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ONTOLOGY REPORT - ANNOTATIONS


Term:DNA packaging
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Accession:GO:0006323 term browser browse the term
Definition:Any process in which DNA and associated proteins are formed into a compact, orderly structure.
Synonyms:exact_synonym: DNA condensation;   DNA organisation;   DNA organization


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DNA packaging term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC102030314 histone H2B type 1-A ISO (MGI:MGI:3702345|PMID:17261847) MGI PMID:17261847 MGI:MGI:3702345 NCBI chrNW_004955483:1,354,587...1,358,368 JBrowse link
apoptotic chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acin1 apoptotic chromatin condensation inducer 1 ISO (PMID:10490026) UniProtKB PMID:10490026 NCBI chrNW_004955409:37,206,675...37,246,851 JBrowse link
G Dffb DNA fragmentation factor subunit beta ISO (PMID:10959840) UniProtKB PMID:10959840 NCBI chrNW_004955486:7,836,013...7,849,875 JBrowse link
G Ern2 endoplasmic reticulum to nucleus signaling 2 ISO (PMID:11175748) UniProtKB PMID:11175748 NCBI chrNW_004955493:2,217,187...2,233,920 JBrowse link
G Gper1 G protein-coupled estrogen receptor 1 ISO PMID:23907461 UniProt PMID:23907461 RGD:8553942 NCBI chrNW_004955460:8,790,798...8,794,902 JBrowse link
G Top2a DNA topoisomerase II alpha ISO (PMID:10959840) UniProtKB PMID:10959840 NCBI chrNW_004955451:14,928,273...14,964,855 JBrowse link
CENP-A containing nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hjurp Holliday junction recognition protein ISO (PMID:19410544), (PMID:19410545) UniProtKB PMID:19410544, PMID:19410545 NCBI chrNW_004955453:2,323,018...2,335,090 JBrowse link
G Mis18a MIS18 kinetochore protein A ISO (MGI:MGI:5438906|PMID:22516971) MGI PMID:22516971 MGI:MGI:5438906 NCBI chrNW_004955407:31,799,537...31,813,897 JBrowse link
chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdan1 codanin 1 ISO (PMID:22407294) UniProtKB PMID:22407294 NCBI chrNW_004955416:9,393,170...9,403,374 JBrowse link
G Chaf1a chromatin assembly factor 1 subunit A ISO (PMID:8858152) UniProtKB PMID:8858152 NCBI chrNW_004955495:4,467,317...4,499,419 JBrowse link
G Chaf1b chromatin assembly factor 1 subunit B ISO (PMID:8858152) UniProtKB PMID:8858152 NCBI chrNW_004955407:35,601,992...35,618,287 JBrowse link
G Hmgb1 high mobility group box 1 ISO (MGI:MGI:3807115|PMID:18650382) UniProt PMID:18650382 MGI:MGI:3807115 NCBI chrNW_004955431:15,373,207...15,377,339 JBrowse link
G Noc2l NOC2 like nucleolar associated transcriptional repressor ISO (PMID:16322561) UniProtKB PMID:16322561 NCBI chrNW_004955486:9,750,969...9,763,622 JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor ISO (PMID:8858152) UniProtKB PMID:8858152 NCBI chrNW_004955452:10,955,399...10,975,036 JBrowse link
G Tp53 tumor protein p53 ISO (PMID:16322561) UniProtKB PMID:16322561 NCBI chrNW_004955467:9,241,391...9,256,716 JBrowse link
chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk1 cyclin dependent kinase 1 ISO RGD PMID:15695611 RGD:2301352 NCBI chrNW_004955425:14,210,681...14,226,474 JBrowse link
G Smc5 structural maintenance of chromosomes 5 ISO (MGI:MGI:5882483|PMID:26919979) MGI PMID:26919979 MGI:MGI:5882483 NCBI chrNW_004955434:2,742,276...2,848,384 JBrowse link
