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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of DNA repair
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Accession:GO:0006282 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of DNA repair.


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regulation of DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDK9 cyclin dependent kinase 9 IEA Ensembl GO_REF:0000107 NCBI chr 9:55,615,271...55,619,493
Ensembl chr 9:55,615,827...55,620,236
JBrowse link
G IER3 immediate early response 3 ISO (MGI:MGI:5432078|PMID:20467439) MGI PMID:20467439 MGI:MGI:5432078 NCBI chr12:529,002...530,328
Ensembl chr12:529,339...530,232
JBrowse link
G PARG poly(ADP-ribose) glycohydrolase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr28:1,651,698...1,767,210
Ensembl chr28:1,652,670...1,766,895
JBrowse link
G RADX RPA1 related single stranded DNA binding protein, X-linked IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:80,146,335...80,234,732
Ensembl chr  X:80,146,040...80,235,739
JBrowse link
G SIRT7 sirtuin 7 ISO (PMID:27436229), (PMID:30944854) UniProt PMID:27436229, PMID:30944854 NCBI chr 9:377,141...383,355
Ensembl chr 9:376,445...442,919
JBrowse link
G SUV39H1 suppressor of variegation 3-9 homolog 1 ISO (MGI:MGI:5913114|PMID:23695662) MGI PMID:23695662 MGI:MGI:5913114 NCBI chr  X:41,894,623...41,907,854
Ensembl chr  X:41,893,045...41,906,403
JBrowse link
G USP1 ubiquitin specific peptidase 1 IEA Ensembl
InterPro
GO_REF:0000002, GO_REF:0000107 NCBI chr 5:47,655,533...47,666,767
Ensembl chr 5:47,656,039...47,666,210
JBrowse link
G WRNIP1 WRN helicase interacting protein 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:3,103,507...3,127,657
Ensembl chr35:3,103,418...3,127,504
JBrowse link
negative regulation of DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RPS3 ribosomal protein S3 ISO (PMID:17049931) UniProtKB PMID:17049931 NCBI chr21:23,180,515...23,187,034
Ensembl chr21:23,180,515...23,187,034
JBrowse link
negative regulation of double-strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OTUB1 OTU domain, ubiquitin aldehyde binding 1 ISO (PMID:20725033) UniProtKB PMID:20725033 NCBI chr 3:40,225,531...40,226,507
Ensembl chr 3:40,225,474...40,226,612
JBrowse link
G OTUB1 OTU deubiquitinase, ubiquitin aldehyde binding 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:53,033,623...53,041,011
Ensembl chr18:53,034,387...53,041,481
JBrowse link
G OTUB2 OTU deubiquitinase, ubiquitin aldehyde binding 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:63,094,378...63,114,028
Ensembl chr 8:63,095,238...63,118,441
JBrowse link
G RNF169 ring finger protein 169 IEA Ensembl GO_REF:0000107 NCBI chr21:23,574,478...23,655,305
Ensembl chr21:23,579,370...23,655,290
JBrowse link
G TRIP12 thyroid hormone receptor interactor 12 IEA Ensembl GO_REF:0000107 NCBI chr25:42,060,103...42,208,326
Ensembl chr25:42,060,991...42,208,054
JBrowse link
G UBR5 ubiquitin protein ligase E3 component n-recognin 5 IEA Ensembl GO_REF:0000107 NCBI chr13:3,887,408...4,023,364
Ensembl chr13:3,879,220...4,023,955
JBrowse link
negative regulation of double-strand break repair via homologous recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CGAS cyclic GMP-AMP synthase IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr12:35,511,920...35,528,759
Ensembl chr12:35,512,860...35,528,596
JBrowse link
G FANCB FA complementation group B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:10,690,826...11,140,838
Ensembl chr  X:11,095,200...11,141,029
JBrowse link
G FBH1 F-box DNA helicase 1 IEA Ensembl GO_REF:0000107 NCBI chr 2:30,047,994...30,095,761
Ensembl chr 2:30,048,567...30,095,696
JBrowse link
G HELB DNA helicase B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:8,766,023...8,797,055
