin remodeling factor ISO (PMID:25820262) UniProt PMID:25820262 NCBI chr10:44,703,720...44,784,948 JBrowse link
G FANCB FA complementation group B ISO (MGI:MGI:5648586|PMID:25520194) MGI PMID:25520194 MGI:MGI:5648586 NCBI chr  X:7,470,574...7,500,958
Ensembl chr  X:14,752,934...14,781,817
JBrowse link
G FUS FUS RNA binding protein ISO (PMID:10567410) UniProt PMID:10567410 NCBI chr16:23,775,389...23,786,881
Ensembl chr16:31,551,135...31,562,327
JBrowse link
G MMS19 MMS19 homolog, cytosolic iron-sulfur assembly component ISO (PMID:29225034) UniProtKB PMID:29225034 NCBI chr10:94,080,690...94,120,811
Ensembl chr10:97,574,257...97,614,146
JBrowse link
G MRNIP MRN complex interacting protein ISO (PMID:27568553) UniProtKB PMID:27568553 NCBI chr 5:174,989,967...175,020,550
Ensembl chr 5:182,299,016...182,340,632
JBrowse link
G PARP1 poly(ADP-ribose) polymerase 1 ISO (PMID:26344098), (PMID:30356214) UniProt PMID:26344098, PMID:30356214 NCBI chr 1:201,820,355...201,867,673
Ensembl chr 1:206,812,981...206,860,356
JBrowse link
G TIMELESS timeless circadian regulator ISO (PMID:26344098), (PMID:30356214) UniProt PMID:26344098, PMID:30356214 NCBI chr12:32,465,529...32,497,581
Ensembl chr12:32,718,649...32,750,728
JBrowse link
G WAS WASP actin nucleation promoting factor ISO (PMID:29925947) UniProt PMID:29925947 NCBI chr  X:40,982,132...40,989,767
Ensembl chr  X:48,842,765...48,850,380
JBrowse link
G WRAP53 WD repeat containing antisense to TP53 ISO (PMID:25512560) UniProtKB PMID:25512560 NCBI chr17:7,715,897...7,735,873
Ensembl chr17:7,707,221...7,723,394
JBrowse link
positive regulation of double-strand break repair via nonhomologous end joining term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DTX3L deltex E3 ubiquitin ligase 3L ISO (PMID:28525742) UniProtKB PMID:28525742 NCBI chr 3:119,654,019...119,664,918
Ensembl chr 3:126,558,924...126,569,807
JBrowse link
G FH fumarate hydratase ISO (PMID:26237645) UniProt PMID:26237645 NCBI chr 1:217,059,847...217,081,795
Ensembl chr 1:222,041,142...222,064,212
JBrowse link
G KDM4D lysine demethylase 4D ISO (PMID:24550317) MGI PMID:24550317 NCBI chr11:89,987,537...90,013,421 JBrowse link
G KMT5B lysine methyltransferase 5B ISO (PMID:28114273) UniProt PMID:28114273 NCBI chr11:63,239,796...63,297,113
Ensembl chr11:66,549,230...66,581,475
JBrowse link
G KMT5C lysine methyltransferase 5C ISO (PMID:28114273) UniProt PMID:28114273 NCBI chr19:52,381,963...52,390,507
Ensembl chr19:61,073,396...61,078,717
JBrowse link
G LOC100986203 histone-lysine N-methyltransferase SETMAR ISO (PMID:20620605), (PMID:21491884) UniProtKB PMID:20620605, PMID:21491884 NCBI chr 3:4,256,539...4,271,593
Ensembl chr 3:4,357,890...4,371,791
JBrowse link
G MAD2L2 mitotic arrest deficient 2 like 2 ISO (PMID:29656893) UniProtKB PMID:29656893 NCBI chr 1:10,436,532...10,454,023
Ensembl chr 1:11,654,963...11,661,526
JBrowse link
G PARP3 poly(ADP-ribose) polymerase family member 3 ISO (PMID:24598253) UniProt PMID:24598253 NCBI chr 3:51,883,695...51,890,266
Ensembl chr 3:53,112,494...53,119,053
JBrowse link
G PARP9 poly(ADP-ribose) polymerase family member 9 ISO (PMID:28525742) UniProtKB PMID:28525742 NCBI chr 3:119,617,722...119,655,039
Ensembl chr 3:126,522,859...126,559,647
JBrowse link
G PNKP polynucleotide kinase 3'-phosphatase ISO (PMID:12032095) CACAO PMID:12032095 NCBI chr19:46,874,216...46,880,954
Ensembl chr19:55,790,048...55,796,762
