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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of DNA repair
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Accession:GO:0006282 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of DNA repair.


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regulation of DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDK9 cyclin dependent kinase 9 IEA Ensembl GO_REF:0000107 NCBI chr 1:268,277,083...268,280,493
Ensembl chr 1:268,275,891...268,281,057
JBrowse link
G IER3 immediate early response 3 ISO (MGI:MGI:5432078|PMID:20467439) MGI PMID:20467439 MGI:MGI:5432078 NCBI chr 7:23,265,560...23,266,905
Ensembl chr 7:23,265,562...23,267,042
JBrowse link
G RADX RPA1 related single stranded DNA binding protein, X-linked IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:87,025,603...87,103,503
Ensembl chr  X:87,025,600...87,103,501
JBrowse link
G SIRT7 sirtuin 7 ISO (PMID:27436229), (PMID:30944854) UniProt PMID:27436229, PMID:30944854 NCBI chr12:1,078,155...1,084,112
Ensembl chr12:1,077,868...1,084,119
JBrowse link
G SUV39H1 suppressor of variegation 3-9 homolog 1 ISO (MGI:MGI:5913114|PMID:23695662) MGI PMID:23695662 MGI:MGI:5913114 NCBI chr  X:42,797,309...42,811,457
Ensembl chr  X:42,797,828...42,814,003
JBrowse link
G USP1 ubiquitin specific peptidase 1 IEA InterPro
Ensembl
GO_REF:0000002, GO_REF:0000107 NCBI chr 6:149,971,471...149,985,946
Ensembl chr 6:149,970,915...149,985,506
JBrowse link
G WRNIP1 WRN helicase interacting protein 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:1,656,952...1,667,885
Ensembl chr 7:1,656,442...1,667,879
JBrowse link
negative regulation of DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RPS3 ribosomal protein S3 IEA Ensembl GO_REF:0000107 NCBI chr 9:9,612,939...9,630,404
Ensembl chr 9:9,616,456...9,630,413
JBrowse link
negative regulation of double-strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OTUB1 OTU deubiquitinase, ubiquitin aldehyde binding 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:8,088,528...8,095,555
Ensembl chr 2:8,087,828...8,095,609
JBrowse link
G OTUB2 OTU deubiquitinase, ubiquitin aldehyde binding 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:115,304,809...115,326,055
Ensembl chr 7:115,304,870...115,327,056
JBrowse link
G RNF169 ring finger protein 169 IEA Ensembl GO_REF:0000107 NCBI chr 9:9,069,776...9,177,367
Ensembl chr 9:9,069,192...9,173,915
JBrowse link
G TRIP12 thyroid hormone receptor interactor 12 IEA Ensembl GO_REF:0000107 NCBI chr15:130,784,567...130,940,497
Ensembl chr15:130,787,581...130,939,575
JBrowse link
G TWIST1 twist family bHLH transcription factor 1 ISO (PMID:17690110) BHF-UCL PMID:17690110 NCBI chr 9:88,286,911...88,290,131 JBrowse link
G UBR5 ubiquitin protein ligase E3 component n-recognin 5 IEA Ensembl GO_REF:0000107 NCBI chr 4:34,645,794...34,794,510
Ensembl chr 4:34,645,751...34,793,940
JBrowse link
negative regulation of double-strand break repair via homologous recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CGAS cyclic GMP-AMP synthase ISS
IBA
(PMID:21873635) UniProt
GO_Central
PMID:21873635 GO_REF:0000024 NCBI chr 1:92,483,253...92,500,376
Ensembl chr 1:92,483,327...92,504,327
JBrowse link
G FANCB FA complementation group B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:11,386,360...11,408,958
Ensembl chr  X:10,960,996...11,409,057
JBrowse link
G FBH1 F-box DNA helicase 1 IEA Ensembl GO_REF:0000107 NCBI chr10:65,060,714...65,108,975
Ensembl chr10:64,955,189...65,108,380
JBrowse link
G HELB DNA helicase B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:30,645,378...30,696,488
Ensembl chr 5:30,645,634...30,697,232
JBrowse link