Ensembl chr10:8,765,617...8,798,092
JBrowse link
G KLHL15 kelch like family member 15 IEA Ensembl GO_REF:0000107 NCBI chr  X:19,617,629...19,651,076
Ensembl chr  X:19,618,569...19,650,728
JBrowse link
G MAD2L2 mitotic arrest deficient 2 like 2 IEA Ensembl GO_REF:0000107 NCBI chr 2:84,539,724...84,549,402
Ensembl chr 2:84,545,226...84,549,356
JBrowse link
G MAGEF1 MAGE family member F1 IEA Ensembl GO_REF:0000107 NCBI chr34:17,543,381...17,545,089
Ensembl chr34:17,543,906...17,544,868
JBrowse link
G PARPBP PARP1 binding protein IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr15:40,972,098...41,039,044
Ensembl chr15:40,976,598...41,036,068
JBrowse link
G POLQ DNA polymerase theta IEA Ensembl GO_REF:0000107 NCBI chr33:24,713,174...24,837,113
Ensembl chr33:24,714,086...24,837,402
JBrowse link
G RADX RPA1 related single stranded DNA binding protein, X-linked IEA Ensembl GO_REF:0000107 NCBI chr  X:80,146,335...80,234,732
Ensembl chr  X:80,146,040...80,235,739
JBrowse link
G RECQL5 RecQ like helicase 5 IEA Ensembl GO_REF:0000107 NCBI chr 9:4,902,753...4,940,442
Ensembl chr 9:4,903,477...4,940,436
JBrowse link
G RIF1 replication timing regulatory factor 1 IEA Ensembl GO_REF:0000107 NCBI chr19:52,661,278...52,711,969
Ensembl chr19:52,661,155...52,709,279
JBrowse link
G RMI2 RecQ mediated genome instability 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:31,440,493...31,445,318
Ensembl chr 6:31,441,517...31,445,310
JBrowse link
G SHLD1 shieldin complex subunit 1 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr24:15,957,863...16,037,336
Ensembl chr24:15,957,852...16,038,008
JBrowse link
G SHLD2 shieldin complex subunit 2 IEA Ensembl GO_REF:0000107 NCBI chr 4:34,665,111...34,740,645
Ensembl chr 4:34,688,245...34,763,705
JBrowse link
G SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 ISO (PMID:25294876) UniProtKB PMID:25294876 NCBI chr 7:69,359,286...69,505,067
Ensembl chr 7:69,358,447...69,621,067
JBrowse link
G TP53BP1 tumor protein p53 binding protein 1 IEA Ensembl GO_REF:0000107 NCBI chr30:10,263,650...10,362,646
Ensembl chr30:10,263,650...10,336,134
JBrowse link
G UBQLN4 ubiquilin 4 IEA Ensembl GO_REF:0000107 NCBI chr 7:41,764,209...41,778,457
Ensembl chr 7:41,764,253...41,777,002
JBrowse link
negative regulation of double-strand break repair via nonhomologous end joining term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AUNIP aurora kinase A and ninein interacting protein IEA Ensembl GO_REF:0000107 NCBI chr 2:74,097,435...74,116,824
Ensembl chr 2:74,097,508...74,118,085
JBrowse link
G CYREN cell cycle regulator of NHEJ IEA Ensembl GO_REF:0000107 NCBI chr16:12,994,508...13,003,632
Ensembl chr16:12,994,479...12,998,435
JBrowse link
G ERCC6 ERCC excision repair 6, chromatin remodeling factor IEA Ensembl GO_REF:0000107 NCBI chr28:1,358,383...1,432,276
Ensembl chr28:1,361,107...1,427,162
JBrowse link
G HMGA2 high mobility group AT-hook 2 ISO (PMID:19549901) UniProtKB PMID:19549901 NCBI chr10:8,348,101...8,491,435 JBrowse link
G HSF1 heat shock transcription factor 1 IEA Ensembl GO_REF:0000107 NCBI chr13:37,724,741...37,745,259
Ensembl chr13:37,724,759...37,745,252
JBrowse link
G NUDT16L1 nudix hydrolase 16 like 1 IEA Ensembl GO_REF:0000107 NCBI chr 6:36,711,351...36,713,931
Ensembl chr 6:36,711,671...36,713,896
JBrowse link
negative regulation of double-strand break repair via single-strand annealing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OGG1 8-oxoguanine DNA glycosylase IEA Ensembl GO_REF:0000107 NCBI chr20:8,486,150...8,491,448
Ensembl chr20:8,480,005...8,491,264
JBrowse link
positive regulation of base-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FAM168A family with sequence similarity 168 member A IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr21:24,644,700...24,832,307
