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ONTOLOGY REPORT - ANNOTATIONS


Term:DNA packaging
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Accession:GO:0006323 term browser browse the term
Definition:Any process in which DNA and associated proteins are formed into a compact, orderly structure.
Synonyms:exact_synonym: DNA condensation;   DNA organisation;   DNA organization


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DNA packaging term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100979289 histone H2B type 1-A ISO (MGI:MGI:3702345|PMID:17261847) MGI PMID:17261847 MGI:MGI:3702345 NCBI chr 6:25,561,518...25,562,817
Ensembl chr 6:25,887,397...25,887,780
JBrowse link
apoptotic chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACIN1 apoptotic chromatin condensation inducer 1 ISO (PMID:10490026) UniProtKB PMID:10490026 NCBI chr14:3,878,426...3,915,802
Ensembl chr14:21,975,370...22,012,092
JBrowse link
G DFFB DNA fragmentation factor subunit beta ISO (PMID:10959840) UniProtKB PMID:10959840 NCBI chr 1:2,529,733...2,559,490
Ensembl chr 1:3,649,729...3,676,896
JBrowse link
G ERN2 endoplasmic reticulum to nucleus signaling 2 ISO (PMID:11175748) UniProtKB PMID:11175748 NCBI chr16:14,397,697...14,420,618
Ensembl chr16:23,940,716...23,963,894
JBrowse link
G LOC100967334 G-protein coupled estrogen receptor 1 ISO PMID:23907461 UniProt PMID:23907461 RGD:8553942 NCBI chr 7:1,245,873...1,251,915 JBrowse link
G TOP2A DNA topoisomerase II alpha ISO (PMID:10959840) UniProtKB PMID:10959840 NCBI chr17:16,872,169...16,901,605
Ensembl chr17:17,097,778...17,126,207
JBrowse link
CENP-A containing nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HJURP Holliday junction recognition protein ISO (PMID:19410544), (PMID:19410545) UniProtKB PMID:19410544, PMID:19410545 NCBI chr2B:121,076,314...121,096,783
Ensembl chr2B:239,950,984...239,967,955
JBrowse link
G MIS18A MIS18 kinetochore protein A ISO (MGI:MGI:5438906|PMID:22516971) MGI PMID:22516971 MGI:MGI:5438906 NCBI chr21:18,635,735...18,646,611
Ensembl chr21:32,016,547...32,027,430
JBrowse link
chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDAN1 codanin 1 ISO (PMID:22407294) UniProtKB PMID:22407294 NCBI chr15:21,684,234...21,697,840
Ensembl chr15:39,838,604...39,851,562
JBrowse link
G CHAF1A chromatin assembly factor 1 subunit A ISO (PMID:8858152) UniProtKB PMID:8858152 NCBI chr19:3,425,182...3,461,646
Ensembl chr19:4,375,379...4,409,339
JBrowse link
G CHAF1B chromatin assembly factor 1 subunit B ISO (PMID:8858152) UniProtKB PMID:8858152 NCBI chr21:22,755,721...22,786,958
Ensembl chr21:36,113,971...36,143,575
JBrowse link
G HMGB1 high mobility group box 1 ISO (MGI:MGI:3807115|PMID:18650382) UniProt PMID:18650382 MGI:MGI:3807115 NCBI chr13:11,737,942...11,894,923 JBrowse link
G NOC2L NOC2 like nucleolar associated transcriptional repressor ISO (PMID:16322561) UniProtKB PMID:16322561 Ensembl chr 1:843,551...857,535 JBrowse link
G RBBP4 RB binding protein 4, chromatin remodeling factor ISO (PMID:8858152) UniProtKB PMID:8858152 NCBI chr 1:31,944,257...31,974,763
Ensembl chr 1:33,111,234...33,140,518
JBrowse link
G TP53 tumor protein p53 ISO (PMID:16322561) UniProtKB PMID:16322561 NCBI chr17:7,699,449...7,717,812
Ensembl chr17:7,684,922...7,706,120
JBrowse link
chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDK1 cyclin dependent kinase 1 ISO RGD PMID:15695611 RGD:2301352 NCBI chr10:57,314,692...57,331,261
Ensembl chr10:59,647,993...59,664,434
JBrowse link
G SMC5 structural maintenance of chromosomes 5 ISO (MGI:MGI:5882483|PMID:26919979) MGI PMID:26919979 MGI:MGI:5882483 NCBI chr 9:54,446,863...54,543,249 JBrowse link
G TOP2A DNA topoisomerase II alpha ISO (MGI:MGI:2158879|PMID:11835580) MGI PMID:11835580 MGI:MGI:2158879 NCBI chr17:16,872,169...16,901,605
Ensembl chr17:17,097,778...17,126,207
JBrowse link
DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DNMT3A DNA methyltransferase 3 alpha ISO (MGI:MGI:3611125|PMID:16322236)
(MGI:MGI:3768461|PMID:17938196)
MGI PMID:16322236, PMID:17938196 MGI:MGI:3611125, MGI:MGI:3768461 NCBI chr2A:25,229,593...25,344,733
Ensembl chr2A:25,331,095...25,412,605
JBrowse link
G DNMT3B DNA methyltransferase 3 beta ISO (MGI:MGI:3768461|PMID:17938196) MGI PMID:17938196 MGI:MGI:3768461 NCBI chr20:29,049,993...29,096,957
Ensembl chr20:30,186,069...30,215,487
JBrowse link
G HDAC1 histone deacetylase 1 ISO (PMID:23770133) BHF-UCL PMID:23770133 NCBI chr 1:31,578,373...31,619,970
Ensembl chr 1:32,585,791...32,626,410
JBrowse link
G HELLS helicase, lymphoid specific ISO (MGI:MGI:3573964|PMID:15647320) UniProtKB PMID:15647320 MGI:MGI:3573964 NCBI chr10:91,282,330...91,344,156
