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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of DNA repair
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Accession:GO:0006282 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of DNA repair.


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regulation of DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk9 cyclin dependent kinase 9 ISO (PMID:20493174) UniProtKB PMID:20493174 NCBI chrNW_004955419:874,959...883,160 JBrowse link
G Ier3 immediate early response 3 ISO (MGI:MGI:5432078|PMID:20467439) MGI PMID:20467439 MGI:MGI:5432078 NCBI chrNW_004955583:730,353...731,301 JBrowse link
G Sirt7 sirtuin 7 ISO (PMID:27436229), (PMID:30944854) UniProt PMID:27436229, PMID:30944854 NCBI chrNW_004955506:1,252,271...1,258,728 JBrowse link
G Suv39h1 suppressor of variegation 3-9 homolog 1 ISO (MGI:MGI:5913114|PMID:23695662) MGI PMID:23695662 MGI:MGI:5913114 NCBI chrNW_004955543:258,479...271,128 JBrowse link
G Usp1 ubiquitin specific peptidase 1 ISO (PMID:18082604) UniProtKB PMID:18082604 NCBI chrNW_004955423:27,236,242...27,254,064 JBrowse link
negative regulation of DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rps3 ribosomal protein S3 ISO (PMID:17049931) UniProtKB PMID:17049931 NCBI chrNW_004955414:16,436,899...16,442,325 JBrowse link
negative regulation of double-strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Otub1 OTU deubiquitinase, ubiquitin aldehyde binding 1 ISO (PMID:20725033) UniProtKB PMID:20725033 NCBI chrNW_004955422:21,047,184...21,055,596 JBrowse link
G Rnf169 ring finger protein 169 ISO (PMID:22742833)
(PMID:22492721), (PMID:22733822)
UniProtKB PMID:22492721, PMID:22733822, PMID:22742833 NCBI chrNW_004955414:16,899,101...16,962,690 JBrowse link
G Trip12 thyroid hormone receptor interactor 12 ISO (PMID:22884692) UniProtKB PMID:22884692 NCBI chrNW_004955453:5,132,776...5,272,250 JBrowse link
G Twist1 twist family bHLH transcription factor 1 ISO (PMID:17690110) BHF-UCL PMID:17690110 NCBI chrNW_004955410:22,003,981...22,005,483 JBrowse link
G Ubr5 ubiquitin protein ligase E3 component n-recognin 5 ISO (PMID:22884692) UniProtKB PMID:22884692 NCBI chrNW_004955417:26,997,572...27,085,511 JBrowse link
negative regulation of double-strand break repair via homologous recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cgas cyclic GMP-AMP synthase ISO (PMID:30356214)
(MGI:MGI:6241455|PMID:30356214)
UniProt PMID:30356214 MGI:MGI:6241455 NCBI chrNW_004955493:8,593,104...8,607,297 JBrowse link
G Fancb FA complementation group B ISO (MGI:MGI:5648586|PMID:25520194) MGI PMID:25520194 MGI:MGI:5648586 NCBI chrNW_004955519:3,337,138...3,364,963 JBrowse link
G Fbh1 F-box DNA helicase 1 ISO (PMID:19736316)
(MGI:MGI:5566975|PMID:24108124)
UniProtKB PMID:19736316, PMID:24108124 MGI:MGI:5566975 NCBI chrNW_004955421:22,535,777...22,579,965 JBrowse link
G Helb DNA helicase B ISO (PMID:26774285)
(MGI:MGI:5766842|PMID:26774285)
UniProtKB PMID:26774285 MGI:MGI:5766842 NCBI chrNW_004955458:12,929,345...12,971,059 JBrowse link
G Klhl15 kelch like family member 15 ISO (PMID:27561354) UniProtKB PMID:27561354 NCBI chrNW_004955509:4,377,975...4,439,287 JBrowse link