G KLHL15 kelch like family member 15 IEA Ensembl GO_REF:0000107 NCBI chr  X:20,088,208...20,130,452
Ensembl chr  X:20,091,896...20,129,561
JBrowse link
G MAD2L2 mitotic arrest deficient 2 like 2 IEA Ensembl GO_REF:0000107 NCBI chr 6:71,773,680...71,779,192
Ensembl chr 6:71,773,681...71,779,183
JBrowse link
G MAGEF1 MAGE family member F1 IEA Ensembl GO_REF:0000107 NCBI chr13:122,600,984...122,602,700
Ensembl chr13:122,598,927...122,602,647
JBrowse link
G PARPBP PARP1 binding protein IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 5:82,018,857...82,091,946
Ensembl chr 5:81,878,891...82,091,373
JBrowse link
G POLQ DNA polymerase theta IEA Ensembl GO_REF:0000107 NCBI chr13:138,962,634...139,108,499
Ensembl chr13:138,978,463...139,108,502
JBrowse link
G RADX RPA1 related single stranded DNA binding protein, X-linked IEA Ensembl GO_REF:0000107 NCBI chr  X:87,025,603...87,103,503
Ensembl chr  X:87,025,600...87,103,501
JBrowse link
G RECQL5 RecQ like helicase 5 IEA Ensembl GO_REF:0000107 NCBI chr12:5,732,336...5,770,136
Ensembl chr12:5,732,348...5,770,136
JBrowse link
G RIF1 replication timing regulatory factor 1 IEA Ensembl GO_REF:0000107 NCBI chr15:769,518...832,036
Ensembl chr15:774,189...832,010
JBrowse link
G RMI2 RecQ mediated genome instability 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:31,807,717...31,814,869
Ensembl chr 3:31,808,015...31,814,843
JBrowse link
G SHLD1 shieldin complex subunit 1 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr17:14,610,723...14,706,082
Ensembl chr17:14,601,193...14,707,906
JBrowse link
G SHLD2 shieldin complex subunit 2 IEA Ensembl GO_REF:0000107 NCBI chr14:88,005,599...88,121,155
Ensembl chr14:88,005,590...88,121,383
JBrowse link
G SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 IEA Ensembl GO_REF:0000107 NCBI chr 6:103,809,732...103,986,057
Ensembl chr 6:103,808,066...103,986,144
JBrowse link
G TP53BP1 tumor protein p53 binding protein 1 IEA Ensembl GO_REF:0000107 NCBI chr 1:127,958,500...128,032,370
Ensembl chr 1:127,958,518...128,028,718
JBrowse link
G UBQLN4 ubiquilin 4 IEA Ensembl GO_REF:0000107 NCBI chr 4:93,976,386...93,994,830
Ensembl chr 4:93,976,431...93,994,830
JBrowse link
negative regulation of double-strand break repair via nonhomologous end joining term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AUNIP aurora kinase A and ninein interacting protein IEA Ensembl GO_REF:0000107 NCBI chr 6:83,276,977...83,316,642
Ensembl chr 6:83,272,771...83,316,419
JBrowse link
G CYREN cell cycle regulator of NHEJ ISO (PMID:28959974) UniProtKB PMID:28959974 NCBI chr18:14,127,724...14,133,486 JBrowse link
G ERCC6 ERCC excision repair 6, chromatin remodeling factor IEA Ensembl GO_REF:0000107 NCBI chr14:89,998,125...90,075,911
Ensembl chr14:90,002,024...90,075,898
JBrowse link
G HMGA2 high mobility group AT-hook 2 ISO (PMID:19549901) UniProtKB PMID:19549901 NCBI chr 5:30,188,521...30,329,635 JBrowse link
G HSF1 heat shock transcription factor 1 IEA Ensembl GO_REF:0000107 NCBI chr 4:463,531...486,483
Ensembl chr 4:461,559...486,473
JBrowse link
G NUDT16L1 nudix hydrolase 16 like 1 IEA Ensembl GO_REF:0000107 NCBI chr 3:37,684,206...37,694,653
Ensembl chr 3:37,684,207...37,748,039
JBrowse link
negative regulation of double-strand break repair via single-strand annealing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OGG1 8-oxoguanine DNA glycosylase ISO (PMID:19506022) MGI PMID:19506022 NCBI chr13:66,038,669...66,045,478 JBrowse link
positive regulation of base-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FAM168A family with sequence similarity 168 member A IEA Ensembl GO_REF:0000107 NCBI chr 9:7,852,347...8,072,011
Ensembl chr 9:7,852,352...8,071,733
JBrowse link
