Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:DNA packaging
go back to main search page
Accession:GO:0006323 term browser browse the term
Definition:Any process in which DNA and associated proteins are formed into a compact, orderly structure.
Synonyms:exact_synonym: DNA condensation;   DNA organisation;   DNA organization


show annotations for term's descendants       view all columns           Sort by:
 
DNA packaging term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hist1h2ba histone cluster 1 H2B family member a JBrowse link 17 43,423,111 43,423,580 RGD:1624291
apoptotic chromosome condensation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acin1 apoptotic chromatin condensation inducer 1 JBrowse link 15 33,288,369 33,333,256 RGD:1624291
RGD:1600115
G Dffb DNA fragmentation factor subunit beta JBrowse link 5 171,250,559 171,261,875 RGD:1624291
G Ern2 endoplasmic reticulum to nucleus signaling 2 JBrowse link 1 192,126,023 192,142,865 RGD:1624291
RGD:1600115
G Gper1 G protein-coupled estrogen receptor 1 JBrowse link 12 17,309,122 17,315,267 RGD:8553942
G Top2a DNA topoisomerase II alpha JBrowse link 10 86,901,467 86,930,947 RGD:1600115
RGD:13792537
RGD:1624291
CENP-A containing nucleosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cenpp centromere protein P JBrowse link 17 15,429,526 15,603,197 RGD:1600115
G Hjurp Holliday junction recognition protein JBrowse link 9 95,347,739 95,362,228 RGD:1624291
G Itgb3bp integrin subunit beta 3 binding protein JBrowse link 5 118,476,410 118,541,928 RGD:1600115
G LOC100362333 DNA-directed DNA polymerase epsilon 3 JBrowse link 7 118,816,053 118,816,725 RGD:13792537
G Mis18a MIS18 kinetochore protein A JBrowse link 11 30,880,231 30,893,262 RGD:1624291
RGD:13792537
G Nasp nuclear autoantigenic sperm protein JBrowse link 5 135,446,485 135,472,113 RGD:13792537
G Pole3 DNA polymerase epsilon 3, accessory subunit JBrowse link 5 78,380,813 78,384,047 RGD:13792537
chromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdan1 codanin 1 JBrowse link 3 112,660,839 112,676,596 RGD:1624291
RGD:1600115
G Chaf1a chromatin assembly factor 1 subunit A JBrowse link 9 11,000,869 11,027,631 RGD:1624291
G Chaf1b chromatin assembly factor 1 subunit B JBrowse link 11 34,101,248 34,121,371 RGD:1624291
G Gatad1 GATA zinc finger domain containing 1 JBrowse link 4 27,647,005 27,658,533 RGD:1624291
RGD:1600115
G Hmgb1 high mobility group box 1 JBrowse link 12 7,082,529 7,090,246 RGD:1624291
G Noc2l NOC2-like nucleolar associated transcriptional repressor JBrowse link 5 173,659,796 173,672,699 RGD:1624291
RGD:1600115
G Rbbp4 RB binding protein 4, chromatin remodeling factor JBrowse link 5 147,499,880 147,535,240 RGD:1624291
G Tp53 tumor protein p53 JBrowse link 10 56,186,299 56,198,449 RGD:1624291
chromosome condensation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Banf1 barrier to autointegration factor 1 JBrowse link 1 220,744,195 220,746,224 RGD:13792537
G Banf2 barrier to autointegration factor 2 JBrowse link 3 138,128,123 138,183,750 RGD:13792537
G Cdk1 cyclin-dependent kinase 1 JBrowse link 20 20,576,341 20,591,510 RGD:2301352
G H1f0 H1 histone family, member 0 JBrowse link 7 120,260,776 120,262,636 RGD:13792537
G H1f10 H1.10 linker histone JBrowse link 4 119,889,016 119,892,661 RGD:13792537
G H1f7 H1.7 linker histone JBrowse link 7 139,871,491 139,872,858 RGD:13792537
G H1f8 H1.8 linker histone JBrowse link 4 147,844,658 147,849,779 RGD:13792537