G Mad2l2 mitotic arrest deficient 2 like 2 ISO (PMID:29656893) UniProtKB PMID:29656893 NCBI chrNW_004955486:2,191,903...2,197,193 JBrowse link
G Magef1 MAGE family member F1 ISO (PMID:29225034) UniProtKB PMID:29225034 NCBI chrNW_004955420:22,797,581...22,799,301 JBrowse link
G Parpbp PARP1 binding protein ISO (PMID:22153967) UniProtKB PMID:22153967 NCBI chrNW_004955405:37,297,816...37,357,191 JBrowse link
G Polq DNA polymerase theta ISO (PMID:25642963)
(MGI:MGI:5621198|PMID:25642960)
UniProtKB PMID:25642960, PMID:25642963 MGI:MGI:5621198 NCBI chrNW_004955427:20,779,332...20,895,094 JBrowse link
G Recql5 RecQ like helicase 5 ISO (MGI:MGI:5648586|PMID:25520194) MGI PMID:25520194 MGI:MGI:5648586 NCBI chrNW_004955506:6,574,802...6,612,763 JBrowse link
G Rif1 replication timing regulatory factor 1 ISO (PMID:23333306)
(MGI:MGI:5468037|PMID:23306437), (MGI:MGI:5476381|PMID:23333305)
UniProtKB PMID:23306437, PMID:23333305, PMID:23333306 MGI:MGI:5468037, MGI:MGI:5476381 NCBI chrNW_004955440:16,977,710...17,047,809 JBrowse link
G Shld1 shieldin complex subunit 1 ISO (PMID:29656893) UniProtKB PMID:29656893 NCBI chrNW_004955415:16,180,074...16,282,937 JBrowse link
G Shld2 shieldin complex subunit 2 ISO (PMID:29656893) UniProtKB PMID:29656893 NCBI chrNW_004955510:6,021,477...6,114,745 JBrowse link
G Smchd1 structural maintenance of chromosomes flexible hinge domain containing 1 ISO (PMID:25294876) UniProtKB PMID:25294876 NCBI chrNW_004955402:7,544,265...7,661,191 JBrowse link
G Tp53bp1 tumor protein p53 binding protein 1 ISO (MGI:MGI:5887194|PMID:20362325)
(PMID:23333306), (PMID:23345425)
(MGI:MGI:5476381|PMID:23333305)
UniProtKB PMID:20362325, PMID:23333305, PMID:23333306, PMID:23345425 MGI:MGI:5476381, MGI:MGI:5887194 NCBI chrNW_004955416:9,962,736...10,035,433 JBrowse link
G Ubqln4 ubiquilin 4 ISO (PMID:30612738) UniProt PMID:30612738 NCBI chrNW_004955545:2,218,794...2,236,665 JBrowse link
negative regulation of double-strand break repair via nonhomologous end joining term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aunip aurora kinase A and ninein interacting protein ISO (PMID:29042561) UniProtKB PMID:29042561 NCBI chrNW_004955452:5,323,345...5,336,589 JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor ISO (PMID:25820262) UniProt PMID:25820262 NCBI chrNW_004955556:745,175...812,215 JBrowse link
G Hmga2 high mobility group AT-hook 2 ISO (PMID:19549901) UniProtKB PMID:19549901 NCBI chrNW_004955458:12,493,790...12,624,805 JBrowse link
G Hsf1 heat shock transcription factor 1 ISO (PMID:26359349) UniProtKB PMID:26359349 NCBI chrNW_004955454:2,907,265...2,932,352 JBrowse link
G Nudt16l1 nudix hydrolase 16 like 1 ISO (PMID:28241136) UniProtKB PMID:28241136 NCBI chrNW_004955442:12,761,962...12,777,549 JBrowse link
negative regulation of double-strand break repair via single-strand annealing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ogg1 8-oxoguanine DNA glycosylase ISO (PMID:19506022) MGI PMID:19506022 NCBI chrNW_004955561:1,277,362...1,282,949 JBrowse link
positive regulation of base-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fam168a family with sequence similarity 168 member A ISO (PMID:25260657) UniProtKB PMID:25260657 NCBI chrNW_004955414:17,877,179...18,071,977 JBrowse link