Ensembl chr10:94,790,292...94,847,209
JBrowse link
G MBD2 methyl-CpG binding domain protein 2 ISO (PMID:23770133) BHF-UCL PMID:23770133 NCBI chr18:47,534,356...47,609,481 JBrowse link
G MBD3 methyl-CpG binding domain protein 3 ISO (MGI:MGI:3611125|PMID:16322236) MGI PMID:16322236 MGI:MGI:3611125 Ensembl chr19:1,549,184...1,559,254 JBrowse link
G SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 ISO (MGI:MGI:3611125|PMID:16322236) MGI PMID:16322236 MGI:MGI:3611125 NCBI chr19:10,515,216...10,616,155
Ensembl chr19:11,250,006...11,334,952
JBrowse link
DNA replication-dependent nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASF1A anti-silencing function 1A histone chaperone ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 6:116,702,314...116,717,445
Ensembl chr 6:120,843,461...120,858,471
JBrowse link
G ASF1B anti-silencing function 1B histone chaperone ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr19:13,685,617...13,702,367
Ensembl chr19:14,411,127...14,428,917
JBrowse link
G CHAF1A chromatin assembly factor 1 subunit A ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr19:3,425,182...3,461,646
Ensembl chr19:4,375,379...4,409,339
JBrowse link
G CHAF1B chromatin assembly factor 1 subunit B ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr21:22,755,721...22,786,958
Ensembl chr21:36,113,971...36,143,575
JBrowse link
G HAT1 histone acetyltransferase 1 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr2B:59,211,555...59,281,203
Ensembl chr2B:176,670,029...176,739,120
JBrowse link
G IPO4 importin 4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr14:4,956,456...4,965,305
Ensembl chr14:23,079,910...23,088,610
JBrowse link
G LOC100981824 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 6:26,971,978...26,975,626 JBrowse link
G LOC100985978 histone H3.1 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 6:27,642,894...27,644,248 JBrowse link
G LOC100991861 histone H3.1 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 6:25,865,046...25,865,544 JBrowse link
G LOC100992212 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 6:25,858,656...25,860,724 JBrowse link
G LOC112440133 histone H2A type 1-H ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 6:26,032,198...26,034,578
Ensembl chr 6:26,694,469...26,694,861
JBrowse link
G LOC112440134 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 6:26,022,725...26,024,812 JBrowse link
G LOC117974259 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr12:14,776,653...14,777,244 JBrowse link
G LOC117975185 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 1:125,196,600...125,205,588 JBrowse link
G NASP nuclear autoantigenic sperm protein ISO (PMID:14718166)
(MGI:MGI:3694318|PMID:16728391)
UniProtKB
UniProt
PMID:14718166, PMID:16728391 MGI:MGI:3694318 NCBI chr 1:44,885,433...44,920,159
Ensembl chr 1:46,242,841...46,278,737
JBrowse link
G RBBP4 RB binding protein 4, chromatin remodeling factor ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 1:31,944,257...31,974,763
Ensembl chr 1:33,111,234...33,140,518
JBrowse link
DNA replication-independent nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASF1A anti-silencing function 1A histone chaperone ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 6:116,702,314...116,717,445
Ensembl chr 6:120,843,461...120,858,471
JBrowse link
G ASF1B anti-silencing function 1B histone chaperone ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr19:13,685,617...13,702,367
Ensembl chr19:14,411,127...14,428,917
JBrowse link
G ATRX ATRX chromatin remodeler ISO (PMID:22391447) UniProtKB PMID:22391447 NCBI chr  X:66,682,968...66,969,421
Ensembl chr  X:76,795,574...77,083,486
JBrowse link
G CABIN1 calcineurin binding protein 1 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr22:4,816,411...4,984,760
Ensembl chr22:22,927,572...23,070,165
JBrowse link
G HAT1 histone acetyltransferase 1 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr2B:59,211,555...59,281,203
Ensembl chr2B:176,670,029...176,739,120
JBrowse link
G IPO4 importin 4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr14:4,956,456...4,965,305
Ensembl chr14:23,079,910...23,088,610
JBrowse link
G LOC100970414 histone H3.3A ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 1:201,523,670...201,533,005
Ensembl chr 1:206,520,109...206,529,447
JBrowse link
G LOC100977781 protein HIRA ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr22:2,087,846...2,191,192
Ensembl chr22:17,765,598...17,847,084
JBrowse link
G LOC100981824 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 6:26,971,978...26,975,626 JBrowse link