G RELT RELT TNF receptor IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:7,833,387...7,852,469
Ensembl chr 9:7,833,406...7,854,496
JBrowse link
G RPS3 ribosomal protein S3 IEA Ensembl GO_REF:0000107 NCBI chr 9:9,612,939...9,630,404
Ensembl chr 9:9,616,456...9,630,413
JBrowse link
positive regulation of DNA repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABRAXAS1 abraxas 1, BRCA1 A complex subunit IEA Ensembl GO_REF:0000107 NCBI chr 8:135,002,297...135,021,205
Ensembl chr 8:135,002,320...135,021,197
JBrowse link
G APBB1 amyloid beta precursor protein binding family B member 1 ISO (MGI:MGI:3698695|PMID:17121854)
PMID:19282473
UniProtKB
UniProt
PMID:17121854, PMID:19282473 MGI:MGI:3698695, RGD:8553580 NCBI chr 9:3,303,032...3,323,828
Ensembl chr 9:3,303,019...3,323,828
JBrowse link
G BABAM1 BRISC and BRCA1 A complex member 1 IEA InterPro
Ensembl
GO_REF:0000002, GO_REF:0000107 NCBI chr 2:60,398,170...60,407,742
Ensembl chr 2:60,398,191...60,407,557
JBrowse link
G BABAM2 BRISC and BRCA1 A complex member 2 IEA Ensembl GO_REF:0000107 NCBI chr 3:110,897,250...111,328,414
Ensembl chr 3:110,897,351...111,328,405
JBrowse link
G BRCA1 BRCA1 DNA repair associated IEA Ensembl GO_REF:0000107 NCBI chr12:19,788,087...19,854,515
Ensembl chr12:19,786,020...19,855,570
JBrowse link
G BRCC3 BRCA1/BRCA2-containing complex subunit 3 IEA Ensembl GO_REF:0000107 NCBI chr  X:125,383,392...125,439,082
Ensembl chr  X:125,383,414...125,439,082
JBrowse link
G CBX8 chromobox 8 ISO RGD PMID:23572236 RGD:9586727 NCBI chr12:2,562,419...2,565,035
Ensembl chr12:2,562,393...2,566,145
JBrowse link
G CEBPG CCAAT enhancer binding protein gamma IEA Ensembl GO_REF:0000107 NCBI chr 6:43,164,902...43,175,002
Ensembl chr 6:43,164,918...43,175,002
JBrowse link
G CMTR1 cap methyltransferase 1 IEA UniProt GO_REF:0000104 NCBI chr 7:33,000,499...33,063,739
Ensembl chr 7:32,931,786...33,063,739
JBrowse link
G DHX9 DExH-box helicase 9 IEA Ensembl GO_REF:0000107 NCBI chr 9:124,141,929...124,183,838
Ensembl chr 9:124,093,667...124,185,352
JBrowse link
G EGFR epidermal growth factor receptor IEA Ensembl GO_REF:0000107 NCBI chr 9:139,302,410...139,474,632
Ensembl chr 9:139,300,022...139,478,882
JBrowse link
G ERCC6 ERCC excision repair 6, chromatin remodeling factor ISO (PMID:22483866) UniProt PMID:22483866 NCBI chr14:89,998,125...90,075,911
Ensembl chr14:90,002,024...90,075,898
JBrowse link
G ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:39,704,602...39,770,330
Ensembl chr16:39,701,701...39,770,315
JBrowse link
G EYA1 EYA transcriptional coactivator and phosphatase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:63,970,939...64,328,107
Ensembl chr 4:63,970,511...64,328,105
JBrowse link
G EYA2 EYA transcriptional coactivator and phosphatase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:48,930,682...49,243,789
Ensembl chr17:48,966,814...49,243,747
JBrowse link
G EYA3 EYA transcriptional coactivator and phosphatase 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:85,095,409...85,185,856
Ensembl chr 6:85,095,409...85,185,799
JBrowse link
G EYA4 EYA transcriptional coactivator and phosphatase 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:30,260,784...30,575,593
Ensembl chr 1:30,261,909...30,575,559
JBrowse link
G FGF10 fibroblast growth factor 10 IEA Ensembl GO_REF:0000107 NCBI chr16:28,695,465...28,779,953
Ensembl chr16:28,695,469...28,777,541
JBrowse link
G MGMT O-6-methylguanine-DNA methyltransferase ISO RGD PMID:1945835 RGD:729332 NCBI chr14:138,502,005...138,771,543
Ensembl chr14:138,499,161...138,779,938
JBrowse link
G NPAS2 neuronal PAS domain protein 2 IEA Ensembl GO_REF:0000107 NCBI chr 3:53,298,805...53,490,375
Ensembl chr 3:53,298,863...53,438,910
JBrowse link