G Rps3 ribosomal protein S3 ISO (PMID:18973764) UniProtKB PMID:18973764 NCBI chrNW_004955414:16,436,899...16,442,325 JBrowse link
positive regulation of DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abraxas1 abraxas 1, BRCA1 A complex subunit ISO (PMID:17525340), (PMID:17643121), (PMID:19261748) UniProtKB PMID:17525340, PMID:17643121, PMID:19261748 NCBI chrNW_004955474:6,252,321...6,265,518 JBrowse link
G Apbb1 amyloid beta precursor protein binding family B member 1 ISO PMID:19282473
(MGI:MGI:3698695|PMID:17121854)
UniProt
UniProtKB
PMID:17121854, PMID:19282473 MGI:MGI:3698695, RGD:8553580 NCBI chrNW_004955414:22,121,867...22,137,849 JBrowse link
G Babam1 BRISC and BRCA1 A complex member 1 ISO (PMID:19261746), (PMID:19261748), (PMID:19261749) UniProtKB PMID:19261746, PMID:19261748, PMID:19261749 NCBI chrNW_004955524:939,250...944,457 JBrowse link
G Babam2 BRISC and BRCA1 A complex member 2 ISO (PMID:19261748) UniProtKB PMID:19261748 NCBI chrNW_004955469:9,831,488...10,246,631 JBrowse link
G Brca1 BRCA1 DNA repair associated ISO (PMID:17525340), (PMID:17643121), (PMID:19261748) UniProtKB PMID:17525340, PMID:17643121, PMID:19261748 NCBI chrNW_004955451:16,819,463...16,870,780 JBrowse link
G Brcc3 BRCA1/BRCA2-containing complex subunit 3 ISO (PMID:17525341), (PMID:19261746), (PMID:19261748) UniProtKB PMID:17525341, PMID:19261746, PMID:19261748 NCBI chrNW_004955594:551,407...613,772 JBrowse link
G Cbx8 chromobox 8 ISO RGD PMID:23572236 RGD:9586727 NCBI chrNW_004955506:3,035,510...3,038,204 JBrowse link
G Cebpg CCAAT enhancer binding protein gamma ISO (PMID:16255782) UniProtKB PMID:16255782 NCBI chrNW_004955468:3,137,106...3,141,733 JBrowse link
G Dhx9 DExH-box helicase 9 ISO (PMID:24049074) UniProtKB PMID:24049074 NCBI chrNW_004955406:21,697,813...21,743,551 JBrowse link
G Egfr epidermal growth factor receptor ISO (PMID:17115032) UniProtKB PMID:17115032 NCBI chrNW_004955456:321,222...456,431 JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor ISO (PMID:22483866) UniProt PMID:22483866 NCBI chrNW_004955556:745,175...812,215 JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 ISO (PMID:19234442) UniProtKB PMID:19234442 NCBI chrNW_004955444:8,336,071...8,655,041 JBrowse link
G Eya3 EYA transcriptional coactivator and phosphatase 3 ISO (PMID:19234442) UniProtKB PMID:19234442 NCBI chrNW_004955452:7,148,762...7,273,886 JBrowse link
G Fgf10 fibroblast growth factor 10 ISO (PMID:14975937) UniProtKB PMID:14975937 NCBI chrNW_004955446:18,163,117...18,244,840 JBrowse link
G Mgmt O-6-methylguanine-DNA methyltransferase ISO RGD PMID:1945835 RGD:729332 NCBI chrNW_004955477:7,103,035...7,375,073 JBrowse link
G Npas2 neuronal PAS domain protein 2 ISO (PMID:18819933) UniProtKB PMID:18819933 NCBI chrNW_004955470:6,826,541...6,906,814 JBrowse link
G Parg poly(ADP-ribose) glycohydrolase ISO RGD PMID:15158362 RGD:2316739 NCBI chrNW_004955556:435,264...539,935 JBrowse link
G Pcna proliferating cell nuclear antigen ISO (PMID:24939902) UniProtKB PMID:24939902 NCBI chrNW_004955415:15,744,601...15,748,910 JBrowse link
G Rnf168 ring finger protein 168 ISO (PMID:19203578), (PMID:19203579)
(PMID:23760478)
UniProtKB PMID:19203578, PMID:19203579, PMID:23760478 NCBI chrNW_004955420:12,656,815...12,676,836 JBrowse link