Ensembl chr21:24,768,108...24,827,784
JBrowse link
G RPS3 ribosomal protein S3 ISO (PMID:18973764) UniProtKB PMID:18973764 NCBI chr21:23,180,515...23,187,034
Ensembl chr21:23,180,515...23,187,034
JBrowse link
positive regulation of DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABRAXAS1 abraxas 1, BRCA1 A complex subunit IEA Ensembl GO_REF:0000107 NCBI chr32:7,298,789...7,316,665
Ensembl chr32:7,298,790...7,317,001
JBrowse link
G APBB1 amyloid beta precursor protein binding family B member 1 ISO PMID:19282473
(MGI:MGI:3698695|PMID:17121854)
UniProt
UniProtKB
PMID:17121854, PMID:19282473 MGI:MGI:3698695, RGD:8553580 NCBI chr21:29,719,386...29,741,658
Ensembl chr21:29,719,589...29,759,046
JBrowse link
G BABAM1 BRISC and BRCA1 A complex member 1 IEA Ensembl GO_REF:0000107 NCBI chr20:45,466,808...45,474,953
Ensembl chr20:45,466,805...45,473,009
JBrowse link
G BABAM2 BRISC and BRCA1 A complex member 2 IEA Ensembl GO_REF:0000107 NCBI chr17:21,886,127...22,288,513
Ensembl chr17:21,889,862...22,288,504
JBrowse link
G BRCA1 BRCA1 DNA repair associated IEA Ensembl GO_REF:0000107 NCBI chr 9:19,958,941...20,025,494
Ensembl chr 9:19,958,391...20,025,494
JBrowse link
G BRCC3 BRCA1/BRCA2-containing complex subunit 3 ISO (PMID:17525341), (PMID:19261746), (PMID:19261748) UniProtKB PMID:17525341, PMID:19261746, PMID:19261748 NCBI chr  X:123,081,262...123,143,509 JBrowse link
G CBX8 chromobox 8 ISO RGD PMID:23572236 RGD:9586727 NCBI chr 9:1,839,701...1,842,355
Ensembl chr 9:1,839,096...1,843,099
JBrowse link
G CEBPG CCAAT enhancer binding protein gamma IEA Ensembl GO_REF:0000107 NCBI chr 1:118,777,110...118,784,397
Ensembl chr 1:118,778,224...118,778,667
JBrowse link
G DHX9 DExH-box helicase 9 IEA Ensembl GO_REF:0000107 NCBI chr 7:16,233,763...16,292,576
Ensembl chr 7:16,233,814...16,292,618
JBrowse link
G EGFR epidermal growth factor receptor IEA Ensembl GO_REF:0000107 NCBI chr18:5,983,669...6,044,092
Ensembl chr18:5,982,770...6,042,631
JBrowse link
G ERCC6 ERCC excision repair 6, chromatin remodeling factor ISO (PMID:22483866) UniProt PMID:22483866 NCBI chr28:1,358,383...1,432,276
Ensembl chr28:1,361,107...1,427,162
JBrowse link
G ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:47,502,777...47,559,012
Ensembl chr 2:47,503,762...47,558,889
JBrowse link
G EYA1 EYA transcriptional coactivator and phosphatase 1 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr29:20,176,306...20,595,131
Ensembl chr29:20,177,014...20,525,653
JBrowse link
G EYA2 EYA transcriptional coactivator and phosphatase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr24:34,126,086...34,308,412
Ensembl chr24:34,082,197...34,308,423
JBrowse link
G EYA3 EYA transcriptional coactivator and phosphatase 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:72,313,412...72,417,729
Ensembl chr 2:72,328,362...72,414,058
JBrowse link
G EYA4 EYA transcriptional coactivator and phosphatase 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:26,208,514...26,514,601
Ensembl chr 1:26,272,448...26,514,201
JBrowse link
G FGF10 fibroblast growth factor 10 IEA Ensembl GO_REF:0000107 NCBI chr 4:65,851,130...65,930,944
Ensembl chr 4:65,851,069...65,928,192
JBrowse link
G MGMT O-6-methylguanine-DNA methyltransferase ISO RGD PMID:1945835 RGD:729332 NCBI chr28:38,204,611...38,427,482
Ensembl chr28:38,204,610...38,427,380
JBrowse link
G NPAS2 neuronal PAS domain protein 2 IEA Ensembl GO_REF:0000107 NCBI chr10:41,846,766...42,005,058
Ensembl chr10:41,847,625...42,005,469
JBrowse link
G PARG poly(ADP-ribose) glycohydrolase ISO RGD PMID:15158362 RGD:2316739 NCBI chr28:1,651,698...1,767,210
Ensembl chr28:1,652,670...1,766,895
JBrowse link
G PCNA proliferating cell nuclear antigen IEA Ensembl GO_REF:0000107 NCBI chr24:16,478,774...16,485,992