G PARG poly(ADP-ribose) glycohydrolase ISO RGD PMID:15158362 RGD:2316739 NCBI chr14:90,338,599...90,481,015
Ensembl chr14:90,338,503...90,480,986
JBrowse link
G PCNA proliferating cell nuclear antigen IEA Ensembl GO_REF:0000107 NCBI chr17:14,137,746...14,142,584
Ensembl chr17:14,125,814...14,185,276
JBrowse link
G RNF168 ring finger protein 168 IEA UniProt GO_REF:0000104 NCBI chr13:133,625,534...133,659,253 JBrowse link
G RNF8 ring finger protein 8 IEA UniProt GO_REF:0000104 NCBI chr 7:32,931,786...32,969,536
Ensembl chr 7:32,931,786...33,063,739
JBrowse link
G RPS3 ribosomal protein S3 ISO (PMID:23911537) UniProtKB PMID:23911537 NCBI chr 9:9,612,939...9,630,404
Ensembl chr 9:9,616,456...9,630,413
JBrowse link
G SIRT1 sirtuin 1 IEA Ensembl GO_REF:0000107 NCBI chr14:71,091,167...71,126,351
Ensembl chr14:71,091,157...71,123,299
JBrowse link
G SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 ISO (PMID:24790221) UniProtKB PMID:24790221 NCBI chr 6:103,809,732...103,986,057
Ensembl chr 6:103,808,066...103,986,144
JBrowse link
G TIGAR TP53 induced glycolysis regulatory phosphatase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:66,044,679...66,067,571
Ensembl chr 5:66,044,686...66,067,377
JBrowse link
G TMEM161A transmembrane protein 161A IEA Ensembl GO_REF:0000107 NCBI chr 2:58,728,738...58,744,939
Ensembl chr 2:58,728,813...58,744,937
JBrowse link
G TRIM28 tripartite motif containing 28 IEA Ensembl GO_REF:0000107 NCBI chr 6:63,094,382...63,101,532
Ensembl chr 6:63,094,648...63,101,532
JBrowse link
G UBE2N ubiquitin conjugating enzyme E2 N ISO (PMID:16129784) HGNC PMID:16129784 NCBI chr 5:89,673,306...89,716,345 JBrowse link
G UBE2V2 ubiquitin conjugating enzyme E2 V2 ISO RGD PMID:12750002 RGD:1299567 NCBI chr 4:79,621,343...79,652,502
Ensembl chr 4:79,419,358...79,652,471
JBrowse link
G UIMC1 ubiquitin interaction motif containing 1 ISS
IEA
IBA
(PMID:21873635) UniProt
Ensembl
GO_Central
PMID:21873635 GO_REF:0000024, GO_REF:0000107 NCBI chr 2:80,895,631...81,040,712
Ensembl chr 2:80,919,244...81,035,711
JBrowse link
G WRAP53 WD repeat containing antisense to TP53 ISO (PMID:25512560) UniProtKB PMID:25512560 NCBI chr12:52,954,674...52,968,371
Ensembl chr12:52,954,669...52,974,741
JBrowse link
positive regulation of DNA repair by transcription from RNA polymerase II promoter term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GTF2I general transcription factor IIi IEA Ensembl GO_REF:0000107 NCBI chr 3:11,656,928...11,811,426
Ensembl chr 3:11,671,575...11,811,423
JBrowse link
G PRRX1 paired related homeobox 1 IEA Ensembl GO_REF:0000107 NCBI chr 4:80,427,682...80,502,689
Ensembl chr 4:80,427,685...80,501,646
JBrowse link
positive regulation of double-strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDX11 DEAD/H-box helicase 11 IEA Ensembl GO_REF:0000107 NCBI chr 5:67,359,399...67,395,739
Ensembl chr 5:67,321,132...67,397,111
JBrowse link
G FMN2 formin 2 ISO (PMID:26287480) UniProt PMID:26287480
G FOXM1 forkhead box M1 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 5:67,246,219...67,263,215
Ensembl chr 5:67,245,694...67,263,211
Ensembl chr 5:67,245,694...67,263,211
JBrowse link
G LOC110256637 SMC5-SMC6 complex localization factor protein 2 IEA Ensembl GO_REF:0000107 NCBI chr14:111,996,781...112,049,309
Ensembl chr14:111,996,760...112,068,251
JBrowse link
G MGMT O-6-methylguanine-DNA methyltransferase ISO (PMID:24147153) BHF-UCL PMID:24147153 NCBI chr14:138,502,005...138,771,543
Ensembl chr14:138,499,161...138,779,938
JBrowse link
G NUDT16 nudix hydrolase 16 IEA Ensembl GO_REF:0000107 NCBI chr13:1,125,180...1,128,036
Ensembl chr13:1,122,541...1,128,041
JBrowse link
G SLF1 SMC5-SMC6 complex localization factor 1 IEA Ensembl
InterPro