G Rnf8 ring finger protein 8 ISO (PMID:18001824), (PMID:18001825) UniProtKB PMID:18001824, PMID:18001825 NCBI chrNW_004955437:5,807,592...5,832,213 JBrowse link
G Rps3 ribosomal protein S3 ISO (PMID:23911537) UniProtKB PMID:23911537 NCBI chrNW_004955414:16,436,899...16,442,325 JBrowse link
G Sirt1 sirtuin 1 ISO (PMID:19934257) UniProtKB PMID:19934257 NCBI chrNW_004955425:20,280,725...20,307,663 JBrowse link
G Smchd1 structural maintenance of chromosomes flexible hinge domain containing 1 ISO (PMID:24790221) UniProtKB PMID:24790221 NCBI chrNW_004955402:7,544,265...7,661,191 JBrowse link
G Tigar TP53 induced glycolysis regulatory phosphatase ISO (PMID:25928429) UniProtKB PMID:25928429 NCBI chrNW_004955413:2,129,719...2,153,873 JBrowse link
G Tmem161a transmembrane protein 161A ISO (PMID:16551573) BHF-UCL PMID:16551573 NCBI chrNW_004955524:2,667,089...2,674,550 JBrowse link
G Trim28 tripartite motif containing 28 ISO (PMID:17178852) UniProtKB PMID:17178852 NCBI chrNW_004955584:1,148,903...1,156,001 JBrowse link
G Ube2n ubiquitin conjugating enzyme E2 N ISO (PMID:16129784) HGNC PMID:16129784 NCBI chrNW_004955405:30,240,402...30,278,362 JBrowse link
G Ube2v2 ubiquitin conjugating enzyme E2 V2 ISO RGD PMID:12750002 RGD:1299567 NCBI chrNW_004955454:7,951,876...7,998,686 JBrowse link
G Uimc1 ubiquitin interaction motif containing 1 ISO (PMID:17525340), (PMID:17525341), (PMID:17525342), (PMID:17643121), (PMID:19261748) UniProtKB PMID:17525340, PMID:17525341, PMID:17525342, PMID:17643121, PMID:19261748 NCBI chrNW_004955408:29,154,373...29,274,817 JBrowse link
G Wrap53 WD repeat containing antisense to TP53 ISO (PMID:25512560) UniProtKB PMID:25512560 NCBI chrNW_004955467:9,225,506...9,240,756 JBrowse link
positive regulation of DNA repair by transcription from RNA polymerase II promoter term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gtf2i general transcription factor IIi ISO (PMID:9334314) ARUK-UCL PMID:9334314 NCBI chrNW_004955456:13,371,306...13,461,846 JBrowse link
G Prrx1 paired related homeobox 1 ISO (PMID:9334314) ARUK-UCL PMID:9334314 NCBI chrNW_004955462:6,919,905...6,991,733 JBrowse link
positive regulation of double-strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx11 DEAD/H-box helicase 11 ISO (PMID:23797032) UniProtKB PMID:23797032 NCBI chrNW_004955524:1,932,988...1,957,231 JBrowse link
G Fmn2 formin 2 ISO (PMID:26287480) UniProt PMID:26287480 NCBI chrNW_004955406:11,358,585...11,666,102 JBrowse link
G Foxm1 forkhead box M1 ISO (MGI:MGI:3698692|PMID:17101782)
(PMID:17101782)
UniProtKB PMID:17101782 MGI:MGI:3698692 NCBI chrNW_004955429:18,392,545...18,405,254 JBrowse link
G Mgmt O-6-methylguanine-DNA methyltransferase ISO (PMID:24147153) BHF-UCL PMID:24147153 NCBI chrNW_004955477:7,103,035...7,375,073 JBrowse link
G Nudt16 nudix hydrolase 16 ISO (PMID:20385596) UniProtKB PMID:20385596 NCBI chrNW_004955501:7,083,068...7,085,505 JBrowse link
G Slf1 SMC5-SMC6 complex localization factor 1 ISO (PMID:25931565) UniProtKB PMID:25931565 NCBI chrNW_004955418:17,756,610...17,818,552 JBrowse link
G Slf2 SMC5-SMC6 complex localization factor 2 ISO (PMID:25931565) UniProtKB PMID:25931565 NCBI chrNW_004955485:9,221,419...9,269,308 JBrowse link
G Spidr scaffold protein involved in DNA repair ISO (PMID:23509288) UniProtKB PMID:23509288 NCBI chrNW_004955454:7,360,144...7,710,077 JBrowse link