Ensembl chr24:16,478,769...16,484,992
JBrowse link
G RNF168 ring finger protein 168 IEA UniProtKB
Ensembl
GO_REF:0000104, GO_REF:0000107 NCBI chr33:29,542,209...29,575,127
Ensembl chr33:29,539,182...29,628,248
JBrowse link
G RNF8 ring finger protein 8 IEA UniProt GO_REF:0000104 NCBI chr12:6,380,365...6,415,407
Ensembl chr12:6,292,459...6,415,382
JBrowse link
G RPS3 ribosomal protein S3 ISO (PMID:23911537) UniProtKB PMID:23911537 NCBI chr21:23,180,515...23,187,034
Ensembl chr21:23,180,515...23,187,034
JBrowse link
G SIRT1 sirtuin 1 ISO (PMID:19934257) UniProtKB PMID:19934257 NCBI chr 4:19,188,616...19,220,031
Ensembl chr 4:19,188,675...19,218,279
JBrowse link
G SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 ISO (PMID:24790221) UniProtKB PMID:24790221 NCBI chr 7:69,359,286...69,505,067
Ensembl chr 7:69,358,447...69,621,067
JBrowse link
G TBC1D22B TBC1 domain family member 22B IEA UniProt GO_REF:0000104 NCBI chr12:6,289,704...6,367,643
Ensembl chr12:6,292,459...6,415,382
JBrowse link
G TIGAR TP53 induced glycolysis regulatory phosphatase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr27:40,521,751...40,549,304
Ensembl chr27:40,523,314...40,549,332
JBrowse link
G TMEM161A transmembrane protein 161A IEA Ensembl GO_REF:0000107 NCBI chr20:44,021,722...44,037,985
Ensembl chr20:44,020,919...44,037,938
JBrowse link
G TRIM28 tripartite motif containing 28 ISO (PMID:17178852) UniProtKB PMID:17178852 NCBI chr 1:99,408,920...99,415,432
Ensembl chr 1:99,408,925...99,415,146
JBrowse link
G UBE2N ubiquitin conjugating enzyme E2 N ISO (PMID:16129784) HGNC PMID:16129784 NCBI chr15:33,651,478...33,687,049 JBrowse link
G UBE2V2 ubiquitin conjugating enzyme E2 V2 ISO RGD PMID:12750002 RGD:1299567 NCBI chr29:307,502...359,058
Ensembl chr29:307,525...357,962
JBrowse link
G UIMC1 ubiquitin interaction motif containing 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:36,339,711...36,467,035
Ensembl chr 4:36,354,922...36,466,880
JBrowse link
G WRAP53 WD repeat containing antisense to TP53 ISO (PMID:25512560) UniProtKB PMID:25512560 NCBI chr 5:32,574,153...32,586,222
Ensembl chr 5:32,574,134...32,594,333
JBrowse link
positive regulation of DNA repair by transcription from RNA polymerase II promoter term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GTF2I general transcription factor IIi IEA Ensembl GO_REF:0000107 NCBI chr 6:5,726,652...5,840,740
Ensembl chr 6:5,727,665...5,811,965
JBrowse link
G PRRX1 paired related homeobox 1 IEA Ensembl GO_REF:0000107 NCBI chr 7:28,065,570...28,138,734
Ensembl chr 7:28,068,711...28,138,787
JBrowse link
positive regulation of double-strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDX11 DEAD/H-box helicase 11 IEA Ensembl GO_REF:0000107 NCBI chr27:42,067,845...42,102,699
Ensembl chr27:42,067,898...42,105,870
JBrowse link
G FMN2 formin 2 ISO (PMID:26287480) UniProt PMID:26287480 NCBI chr 7:31,657,371...32,024,777
Ensembl chr 7:31,697,245...32,023,472
JBrowse link
G FOXM1 forkhead box M1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr27:41,894,605...41,905,656
Ensembl chr27:41,894,672...41,905,663
JBrowse link
G MGMT O-6-methylguanine-DNA methyltransferase ISO (PMID:24147153) BHF-UCL PMID:24147153 NCBI chr28:38,204,611...38,427,482
Ensembl chr28:38,204,610...38,427,380
JBrowse link
G NUDT16 nudix hydrolase 16 ISO (PMID:20385596) UniProtKB PMID:20385596 NCBI chr23:28,498,730...28,500,998
Ensembl chr23:28,498,652...28,499,998
JBrowse link
G SLF1 SMC5-SMC6 complex localization factor 1 IEA Ensembl GO_REF:0000107 NCBI chr 3:14,792,851...14,877,024
Ensembl chr 3:14,793,363...14,869,755
JBrowse link
G SLF2 SMC5-SMC6 complex localization factor 2 IEA Ensembl GO_REF:0000107 NCBI chr28:13,595,194...13,656,644
Ensembl chr28:13,595,831...13,651,638
JBrowse link