GO_REF:0000002, GO_REF:0000107 NCBI chr 2:101,286,744...101,375,612
Ensembl chr 2:101,313,091...101,375,607
JBrowse link
G SPIDR scaffold protein involved in DNA repair IEA Ensembl GO_REF:0000107 NCBI chr 4:79,874,937...80,190,744
Ensembl chr 4:79,874,828...80,190,655
JBrowse link
G SPIRE1 spire type actin nucleation factor 1 IEA Ensembl GO_REF:0000107 NCBI chr 6:96,934,023...97,114,591
Ensembl chr 6:96,934,265...97,114,588
JBrowse link
G SPIRE2 spire type actin nucleation factor 2 IEA Ensembl GO_REF:0000107 NCBI chr 6:211,480...246,109
Ensembl chr 6:211,487...243,636
JBrowse link
G WRAP53 WD repeat containing antisense to TP53 ISO (PMID:27715493) UniProtKB PMID:27715493 NCBI chr12:52,954,674...52,968,371
Ensembl chr12:52,954,669...52,974,741
JBrowse link
G ZCWPW1 zinc finger CW-type and PWWP domain containing 1 ISO (MGI:MGI:6358520|PMID:31453335) ARUK-UCL PMID:31453335 MGI:MGI:6358520 NCBI chr 3:8,318,683...8,356,195
Ensembl chr 3:8,323,191...8,358,487
JBrowse link
positive regulation of double-strand break repair via homologous recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTR2 actin related protein 2 IEA Ensembl GO_REF:0000107 NCBI chr 3:76,691,275...76,729,269
Ensembl chr 3:76,691,275...76,729,210
JBrowse link
G ARID2 AT-rich interaction domain 2 IEA Ensembl GO_REF:0000107 NCBI chr 5:76,637,385...76,800,155
Ensembl chr 5:76,637,202...76,847,316
JBrowse link
G BLM BLM RecQ like helicase ISO (MGI:MGI:5648586|PMID:25520194) MGI PMID:25520194 MGI:MGI:5648586 NCBI chr 7:53,317,515...53,412,649
Ensembl chr 7:53,317,540...53,412,647
JBrowse link
G ERCC6 ERCC excision repair 6, chromatin remodeling factor IEA Ensembl GO_REF:0000107 NCBI chr14:89,998,125...90,075,911
Ensembl chr14:90,002,024...90,075,898
JBrowse link
G FANCB FA complementation group B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:11,386,360...11,408,958
Ensembl chr  X:10,960,996...11,409,057
JBrowse link
G FUS FUS RNA binding protein IEA Ensembl GO_REF:0000107 NCBI chr 3:17,314,936...17,326,663
Ensembl chr 3:17,314,332...17,326,637
JBrowse link
G MMS19 MMS19 homolog, cytosolic iron-sulfur assembly component IEA Ensembl GO_REF:0000107 NCBI chr14:108,853,038...108,886,587
Ensembl chr14:108,853,022...108,886,558
JBrowse link
G MRNIP MRN complex interacting protein ISO (PMID:27568553) UniProtKB PMID:27568553 NCBI chr 2:78,730,611...78,753,152 JBrowse link
G PARP1 poly(ADP-ribose) polymerase 1 IEA Ensembl GO_REF:0000107 NCBI chr10:14,203,157...14,241,164
Ensembl chr10:14,203,159...14,241,197
JBrowse link
G TIMELESS timeless circadian regulator IEA Ensembl GO_REF:0000107 Ensembl chr 5:21,759,474...21,787,521 JBrowse link
G WAS WASP actin nucleation promoting factor IEA Ensembl GO_REF:0000107 NCBI chr  X:42,774,597...42,793,055
Ensembl chr  X:42,774,588...42,793,055
JBrowse link
G WRAP53 WD repeat containing antisense to TP53 IEA Ensembl GO_REF:0000107 NCBI chr12:52,954,674...52,968,371
Ensembl chr12:52,954,669...52,974,741
JBrowse link
positive regulation of double-strand break repair via nonhomologous end joining term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DTX3L deltex E3 ubiquitin ligase 3L IEA Ensembl GO_REF:0000107 NCBI chr13:137,950,266...137,961,381
Ensembl chr13:137,950,272...137,961,343
JBrowse link
G FH fumarate hydratase ISS UniProt GO_REF:0000024 NCBI chr10:12,404,143...12,431,843
Ensembl chr10:12,404,176...12,431,801
JBrowse link
G KMT5B lysine methyltransferase 5B IEA Ensembl GO_REF:0000107 NCBI chr 2:4,710,510...4,768,237
Ensembl chr 2:4,710,769...4,766,005
JBrowse link
G KMT5C lysine methyltransferase 5C IEA Ensembl GO_REF:0000107 NCBI chr 6:59,517,058...59,524,551
Ensembl chr 6:59,517,058...59,525,434
JBrowse link