G Spire1 spire type actin nucleation factor 1 ISO (PMID:26287480) UniProt PMID:26287480 NCBI chrNW_004955402:920,730...1,011,339 JBrowse link
G Spire2 spire type actin nucleation factor 2 ISO (PMID:26287480) UniProt PMID:26287480 NCBI chrNW_004955541:3,341,705...3,359,646 JBrowse link
G Timeless timeless circadian regulator ISO (PMID:23797032) UniProtKB PMID:23797032 NCBI chrNW_004955458:3,999,143...4,029,523 JBrowse link
G Wrap53 WD repeat containing antisense to TP53 ISO (PMID:27715493) UniProtKB PMID:27715493 NCBI chrNW_004955467:9,225,506...9,240,756 JBrowse link
G Zcwpw1 zinc finger CW-type and PWWP domain containing 1 ISO (MGI:MGI:6358520|PMID:31453335) ARUK-UCL PMID:31453335 MGI:MGI:6358520 NCBI chrNW_004955573:531,277...552,703 JBrowse link
positive regulation of double-strand break repair via homologous recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actr2 actin related protein 2 ISO (PMID:29925947) UniProt PMID:29925947 NCBI chrNW_004955424:19,293,949...19,333,170 JBrowse link
G Arid2 AT-rich interaction domain 2 ISO (PMID:28381560) CACAO PMID:28381560 NCBI chrNW_004955500:4,998,555...5,177,180 JBrowse link
G Blm BLM RecQ like helicase ISO (MGI:MGI:5648586|PMID:25520194) MGI PMID:25520194 MGI:MGI:5648586 NCBI chrNW_004955416:14,814,753...14,899,865 JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor ISO (PMID:25820262) UniProt PMID:25820262 NCBI chrNW_004955556:745,175...812,215 JBrowse link
G Fancb FA complementation group B ISO (MGI:MGI:5648586|PMID:25520194) MGI PMID:25520194 MGI:MGI:5648586 NCBI chrNW_004955519:3,337,138...3,364,963 JBrowse link
G Mms19 MMS19 homolog, cytosolic iron-sulfur assembly component ISO (PMID:29225034) UniProtKB PMID:29225034 NCBI chrNW_004955507:3,593,413...3,623,781 JBrowse link
G Mrnip MRN complex interacting protein ISO (PMID:27568553) UniProtKB PMID:27568553 NCBI chrNW_004955408:726,124...758,851 JBrowse link
G Parp1 poly(ADP-ribose) polymerase 1 ISO (PMID:26344098), (PMID:30356214) UniProt PMID:26344098, PMID:30356214 NCBI chrNW_004955489:520,875...557,609 JBrowse link
G Timeless timeless circadian regulator ISO (PMID:26344098), (PMID:30356214) UniProt PMID:26344098, PMID:30356214 NCBI chrNW_004955458:3,999,143...4,029,523 JBrowse link
G Was WASP actin nucleation promoting factor ISO (PMID:29925947) UniProt PMID:29925947 NCBI chrNW_004955543:243,618...253,489 JBrowse link
G Wrap53 WD repeat containing antisense to TP53 ISO (PMID:25512560) UniProtKB PMID:25512560 NCBI chrNW_004955467:9,225,506...9,240,756 JBrowse link
positive regulation of double-strand break repair via nonhomologous end joining term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dtx3l deltex E3 ubiquitin ligase 3L ISO (PMID:28525742) UniProtKB PMID:28525742 NCBI chrNW_004955427:21,806,170...21,812,701 JBrowse link
G Fh fumarate hydratase ISO (PMID:26237645) UniProt PMID:26237645 NCBI chrNW_004955406:10,535,801...10,558,649 JBrowse link
G Kdm4d lysine demethylase 4D ISO (PMID:24550317) MGI PMID:24550317 NCBI chrNW_004955605:7,585...32,650 JBrowse link
G Kmt5b lysine methyltransferase 5B ISO (PMID:28114273) UniProt PMID:28114273 NCBI chrNW_004955422:17,626,606...17,684,890 JBrowse link