G SPIDR scaffold protein involved in DNA repair IEA Ensembl GO_REF:0000107 NCBI chr35:79,188...503,687
Ensembl chr35:79,185...514,797
JBrowse link
G SPIRE1 spire type actin nucleation factor 1 ISO (PMID:26287480) UniProt PMID:26287480 NCBI chr 7:77,860,287...78,062,894
Ensembl chr 7:77,854,875...78,092,466
JBrowse link
G SPIRE2 spire type actin nucleation factor 2 IEA Ensembl GO_REF:0000107 NCBI chr 5:63,732,855...63,765,162
Ensembl chr 5:63,732,842...63,753,419
JBrowse link
G TIMELESS timeless circadian regulator ISO (PMID:23797032) UniProtKB PMID:23797032 NCBI chr10:671,829...701,152
Ensembl chr10:671,269...687,016
JBrowse link
G WRAP53 WD repeat containing antisense to TP53 ISO (PMID:27715493) UniProtKB PMID:27715493 NCBI chr 5:32,574,153...32,586,222
Ensembl chr 5:32,574,134...32,594,333
JBrowse link
G ZCWPW1 zinc finger CW-type and PWWP domain containing 1 ISO (MGI:MGI:6358520|PMID:31453335) ARUK-UCL PMID:31453335 MGI:MGI:6358520 NCBI chr 6:9,239,626...9,314,972
Ensembl chr 6:9,246,264...9,271,330
JBrowse link
positive regulation of double-strand break repair via homologous recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTR2 actin related protein 2 IEA Ensembl GO_REF:0000107 NCBI chr10:64,696,068...64,733,027
Ensembl chr10:64,696,111...64,730,553
JBrowse link
G ARID2 AT-rich interaction domain 2 IEA Ensembl GO_REF:0000107 NCBI chr27:8,411,092...8,579,735
Ensembl chr27:8,412,377...8,579,882
JBrowse link
G BLM BLM RecQ like helicase ISO (MGI:MGI:5648586|PMID:25520194) MGI PMID:25520194 MGI:MGI:5648586 NCBI chr 3:53,408,120...53,506,728
Ensembl chr 3:53,408,217...53,473,146
JBrowse link
G ERCC6 ERCC excision repair 6, chromatin remodeling factor IEA Ensembl GO_REF:0000107 NCBI chr28:1,358,383...1,432,276
Ensembl chr28:1,361,107...1,427,162
JBrowse link
G FANCB FA complementation group B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:10,690,826...11,140,838
Ensembl chr  X:11,095,200...11,141,029
JBrowse link
G FUS FUS RNA binding protein IEA Ensembl GO_REF:0000107 NCBI chr 6:17,059,904...17,071,227
Ensembl chr 6:17,060,061...17,071,178
JBrowse link
G MMS19 MMS19 homolog, cytosolic iron-sulfur assembly component IEA Ensembl GO_REF:0000107 NCBI chr28:10,749,327...10,783,846
Ensembl chr28:10,749,325...10,783,805
JBrowse link
G MRNIP MRN complex interacting protein ISO (PMID:27568553) UniProtKB PMID:27568553 NCBI chr11:1,834,148...1,859,601
Ensembl chr11:1,833,967...1,859,347
JBrowse link
G PARP1 poly(ADP-ribose) polymerase 1 IEA Ensembl GO_REF:0000107 NCBI chr 7:38,503,072...38,542,556
Ensembl chr 7:38,503,067...38,542,127
JBrowse link
G TIMELESS timeless circadian regulator IEA Ensembl GO_REF:0000107 NCBI chr10:671,829...701,152
Ensembl chr10:671,269...687,016
JBrowse link
G WAS WASP actin nucleation promoting factor IEA Ensembl GO_REF:0000107 NCBI chr  X:41,882,240...41,890,053
Ensembl chr  X:41,882,875...41,890,058
JBrowse link
G WRAP53 WD repeat containing antisense to TP53 ISO (PMID:25512560) UniProtKB PMID:25512560 NCBI chr 5:32,574,153...32,586,222
Ensembl chr 5:32,574,134...32,594,333
JBrowse link
positive regulation of double-strand break repair via nonhomologous end joining term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DTX3L deltex E3 ubiquitin ligase 3L IEA Ensembl GO_REF:0000107 NCBI chr33:25,676,686...25,684,270
Ensembl chr33:25,677,076...25,684,175
JBrowse link
G FH fumarate hydratase ISO (PMID:26237645) UniProt PMID:26237645 NCBI chr 7:32,900,250...32,927,436
Ensembl chr 7:32,901,586...32,927,412
JBrowse link
G KDM4D lysine demethylase 4D IEA Ensembl GO_REF:0000107 NCBI chr21:6,002,292...6,037,344
Ensembl chr21:5,987,723...6,004,783
JBrowse link
G KMT5B lysine methyltransferase 5B IEA Ensembl GO_REF:0000107 NCBI chr18:49,655,783...49,691,899
Ensembl chr18:49,637,610...49,827,034
JBrowse link