G Hils1 histone linker H1 domain, spermatid-specific 1 JBrowse link 10 82,775,691 82,776,487 RGD:1624291
RGD:13792537
G Hist1h1a histone cluster 1 H1 family member a JBrowse link 17 43,614,101 43,614,844 RGD:13792537
G Hist1h1b histone cluster 1 H1 family member b JBrowse link 17 44,766,313 44,766,981 RGD:13792537
G Hist1h1c histone cluster 1 H1 family member c JBrowse link 17 43,638,938 43,640,445 RGD:13792537
G Hist1h1d histone cluster 1 H1 family member d JBrowse link 17 43,797,711 43,798,450 RGD:13792537
G Hist1h1e histone cluster 1 H1 family member e JBrowse link 17 43,734,461 43,735,120 RGD:1300396
RGD:13792537
G Hist1h1t histone cluster 1 H1 family member t JBrowse link 17 43,675,190 43,675,934 RGD:13792537
G Prm1 protamine 1 JBrowse link 10 4,945,995 4,946,241 RGD:1600115
G Prm2 protamine 2 JBrowse link 10 4,950,484 4,950,920 RGD:1600115
G Prm3 protamine 3 JBrowse link 10 4,951,557 4,952,071 RGD:1600115
G Rock2 Rho-associated coiled-coil containing protein kinase 2 JBrowse link 6 42,180,864 42,289,910 RGD:633802
G Top2a DNA topoisomerase II alpha JBrowse link 10 86,901,467 86,930,947 RGD:1624291
DNA replication-dependent nucleosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Asf1a anti-silencing function 1A histone chaperone JBrowse link 20 34,894,419 34,909,265 RGD:1624291
RGD:1600115
G Asf1b anti-silencing function 1B histone chaperone JBrowse link 19 25,077,918 25,092,491 RGD:1624291
RGD:1600115
G Chaf1a chromatin assembly factor 1 subunit A JBrowse link 9 11,000,869 11,027,631 RGD:1624291
RGD:1600115
G Chaf1b chromatin assembly factor 1 subunit B JBrowse link 11 34,101,248 34,121,371 RGD:1624291
RGD:1600115
G Hat1 histone acetyltransferase 1 JBrowse link 3 58,022,395 58,070,067 RGD:1624291
RGD:1600115
G Hist1h2ail1 histone cluster 1 H2a family member I like 1 JBrowse link 17 43,814,773 43,815,183 RGD:1624291
G Hist1h3a histone cluster 1 H3 family member A JBrowse link 17 43,616,206 43,616,735 RGD:1624291
G Hist1h3b histone cluster 1, H3b JBrowse link 17 44,760,023 44,764,058 RGD:1624291
G Hist1h4b histone cluster 1 H4 family member B JBrowse link 17 44,522,144 44,526,587 RGD:1624291
G Hist2h4 histone cluster 2, H4 JBrowse link 2 198,411,955 198,412,350 RGD:1624291
G Hist2h4a histone cluster 2 H4 family member A JBrowse link 4 170,800,539 170,800,979 RGD:1624291
G Hist4h4 histone cluster 4, H4 JBrowse link 17 43,821,122 43,821,587 RGD:1624291
G Ipo4 importin 4 JBrowse link 15 34,304,425 34,314,552 RGD:1624291
RGD:1600115
G LOC100912290 histone H4-like JBrowse link 4 170,092,457 170,117,607 RGD:1624291
G LOC102548682 histone H4-like JBrowse link 17 43,616,218 43,673,659 RGD:1624291
G LOC102551184 histone H4-like JBrowse link 17 43,770,198 43,821,579 RGD:1624291
G LOC684819 similar to H3 histone, family 2 isoform 2 JBrowse link 17 43,794,397 43,795,493 RGD:1624291
G Nasp nuclear autoantigenic sperm protein JBrowse link 5 135,446,485 135,472,113 RGD:1624291
RGD:13792537
G Rbbp4 RB binding protein 4, chromatin remodeling factor JBrowse link 5 147,499,880 147,535,240 RGD:1624291
G RGD1562378 histone H4 variant H4-v.1 JBrowse link 4 170,762,862 170,763,962 RGD:1624291
DNA replication-independent nucleosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Asf1a anti-silencing function 1A histone chaperone JBrowse link 20 34,894,419 34,909,265 RGD:1624291
RGD:1600115
G Asf1b anti-silencing function 1B histone chaperone JBrowse link 19 25,077,918 25,092,491 RGD:1624291