G LOC100988671 histone H3.3A ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr17:69,728,165...69,730,519
Ensembl chr17:75,277,614...75,281,106
JBrowse link
G LOC100992212 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 6:25,858,656...25,860,724 JBrowse link
G LOC112440134 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 6:26,022,725...26,024,812 JBrowse link
G LOC117974259 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr12:14,776,653...14,777,244 JBrowse link
G LOC117975185 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 1:125,196,600...125,205,588 JBrowse link
G NASP nuclear autoantigenic sperm protein ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 1:44,885,433...44,920,159
Ensembl chr 1:46,242,841...46,278,737
JBrowse link
G RBBP4 RB binding protein 4, chromatin remodeling factor ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 1:31,944,257...31,974,763
Ensembl chr 1:33,111,234...33,140,518
JBrowse link
G UBN1 ubinuclein 1 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr16:3,771,623...3,806,575
Ensembl chr16:4,942,191...4,970,986
JBrowse link
heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAHD1 bromo adjacent homology domain containing 1 ISO (PMID:19666599) UniProtKB PMID:19666599 NCBI chr15:19,376,233...19,404,699
Ensembl chr15:37,630,476...37,657,918
JBrowse link
G BAZ2A bromodomain adjacent to zinc finger domain 2A ISO (MGI:MGI:3653583|PMID:16678107)
(MGI:MGI:4462332|PMID:20168299)
MGI PMID:16678107, PMID:20168299 MGI:MGI:3653583, MGI:MGI:4462332 NCBI chr12:32,274,240...32,313,839
Ensembl chr12:32,529,634...32,566,248
JBrowse link
G EZH1 enhancer of zeste 1 polycomb repressive complex 2 subunit ISO (MGI:MGI:3820717|PMID:19026781) ARUK-UCL PMID:19026781 MGI:MGI:3820717 NCBI chr17:14,572,868...14,618,012
Ensembl chr17:14,814,054...14,842,295
JBrowse link
G HMGA2 high mobility group AT-hook 2 ISO (PMID:16901784) UniProtKB PMID:16901784 NCBI chr12:22,954,946...23,096,623 JBrowse link
G SIRT1 sirtuin 1 ISO (PMID:15469825) BHF-UCL PMID:15469825 NCBI chr10:64,368,878...64,401,684
Ensembl chr10:66,681,598...66,715,069
JBrowse link
histone H3-S10 phosphorylation involved in chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCNB1 cyclin B1 ISO (MGI:MGI:5494393|PMID:22053081) MGI PMID:22053081 MGI:MGI:5494393 NCBI chr 5:44,826,103...44,836,832
Ensembl chr 5:46,394,362...46,405,332
JBrowse link
inactivation of X chromosome by heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 ISO (MGI:MGI:5532809|PMID:23754746) UniProtKB PMID:23754746 MGI:MGI:5532809 NCBI chr18:11,479,742...11,627,035
Ensembl chr18:13,785,912...13,933,887
JBrowse link
meiotic chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MASTL microtubule associated serine/threonine kinase like ISO (PMID:23843240) AgBase PMID:23843240 NCBI chr10:27,264,475...27,296,085
Ensembl chr10:27,626,892...27,658,180
JBrowse link
G NCAPH non-SMC condensin I complex subunit H ISO (MGI:MGI:5317363|PMID:21795393)
(MGI:MGI:5784807|PMID:25961503)
MGI PMID:21795393, PMID:25961503 MGI:MGI:5317363, MGI:MGI:5784807 NCBI chr2A:102,939,357...102,980,091
Ensembl chr2A:97,258,412...97,299,906
JBrowse link
G NCAPH2 non-SMC condensin II complex subunit H2 ISO (MGI:MGI:5784807|PMID:25961503) MGI PMID:25961503 MGI:MGI:5784807 NCBI chr22:30,754,994...30,771,103
Ensembl chr22:49,873,223...49,881,027
JBrowse link
G SMC2 structural maintenance of chromosomes 2 ISO (MGI:MGI:5317363|PMID:21795393) MGI PMID:21795393 MGI:MGI:5317363 NCBI chr 9:75,273,163...75,323,486
Ensembl chr 9:103,402,967...103,449,949
JBrowse link
G SMC4 structural maintenance of chromosomes 4 ISO (MGI:MGI:5317363|PMID:21795393) MGI PMID:21795393 MGI:MGI:5317363 NCBI chr 3:157,421,548...157,456,593
Ensembl chr 3:165,469,567...165,504,967
JBrowse link
mitotic chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKAP8 A-kinase anchoring protein 8 ISO (MGI:MGI:3512088|PMID:12082153) MGI PMID:12082153 MGI:MGI:3512088 NCBI chr19:14,888,201...14,912,739
Ensembl chr19:15,872,536...15,897,661
JBrowse link
G AKAP8L A-kinase anchoring protein 8 like ISO (PMID:11034899) UniProtKB PMID:11034899 NCBI chr19:14,912,960...14,950,479
Ensembl chr19:15,897,969...15,936,486
JBrowse link
G CHMP1A charged multivesicular body protein 1A ISO (PMID:11559747) UniProtKB PMID:11559747 NCBI chr16:70,398,021...70,411,383
Ensembl chr16:90,003,892...90,017,653
JBrowse link
G NCAPD2 non-SMC condensin I complex subunit D2 ISO (PMID:27737959)
(PMID:11136719)
UniProt
UniProtKB
PMID:11136719, PMID:27737959 NCBI chr12:6,623,568...6,662,741
Ensembl chr12:6,540,750...6,580,206
JBrowse link
G NCAPD3 non-SMC condensin II complex subunit D3 ISO (PMID:14532007)
(PMID:27737959)