G Kmt5c lysine methyltransferase 5C ISO (PMID:28114273) UniProt PMID:28114273 NCBI chrNW_004955567:895,334...901,240 JBrowse link
G LOC102020128 histone-lysine N-methyltransferase SETMAR ISO (PMID:20620605), (PMID:21491884) UniProtKB PMID:20620605, PMID:21491884 NCBI chrNW_004955421:9,066,906...9,080,352 JBrowse link
G Mad2l2 mitotic arrest deficient 2 like 2 ISO (PMID:29656893) UniProtKB PMID:29656893 NCBI chrNW_004955486:2,191,903...2,197,193 JBrowse link
G Parp3 poly(ADP-ribose) polymerase family member 3 ISO (PMID:24598253) UniProt PMID:24598253 NCBI chrNW_004955532:3,591,484...3,597,549 JBrowse link
G Parp9 poly(ADP-ribose) polymerase family member 9 ISO (PMID:28525742) UniProtKB PMID:28525742 NCBI chrNW_004955427:21,770,158...21,806,091 JBrowse link
G Pnkp polynucleotide kinase 3'-phosphatase ISO (PMID:12032095) CACAO PMID:12032095 NCBI chrNW_004955559:1,064,924...1,070,120 JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit ISO (PMID:26237645) UniProt PMID:26237645 NCBI chrNW_004955454:7,733,697...7,890,896 JBrowse link
G Rif1 replication timing regulatory factor 1 ISO (MGI:MGI:5468037|PMID:23306437), (MGI:MGI:5476381|PMID:23333305)
(PMID:28241136)
UniProtKB PMID:23306437, PMID:23333305, PMID:28241136 MGI:MGI:5468037, MGI:MGI:5476381 NCBI chrNW_004955440:16,977,710...17,047,809 JBrowse link
G Shld1 shieldin complex subunit 1 ISO (PMID:29656893) UniProtKB PMID:29656893 NCBI chrNW_004955415:16,180,074...16,282,937 JBrowse link
G Shld2 shieldin complex subunit 2 ISO (PMID:29656893), (PMID:29789392) UniProtKB PMID:29656893, PMID:29789392 NCBI chrNW_004955510:6,021,477...6,114,745 JBrowse link
G Smchd1 structural maintenance of chromosomes flexible hinge domain containing 1 ISO (PMID:25294876) UniProtKB PMID:25294876 NCBI chrNW_004955402:7,544,265...7,661,191 JBrowse link
G Top2b DNA topoisomerase II beta ISO RGD PMID:22019940 RGD:13432143 NCBI chrNW_004955430:17,457,603...17,523,115 JBrowse link
G Wrap53 WD repeat containing antisense to TP53 ISO (PMID:25512560) UniProtKB PMID:25512560 NCBI chrNW_004955467:9,225,506...9,240,756 JBrowse link
positive regulation of mismatch repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hdac10 histone deacetylase 10 ISO (PMID:26221039) UniProt PMID:26221039 NCBI chrNW_004955413:33,272,600...33,277,893 JBrowse link
G Hmgb1 high mobility group box 1 ISO (PMID:15014079) UniProtKB PMID:15014079 NCBI chrNW_004955431:15,373,207...15,377,339 JBrowse link
G Prkcg protein kinase C gamma ISO (PMID:15808853) HGNC PMID:15808853 NCBI chrNW_004955604:262,182...279,259 JBrowse link
positive regulation of single strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Parp1 poly(ADP-ribose) polymerase 1 ISO (PMID:28002403)
(MGI:MGI:5902647|PMID:28002403)
UniProtKB PMID:28002403 MGI:MGI:5902647 NCBI chrNW_004955489:520,875...557,609 JBrowse link
G Xrcc1 X-ray repair cross complementing 1 ISO (PMID:28002403)
(MGI:MGI:5902647|PMID:28002403)
UniProtKB PMID:28002403 MGI:MGI:5902647 NCBI chrNW_004955555:1,293,416...1,315,839 JBrowse link
regulation of DNA double-strand break processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Helb DNA helicase B ISO (PMID:26774285)
(MGI:MGI:5766842|PMID:26774285)
UniProtKB PMID:26774285 MGI:MGI:5766842 NCBI chrNW_004955458:12,929,345...12,971,059 JBrowse link