RGD:1600115
G Atrx ATRX, chromatin remodeler JBrowse link X 76,820,110 76,979,155 RGD:1600115
RGD:1624291
G Cabin1 calcineurin binding protein 1 JBrowse link 20 13,836,032 13,963,003 RGD:1600115
RGD:13792537
RGD:1624291
G H3f3a H3 histone family member 3A JBrowse link 13 99,091,246 99,102,828 RGD:1624291
RGD:1600115
G H3f3b H3 histone family member 3B JBrowse link 10 104,573,666 104,575,890 RGD:1624291
RGD:1600115
G Hat1 histone acetyltransferase 1 JBrowse link 3 58,022,395 58,070,067 RGD:1624291
RGD:1600115
G Hira histone cell cycle regulator JBrowse link 11 86,168,196 86,276,430 RGD:1624291
RGD:13792537
G Hist1h4b histone cluster 1 H4 family member B JBrowse link 17 44,522,144 44,526,587 RGD:1624291
G Hist2h4 histone cluster 2, H4 JBrowse link 2 198,411,955 198,412,350 RGD:1624291
G Hist2h4a histone cluster 2 H4 family member A JBrowse link 4 170,800,539 170,800,979 RGD:1624291
G Hist4h4 histone cluster 4, H4 JBrowse link 17 43,821,122 43,821,587 RGD:1624291
G Ipo4 importin 4 JBrowse link 15 34,304,425 34,314,552 RGD:1624291
RGD:1600115
G LOC100911837 protein HIRA-like JBrowse link 11 85,802,536 85,896,680 RGD:13792537
G LOC100912290 histone H4-like JBrowse link 4 170,092,457 170,117,607 RGD:1624291
G LOC102548682 histone H4-like JBrowse link 17 43,616,218 43,673,659 RGD:1624291
G LOC102551184 histone H4-like JBrowse link 17 43,770,198 43,821,579 RGD:1624291
G Nasp nuclear autoantigenic sperm protein JBrowse link 5 135,446,485 135,472,113 RGD:1624291
G Rbbp4 RB binding protein 4, chromatin remodeling factor JBrowse link 5 147,499,880 147,535,240 RGD:1624291
G RGD1562378 histone H4 variant H4-v.1 JBrowse link 4 170,762,862 170,763,962 RGD:1624291
G Ubn1 ubinuclein 1 JBrowse link 10 10,690,224 10,725,655 RGD:1624291
RGD:1600115
heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bahd1 bromo adjacent homology domain containing 1 JBrowse link 3 110,708,790 110,732,038 RGD:1624291
RGD:1600115
G Hmga2 high mobility group AT-hook 2 JBrowse link 7 65,159,944 65,275,408 RGD:1624291
RGD:1600115
heterochromatin assembly involved in chromatin silencing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Baz2a bromodomain adjacent to zinc finger domain, 2A JBrowse link 7 2,518,267 2,548,840 RGD:1624291
G LOC100362333 DNA-directed DNA polymerase epsilon 3 JBrowse link 7 118,816,053 118,816,725 RGD:13792537
G Pole3 DNA polymerase epsilon 3, accessory subunit JBrowse link 5 78,380,813 78,384,047 RGD:13792537
histone H3-S10 phosphorylation involved in chromosome condensation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ccnb1 cyclin B1 JBrowse link 2 30,782,133 30,791,106 RGD:1624291
RGD:1600115
inactivation of X chromosome by heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Smchd1 structural maintenance of chromosomes flexible hinge domain containing 1 JBrowse link 9 119,675,750 119,818,620 RGD:1600115
RGD:1624291
meiotic chromosome condensation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ncapd2 non-SMC condensin I complex, subunit D2 JBrowse link 4 157,682,855 157,705,903 RGD:13792537
G Ncapd3 non-SMC condensin II complex, subunit D3 JBrowse link 8 28,075,629 28,145,024 RGD:13792537
G Ncaph non-SMC condensin I complex, subunit H JBrowse link 3 119,583,798 119,611,148 RGD:1600115
RGD:1624291
G Ncaph2 non-SMC condensin II complex, subunit H2 JBrowse link 7 130,326,597 130,343,655 RGD:1600115
RGD:13792537
RGD:1624291