UniProtKB
UniProt
PMID:14532007, PMID:27737959 NCBI chr11:129,005,365...129,078,581
Ensembl chr11:132,865,349...132,935,590
JBrowse link
G NCAPG non-SMC condensin I complex subunit G ISO (PMID:11136719) UniProtKB PMID:11136719 NCBI chr 4:12,232,614...12,265,320
Ensembl chr 4:17,524,826...17,571,798
JBrowse link
G NCAPH non-SMC condensin I complex subunit H ISO (PMID:11136719), (PMID:11694586)
(PMID:27737959)
UniProtKB
UniProt
PMID:11136719, PMID:11694586, PMID:27737959 NCBI chr2A:102,939,357...102,980,091
Ensembl chr2A:97,258,412...97,299,906
JBrowse link
G NCAPH2 non-SMC condensin II complex subunit H2 ISO (MGI:MGI:5905517|PMID:27737959) UniProt PMID:27737959 MGI:MGI:5905517 NCBI chr22:30,754,994...30,771,103
Ensembl chr22:49,873,223...49,881,027
JBrowse link
G NUSAP1 nucleolar and spindle associated protein 1 ISO (PMID:12963707) MGI PMID:12963707 NCBI chr15:20,273,953...20,322,512 JBrowse link
G PHF13 PHD finger protein 13 ISO (PMID:19638409) UniProtKB PMID:19638409 NCBI chr 1:5,377,740...5,388,024
Ensembl chr 1:6,631,621...6,639,972
JBrowse link
G SMC2 structural maintenance of chromosomes 2 ISO (PMID:11136719) UniProtKB PMID:11136719 NCBI chr 9:75,273,163...75,323,486
Ensembl chr 9:103,402,967...103,449,949
JBrowse link
G SMC4 structural maintenance of chromosomes 4 ISO (PMID:11136719) UniProtKB PMID:11136719 NCBI chr 3:157,421,548...157,456,593
Ensembl chr 3:165,469,567...165,504,967
JBrowse link
G TTN titin ISO (PMID:9548712) BHF-UCL PMID:9548712 NCBI chr2B:65,783,512...66,064,618 JBrowse link
negative regulation of chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100970414 histone H3.3A ISO (MGI:MGI:5502235|PMID:23903189) MGI PMID:23903189 MGI:MGI:5502235 NCBI chr 1:201,523,670...201,533,005
Ensembl chr 1:206,520,109...206,529,447
JBrowse link
G LOC100988671 histone H3.3A ISO (MGI:MGI:5502235|PMID:23903189) MGI PMID:23903189 MGI:MGI:5502235 NCBI chr17:69,728,165...69,730,519
Ensembl chr17:75,277,614...75,281,106
JBrowse link
negative regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AICDA activation induced cytidine deaminase ISO (PMID:21496894) UniProtKB PMID:21496894 NCBI chr12:8,688,392...8,699,008
Ensembl chr12:8,904,273...8,913,917
JBrowse link
G APOBEC1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 ISO (MGI:MGI:5285126|PMID:21496894) UniProtKB PMID:21496894 MGI:MGI:5285126 NCBI chr12:7,777,734...7,793,960
Ensembl chr12:7,939,262...7,944,203
JBrowse link
G TET1 tet methylcytosine dioxygenase 1 ISO (PMID:21496894) UniProtKB PMID:21496894 NCBI chr10:65,036,313...65,168,051
Ensembl chr10:67,586,586...67,703,160
JBrowse link
negative regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PHF2 PHD finger protein 2 ISO (PMID:20129925) UniProtKB PMID:20129925 NCBI chr 9:64,700,151...64,803,737
Ensembl chr 9:92,815,392...92,863,817
JBrowse link
G PHF8 PHD finger protein 8 ISO (PMID:20208542) UniProtKB PMID:20208542 NCBI chr  X:46,144,815...46,250,594
Ensembl chr  X:54,250,970...54,355,913
JBrowse link
nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANP32B acidic nuclear phosphoprotein 32 family member B ISO (PMID:20538007) UniProtKB PMID:20538007 NCBI chr 9:69,075,972...69,108,178 JBrowse link
G ASF1A anti-silencing function 1A histone chaperone ISO (PMID:11897662) MGI PMID:11897662 NCBI chr 6:116,702,314...116,717,445
Ensembl chr 6:120,843,461...120,858,471
JBrowse link
G ASF1B anti-silencing function 1B histone chaperone ISO (MGI:MGI:2675150|PMID:12842904) MGI PMID:12842904 MGI:MGI:2675150 NCBI chr19:13,685,617...13,702,367
Ensembl chr19:14,411,127...14,428,917
JBrowse link
G ATRX ATRX chromatin remodeler ISO (PMID:20651253) UniProtKB PMID:20651253 NCBI chr  X:66,682,968...66,969,421
Ensembl chr  X:76,795,574...77,083,486
JBrowse link
G BRD2 bromodomain containing 2 ISO (PMID:18406326) UniProtKB PMID:18406326 NCBI chr 6:32,538,130...32,550,823
Ensembl chr 6:33,657,648...33,666,031
JBrowse link
G DAXX death domain associated protein ISO (PMID:20504901), (PMID:20651253)
(MGI:MGI:5567907|PMID:20651253)
UniProtKB PMID:20504901, PMID:20651253 MGI:MGI:5567907 NCBI chr 6:32,890,846...32,895,307
Ensembl chr 6:34,004,543...34,008,717
JBrowse link
G GRWD1 glutamate rich WD repeat containing 1 ISO (PMID:25990725)
(PMID:27552915)
UniProtKB PMID:25990725, PMID:27552915 NCBI chr19:45,447,004...45,455,976 JBrowse link
G HMGB1 high mobility group box 1 ISO (PMID:2465778) AgBase PMID:2465778 NCBI chr13:11,737,942...11,894,923 JBrowse link
G HMGB2 high mobility group box 2 ISO (PMID:2465778) AgBase PMID:2465778 NCBI chr 4:165,559,848...165,562,625
Ensembl chr 4:177,797,457...177,800,952
JBrowse link
G LOC100970414 histone H3.3A ISO (PMID:25615412)