JBrowse link
G PRKDC protein kinase, DNA-activated, catalytic subunit ISO (PMID:26237645) UniProt PMID:26237645 NCBI chr 8:44,201,391...44,386,803
Ensembl chr 8:41,593,029...41,778,299
JBrowse link
G RIF1 replication timing regulatory factor 1 ISO (MGI:MGI:5468037|PMID:23306437), (MGI:MGI:5476381|PMID:23333305)
(PMID:28241136)
UniProtKB PMID:23306437, PMID:23333305, PMID:28241136 MGI:MGI:5468037, MGI:MGI:5476381 NCBI chr2B:38,721,658...38,818,488
Ensembl chr2B:155,985,960...156,052,926
JBrowse link
G SHLD1 shieldin complex subunit 1 ISO (PMID:29656893) UniProtKB PMID:29656893 NCBI chr20:5,753,262...5,858,728
Ensembl chr20:5,537,488...5,642,107
JBrowse link
G SHLD2 shieldin complex subunit 2 ISO (PMID:29656893), (PMID:29789392) UniProtKB PMID:29656893, PMID:29789392 NCBI chr10:83,639,020...83,643,420 JBrowse link
G SHLD3 shieldin complex subunit 3 ISO (PMID:29656893) UniProtKB PMID:29656893 NCBI chr 5:48,376,338...48,382,052 JBrowse link
G SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 ISO (PMID:25294876) UniProtKB PMID:25294876 NCBI chr18:11,479,742...11,627,035
Ensembl chr18:13,785,912...13,933,887
JBrowse link
G TOP2B DNA topoisomerase II beta ISO RGD PMID:22019940 RGD:13432143 NCBI chr 3:25,499,239...25,566,029
Ensembl chr 3:25,828,879...25,896,912
JBrowse link
G WRAP53 WD repeat containing antisense to TP53 ISO (PMID:25512560) UniProtKB PMID:25512560 NCBI chr17:7,715,897...7,735,873
Ensembl chr17:7,707,221...7,723,394
JBrowse link
positive regulation of mismatch repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HDAC10 histone deacetylase 10 ISO (PMID:26221039) UniProt PMID:26221039 NCBI chr22:30,473,753...30,481,369
Ensembl chr22:49,473,369...49,479,216
JBrowse link
G HMGB1 high mobility group box 1 ISO (PMID:15014079) UniProtKB PMID:15014079 NCBI chr13:11,737,942...11,894,923 JBrowse link
G PRKCG protein kinase C gamma ISO (PMID:15808853) HGNC PMID:15808853 NCBI chr19:50,823,372...50,849,003
Ensembl chr19:59,672,097...59,695,977
JBrowse link
positive regulation of single strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PARP1 poly(ADP-ribose) polymerase 1 ISO (PMID:28002403)
(MGI:MGI:5902647|PMID:28002403)
UniProtKB PMID:28002403 MGI:MGI:5902647 NCBI chr 1:201,820,355...201,867,673
Ensembl chr 1:206,812,981...206,860,356
JBrowse link
G XRCC1 X-ray repair cross complementing 1 ISO (PMID:28002403)
(MGI:MGI:5902647|PMID:28002403)
UniProtKB PMID:28002403 MGI:MGI:5902647 NCBI chr19:40,485,052...40,522,188
Ensembl chr19:49,094,014...49,125,520
JBrowse link
regulation of DNA double-strand break processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HELB DNA helicase B ISO (MGI:MGI:5766842|PMID:26774285)
(PMID:26774285)
UniProtKB PMID:26774285 MGI:MGI:5766842 NCBI chr12:22,571,448...22,607,417
Ensembl chr12:23,078,732...23,114,134
JBrowse link
regulation of double-strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DEK DEK proto-oncogene ISO (PMID:21653549) MGI PMID:21653549 NCBI chr 6:18,071,928...18,112,245
Ensembl chr 6:18,427,844...18,465,606
JBrowse link
G PML PML nuclear body scaffold ISO (PMID:21639834) UniProtKB PMID:21639834 NCBI chr15:52,903,874...52,955,151
Ensembl chr15:71,658,884...71,710,883
JBrowse link
regulation of double-strand break repair via homologous recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHEK1 checkpoint kinase 1 ISO (PMID:15665856) UniProtKB PMID:15665856 NCBI chr11:120,446,352...120,478,207 JBrowse link