G Smc2 structural maintenance of chromosomes 2 JBrowse link 5 68,717,509 68,764,080 RGD:1624291
RGD:1600115
G Smc4 structural maintenance of chromosomes 4 JBrowse link 2 165,600,934 165,629,415 RGD:1624291
RGD:1600115
mitotic chromosome condensation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Akap8 A-kinase anchoring protein 8 JBrowse link 7 14,323,298 14,339,953 RGD:1624291
RGD:1600115
G Akap8l A-kinase anchoring protein 8 like JBrowse link 7 14,340,168 14,369,835 RGD:1624291
RGD:1600115
G Cdca5 cell division cycle associated 5 JBrowse link 1 221,448,661 221,462,235 RGD:1624291
RGD:13792537
G Chmp1a charged multivesicular body protein 1A JBrowse link 19 56,001,724 56,010,004 RGD:1624291
RGD:1600115
G Ncapd2 non-SMC condensin I complex, subunit D2 JBrowse link 4 157,682,855 157,705,903 RGD:13792537
RGD:1624291
G Ncapd3 non-SMC condensin II complex, subunit D3 JBrowse link 8 28,075,629 28,145,024 RGD:13792537
RGD:1624291
G Ncapg non-SMC condensin I complex, subunit G JBrowse link 14 69,898,268 69,927,885 RGD:1624291
RGD:13792537
G Ncaph non-SMC condensin I complex, subunit H JBrowse link 3 119,583,798 119,611,148 RGD:13792537
RGD:1624291
G Ncaph2 non-SMC condensin II complex, subunit H2 JBrowse link 7 130,326,597 130,343,655 RGD:1600115
RGD:1624291
G Nipbl NIPBL, cohesin loading factor JBrowse link 2 57,508,830 57,676,197 RGD:13792537
G Nusap1 nucleolar and spindle associated protein 1 JBrowse link 3 111,422,267 111,452,600 RGD:1624291
RGD:13792537
G Phf13 PHD finger protein 13 JBrowse link 5 169,161,412 169,167,831 RGD:1624291
RGD:13792537
G Phf23 PHD finger protein 23 JBrowse link 10 56,605,078 56,609,236 RGD:13792537
G Smc2 structural maintenance of chromosomes 2 JBrowse link 5 68,717,509 68,764,080 RGD:1624291
RGD:1600115
G Smc4 structural maintenance of chromosomes 4 JBrowse link 2 165,600,934 165,629,415 RGD:1624291
RGD:1600115
G Ttn titin JBrowse link 3 63,565,160 63,837,815 RGD:1624291
negative regulation of chromosome condensation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G H3f3a H3 histone family member 3A JBrowse link 13 99,091,246 99,102,828 RGD:1624291
RGD:1600115
G H3f3b H3 histone family member 3B JBrowse link 10 104,573,666 104,575,890 RGD:1624291
RGD:1600115
nucleosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Anp32b acidic nuclear phosphoprotein 32 family member B JBrowse link 5 62,070,709 62,094,633 RGD:1600115
RGD:1624291
G Asf1a anti-silencing function 1A histone chaperone JBrowse link 20 34,894,419 34,909,265 RGD:1624291
G Asf1b anti-silencing function 1B histone chaperone JBrowse link 19 25,077,918 25,092,491 RGD:1624291
G Atrx ATRX, chromatin remodeler JBrowse link X 76,820,110 76,979,155 RGD:1624291
RGD:1600115
G Brd2 bromodomain containing 2 JBrowse link 20 3,910,555 3,921,074 RGD:1624291
RGD:1600115
G Chaf1a chromatin assembly factor 1 subunit A JBrowse link 9 11,000,869 11,027,631 RGD:13792537
G Chaf1b chromatin assembly factor 1 subunit B JBrowse link 11 34,101,248 34,121,371 RGD:13792537
G Daxx death-domain associated protein JBrowse link 20 5,480,103 5,485,962 RGD:1624291
RGD:13792537
RGD:1600115
G Grwd1 glutamate-rich WD repeat containing 1 JBrowse link 1 101,813,356 101,819,058 RGD:1600115
RGD:1624291
G H1f0 H1 histone family, member 0 JBrowse link 7 120,260,776 120,262,636 RGD:1600115
G H1f10 H1.10 linker histone JBrowse link 4 119,889,016 119,892,661 RGD:1600115
G H1f8 H1.8 linker histone JBrowse link 4 147,844,658 147,849,779 RGD:1600115