(PMID:21636898)
UniProtKB PMID:21636898, PMID:25615412 NCBI chr 1:201,523,670...201,533,005
Ensembl chr 1:206,520,109...206,529,447
JBrowse link
G LOC100974795 histone H3.1t ISO (PMID:25615412)
(PMID:20498094)
UniProtKB PMID:20498094, PMID:25615412 NCBI chr 1:203,826,506...203,827,872
Ensembl chr 1:209,038,009...209,038,419
JBrowse link
G LOC100979289 histone H2B type 1-A ISO (MGI:MGI:3702345|PMID:17261847)
(PMID:24699735)
(MGI:MGI:5502464|PMID:23884607)
MGI
UniProtKB
PMID:17261847, PMID:23884607, PMID:24699735 MGI:MGI:3702345, MGI:MGI:5502464 NCBI chr 6:25,561,518...25,562,817
Ensembl chr 6:25,887,397...25,887,780
JBrowse link
G LOC100981824 histone H4 ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProtKB PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr 6:26,971,978...26,975,626 JBrowse link
G LOC100985978 histone H3.1 ISO (PMID:25615412)
(PMID:20498094), (PMID:21636898), (PMID:24699735)
UniProtKB PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr 6:27,642,894...27,644,248 JBrowse link
G LOC100988671 histone H3.3A ISO (PMID:25615412)
(PMID:21636898)
UniProtKB PMID:21636898, PMID:25615412 NCBI chr17:69,728,165...69,730,519
Ensembl chr17:75,277,614...75,281,106
JBrowse link
G LOC100991861 histone H3.1 ISO (PMID:25615412)
(PMID:20498094), (PMID:21636898), (PMID:24699735)
UniProtKB PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr 6:25,865,046...25,865,544 JBrowse link
G LOC100992212 histone H4 ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProtKB PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr 6:25,858,656...25,860,724 JBrowse link
G LOC100992822 histone H2A-Bbd type 2/3 ISO (PMID:22795134) UniProtKB PMID:22795134 NCBI chr  X:144,364,612...144,365,333 JBrowse link
G LOC112440133 histone H2A type 1-H ISO (PMID:25615412)
(PMID:20498094), (PMID:21636898), (PMID:24699735)
UniProtKB PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr 6:26,032,198...26,034,578
Ensembl chr 6:26,694,469...26,694,861
JBrowse link
G LOC112440134 histone H4 ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProtKB PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr 6:26,022,725...26,024,812 JBrowse link
G LOC117974259 histone H4 ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProtKB PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr12:14,776,653...14,777,244 JBrowse link
G LOC117975185 histone H4 ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProtKB PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr 1:125,196,600...125,205,588 JBrowse link
G LOC117977735 histone H2A-Bbd type 2/3 ISO (PMID:22795134) UniProtKB PMID:22795134 NCBI chr  X:144,849,954...144,850,606 JBrowse link
G LOC117980349 histone H3 ISO (PMID:21636898), (PMID:25615412) UniProtKB PMID:21636898, PMID:25615412 NCBI chr 1:125,196,255...125,197,305 JBrowse link
G MCM2 minichromosome maintenance complex component 2 ISO (MGI:MGI:2156014|PMID:10531422) MGI PMID:10531422 MGI:MGI:2156014 NCBI chr 3:124,643,362...124,667,121
Ensembl chr 3:131,950,887...131,974,641
JBrowse link
G NAA60 N-alpha-acetyltransferase 60, NatF catalytic subunit ISO (PMID:21981917) UniProtKB PMID:21981917 NCBI chr16:2,366,988...2,409,598
Ensembl chr16:3,543,418...3,586,299
JBrowse link
G NAP1L4 nucleosome assembly protein 1 like 4 ISO (MGI:MGI:5897488|PMID:28366643)
(PMID:9325046)
UniProtKB PMID:9325046, PMID:28366643 MGI:MGI:5897488 NCBI chr11:2,970,001...3,018,239
Ensembl chr11:2,997,726...3,044,848
JBrowse link
G NASP nuclear autoantigenic sperm protein ISO (PMID:25615412) UniProtKB PMID:25615412 NCBI chr 1:44,885,433...44,920,159
Ensembl chr 1:46,242,841...46,278,737
JBrowse link
G NPM1 nucleophosmin 1 ISO (PMID:11602260) UniProtKB PMID:11602260 NCBI chr 5:166,735,904...166,756,321
Ensembl chr 5:173,490,197...173,510,656
JBrowse link
G PADI4 peptidyl arginine deiminase 4 ISO (MGI:MGI:5545819|PMID:24463520) UniProtKB PMID:24463520 MGI:MGI:5545819 NCBI chr 1:16,255,680...16,311,256
Ensembl chr 1:17,311,436...17,365,426
JBrowse link
G RSF1 remodeling and spacing factor 1 ISO (PMID:12972596) UniProtKB PMID:12972596 NCBI chr11:72,724,124...72,885,063
Ensembl chr11:76,364,842...76,525,034
JBrowse link
G SART3 spliceosome associated factor 3, U4/U6 recycling protein ISO (PMID:24526689) UniProtKB PMID:24526689 NCBI chr12:106,093,738...106,132,710
Ensembl chr12:109,489,932...109,529,091
JBrowse link
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 ISO (PMID:12972596) UniProtKB PMID:12972596 NCBI chr 4:135,874,888...135,917,096
Ensembl chr 4:147,174,060...147,214,809
JBrowse link
G SMYD3 SET and MYND domain containing 3 ISO (MGI:MGI:5500979|PMID:23752591) MGI PMID:23752591 MGI:MGI:5500979 NCBI chr 1:221,371,348...222,125,774