G KMT5C lysine methyltransferase 5C IEA Ensembl GO_REF:0000107 NCBI chr 1:102,334,687...102,342,090
Ensembl chr 1:102,333,543...102,342,118
JBrowse link
G MAD2L2 mitotic arrest deficient 2 like 2 IEA Ensembl GO_REF:0000107 NCBI chr 2:84,539,724...84,549,402
Ensembl chr 2:84,545,226...84,549,356
JBrowse link
G PARP3 poly(ADP-ribose) polymerase family member 3 IEA Ensembl GO_REF:0000107 NCBI chr20:37,767,336...37,774,269
Ensembl chr20:37,767,505...37,773,770
JBrowse link
G PARP9 poly(ADP-ribose) polymerase family member 9 IEA Ensembl GO_REF:0000107 NCBI chr33:25,643,439...25,676,979
Ensembl chr33:25,643,883...25,677,462
JBrowse link
G PNKP polynucleotide kinase 3'-phosphatase IEA Ensembl GO_REF:0000107 NCBI chr 1:106,695,649...106,707,229
Ensembl chr 1:106,694,589...106,702,150
JBrowse link
G PRKDC protein kinase, DNA-activated, catalytic subunit ISS
IEA
UniProt
Ensembl
GO_REF:0000024, GO_REF:0000107 NCBI chr29:24,904...243,926
Ensembl chr29:35,007...243,895
JBrowse link
G RIF1 replication timing regulatory factor 1 IEA Ensembl GO_REF:0000107 NCBI chr19:52,661,278...52,711,969
Ensembl chr19:52,661,155...52,709,279
JBrowse link
G SETMAR SET domain without mariner transposase fusion ISO (PMID:20620605), (PMID:21491884) UniProtKB PMID:20620605, PMID:21491884 NCBI chr20:13,214,241...13,224,020
Ensembl chr20:13,214,241...13,224,020
JBrowse link
G SHLD1 shieldin complex subunit 1 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr24:15,957,863...16,037,336
Ensembl chr24:15,957,852...16,038,008
JBrowse link
G SHLD2 shieldin complex subunit 2 IEA Ensembl GO_REF:0000107 NCBI chr 4:34,665,111...34,740,645
Ensembl chr 4:34,688,245...34,763,705
JBrowse link
G SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 ISO (PMID:25294876) UniProtKB PMID:25294876 NCBI chr 7:69,359,286...69,505,067
Ensembl chr 7:69,358,447...69,621,067
JBrowse link
G TOP2B DNA topoisomerase II beta ISO RGD PMID:22019940 RGD:13432143 NCBI chr23:18,159,521...18,206,413
Ensembl chr23:18,146,095...18,206,287
JBrowse link
G WRAP53 WD repeat containing antisense to TP53 ISO (PMID:25512560) UniProtKB PMID:25512560 NCBI chr 5:32,574,153...32,586,222
Ensembl chr 5:32,574,134...32,594,333
JBrowse link
positive regulation of mismatch repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HDAC10 histone deacetylase 10 IEA Ensembl GO_REF:0000107 NCBI chr10:16,996,307...17,001,365
Ensembl chr10:16,995,762...17,078,262
JBrowse link
G HMGB1 high mobility group box 1 IEA Ensembl GO_REF:0000107 NCBI chr25:9,431,223...9,558,167
Ensembl chr25:9,431,218...9,558,165
JBrowse link
G LOC484316 protein kinase C gamma type IEA Ensembl GO_REF:0000107 NCBI chr 1:103,495,013...103,512,465 JBrowse link
G PRKCG protein kinase C gamma IEA Ensembl GO_REF:0000107 NCBI chr 1:103,295,110...103,312,562 JBrowse link
positive regulation of single strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PARP1 poly(ADP-ribose) polymerase 1 IEA Ensembl GO_REF:0000107 NCBI chr 7:38,503,072...38,542,556
Ensembl chr 7:38,503,067...38,542,127
JBrowse link
G XRCC1 X-ray repair cross complementing 1 IEA Ensembl GO_REF:0000107 NCBI chr 1:111,548,719...111,571,816
Ensembl chr 1:111,548,719...111,571,816
JBrowse link
regulation of DNA double-strand break processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HELB DNA helicase B IEA Ensembl GO_REF:0000107 NCBI chr10:8,766,023...8,797,055
Ensembl chr10:8,765,617...8,798,092
JBrowse link
G WDR70 WD repeat domain 70 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:71,028,962...71,330,775
Ensembl chr 4:71,028,965...71,330,685
JBrowse link
regulation of double-strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DEK DEK proto-oncogene IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:17,014,802...17,045,308
Ensembl chr35:17,016,231...17,044,749
JBrowse link