regulation of double-strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dek DEK proto-oncogene ISO (PMID:21653549) MGI PMID:21653549 NCBI chrNW_004955408:28,470,207...28,472,083 JBrowse link
G Pml PML nuclear body scaffold ISO (PMID:21639834) UniProtKB PMID:21639834 NCBI chrNW_004955450:3,654,854...3,692,057 JBrowse link
regulation of double-strand break repair via homologous recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chek1 checkpoint kinase 1 ISO (PMID:15665856) UniProtKB PMID:15665856 NCBI chrNW_004955412:26,627,606...26,650,554 JBrowse link
G Fignl1 fidgetin like 1 ISO (PMID:23754376) UniProtKB PMID:23754376 NCBI chrNW_004955456:3,588,190...3,594,559 JBrowse link
G Kdm1a lysine demethylase 1A ISO (PMID:24217620) MGI PMID:24217620 NCBI chrNW_004955452:3,044,042...3,104,650 JBrowse link
G Ppp4c protein phosphatase 4 catalytic subunit ISO (PMID:20154705) UniProtKB PMID:20154705 NCBI chrNW_004955493:6,894,849...6,901,344 JBrowse link
G Ppp4r2 protein phosphatase 4 regulatory subunit 2 ISO (PMID:20154705) UniProtKB PMID:20154705 NCBI chrNW_004955421:15,165,836...15,220,509 JBrowse link
G Rad51 RAD51 recombinase ISO (PMID:23754376) UniProtKB PMID:23754376 NCBI chrNW_004955416:7,566,715...7,590,628 JBrowse link
G Rad51ap1 RAD51 associated protein 1 ISO (PMID:23754376) UniProtKB PMID:23754376 NCBI chrNW_004955413:2,335,431...2,362,781 JBrowse link
G Rpa2 replication protein A2 ISO (PMID:20154705) UniProtKB PMID:20154705 NCBI chrNW_004955452:7,080,641...7,098,009 JBrowse link
G Rtel1 regulator of telomere elongation helicase 1 ISO (PMID:18957201) UniProtKB PMID:18957201 NCBI chrNW_004955528:531,680...578,003 JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase ISO (PMID:24843002) UniProtKB PMID:24843002 NCBI chrNW_004955420:25,070,626...25,178,410 JBrowse link
G Sirt6 sirtuin 6 ISO (PMID:19135889) UniProtKB PMID:19135889 NCBI chrNW_004955495:4,641,883...4,650,518 JBrowse link
G Spidr scaffold protein involved in DNA repair ISO (PMID:23754376) UniProtKB PMID:23754376 NCBI chrNW_004955454:7,360,144...7,710,077 JBrowse link
G Terf2ip TERF2 interacting protein ISO (MGI:MGI:4440768|PMID:20339076) UniProtKB PMID:20339076 MGI:MGI:4440768 NCBI chrNW_004955484:1,917,902...1,924,482 JBrowse link
G Tex15 testis expressed 15, meiosis and synapsis associated ISO (MGI:MGI:3794139|PMID:18283110) MGI PMID:18283110 MGI:MGI:3794139 NCBI chrNW_004955463:7,296,204...7,360,935 JBrowse link
G Znf365 zinc finger protein 365 ISO (PMID:23966166) UniProtKB PMID:23966166 NCBI chrNW_004955425:15,652,373...15,675,255 JBrowse link
regulation of double-strand break repair via nonhomologous end joining term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actr2 actin related protein 2 NOT ISO (PMID:29925947) UniProt PMID:29925947 NCBI chrNW_004955424:19,293,949...19,333,170 JBrowse link
G Dek DEK proto-oncogene ISO (MGI:MGI:5317387|PMID:21653549) MGI PMID:21653549 MGI:MGI:5317387 NCBI chrNW_004955408:28,470,207...28,472,083 JBrowse link
G Mrnip MRN complex interacting protein ISO (PMID:27568553) UniProtKB PMID:27568553 NCBI chrNW_004955408:726,124...758,851 JBrowse link
G Nsd2 nuclear receptor binding SET domain protein 2 ISO (MGI:MGI:5462481|PMID:23241889) MGI PMID:23241889 MGI:MGI:5462481 NCBI chrNW_004955514:1,084,522...1,162,624 JBrowse link