Ensembl chr 1:226,737,960...227,481,191
JBrowse link
G SOX9 SRY-box transcription factor 9 ISO (PMID:20484372) UniProtKB PMID:20484372 NCBI chr17:66,028,737...66,034,122 JBrowse link
G SPTY2D1 SPT2 chromatin protein domain containing 1 ISO (PMID:23378026) UniProtKB PMID:23378026 NCBI chr11:18,636,884...18,665,108
Ensembl chr11:18,321,700...18,580,419
JBrowse link
nucleosome positioning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTCF CCCTC-binding factor ISO (PMID:18654629) UniProtKB PMID:18654629 NCBI chr16:47,906,503...47,983,271
Ensembl chr16:67,302,952...67,372,041
JBrowse link
G H1-2 H1.2 linker histone, cluster member ISO (MGI:MGI:2664444|PMID:12808097) MGI PMID:12808097 MGI:MGI:2664444 NCBI chr 6:25,891,079...25,891,859
Ensembl chr 6:26,549,016...26,549,657
JBrowse link
G H1-3 H1.3 linker histone, cluster member ISO (MGI:MGI:2664444|PMID:12808097) MGI PMID:12808097 MGI:MGI:2664444 NCBI chr 6:26,068,439...26,071,115
Ensembl chr 6:26,729,239...26,729,904
JBrowse link
G H1-4 H1.4 linker histone, cluster member ISO (MGI:MGI:2664444|PMID:12808097) MGI PMID:12808097 MGI:MGI:2664444 NCBI chr 6:25,992,845...26,006,585
Ensembl chr 6:26,652,151...26,652,810
Ensembl chr 6:26,652,151...26,652,810
JBrowse link
G LOC100993446 histone H1.8 ISO (MGI:MGI:5559660|PMID:22868987) UniProtKB PMID:22868987 MGI:MGI:5559660 NCBI chr 3:126,600,616...126,609,319
Ensembl chr 3:133,952,981...133,961,243
JBrowse link
G PAF1 PAF1 homolog, Paf1/RNA polymerase II complex component ISO (PMID:22046413) CACAO PMID:22046413 NCBI chr19:36,484,099...36,489,364
Ensembl chr19:45,031,819...45,037,169
JBrowse link
G PRDM9 PR/SET domain 9 ISO (PMID:29072575) UniProtKB PMID:29072575 NCBI chr 5:86,847,131...86,856,802
Ensembl chr 5:92,377,523...92,395,486
JBrowse link
G RSF1 remodeling and spacing factor 1 ISO (PMID:9836642) UniProtKB PMID:9836642 NCBI chr11:72,724,124...72,885,063
Ensembl chr11:76,364,842...76,525,034
JBrowse link
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 ISO (PMID:9836642) UniProtKB PMID:9836642 NCBI chr 4:135,874,888...135,917,096
Ensembl chr 4:147,174,060...147,214,809
JBrowse link
pericentric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CENPV centromere protein V ISO (PMID:18772885) UniProtKB PMID:18772885 NCBI chr17:35,247,664...35,258,656 JBrowse link
G DICER1 dicer 1, ribonuclease III ISO (MGI:MGI:3528782|PMID:15713842) MGI PMID:15713842 MGI:MGI:3528782 NCBI chr14:75,709,029...75,780,779
Ensembl chr14:95,036,385...95,107,940
JBrowse link
G HELLS helicase, lymphoid specific ISO (MGI:MGI:3041983|PMID:14612388) UniProtKB PMID:14612388 MGI:MGI:3041983 NCBI chr10:91,282,330...91,344,156
Ensembl chr10:94,790,292...94,847,209
JBrowse link
G LOC100970414 histone H3.3A ISO (MGI:MGI:5694896|PMID:26159997) MGI PMID:26159997 MGI:MGI:5694896 NCBI chr 1:201,523,670...201,533,005
Ensembl chr 1:206,520,109...206,529,447
JBrowse link
G LOC100988671 histone H3.3A ISO (MGI:MGI:5694896|PMID:26159997) MGI PMID:26159997 MGI:MGI:5694896 NCBI chr17:69,728,165...69,730,519
Ensembl chr17:75,277,614...75,281,106
JBrowse link
positive regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATF7IP activating transcription factor 7 interacting protein ISO (PMID:27732843) UniProt PMID:27732843 NCBI chr12:14,373,084...14,504,286
Ensembl chr12:14,789,794...14,900,411
JBrowse link
G DNMT1 DNA methyltransferase 1 ISO (PMID:24623306) UniProtKB PMID:24623306 NCBI chr19:9,681,847...9,745,334
Ensembl chr19:10,342,478...10,406,972
JBrowse link
G MORC2 MORC family CW-type zinc finger 2 ISO (PMID:28581500), (PMID:29211708)
(MGI:MGI:6271895|PMID:29728365)
UniProt PMID:28581500, PMID:29211708, PMID:29728365 MGI:MGI:6271895 NCBI chr22:11,912,043...11,995,497
Ensembl chr22:29,753,241...29,795,632
JBrowse link
G MPHOSPH8 M-phase phosphoprotein 8 ISO (PMID:28581500), (PMID:29211708) UniProt PMID:28581500, PMID:29211708 NCBI chr13:932,620...999,853
Ensembl chr13:19,278,149...19,316,389
JBrowse link
G PPHLN1 periphilin 1 ISO (PMID:28581500) UniProt PMID:28581500 NCBI chr12:46,271,425...46,392,128
Ensembl chr12:47,125,110...47,256,615
JBrowse link
G RESF1 retroelement silencing factor 1 ISO (MGI:MGI:6271895|PMID:29728365) UniProt PMID:29728365 MGI:MGI:6271895 NCBI chr12:54,238,276...54,272,288
Ensembl chr12:56,829,272...56,863,359
JBrowse link
G SETDB1 SET domain bifurcated histone lysine methyltransferase 1 ISO (PMID:24623306), (PMID:27732843)
(MGI:MGI:5440670|PMID:20164836), (MGI:MGI:6271895|PMID:29728365)
UniProt PMID:20164836, PMID:24623306, PMID:27732843, PMID:29728365 MGI:MGI:5440670, MGI:MGI:6271895 NCBI chr 1:126,275,719...126,314,043