G Top2a DNA topoisomerase II alpha ISO (MGI:MGI:2158879|PMID:11835580) MGI PMID:11835580 MGI:MGI:2158879 NCBI chrNW_004955451:14,928,273...14,964,855 JBrowse link
DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt3a DNA methyltransferase 3 alpha ISO (MGI:MGI:3611125|PMID:16322236)
(MGI:MGI:3768461|PMID:17938196)
MGI PMID:16322236, PMID:17938196 MGI:MGI:3611125, MGI:MGI:3768461 NCBI chrNW_004955469:7,264,431...7,367,059 JBrowse link
G Dnmt3b DNA methyltransferase 3 beta ISO (MGI:MGI:3768461|PMID:17938196) MGI PMID:17938196 MGI:MGI:3768461 NCBI chrNW_004955422:28,380,595...28,427,012 JBrowse link
G Hdac1 histone deacetylase 1 ISO (PMID:23770133) BHF-UCL PMID:23770133 NCBI chrNW_004955452:10,636,366...10,668,873 JBrowse link
G Hells helicase, lymphoid specific ISO (MGI:MGI:3573964|PMID:15647320) UniProtKB PMID:15647320 MGI:MGI:3573964 NCBI chrNW_004955507:995,389...1,034,852 JBrowse link
G Mbd2 methyl-CpG binding domain protein 2 ISO (PMID:23770133) BHF-UCL PMID:23770133 NCBI chrNW_004955402:38,761,668...38,829,830 JBrowse link
G Mbd3 methyl-CpG binding domain protein 3 ISO (MGI:MGI:3611125|PMID:16322236) MGI PMID:16322236 MGI:MGI:3611125 NCBI chrNW_004955495:6,385,449...6,388,911 JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 ISO (MGI:MGI:3611125|PMID:16322236) MGI PMID:16322236 MGI:MGI:3611125 NCBI chrNW_004955495:2,021,671...2,105,155 JBrowse link
DNA replication-dependent nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asf1a anti-silencing function 1A histone chaperone ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004955436:1,635,397...1,640,989 JBrowse link
G Asf1b anti-silencing function 1B histone chaperone ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004955415:32,818,592...32,828,651 JBrowse link
G Chaf1a chromatin assembly factor 1 subunit A ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004955495:4,467,317...4,499,419 JBrowse link
G Chaf1b chromatin assembly factor 1 subunit B ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004955407:35,601,992...35,618,287 JBrowse link
G Hat1 histone acetyltransferase 1 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004955449:3,026,194...3,070,448 JBrowse link
G Ipo4 importin 4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004955409:36,214,704...36,223,714 JBrowse link
G LOC102006228 histone H3 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004955465:13,338,289...13,339,268 JBrowse link
G LOC102027630 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004955413:11,517,229...11,517,609 JBrowse link
G Nasp nuclear autoantigenic sperm protein ISO (MGI:MGI:3694318|PMID:16728391)
(PMID:14718166)
UniProt
UniProtKB
PMID:14718166, PMID:16728391 MGI:MGI:3694318 NCBI chrNW_004955464:12,667,050...12,697,021 JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004955452:10,955,399...10,975,036 JBrowse link
DNA replication-independent nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asf1a anti-silencing function 1A histone chaperone ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004955436:1,635,397...1,640,989 JBrowse link
G Asf1b anti-silencing function 1B histone chaperone ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004955415:32,818,592...32,828,651 JBrowse link