G H2afb3 H2A histone family, member B3 JBrowse link X 88,602,135 88,602,485 RGD:1624291
G H3f3a H3 histone family member 3A JBrowse link 13 99,091,246 99,102,828 RGD:1624291
G H3f3b H3 histone family member 3B JBrowse link 10 104,573,666 104,575,890 RGD:1624291
G Hils1 histone linker H1 domain, spermatid-specific 1 JBrowse link 10 82,775,691 82,776,487 RGD:1600115
G Hist1h1a histone cluster 1 H1 family member a JBrowse link 17 43,614,101 43,614,844 RGD:1600115
G Hist1h1b histone cluster 1 H1 family member b JBrowse link 17 44,766,313 44,766,981 RGD:1600115
G Hist1h1c histone cluster 1 H1 family member c JBrowse link 17 43,638,938 43,640,445 RGD:1600115
G Hist1h1d histone cluster 1 H1 family member d JBrowse link 17 43,797,711 43,798,450 RGD:1600115
G Hist1h1e histone cluster 1 H1 family member e JBrowse link 17 43,734,461 43,735,120 RGD:1600115
G Hist1h1t histone cluster 1 H1 family member t JBrowse link 17 43,675,190 43,675,934 RGD:1600115
G Hist1h2ail1 histone cluster 1 H2a family member I like 1 JBrowse link 17 43,814,773 43,815,183 RGD:1624291
G Hist1h2ao histone cluster 1, H2ao JBrowse link 17 44,744,534 44,744,931 RGD:13792537
G Hist1h2ba histone cluster 1 H2B family member a JBrowse link 17 43,423,111 43,423,580 RGD:1624291
RGD:13792537
RGD:1600115
G Hist1h2bc histone cluster 1, H2bc JBrowse link 17 44,736,184 44,738,393 RGD:13792537
G Hist1h2bd histone cluster 1 H2B family member D JBrowse link 17 44,833,924 44,834,305 RGD:13792537
G Hist1h2bg histone cluster 1, H2bg JBrowse link 17 43,817,316 43,817,717 RGD:13792537
G Hist1h2bh histone cluster 1 H2B family member h JBrowse link 17 44,519,815 44,520,269 RGD:13792537
G Hist1h2bk histone cluster 1 H2B family member k JBrowse link 17 44,527,421 44,527,801 RGD:13792537
G Hist1h2bl histone cluster 1 H2B family member l JBrowse link 17 44,748,445 44,748,910 RGD:13792537
G Hist1h2bo histone cluster 1 H2B family member o JBrowse link 17 44,756,557 44,758,170 RGD:13792537
G Hist1h2bq histone cluster 1 H2B family member Q JBrowse link 17 43,679,925 43,689,311 RGD:13792537
G Hist1h3a histone cluster 1 H3 family member A JBrowse link 17 43,616,206 43,616,735 RGD:1624291
G Hist1h3b histone cluster 1, H3b JBrowse link 17 44,760,023 44,764,058 RGD:1624291
G Hist1h4b histone cluster 1 H4 family member B JBrowse link 17 44,522,144 44,526,587 RGD:1624291
RGD:13792537
G Hist1h4m histone cluster 1, H4m RGD:13792537
G Hist2h2be histone cluster 2 H2B family member E JBrowse link 2 198,360,837 198,363,399 RGD:13792537
G Hist2h3c2 histone cluster 2 H3 family member C2 JBrowse link 2 198,390,024 198,418,075 RGD:1624291
G Hist2h4 histone cluster 2, H4 JBrowse link 2 198,411,955 198,412,350 RGD:1624291
RGD:13792537
G Hist2h4a histone cluster 2 H4 family member A JBrowse link 4 170,800,539 170,800,979 RGD:13792537
RGD:1624291
G Hist3h2ba histone cluster 3, H2ba JBrowse link 10 45,289,741 45,290,370 RGD:13792537
G Hist3h2bb histone cluster 3 H2B family member b JBrowse link 10 45,296,638 45,297,385 RGD:13792537
G Hist3h3 histone cluster 3, H3 JBrowse link 10 45,304,696 45,305,106 RGD:1624291
G Hist4h4 histone cluster 4, H4 JBrowse link 17 43,821,122 43,821,587 RGD:1624291
G Hmgb1 high mobility group box 1 JBrowse link 12 7,082,529 7,090,246 RGD:1624291
G Hmgb2 high mobility group box 2 JBrowse link 16 36,077,615 36,080,191 RGD:1624291
G Hp1bp3 heterochromatin protein 1, binding protein 3 JBrowse link 5 156,581,732 156,609,059 RGD:1600115