G LOC100514009 histone-lysine N-methyltransferase SETMAR ISO (PMID:20620605), (PMID:21491884) UniProtKB PMID:20620605, PMID:21491884 NCBI chr13:60,914,412...60,933,064 JBrowse link
G LOC100627380 lysine-specific demethylase 4D-like ISO (PMID:24550317) MGI PMID:24550317 NCBI chr 9:27,083,348...27,085,693 JBrowse link
G MAD2L2 mitotic arrest deficient 2 like 2 IEA Ensembl GO_REF:0000107 NCBI chr 6:71,773,680...71,779,192
Ensembl chr 6:71,773,681...71,779,183
JBrowse link
G PARP3 poly(ADP-ribose) polymerase family member 3 IEA Ensembl GO_REF:0000107 NCBI chr13:34,075,807...34,084,384
Ensembl chr13:34,075,801...34,085,210
JBrowse link
G PARP9 poly(ADP-ribose) polymerase family member 9 IEA Ensembl GO_REF:0000107 NCBI chr13:137,960,987...138,000,862
Ensembl chr13:137,961,357...138,002,024
JBrowse link
G PNKP polynucleotide kinase 3'-phosphatase IEA Ensembl GO_REF:0000107 NCBI chr 6:54,870,359...54,880,814
Ensembl chr 6:54,870,361...54,880,807
JBrowse link
G PRKDC protein kinase, DNA-activated, catalytic subunit IEA Ensembl GO_REF:0000107 NCBI chr 4:79,687,375...79,850,146
Ensembl chr 4:79,687,359...79,847,281
JBrowse link
G RIF1 replication timing regulatory factor 1 IEA Ensembl GO_REF:0000107 NCBI chr15:769,518...832,036
Ensembl chr15:774,189...832,010
JBrowse link
G SHLD1 shieldin complex subunit 1 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr17:14,610,723...14,706,082
Ensembl chr17:14,601,193...14,707,906
JBrowse link
G SHLD2 shieldin complex subunit 2 IEA Ensembl GO_REF:0000107 NCBI chr14:88,005,599...88,121,155
Ensembl chr14:88,005,590...88,121,383
JBrowse link
G SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 IEA Ensembl GO_REF:0000107 NCBI chr 6:103,809,732...103,986,057
Ensembl chr 6:103,808,066...103,986,144
JBrowse link
G TOP2B DNA topoisomerase II beta ISO RGD PMID:22019940 RGD:13432143 NCBI chr13:12,507,738...12,575,042
Ensembl chr13:12,507,138...12,575,583
JBrowse link
G WRAP53 WD repeat containing antisense to TP53 IEA Ensembl GO_REF:0000107 NCBI chr12:52,954,674...52,968,371
Ensembl chr12:52,954,669...52,974,741
JBrowse link
positive regulation of mismatch repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HDAC10 histone deacetylase 10 IEA Ensembl GO_REF:0000107 NCBI chr 5:439,142...445,337
Ensembl chr 5:439,805...445,340
JBrowse link
G HMGB1 high mobility group box 1 ISO (PMID:15014079) UniProtKB PMID:15014079 NCBI chr11:7,195,556...7,321,071 JBrowse link
G PRKCG protein kinase C gamma IEA Ensembl GO_REF:0000107 NCBI chr 6:56,213,479...56,235,683
Ensembl chr 6:56,213,483...56,234,656
JBrowse link
positive regulation of single strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PARP1 poly(ADP-ribose) polymerase 1 IEA Ensembl GO_REF:0000107 NCBI chr10:14,203,157...14,241,164
Ensembl chr10:14,203,159...14,241,197
JBrowse link
G XRCC1 X-ray repair cross complementing 1 IEA Ensembl GO_REF:0000107 NCBI chr 6:50,403,691...50,425,730
Ensembl chr 6:50,403,686...50,425,710
JBrowse link
regulation of DNA double-strand break processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HELB DNA helicase B IEA Ensembl GO_REF:0000107 NCBI chr 5:30,645,378...30,696,488
Ensembl chr 5:30,645,634...30,697,232
JBrowse link
G WDR70 WD repeat domain 70 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:22,599,904...22,891,927
Ensembl chr16:22,599,936...22,978,858
JBrowse link
regulation of double-strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DEK DEK proto-oncogene IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:13,901,562...13,935,477
Ensembl chr 7:13,872,775...13,935,173
JBrowse link
G PML PML nuclear body scaffold IEA Ensembl GO_REF:0000107 NCBI chr 7:59,405,044...59,450,155
Ensembl chr 7:59,405,048...59,450,150
JBrowse link