G Atrx ATRX chromatin remodeler ISO (PMID:22391447) UniProtKB PMID:22391447 NCBI chrNW_004955557:947,368...1,252,701 JBrowse link
G Cabin1 calcineurin binding protein 1 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004955455:8,162,365...8,312,932 JBrowse link
G H3f3a H3 histone, family 3A ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004955489:269,900...278,398 JBrowse link
G H3f3b H3 histone, family 3B ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004955506:6,475,336...6,478,781 JBrowse link
G Hat1 histone acetyltransferase 1 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004955449:3,026,194...3,070,448 JBrowse link
G Ipo4 importin 4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004955409:36,214,704...36,223,714 JBrowse link
G LOC102009660 protein HIRA ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004955442:18,581,370...18,673,590 JBrowse link
G LOC102027630 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004955413:11,517,229...11,517,609 JBrowse link
G Nasp nuclear autoantigenic sperm protein ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004955464:12,667,050...12,697,021 JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004955452:10,955,399...10,975,036 JBrowse link
G Ubn1 ubinuclein 1 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004955442:12,627,530...12,654,159 JBrowse link
heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bahd1 bromo adjacent homology domain containing 1 ISO (PMID:19666599) UniProtKB PMID:19666599 NCBI chrNW_004955416:7,376,794...7,388,577 JBrowse link
G Baz2a bromodomain adjacent to zinc finger domain 2A ISO (MGI:MGI:4462332|PMID:20168299)
(MGI:MGI:3653583|PMID:16678107)
MGI PMID:16678107, PMID:20168299 MGI:MGI:3653583, MGI:MGI:4462332 NCBI chrNW_004955458:4,149,610...4,186,647 JBrowse link
G Ezh1 enhancer of zeste 1 polycomb repressive complex 2 subunit ISO (MGI:MGI:3820717|PMID:19026781) ARUK-UCL PMID:19026781 MGI:MGI:3820717 NCBI chrNW_004955451:16,548,898...16,563,449 JBrowse link
G Hmga2 high mobility group AT-hook 2 ISO (PMID:16901784) UniProtKB PMID:16901784 NCBI chrNW_004955458:12,493,790...12,624,805 JBrowse link
G Sirt1 sirtuin 1 ISO (PMID:15469825) BHF-UCL PMID:15469825 NCBI chrNW_004955425:20,280,725...20,307,663 JBrowse link
histone H3-S10 phosphorylation involved in chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnb1 cyclin B1 ISO (MGI:MGI:5494393|PMID:22053081) MGI PMID:22053081 MGI:MGI:5494393 NCBI chrNW_004955446:140,661...149,500 JBrowse link
inactivation of X chromosome by heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smchd1 structural maintenance of chromosomes flexible hinge domain containing 1 ISO (MGI:MGI:5532809|PMID:23754746) UniProtKB PMID:23754746 MGI:MGI:5532809 NCBI chrNW_004955402:7,544,265...7,661,191 JBrowse link
meiotic chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mastl microtubule associated serine/threonine kinase like ISO (PMID:23843240) AgBase PMID:23843240 NCBI chrNW_004955429:2,591,173...2,617,084 JBrowse link
G Ncaph non-SMC condensin I complex subunit H ISO (MGI:MGI:5317363|PMID:21795393)
(MGI:MGI:5784807|PMID:25961503)
MGI PMID:21795393, PMID:25961503 MGI:MGI:5317363, MGI:MGI:5784807 NCBI chrNW_004955470:3,878,896...3,909,087 JBrowse link