G Kat6a lysine acetyltransferase 6A JBrowse link 16 73,942,669 74,020,750 RGD:1600115
G LOC100364835 histone cluster 1, H2bd-like JBrowse link 17 43,764,654 43,765,101 RGD:13792537
G LOC100365043 histone cluster 1, H2bd-like JBrowse link 17 43,808,617 43,817,817 RGD:13792537
G LOC100910200 histone H2B type 1-C/E/G-like JBrowse link 17 44,792,982 44,793,896 RGD:13792537
G LOC100912290 histone H4-like JBrowse link 4 170,092,457 170,117,607 RGD:1624291
G LOC100912489 histone H4-like JBrowse link 4 170,144,871 170,145,311 RGD:13792537
G LOC100912564 histone H4-like JBrowse link 4 170,182,634 170,183,074 RGD:13792537
G LOC102548682 histone H4-like JBrowse link 17 43,616,218 43,673,659 RGD:1624291
G LOC102549061 histone H2B type 1-N-like JBrowse link 17 43,627,872 43,628,518 RGD:13792537
G LOC102551184 histone H4-like JBrowse link 17 43,770,198 43,821,579 RGD:1624291
G LOC108348112 bromodomain-containing protein 2 JBrowse link 20 5,262,742 5,269,337 RGD:1600115
G LOC684444 similar to HIStone family member (his-41) JBrowse link 2 29,247,748 29,248,259 RGD:13792537
G LOC684762 similar to CG31613-PA JBrowse link 17 43,776,018 43,776,779 RGD:1624291
G LOC684797 similar to Histone H2B 291B JBrowse link 17 43,778,481 43,778,990 RGD:13792537
G LOC684819 similar to H3 histone, family 2 isoform 2 JBrowse link 17 43,794,397 43,795,493 RGD:1624291
G Macroh2a1 macroH2A.1 histone JBrowse link 17 9,282,109 9,344,698 RGD:1600115
G Macroh2a2 macroH2A.2 histone JBrowse link 20 31,352,924 31,402,483 RGD:1600115
G Mcm2 minichromosome maintenance complex component 2 JBrowse link 4 120,825,699 120,840,221 RGD:1624291
RGD:1600115
G Naa60 N(alpha)-acetyltransferase 60, NatF catalytic subunit JBrowse link 10 11,881,635 11,902,139 RGD:1624291
RGD:1600115
G Nap1l1 nucleosome assembly protein 1-like 1 JBrowse link 7 54,213,305 54,237,880 RGD:1600115
G Nap1l3 nucleosome assembly protein 1-like 3 JBrowse link X 95,059,334 95,062,132 RGD:1600115
G Nap1l4 nucleosome assembly protein 1-like 4 JBrowse link 1 216,715,352 216,751,742 RGD:1600115
RGD:1624291
G Nap1l5 nucleosome assembly protein 1-like 5 JBrowse link 4 89,149,314 89,152,511 RGD:1600115
G Nasp nuclear autoantigenic sperm protein JBrowse link 5 135,446,485 135,472,113 RGD:1624291
G Npm1 nucleophosmin 1 JBrowse link 10 18,080,949 18,091,062 RGD:1624291
G Padi4 peptidyl arginine deiminase 4 JBrowse link 5 159,260,675 159,293,906 RGD:1624291
RGD:1600115
G Pkn3 protein kinase N3 JBrowse link 3 8,628,033 8,656,464 RGD:1600115
G RGD1562378 histone H4 variant H4-v.1 JBrowse link 4 170,762,862 170,763,962 RGD:1624291
RGD:13792537
G RGD1563307 similar to Set beta isoform JBrowse link 1 89,645,570 89,646,774 RGD:1600115
G Rsf1 remodeling and spacing factor 1 JBrowse link 1 162,549,222 162,671,962 RGD:1624291
RGD:1600115
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein JBrowse link 12 48,628,198 48,656,096 RGD:1624291
G Set SET nuclear proto-oncogene JBrowse link 19 58,420,635 58,422,153 RGD:1600115
G Shprh SNF2 histone linker PHD RING helicase JBrowse link 1 5,240,139 5,313,064 RGD:1600115
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 JBrowse link 19 30,936,703 30,969,454 RGD:1624291
G Smyd3 SET and MYND domain containing 3 JBrowse link 13 97,330,120 97,807,813 RGD:1624291
G Sox9 SRY-box transcription factor 9 JBrowse link 10 101,288,528 101,294,030 RGD:1624291
RGD:1600115