G PML PML nuclear body scaffold IEA Ensembl GO_REF:0000107 NCBI chr30:37,232,337...37,278,434
Ensembl chr30:37,232,306...37,277,741
JBrowse link
G TRIP12 thyroid hormone receptor interactor 12 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr25:42,060,103...42,208,326
Ensembl chr25:42,060,991...42,208,054
JBrowse link
G UBR5 ubiquitin protein ligase E3 component n-recognin 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:3,887,408...4,023,364
Ensembl chr13:3,879,220...4,023,955
JBrowse link
regulation of double-strand break repair via homologous recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHEK1 checkpoint kinase 1 ISO (PMID:15665856) UniProtKB PMID:15665856 NCBI chr 5:8,878,511...8,910,626
Ensembl chr 5:8,879,147...8,907,669
JBrowse link
G FIGN fidgetin, microtubule severing factor IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr36:8,914,023...9,045,240
Ensembl chr36:8,920,224...8,922,977
JBrowse link
G FIGNL1 fidgetin like 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:1,788,063...1,792,900
Ensembl chr18:1,788,801...1,790,831
JBrowse link
G KDM1A lysine demethylase 1A IEA Ensembl GO_REF:0000107 NCBI chr 2:76,313,742...76,375,716
Ensembl chr 2:76,156,434...76,375,632
JBrowse link
G PPP4C protein phosphatase 4 catalytic subunit IEA Ensembl GO_REF:0000107 NCBI chr 6:18,085,048...18,092,861
Ensembl chr 6:18,085,116...18,092,854
JBrowse link
G PPP4R2 protein phosphatase 4 regulatory subunit 2 IEA Ensembl GO_REF:0000107 NCBI chr20:19,116,122...19,166,927
Ensembl chr20:19,118,124...19,167,264
JBrowse link
G RAD51 RAD51 recombinase ISS
IEA
UniProtKB
Ensembl
GO_REF:0000024, GO_REF:0000107 NCBI chr30:7,842,540...7,877,128
Ensembl chr30:7,842,540...7,877,606
JBrowse link
G RAD51AP1 RAD51 associated protein 1 IEA Ensembl GO_REF:0000107 NCBI chr27:40,303,935...40,341,666
Ensembl chr27:40,303,992...40,341,526
JBrowse link
G RPA2 replication protein A2 IEA Ensembl GO_REF:0000107 NCBI chr 2:72,463,951...72,479,864
Ensembl chr 2:72,419,459...72,479,227
JBrowse link
G RTEL1 regulator of telomere elongation helicase 1 IEA
IBA
(PMID:21873635) UniProt
GO_Central
PMID:21873635 GO_REF:0000104 NCBI chr24:47,219,977...47,248,791 JBrowse link
G SETD2 SET domain containing 2, histone lysine methyltransferase IEA Ensembl GO_REF:0000107 NCBI chr20:41,675,539...41,800,697
Ensembl chr20:41,675,599...41,800,612
JBrowse link
G SHLD2 shieldin complex subunit 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:34,665,111...34,740,645
Ensembl chr 4:34,688,245...34,763,705
JBrowse link
G SIRT6 sirtuin 6 IEA Ensembl GO_REF:0000107 NCBI chr20:55,412,989...55,424,944
Ensembl chr20:55,412,646...55,424,944
JBrowse link
G SPIDR scaffold protein involved in DNA repair IEA Ensembl GO_REF:0000107 NCBI chr35:79,188...503,687
Ensembl chr35:79,185...514,797
JBrowse link
G TERF2IP TERF2 interacting protein IEA Ensembl GO_REF:0000107 NCBI chr 5:75,164,410...75,172,959
Ensembl chr 5:75,165,191...75,172,838
JBrowse link
G TEX15 testis expressed 15, meiosis and synapsis associated IEA InterPro GO_REF:0000002 NCBI chr16:33,423,546...33,517,458
Ensembl chr16:33,423,876...33,515,452
JBrowse link
G USP51 ubiquitin specific peptidase 51 ISO (PMID:27083998) UniProtKB PMID:27083998 NCBI chr  X:47,199,583...47,203,909 JBrowse link
G ZNF365 zinc finger protein 365 IEA Ensembl GO_REF:0000107 NCBI chr 4:14,297,652...14,429,634
Ensembl chr 4:14,311,302...14,331,568
JBrowse link
regulation of double-strand break repair via nonhomologous end joining term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTR2 actin related protein 2 NOT ISO (PMID:29925947) UniProt PMID:29925947 NCBI chr10:64,696,068...64,733,027
Ensembl chr10:64,696,111...64,730,553
JBrowse link
G LOC100688177 protein DEK pseudogene ISO (MGI:MGI:5317387|PMID:21653549) MGI PMID:21653549 MGI:MGI:5317387 NCBI chr 3:10,279,204...10,280,935 JBrowse link