G Ncaph2 non-SMC condensin II complex subunit H2 ISO (MGI:MGI:5784807|PMID:25961503) MGI PMID:25961503 MGI:MGI:5784807 NCBI chrNW_004955413:33,492,348...33,503,804 JBrowse link
G Smc2 structural maintenance of chromosomes 2 ISO (MGI:MGI:5317363|PMID:21795393) MGI PMID:21795393 MGI:MGI:5317363 NCBI chrNW_004955419:22,245,843...22,294,508 JBrowse link
G Smc4 structural maintenance of chromosomes 4 ISO (MGI:MGI:5317363|PMID:21795393) MGI PMID:21795393 MGI:MGI:5317363 NCBI chrNW_004955448:10,926,653...10,960,624 JBrowse link
mitotic chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akap8 A-kinase anchoring protein 8 ISO (MGI:MGI:3512088|PMID:12082153) MGI PMID:12082153 MGI:MGI:3512088 NCBI chrNW_004955495:7,874,655...7,893,209 JBrowse link
G Akap8l A-kinase anchoring protein 8 like ISO (PMID:11034899) UniProtKB PMID:11034899 NCBI chrNW_004955495:7,839,339...7,874,432 JBrowse link
G Cdca5 cell division cycle associated 5 ISO (PMID:15837422) UniProtKB PMID:15837422 NCBI chrNW_004955422:20,114,565...20,129,679 JBrowse link
G Chmp1a charged multivesicular body protein 1A ISO (PMID:11559747) UniProtKB PMID:11559747 NCBI chrNW_004955541:3,216,972...3,223,636 JBrowse link
G Ncapd2 non-SMC condensin I complex subunit D2 ISO (PMID:27737959)
(PMID:11136719)
UniProt
UniProtKB
PMID:11136719, PMID:27737959 NCBI chrNW_004955413:4,136,492...4,160,550 JBrowse link
G Ncapd3 non-SMC condensin II complex subunit D3 ISO (PMID:27737959)
(PMID:14532007)
UniProt
UniProtKB
PMID:14532007, PMID:27737959 NCBI chrNW_004955412:34,967,464...35,035,103 JBrowse link
G Ncapg non-SMC condensin I complex subunit G ISO (PMID:11136719) UniProtKB PMID:11136719 NCBI chrNW_004955480:6,399,891...6,430,617 JBrowse link
G Ncaph non-SMC condensin I complex subunit H ISO (PMID:27737959)
(PMID:11136719), (PMID:11694586)
UniProt
UniProtKB
PMID:11136719, PMID:11694586, PMID:27737959 NCBI chrNW_004955470:3,878,896...3,909,087 JBrowse link
G Ncaph2 non-SMC condensin II complex subunit H2 ISO (MGI:MGI:5905517|PMID:27737959) UniProt PMID:27737959 MGI:MGI:5905517 NCBI chrNW_004955413:33,492,348...33,503,804 JBrowse link
G Nusap1 nucleolar and spindle associated protein 1 ISO (PMID:12963707) MGI PMID:12963707 NCBI chrNW_004955416:8,178,493...8,208,336 JBrowse link
G Phf13 PHD finger protein 13 ISO (PMID:19638409) UniProtKB PMID:19638409 NCBI chrNW_004955486:6,018,614...6,025,473 JBrowse link
G Smc2 structural maintenance of chromosomes 2 ISO (PMID:11136719) UniProtKB PMID:11136719 NCBI chrNW_004955419:22,245,843...22,294,508 JBrowse link
G Smc4 structural maintenance of chromosomes 4 ISO (PMID:11136719) UniProtKB PMID:11136719 NCBI chrNW_004955448:10,926,653...10,960,624 JBrowse link
G Ttn titin ISO (PMID:9548712) BHF-UCL PMID:9548712 NCBI chrNW_004955403:18,057,344...18,328,389 JBrowse link
negative regulation of chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H3f3a H3 histone, family 3A ISO (MGI:MGI:5502235|PMID:23903189) MGI PMID:23903189 MGI:MGI:5502235 NCBI chrNW_004955489:269,900...278,398 JBrowse link
G H3f3b H3 histone, family 3B ISO (MGI:MGI:5502235|PMID:23903189) MGI PMID:23903189 MGI:MGI:5502235 NCBI chrNW_004955506:6,475,336...6,478,781 JBrowse link
negative regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 ISO (MGI:MGI:5285126|PMID:21496894) UniProtKB PMID:21496894 MGI:MGI:5285126 NCBI chrNW_004955413:6,471,933...6,480,475 JBrowse link