G Pot1 protection of telomeres 1 ISO (PMID:29227966) CACAO PMID:29227966 NCBI chrNW_004955479:6,140,599...6,230,512 JBrowse link
G Sirt7 sirtuin 7 ISO (MGI:MGI:5789069|PMID:27225932) UniProt PMID:27225932 MGI:MGI:5789069 NCBI chrNW_004955506:1,252,271...1,258,728 JBrowse link
G Was WASP actin nucleation promoting factor NOT ISO (PMID:29925947) UniProt PMID:29925947 NCBI chrNW_004955543:243,618...253,489 JBrowse link
regulation of mismatch repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin2 axin 2 ISO (PMID:11017067) BHF-UCL PMID:11017067 NCBI chrNW_004955478:4,952,551...4,982,223 JBrowse link
regulation of nucleotide-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cul4a cullin 4A ISO (MGI:MGI:3850765|PMID:19481525) MGI PMID:19481525 MGI:MGI:3850765 NCBI chrNW_004955404:583,261...617,914 JBrowse link
G Hmgb1 high mobility group box 1 ISO (MGI:MGI:3807115|PMID:18650382) UniProt PMID:18650382 MGI:MGI:3807115 NCBI chrNW_004955431:15,373,207...15,377,339 JBrowse link
G Kat7 lysine acetyltransferase 7 ISO (PMID:28719581) UniProt PMID:28719581 NCBI chrNW_004955451:11,770,201...11,802,992 JBrowse link
G Rad52 RAD52 homolog, DNA repair protein ISO (PMID:19506022) MGI PMID:19506022 NCBI chrNW_004955454:6,206,195...6,227,859 JBrowse link
regulation of single strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Parp1 poly(ADP-ribose) polymerase 1 ISO (MGI:MGI:5616996|PMID:25378300) MGI PMID:25378300 MGI:MGI:5616996 NCBI chrNW_004955489:520,875...557,609 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11862
    cellular process 11059
      regulation of cellular process 7832
        regulation of cellular response to stress 668
          regulation of response to DNA damage stimulus 208
            regulation of DNA repair 118
              negative regulation of DNA repair + 28
              positive regulation of DNA repair + 71
              regulation of base-excision repair + 2
              regulation of double-strand break repair + 77
              regulation of error-prone translesion synthesis + 0
              regulation of mismatch repair + 4
              regulation of nucleotide-excision repair + 4
              regulation of single strand break repair + 2
Path 2
Term Annotations click to browse term
  biological_process 11862
    metabolic process 7593
      cellular metabolic process 7005
        cellular aromatic compound metabolic process 3725
          nucleobase-containing compound metabolic process 3554
            nucleic acid metabolic process 3267
              DNA metabolic process 652
                DNA repair 330
                  regulation of DNA repair 118
                    negative regulation of DNA repair + 28
                    positive regulation of DNA repair + 71
                    regulation of base-excision repair + 2
                    regulation of double-strand break repair + 77
                    regulation of error-prone translesion synthesis + 0
                    regulation of mismatch repair + 4
                    regulation of nucleotide-excision repair + 4
                    regulation of single strand break repair + 2
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.