G FIGNL1 fidgetin like 1 ISO (PMID:23754376) UniProtKB PMID:23754376 NCBI chr 7:51,080,052...51,093,694 JBrowse link
G KDM1A lysine demethylase 1A ISO (PMID:24217620) MGI PMID:24217620 NCBI chr 1:22,205,624...22,269,571
Ensembl chr 1:23,153,066...23,217,692
JBrowse link
G PPP4C protein phosphatase 4 catalytic subunit ISO (PMID:20154705) UniProtKB PMID:20154705 Ensembl chr16:30,450,467...30,464,446 JBrowse link
G PPP4R2 protein phosphatase 4 regulatory subunit 2 ISO (PMID:20154705) UniProtKB PMID:20154705 NCBI chr 3:72,939,529...73,012,073
Ensembl chr 3:74,835,788...74,935,446
JBrowse link
G RAD51 RAD51 recombinase ISO (PMID:23754376) UniProtKB PMID:23754376 NCBI chr15:19,638,310...19,672,474
Ensembl chr15:37,891,056...37,925,207
JBrowse link
G RAD51AP1 RAD51 associated protein 1 ISO (PMID:23754376) UniProtKB PMID:23754376 NCBI chr12:4,657,972...4,679,232
Ensembl chr12:4,578,621...4,599,879
JBrowse link
G RPA2 replication protein A2 ISO (PMID:20154705) UniProtKB PMID:20154705 NCBI chr 1:27,151,784...27,175,110
Ensembl chr 1:28,191,731...28,214,666
JBrowse link
G RTEL1 regulator of telomere elongation helicase 1 ISO (PMID:18957201) UniProtKB PMID:18957201
G SETD2 SET domain containing 2, histone lysine methyltransferase ISO (PMID:24843002) UniProtKB PMID:24843002 NCBI chr 3:46,916,615...47,064,046
Ensembl chr 3:48,018,517...48,163,999
JBrowse link
G SIRT6 sirtuin 6 ISO (PMID:19135889) UniProtKB PMID:19135889 NCBI chr19:3,196,092...3,204,602
Ensembl chr19:4,146,057...4,154,126
JBrowse link
G SPIDR scaffold protein involved in DNA repair ISO (PMID:23754376) UniProtKB PMID:23754376 NCBI chr 8:43,691,454...44,166,259
Ensembl chr 8:41,083,964...41,558,170
JBrowse link
G TERF2IP TERF2 interacting protein ISO (MGI:MGI:4440768|PMID:20339076) UniProtKB PMID:20339076 MGI:MGI:4440768 NCBI chr16:56,216,920...56,226,612
Ensembl chr16:75,565,184...75,573,882
JBrowse link
G TEX15 testis expressed 15, meiosis and synapsis associated ISO (MGI:MGI:3794139|PMID:18283110) MGI PMID:18283110 MGI:MGI:3794139 NCBI chr 8:30,145,628...30,232,903
Ensembl chr 8:27,334,129...27,420,049
JBrowse link
G USP51 ubiquitin specific peptidase 51 ISO (PMID:27083998) UniProtKB PMID:27083998 NCBI chr  X:47,747,547...47,753,119 JBrowse link
G ZNF365 zinc finger protein 365 ISO (PMID:23966166) UniProtKB PMID:23966166 NCBI chr10:58,894,939...58,923,176
Ensembl chr10:61,223,925...61,329,657
JBrowse link
regulation of double-strand break repair via nonhomologous end joining term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTR2 actin related protein 2 NOT ISO (PMID:29925947) UniProt PMID:29925947 NCBI chr2A:65,289,675...65,333,219 JBrowse link
G DEK DEK proto-oncogene ISO (MGI:MGI:5317387|PMID:21653549) MGI PMID:21653549 MGI:MGI:5317387 NCBI chr 6:18,071,928...18,112,245
Ensembl chr 6:18,427,844...18,465,606
JBrowse link
G MRNIP MRN complex interacting protein ISO (PMID:27568553) UniProtKB PMID:27568553 NCBI chr 5:174,989,967...175,020,550
Ensembl chr 5:182,299,016...182,340,632
JBrowse link
G NSD2 nuclear receptor binding SET domain protein 2 ISO (MGI:MGI:5462481|PMID:23241889) MGI PMID:23241889 MGI:MGI:5462481 NCBI chr 4:2,009,276...2,119,182
Ensembl chr 4:1,945,307...2,027,425
JBrowse link
G POT1 protection of telomeres 1 ISO (PMID:29227966) CACAO PMID:29227966 NCBI chr 7:116,807,913...116,926,998
Ensembl chr 7:129,487,571...129,605,558
JBrowse link