G Tet1 tet methylcytosine dioxygenase 1 ISO (PMID:21496894) UniProtKB PMID:21496894 NCBI chrNW_004955425:20,767,406...20,857,165 JBrowse link
negative regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phf2 PHD finger protein 2 ISO (PMID:20129925) UniProtKB PMID:20129925 NCBI chrNW_004955515:4,428,068...4,471,642 JBrowse link
G Phf8 PHD finger protein 8 ISO (PMID:20208542) UniProtKB PMID:20208542 NCBI chrNW_004955475:1,105,619...1,230,758 JBrowse link
nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anp32b acidic nuclear phosphoprotein 32 family member B ISO (PMID:20538007) UniProtKB PMID:20538007 NCBI chrNW_004955419:27,471,539...27,553,078 JBrowse link
G Asf1a anti-silencing function 1A histone chaperone ISO (PMID:11897662) MGI PMID:11897662 NCBI chrNW_004955436:1,635,397...1,640,989 JBrowse link
G Asf1b anti-silencing function 1B histone chaperone ISO (MGI:MGI:2675150|PMID:12842904) MGI PMID:12842904 MGI:MGI:2675150 NCBI chrNW_004955415:32,818,592...32,828,651 JBrowse link
G Atrx ATRX chromatin remodeler ISO (PMID:20651253) UniProtKB PMID:20651253 NCBI chrNW_004955557:947,368...1,252,701 JBrowse link
G Brd2 bromodomain containing 2 ISO (PMID:18406326) UniProtKB PMID:18406326 NCBI chrNW_004955437:1,584,890...1,592,486 JBrowse link
G Daxx death domain associated protein ISO (MGI:MGI:5567907|PMID:20651253)
(PMID:20504901), (PMID:20651253)
UniProtKB PMID:20504901, PMID:20651253 MGI:MGI:5567907 NCBI chrNW_004955437:1,869,692...1,874,041 JBrowse link
G Grwd1 glutamate rich WD repeat containing 1 ISO (PMID:25990725)
(PMID:27552915)
UniProtKB PMID:25990725, PMID:27552915 NCBI chrNW_004955559:2,033,743...2,039,493 JBrowse link
G H3f3a H3 histone, family 3A ISO (PMID:25615412)
(PMID:21636898)
UniProtKB PMID:21636898, PMID:25615412 NCBI chrNW_004955489:269,900...278,398 JBrowse link
G H3f3b H3 histone, family 3B ISO (PMID:21636898)
(PMID:25615412)
UniProtKB PMID:21636898, PMID:25615412 NCBI chrNW_004955506:6,475,336...6,478,781 JBrowse link
G Hmgb1 high mobility group box 1 ISO (PMID:2465778) AgBase PMID:2465778 NCBI chrNW_004955431:15,373,207...15,377,339 JBrowse link
G Hmgb2 high mobility group box 2 ISO (PMID:2465778) AgBase PMID:2465778 NCBI chrNW_004955403:33,656,314...33,659,115 JBrowse link
G LOC102006228 histone H3 ISO (PMID:20498094), (PMID:21636898), (PMID:24699735)
(PMID:25615412)
UniProtKB PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chrNW_004955465:13,338,289...13,339,268 JBrowse link
G LOC102021406 histone H2A ISO (PMID:22795134) UniProtKB PMID:22795134 NCBI chrNW_004955593:911,641...911,919 JBrowse link
G LOC102027630 histone H4 ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProtKB PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chrNW_004955413:11,517,229...11,517,609 JBrowse link
G LOC102030314 histone H2B type 1-A ISO (MGI:MGI:5502464|PMID:23884607)
(PMID:24699735)
(MGI:MGI:3702345|PMID:17261847)
UniProtKB
MGI
PMID:17261847, PMID:23884607, PMID:24699735 MGI:MGI:3702345, MGI:MGI:5502464 NCBI chrNW_004955483:1,354,587...1,358,368 JBrowse link
G Mcm2 minichromosome maintenance complex component 2 ISO (MGI:MGI:2156014|PMID:10531422) MGI PMID:10531422 MGI:MGI:2156014 NCBI chrNW_004955429:16,012,345...16,027,151 JBrowse link