G MRNIP MRN complex interacting protein ISO (PMID:27568553) UniProtKB PMID:27568553 NCBI chr11:1,834,148...1,859,601
Ensembl chr11:1,833,967...1,859,347
JBrowse link
G NSD2 nuclear receptor binding SET domain protein 2 IEA Ensembl GO_REF:0000107 NCBI chr 3:62,164,888...62,228,006
Ensembl chr 3:62,167,939...62,228,035
JBrowse link
G POT1 protection of telomeres 1 IEA Ensembl GO_REF:0000107 NCBI chr14:10,987,385...11,067,473
Ensembl chr14:10,987,494...11,066,956
JBrowse link
G SIRT7 sirtuin 7 IEA Ensembl GO_REF:0000107 NCBI chr 9:377,141...383,355
Ensembl chr 9:376,445...442,919
JBrowse link
G USP51 ubiquitin specific peptidase 51 ISO (PMID:27083998) UniProtKB PMID:27083998 NCBI chr  X:47,199,583...47,203,909 JBrowse link
G WAS WASP actin nucleation promoting factor NOT ISO (PMID:29925947) UniProt PMID:29925947 NCBI chr  X:41,882,240...41,890,053
Ensembl chr  X:41,882,875...41,890,058
JBrowse link
regulation of mismatch repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AXIN2 axin 2 IEA Ensembl GO_REF:0000107 NCBI chr 9:14,559,476...14,588,950
Ensembl chr 9:14,559,388...14,588,530
JBrowse link
regulation of nucleotide-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CUL4A cullin 4A IEA Ensembl GO_REF:0000107 NCBI chr22:60,624,215...60,667,844
Ensembl chr22:60,624,241...60,666,616
JBrowse link
G HMGB1 high mobility group box 1 IEA Ensembl GO_REF:0000107 NCBI chr25:9,431,223...9,558,167
Ensembl chr25:9,431,218...9,558,165
JBrowse link
G KAT7 lysine acetyltransferase 7 IEA Ensembl GO_REF:0000107 NCBI chr 9:25,841,916...25,875,245
Ensembl chr 9:25,842,054...25,873,674
JBrowse link
G RAD52 RAD52 homolog, DNA repair protein IEA Ensembl GO_REF:0000107 NCBI chr27:42,915,334...43,032,293
Ensembl chr27:42,915,634...42,951,323
JBrowse link
regulation of single strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PARP1 poly(ADP-ribose) polymerase 1 ISO (MGI:MGI:5616996|PMID:25378300) MGI PMID:25378300 MGI:MGI:5616996 NCBI chr 7:38,503,072...38,542,556
Ensembl chr 7:38,503,067...38,542,127
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16162
    cellular process 15440
      regulation of cellular process 10481
        regulation of cellular response to stress 713
          regulation of response to DNA damage stimulus 229
            regulation of DNA repair 133
              negative regulation of DNA repair + 32
              positive regulation of DNA repair + 77
              regulation of base-excision repair + 2
              regulation of double-strand break repair + 86
              regulation of error-prone translesion synthesis + 0
              regulation of mismatch repair + 5
              regulation of nucleotide-excision repair + 4
              regulation of single strand break repair + 2
Path 2
Term Annotations click to browse term
  biological_process 16162
    metabolic process 10639
      cellular metabolic process 9631
        cellular aromatic compound metabolic process 5109
          nucleobase-containing compound metabolic process 4907
            nucleic acid metabolic process 4459
              DNA metabolic process 802
                DNA repair 436
                  regulation of DNA repair 133
                    negative regulation of DNA repair + 32
                    positive regulation of DNA repair + 77
                    regulation of base-excision repair + 2
                    regulation of double-strand break repair + 86
                    regulation of error-prone translesion synthesis + 0
                    regulation of mismatch repair + 5
                    regulation of nucleotide-excision repair + 4
                    regulation of single strand break repair + 2
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.