regulation of double-strand break repair via homologous recombination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHEK1 checkpoint kinase 1 ISO (PMID:15665856) UniProtKB PMID:15665856 NCBI chr 9:52,759,224...52,790,878
Ensembl chr 9:52,726,885...52,790,706
JBrowse link
G FIGN fidgetin, microtubule severing factor IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:70,255,270...70,394,095
Ensembl chr15:70,262,091...70,394,096
JBrowse link
G FIGNL1 fidgetin like 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:136,484,217...136,488,262
Ensembl chr 9:136,484,216...136,488,250
JBrowse link
G KDM1A lysine demethylase 1A IEA Ensembl GO_REF:0000107 NCBI chr 6:80,903,407...80,971,875
Ensembl chr 6:80,903,496...80,971,595
JBrowse link
G PPP4C protein phosphatase 4 catalytic subunit IEA Ensembl GO_REF:0000107 NCBI chr 3:18,262,817...18,271,588
Ensembl chr 3:18,262,823...18,271,586
JBrowse link
G PPP4R2 protein phosphatase 4 regulatory subunit 2 IEA Ensembl GO_REF:0000107 NCBI chr13:54,324,978...54,378,277
Ensembl chr13:54,324,997...54,378,277
JBrowse link
G RAD51 RAD51 recombinase IEA Ensembl GO_REF:0000107 NCBI chr 1:130,592,414...130,640,326
Ensembl chr 1:130,586,647...130,640,136
JBrowse link
G RAD51AP1 RAD51 associated protein 1 IEA Ensembl GO_REF:0000107 NCBI chr 5:65,872,277...65,897,210
Ensembl chr 5:65,872,281...65,897,215
JBrowse link
G RPA2 replication protein A2 IEA Ensembl GO_REF:0000107 NCBI chr 6:85,032,604...85,045,899
Ensembl chr 6:85,031,578...85,045,916
JBrowse link
G RTEL1 regulator of telomere elongation helicase 1 IEA
IBA
(PMID:21873635) UniProt
GO_Central
PMID:21873635 GO_REF:0000104 NCBI chr17:62,611,844...62,636,628 JBrowse link
G SETD2 SET domain containing 2, histone lysine methyltransferase IEA Ensembl GO_REF:0000107 NCBI chr13:29,884,708...29,996,285
Ensembl chr13:29,884,712...29,996,360
JBrowse link
G SHLD2 shieldin complex subunit 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:88,005,599...88,121,155
Ensembl chr14:88,005,590...88,121,383
JBrowse link
G SIRT6 sirtuin 6 IEA Ensembl GO_REF:0000107 NCBI chr 2:74,568,539...74,577,774
Ensembl chr 2:74,568,436...74,577,772
JBrowse link
G SPIDR scaffold protein involved in DNA repair IEA Ensembl GO_REF:0000107 NCBI chr 4:79,874,937...80,190,744
Ensembl chr 4:79,874,828...80,190,655
JBrowse link
G TERF2IP TERF2 interacting protein IEA Ensembl GO_REF:0000107 NCBI chr 6:12,047,409...12,057,451
Ensembl chr 6:12,014,243...12,057,445
JBrowse link
G TEX15 testis expressed 15, meiosis and synapsis associated ISO (MGI:MGI:3794139|PMID:18283110) MGI PMID:18283110 MGI:MGI:3794139 NCBI chr15:54,210,139...54,277,609 JBrowse link
G TRAPPC13 trafficking protein particle complex 13 IEA InterPro GO_REF:0000002 NCBI chr16:44,146,574...44,186,346
Ensembl chr16:44,146,604...44,184,667
JBrowse link
G USP51 ubiquitin specific peptidase 51 IEA Ensembl GO_REF:0000107 NCBI chr  X:48,047,658...48,051,941
Ensembl chr  X:48,048,223...48,050,355
JBrowse link
G ZNF365 zinc finger protein 365 IEA Ensembl GO_REF:0000107 NCBI chr14:65,861,398...65,888,341
Ensembl chr14:65,861,563...65,888,337
JBrowse link
regulation of double-strand break repair via nonhomologous end joining term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTR2 actin related protein 2 NOT ISO (PMID:29925947) UniProt PMID:29925947 NCBI chr 3:76,691,275...76,729,269
Ensembl chr 3:76,691,275...76,729,210
JBrowse link
G DEK DEK proto-oncogene IEA Ensembl GO_REF:0000107 NCBI chr 7:13,901,562...13,935,477
Ensembl chr 7:13,872,775...13,935,173
JBrowse link
G MRNIP MRN complex interacting protein ISO (PMID:27568553) UniProtKB PMID:27568553 NCBI chr 2:78,730,611...78,753,152 JBrowse link