Ensembl chr 1:129,925,009...129,962,442
JBrowse link
G TASOR transcription activation suppressor ISO (PMID:28581500), (PMID:29211708) UniProt PMID:28581500, PMID:29211708 NCBI chr 3:56,555,945...56,619,151
Ensembl chr 3:57,771,656...57,834,077
JBrowse link
G TRIM28 tripartite motif containing 28 ISO (PMID:24623306)
(MGI:MGI:5440670|PMID:20164836)
UniProtKB
UniProt
PMID:20164836, PMID:24623306 MGI:MGI:5440670 NCBI chr19:55,557,130...55,563,802
Ensembl chr19:64,371,477...64,377,144
JBrowse link
G ZNF304 zinc finger protein 304 ISO (PMID:24623306) UniProtKB PMID:24623306 NCBI chr19:54,365,820...54,374,436
Ensembl chr19:63,198,736...63,204,914
JBrowse link
positive regulation of heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TPR translocated promoter region, nuclear basket protein ISO (PMID:20407419) UniProtKB PMID:20407419 NCBI chr 1:161,842,037...161,903,567
Ensembl chr 1:165,993,726...166,055,223
JBrowse link
positive regulation of subtelomeric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SIRT6 sirtuin 6 ISO (PMID:21847107) BHF-UCL PMID:21847107 NCBI chr19:3,196,092...3,204,602
Ensembl chr19:4,146,057...4,154,126
JBrowse link
rDNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAZ2A bromodomain adjacent to zinc finger domain 2A ISO (MGI:MGI:3587127|PMID:16085498), (MGI:MGI:3653583|PMID:16678107), (MGI:MGI:3852313|PMID:12198165), (MGI:MGI:3852588|PMID:19578370)
(MGI:MGI:4462332|PMID:20168299)
MGI PMID:12198165, PMID:16085498, PMID:16678107, PMID:19578370, PMID:20168299 MGI:MGI:3587127, MGI:MGI:3653583, MGI:MGI:3852313, MGI:MGI:3852588, MGI:MGI:4462332 NCBI chr12:32,274,240...32,313,839
Ensembl chr12:32,529,634...32,566,248
JBrowse link
G BEND3 BEN domain containing 3 ISO (PMID:26100909) UniProtKB PMID:26100909 NCBI chr 6:104,875,201...104,926,926
Ensembl chr 6:108,745,993...108,778,116
JBrowse link
G RRP8 ribosomal RNA processing 8 ISO (PMID:18485871) UniProtKB PMID:18485871 NCBI chr11:6,630,695...6,735,711
Ensembl chr11:6,415,003...6,418,414
JBrowse link
G SIRT1 sirtuin 1 ISO (PMID:18485871) UniProtKB PMID:18485871 NCBI chr10:64,368,878...64,401,684
Ensembl chr10:66,681,598...66,715,069
JBrowse link
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 ISO (MGI:MGI:3587127|PMID:16085498) UniProtKB PMID:16085498 MGI:MGI:3587127 NCBI chr 4:135,874,888...135,917,096
Ensembl chr 4:147,174,060...147,214,809
JBrowse link
G SUV39H1 suppressor of variegation 3-9 homolog 1 ISO (PMID:18485871) UniProtKB PMID:18485871 NCBI chr  X:40,993,911...41,007,362
Ensembl chr  X:48,855,494...48,868,131
JBrowse link
G UBTF upstream binding transcription factor ISO (MGI:MGI:3836497|PMID:19103806) MGI PMID:19103806 MGI:MGI:3836497 NCBI chr17:13,176,228...13,191,283
Ensembl chr17:13,343,349...13,356,836
JBrowse link
regulation of chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PARP10 poly(ADP-ribose) polymerase family member 10 ISO (PMID:15674325) UniProtKB PMID:15674325 NCBI chr 8:140,743,061...140,744,014
Ensembl chr 8:143,735,819...143,744,138
JBrowse link
G SPTY2D1 SPT2 chromatin protein domain containing 1 ISO (PMID:26109053) UniProtKB PMID:26109053 NCBI chr11:18,636,884...18,665,108
Ensembl chr11:18,321,700...18,580,419
JBrowse link
regulation of chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCNB1 cyclin B1 ISO positive regulation RGD PMID:15291744 RGD:1578405 NCBI chr 5:44,826,103...44,836,832
Ensembl chr 5:46,394,362...46,405,332
JBrowse link
G MCPH1 microcephalin 1 ISO (MGI:MGI:4437500|PMID:20169082) MGI PMID:20169082 MGI:MGI:4437500 NCBI chr 8:624,877...877,839
Ensembl chr 8:6,409,072...6,646,394
JBrowse link
G WAPL WAPL cohesin release factor ISO (MGI:MGI:5544860|PMID:23975099) MGI PMID:23975099 MGI:MGI:5544860 NCBI chr10:82,862,852...82,953,284
Ensembl chr10:86,422,170...86,512,207
JBrowse link
regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POU5F1 POU class 5 homeobox 1 ISO (PMID:19736317) BHF-UCL PMID:19736317 NCBI chr 6:30,910,421...30,916,465
Ensembl chr 6:31,775,343...31,781,426
JBrowse link
regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100974858 core histone macro-H2A.1 NOT ISO (PMID:24071584) UniProtKB PMID:24071584 NCBI chr 5:130,727,065...130,791,932
Ensembl chr 5:136,868,521...136,933,834
JBrowse link
senescence-associated heterochromatin focus assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDKN2A cyclin dependent kinase inhibitor 2A ISO (PMID:16901784) UniProtKB PMID:16901784 NCBI chr 9:21,803,862...21,831,322 JBrowse link
G HMGA1 high mobility group AT-hook 1 ISO (PMID:16901784) UniProtKB PMID:16901784 NCBI chr 6:33,807,171...33,816,603 JBrowse link