G Spty2d1 SPT2 chromatin protein domain containing 1 JBrowse link 1 103,115,280 103,129,438 RGD:1624291
RGD:13792537
G Tspy1 testis specific protein, Y-linked 1 JBrowse link Y 151,941 156,587 RGD:1600115
G Tspy26 testis specific protein, Y-linked 26 JBrowse link 3 148,704,896 148,706,972 RGD:1600115
G Tspyl1 TSPY-like 1 JBrowse link 20 41,083,317 41,085,876 RGD:1600115
G Tspyl2 TSPY-like 2 JBrowse link X 22,408,118 22,413,886 RGD:1600115
G Tspyl4 TSPY-like 4 JBrowse link 20 41,100,071 41,102,067 RGD:1600115
G Tspyl5 TSPY-like 5 JBrowse link 7 72,323,764 72,328,228 RGD:1600115
nucleosome positioning term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ctcf CCCTC-binding factor JBrowse link 19 37,600,151 37,649,674 RGD:1624291
RGD:1600115
G H1f0 H1 histone family, member 0 JBrowse link 7 120,260,776 120,262,636 RGD:13792537
G H1f10 H1.10 linker histone JBrowse link 4 119,889,016 119,892,661 RGD:13792537
G H1f7 H1.7 linker histone JBrowse link 7 139,871,491 139,872,858 RGD:13792537
G H1f8 H1.8 linker histone JBrowse link 4 147,844,658 147,849,779 RGD:1624291
RGD:13792537
RGD:1600115
G Hils1 histone linker H1 domain, spermatid-specific 1 JBrowse link 10 82,775,691 82,776,487 RGD:13792537
G Hist1h1a histone cluster 1 H1 family member a JBrowse link 17 43,614,101 43,614,844 RGD:13792537
G Hist1h1b histone cluster 1 H1 family member b JBrowse link 17 44,766,313 44,766,981 RGD:13792537
G Hist1h1c histone cluster 1 H1 family member c JBrowse link 17 43,638,938 43,640,445 RGD:1624291
RGD:13792537
G Hist1h1d histone cluster 1 H1 family member d JBrowse link 17 43,797,711 43,798,450 RGD:1624291
RGD:13792537
G Hist1h1e histone cluster 1 H1 family member e JBrowse link 17 43,734,461 43,735,120 RGD:1624291
RGD:13792537
G Hist1h1t histone cluster 1 H1 family member t JBrowse link 17 43,675,190 43,675,934 RGD:13792537
G Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component JBrowse link 1 85,362,421 85,367,999 RGD:1624291
RGD:1600115
G Prdm9 PR/SET domain 9 JBrowse link 1 57,533,602 57,555,155 RGD:1624291
RGD:1600115
G Rsf1 remodeling and spacing factor 1 JBrowse link 1 162,549,222 162,671,962 RGD:1624291
RGD:1600115
G Smarca1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 JBrowse link X 134,634,651 134,719,503 RGD:13792537
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 JBrowse link 19 30,936,703 30,969,454 RGD:1624291
RGD:13792537
pericentric heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cenpv centromere protein V JBrowse link 10 48,846,513 48,861,893 RGD:1624291
G H3f3a H3 histone family member 3A JBrowse link 13 99,091,246 99,102,828 RGD:1624291
RGD:1600115
G H3f3b H3 histone family member 3B JBrowse link 10 104,573,666 104,575,890 RGD:1624291
RGD:1600115
G Hells helicase, lymphoid specific JBrowse link 1 257,901,856 257,953,889 RGD:1624291
positive regulation of heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tpr translocated promoter region, nuclear basket protein JBrowse link 13 67,611,685 67,672,833 RGD:1624291
RGD:1600115
positive regulation of telomeric heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sirt6 sirtuin 6 JBrowse link 7 10,937,622 10,943,048 RGD:1624291
RGD:1600115
rDNA condensation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nipbl NIPBL, cohesin loading factor JBrowse link 2 57,508,830 57,676,197 RGD:13792537
regulation of chromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Parp10 poly (ADP-ribose) polymerase family, member 10 JBrowse link 7 117,291,592 117,300,878 RGD:1624291