G SIRT7 sirtuin 7 ISO (MGI:MGI:5789069|PMID:27225932) UniProt PMID:27225932 MGI:MGI:5789069 NCBI chr17:76,317,560...76,323,761
Ensembl chr17:82,020,077...82,026,289
JBrowse link
G USP51 ubiquitin specific peptidase 51 ISO (PMID:27083998) UniProtKB PMID:27083998 NCBI chr  X:47,747,547...47,753,119 JBrowse link
G WAS WASP actin nucleation promoting factor NOT ISO (PMID:29925947) UniProt PMID:29925947 NCBI chr  X:40,982,132...40,989,767
Ensembl chr  X:48,842,765...48,850,380
JBrowse link
regulation of mismatch repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AXIN2 axin 2 ISO (PMID:11017067) BHF-UCL PMID:11017067 NCBI chr17:59,476,336...59,509,358
Ensembl chr17:64,688,416...64,720,086
JBrowse link
regulation of nucleotide-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CUL4A cullin 4A ISO (MGI:MGI:3850765|PMID:19481525) MGI PMID:19481525 MGI:MGI:3850765 NCBI chr13:94,350,484...94,409,183
Ensembl chr13:113,428,271...113,472,701
JBrowse link
G HMGB1 high mobility group box 1 ISO (MGI:MGI:3807115|PMID:18650382) UniProt PMID:18650382 MGI:MGI:3807115 NCBI chr13:11,737,942...11,894,923 JBrowse link
G KAT7 lysine acetyltransferase 7 ISO (PMID:28719581) UniProt PMID:28719581 NCBI chr17:43,875,921...43,916,352
Ensembl chr17:48,605,488...48,645,784
JBrowse link
G RAD52 RAD52 homolog, DNA repair protein ISO (PMID:19506022) MGI PMID:19506022 NCBI chr12:986,372...1,066,708
Ensembl chr12:946,825...985,668
JBrowse link
regulation of single strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PARP1 poly(ADP-ribose) polymerase 1 ISO (MGI:MGI:5616996|PMID:25378300) MGI PMID:25378300 MGI:MGI:5616996 NCBI chr 1:201,820,355...201,867,673
Ensembl chr 1:206,812,981...206,860,356
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12529
    cellular process 11625
      regulation of cellular process 8181
        regulation of cellular response to stress 688
          regulation of response to DNA damage stimulus 217
            regulation of DNA repair 124
              negative regulation of DNA repair + 31
              positive regulation of DNA repair + 74
              regulation of base-excision repair + 2
              regulation of double-strand break repair + 82
              regulation of error-prone translesion synthesis + 0
              regulation of mismatch repair + 4
              regulation of nucleotide-excision repair + 4
              regulation of single strand break repair + 2
Path 2
Term Annotations click to browse term
  biological_process 12529
    metabolic process 7962
      cellular metabolic process 7310
        cellular aromatic compound metabolic process 3867
          nucleobase-containing compound metabolic process 3691
            nucleic acid metabolic process 3388
              DNA metabolic process 671
                DNA repair 336
                  regulation of DNA repair 124
                    negative regulation of DNA repair + 31
                    positive regulation of DNA repair + 74
                    regulation of base-excision repair + 2
                    regulation of double-strand break repair + 82
                    regulation of error-prone translesion synthesis + 0
                    regulation of mismatch repair + 4
                    regulation of nucleotide-excision repair + 4
                    regulation of single strand break repair + 2
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.