G NSD2 nuclear receptor binding SET domain protein 2 IEA Ensembl GO_REF:0000107 NCBI chr 8:938,832...1,018,032
Ensembl chr 8:963,884...1,018,025
JBrowse link
G POT1 protection of telomeres 1 IEA Ensembl GO_REF:0000107 NCBI chr18:22,885,704...22,981,893
Ensembl chr18:22,827,029...22,981,890
JBrowse link
G SHLD1 shieldin complex subunit 1 IEA InterPro GO_REF:0000002 NCBI chr17:14,610,723...14,706,082
Ensembl chr17:14,601,193...14,707,906
JBrowse link
G SIRT7 sirtuin 7 IEA Ensembl GO_REF:0000107 NCBI chr12:1,078,155...1,084,112
Ensembl chr12:1,077,868...1,084,119
JBrowse link
G USP51 ubiquitin specific peptidase 51 IEA Ensembl GO_REF:0000107 NCBI chr  X:48,047,658...48,051,941
Ensembl chr  X:48,048,223...48,050,355
JBrowse link
G WAS WASP actin nucleation promoting factor NOT ISO (PMID:29925947) UniProt PMID:29925947 NCBI chr  X:42,774,597...42,793,055
Ensembl chr  X:42,774,588...42,793,055
JBrowse link
regulation of mismatch repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AXIN2 axin 2 IEA Ensembl GO_REF:0000107 NCBI chr12:12,311,293...12,343,207
Ensembl chr12:12,311,293...12,343,200
JBrowse link
regulation of nucleotide-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CUL4A cullin 4A IEA Ensembl GO_REF:0000107 NCBI chr11:78,557,030...78,588,964
Ensembl chr11:78,557,070...78,589,194
JBrowse link
G HMGB1 high mobility group box 1 ISO (MGI:MGI:3807115|PMID:18650382) UniProt PMID:18650382 MGI:MGI:3807115 NCBI chr11:7,195,556...7,321,071 JBrowse link
G KAT7 lysine acetyltransferase 7 IEA Ensembl GO_REF:0000107 NCBI chr12:25,970,966...26,005,006
Ensembl chr12:25,970,941...26,008,302
JBrowse link
G RAD52 RAD52 homolog, DNA repair protein IEA Ensembl GO_REF:0000107 NCBI chr 5:68,140,846...68,223,587
Ensembl chr 5:68,133,699...68,223,662
JBrowse link
regulation of single strand break repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PARP1 poly(ADP-ribose) polymerase 1 ISO (MGI:MGI:5616996|PMID:25378300) MGI PMID:25378300 MGI:MGI:5616996 NCBI chr10:14,203,157...14,241,164
Ensembl chr10:14,203,159...14,241,197
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16525
    cellular process 15757
      regulation of cellular process 10962
        regulation of cellular response to stress 715
          regulation of response to DNA damage stimulus 228
            regulation of DNA repair 133
              negative regulation of DNA repair + 32
              positive regulation of DNA repair + 77
              regulation of base-excision repair + 3
              regulation of double-strand break repair + 86
              regulation of error-prone translesion synthesis + 0
              regulation of mismatch repair + 4
              regulation of nucleotide-excision repair + 4
              regulation of single strand break repair + 2
Path 2
Term Annotations click to browse term
  biological_process 16525
    metabolic process 10566
      cellular metabolic process 9561
        cellular aromatic compound metabolic process 5101
          nucleobase-containing compound metabolic process 4902
            nucleic acid metabolic process 4482
              DNA metabolic process 815
                DNA repair 440
                  regulation of DNA repair 133
                    negative regulation of DNA repair + 32
                    positive regulation of DNA repair + 77
                    regulation of base-excision repair + 3
                    regulation of double-strand break repair + 86
                    regulation of error-prone translesion synthesis + 0
                    regulation of mismatch repair + 4
                    regulation of nucleotide-excision repair + 4
                    regulation of single strand break repair + 2
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.