G Spty2d1 SPT2 chromatin protein domain containing 1 JBrowse link 1 103,115,280 103,129,438 RGD:1624291
RGD:13792537
regulation of chromosome condensation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ccnb1 cyclin B1 JBrowse link 2 30,782,133 30,791,106 RGD:1578405
G Mcph1 microcephalin 1 JBrowse link 16 75,904,087 76,110,624 RGD:1624291
RGD:1600115
G Wapl WAPL cohesin release factor JBrowse link 16 11,029,325 11,108,867 RGD:1624291
RGD:13792537
senescence-associated heterochromatin focus assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdkn2a cyclin-dependent kinase inhibitor 2A JBrowse link 5 107,823,323 107,832,405 RGD:1624291
G Hmga1 high mobility group AT-hook 1 JBrowse link 20 7,132,501 7,140,155 RGD:1624291
RGD:1600115
G Hmga2 high mobility group AT-hook 2 JBrowse link 7 65,159,944 65,275,408 RGD:1624291
RGD:1600115
sperm chromatin condensation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fshr follicle stimulating hormone receptor JBrowse link 6 12,796,383 12,997,817 RGD:1624291
G H1f7 H1.7 linker histone JBrowse link 7 139,871,491 139,872,858 RGD:1624291
RGD:1600115
G Selenof selenoprotein F JBrowse link 2 250,600,823 250,633,903 RGD:728803
G Sycp1 synaptonemal complex protein 1 JBrowse link 2 205,274,766 205,426,869 RGD:1624291
RGD:1600115
G Sycp3 synaptonemal complex protein 3 JBrowse link 7 29,029,887 29,044,344 RGD:1624291
G Tssk6 testis-specific serine kinase 6 JBrowse link 16 21,272,282 21,274,756 RGD:1624291
RGD:1600115
spermatogenesis, exchange of chromosomal proteins term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Chd5 chromodomain helicase DNA binding protein 5 JBrowse link 5 169,519,212 169,572,059 RGD:1624291
RGD:1600115
G Fshr follicle stimulating hormone receptor JBrowse link 6 12,796,383 12,997,817 RGD:1624291
RGD:1600115
G Hist1h2ba histone cluster 1 H2B family member a JBrowse link 17 43,423,111 43,423,580 RGD:1624291
RGD:1600115
G Piwil1 piwi-like RNA-mediated gene silencing 1 JBrowse link 12 31,608,641 31,629,961 RGD:1624291
RGD:1600115
G Psme4 proteasome activator subunit 4 JBrowse link 14 115,166,165 115,269,041 RGD:1624291
RGD:13792537
G Rnf8 ring finger protein 8 JBrowse link 20 8,285,380 8,309,858 RGD:1624291
RGD:1600115
G Sycp3 synaptonemal complex protein 3 JBrowse link 7 29,029,887 29,044,344 RGD:1624291
RGD:1600115
G Tnp1 transition protein 1 JBrowse link 9 80,294,837 80,295,446 RGD:1600115
RGD:1624291
G Tnp2 transition protein 2 JBrowse link 10 4,953,898 4,954,626 RGD:1600115
RGD:1624291
telomeric heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G H3f3a H3 histone family member 3A JBrowse link 13 99,091,246 99,102,828 RGD:1624291
RGD:1600115
G H3f3b H3 histone family member 3B JBrowse link 10 104,573,666 104,575,890 RGD:1624291
RGD:1600115

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18008
    cellular component organization or biogenesis 6195
      cellular component organization 6014
        organelle organization 3676
          chromosome organization 1137
            DNA conformation change 247
              DNA packaging 166
                chromatin assembly + 124
                chromosome condensation + 44
                nonrepetitive DNA condensation 0
                nucleoid DNA packaging + 0
                rDNA condensation 1
                sperm chromatin condensation + 13
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.