G HMGA2 high mobility group AT-hook 2 ISO (PMID:16901784) UniProtKB PMID:16901784 NCBI chr12:22,954,946...23,096,623 JBrowse link
sperm chromatin condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FSHR follicle stimulating hormone receptor ISO (MGI:MGI:1855818|PMID:10775161) MGI PMID:10775161 MGI:MGI:1855818 NCBI chr2A:49,088,450...49,287,688
Ensembl chr2A:50,008,328...50,207,258
JBrowse link
G LOC100987154 testis-specific H1 histone ISO (MGI:MGI:3531623|PMID:15710904) UniProtKB PMID:15710904 MGI:MGI:3531623 NCBI chr12:40,402,590...40,406,005
Ensembl chr12:41,281,177...41,281,944
JBrowse link
G SELENOF selenoprotein F ISO RGD PMID:11344099 RGD:728803 NCBI chr 1:119,382,707...119,432,277
Ensembl chr 1:88,234,383...88,282,944
JBrowse link
G SYCP1 synaptonemal complex protein 1 ISO (MGI:MGI:5315075|PMID:22164254) MGI PMID:22164254 MGI:MGI:5315075 NCBI chr 1:87,565,888...87,701,530
Ensembl chr 1:122,614,520...122,754,137
JBrowse link
G SYCP3 synaptonemal complex protein 3 ISO (MGI:MGI:5315075|PMID:22164254) MGI PMID:22164254 MGI:MGI:5315075 NCBI chr12:99,311,260...99,322,007
Ensembl chr12:102,711,837...102,720,728
JBrowse link
G TSSK6 testis specific serine kinase 6 ISO (MGI:MGI:3580211|PMID:15870294) UniProtKB PMID:15870294 MGI:MGI:3580211 NCBI chr19:18,952,643...18,954,101
Ensembl chr19:19,950,614...19,951,435
JBrowse link
spermatogenesis, exchange of chromosomal proteins term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHD5 chromodomain helicase DNA binding protein 5 ISO (MGI:MGI:5559810|PMID:24252660) UniProtKB PMID:24252660 MGI:MGI:5559810 NCBI chr 1:4,867,636...4,947,401
Ensembl chr 1:6,125,525...6,191,991
JBrowse link
G FSHR follicle stimulating hormone receptor ISO (MGI:MGI:2682484|PMID:14680821) MGI PMID:14680821 MGI:MGI:2682484 NCBI chr2A:49,088,450...49,287,688
Ensembl chr2A:50,008,328...50,207,258
JBrowse link
G LOC100979289 histone H2B type 1-A ISO (MGI:MGI:5502464|PMID:23884607) UniProtKB PMID:23884607 MGI:MGI:5502464 NCBI chr 6:25,561,518...25,562,817
Ensembl chr 6:25,887,397...25,887,780
JBrowse link
G PIWIL1 piwi like RNA-mediated gene silencing 1 ISO (MGI:MGI:5905675|PMID:28552346) UniProtKB PMID:28552346 MGI:MGI:5905675 NCBI chr12:127,951,178...127,986,173
Ensembl chr12:132,169,820...132,199,374
JBrowse link
G PSME4 proteasome activator subunit 4 ISO (MGI:MGI:5494329|PMID:23706739) UniProtKB PMID:23706739 MGI:MGI:5494329 NCBI chr2A:54,007,224...54,113,557
Ensembl chr2A:54,919,094...55,024,551
JBrowse link
G RNF8 ring finger protein 8 ISO (MGI:MGI:5905675|PMID:28552346) UniProtKB PMID:28552346 MGI:MGI:5905675 NCBI chr 6:36,918,705...36,955,380
Ensembl chr 6:38,108,414...38,145,949
JBrowse link
G SYCP3 synaptonemal complex protein 3 ISO (PMID:14643120) UniProtKB PMID:14643120 NCBI chr12:99,311,260...99,322,007
Ensembl chr12:102,711,837...102,720,728
JBrowse link
G TNP1 transition protein 1 ISO (MGI:MGI:3041389|PMID:15083521), (MGI:MGI:3056208|PMID:15189834), (MGI:MGI:3620321|PMID:15163613), (MGI:MGI:5897488|PMID:28366643) UniProtKB PMID:15083521, PMID:15163613, PMID:15189834, PMID:28366643 MGI:MGI:3041389, MGI:MGI:3056208, MGI:MGI:3620321, MGI:MGI:5897488 NCBI chr2B:104,122,748...104,123,349
Ensembl chr2B:222,723,606...222,724,212
JBrowse link
G TNP2 transition protein 2 ISO (MGI:MGI:3041389|PMID:15083521), (MGI:MGI:3056208|PMID:15189834), (MGI:MGI:3620321|PMID:15163613), (MGI:MGI:5897488|PMID:28366643) UniProtKB PMID:15083521, PMID:15163613, PMID:15189834, PMID:28366643 MGI:MGI:3041389, MGI:MGI:3056208, MGI:MGI:3620321, MGI:MGI:5897488 NCBI chr16:10,209,801...10,211,466
Ensembl chr16:11,431,822...11,433,087
JBrowse link
subtelomeric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100970414 histone H3.3A ISO (MGI:MGI:5694896|PMID:26159997) MGI PMID:26159997 MGI:MGI:5694896 NCBI chr 1:201,523,670...201,533,005
Ensembl chr 1:206,520,109...206,529,447
JBrowse link
G LOC100988671 histone H3.3A ISO (MGI:MGI:5694896|PMID:26159997) MGI PMID:26159997 MGI:MGI:5694896 NCBI chr17:69,728,165...69,730,519
Ensembl chr17:75,277,614...75,281,106
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12527
    cellular process 11621
      cellular component organization or biogenesis 4979
        cellular component organization 4899
          organelle organization 3023
            chromosome organization 877
              DNA conformation change 167
                DNA packaging 133
                  chromatin assembly + 97
                  chromosome condensation + 26
                  nonrepetitive DNA condensation 0
                  nucleoid DNA packaging + 0
                  rDNA condensation 0
                  sperm chromatin condensation + 13
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.