G Naa60 N-alpha-acetyltransferase 60, NatF catalytic subunit ISO (PMID:21981917) UniProtKB PMID:21981917 NCBI chrNW_004955442:13,895,248...13,926,152 JBrowse link
G Nap1l4 nucleosome assembly protein 1 like 4 ISO (MGI:MGI:5897488|PMID:28366643)
(PMID:9325046)
UniProtKB PMID:9325046, PMID:28366643 MGI:MGI:5897488 NCBI chrNW_004955422:14,630,858...14,673,171 JBrowse link
G Nasp nuclear autoantigenic sperm protein ISO (PMID:25615412) UniProtKB PMID:25615412 NCBI chrNW_004955464:12,667,050...12,697,021 JBrowse link
G Npm1 nucleophosmin 1 ISO (PMID:11602260) UniProtKB PMID:11602260 NCBI chrNW_004955408:24,151,070...24,218,783 JBrowse link
G Padi4 peptidyl arginine deiminase 4 ISO (MGI:MGI:5545819|PMID:24463520) UniProtKB PMID:24463520 MGI:MGI:5545819 NCBI chrNW_004955527:1,536,917...1,560,508 JBrowse link
G Rsf1 remodeling and spacing factor 1 ISO (PMID:12972596) UniProtKB PMID:12972596 NCBI chrNW_004955414:14,084,812...14,212,162 JBrowse link
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein ISO (PMID:24526689) UniProtKB PMID:24526689 NCBI chrNW_004955455:9,802,260...9,833,326 JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 ISO (PMID:12972596) UniProtKB PMID:12972596 NCBI chrNW_004955471:12,206,462...12,240,219 JBrowse link
G Smyd3 SET and MYND domain containing 3 ISO (MGI:MGI:5500979|PMID:23752591) MGI PMID:23752591 MGI:MGI:5500979 NCBI chrNW_004955406:8,768,365...9,417,612 JBrowse link
G Sox9 SRY-box transcription factor 9 ISO (PMID:20484372) UniProtKB PMID:20484372 NCBI chrNW_004955478:941,684...945,563 JBrowse link
G Spty2d1 SPT2 chromatin protein domain containing 1 ISO (PMID:23378026) UniProtKB PMID:23378026 NCBI chrNW_004955414:33,255,048...33,272,861 JBrowse link
nucleosome positioning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctcf CCCTC-binding factor ISO (PMID:18654629) UniProtKB PMID:18654629 NCBI chrNW_004955484:9,041,226...9,092,924 JBrowse link
G H1-2 H1.2 linker histone, cluster member ISO (MGI:MGI:2664444|PMID:12808097) MGI PMID:12808097 MGI:MGI:2664444 NCBI chrNW_004955483:961,317...962,727 JBrowse link
G H1-4 H1.4 linker histone, cluster member ISO (MGI:MGI:2664444|PMID:12808097) MGI PMID:12808097 MGI:MGI:2664444 NCBI chrNW_004955483:870,957...871,724 JBrowse link
G LOC102023622 histone H1oo ISO (MGI:MGI:5559660|PMID:22868987) UniProtKB PMID:22868987 MGI:MGI:5559660 NCBI chrNW_004955429:17,778,193...17,783,307 JBrowse link
G Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component ISO (PMID:22046413) CACAO PMID:22046413 NCBI chrNW_004955468:166,477...172,200 JBrowse link
G Rsf1 remodeling and spacing factor 1 ISO (PMID:9836642) UniProtKB PMID:9836642 NCBI chrNW_004955414:14,084,812...14,212,162 JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 ISO (PMID:9836642) UniProtKB PMID:9836642 NCBI chrNW_004955471:12,206,462...12,240,219 JBrowse link
pericentric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cenpv centromere protein V ISO (PMID:18772885) UniProtKB PMID:18772885 NCBI chrNW_004955467:1,657,765...1,669,758 JBrowse link
G Dicer1 dicer 1, ribonuclease III ISO (MGI:MGI:3528782|PMID:15713842) MGI PMID:15713842 MGI:MGI:3528782 NCBI chrNW_004955438:17,374,899...17,431,599 JBrowse link
G H3f3a H3 histone, family 3A ISO (MGI:MGI:5694896|PMID:26159997) MGI PMID:26159997 MGI:MGI:5694896 NCBI chrNW_004955489:269,900...278,398 JBrowse link
G H3f3b H3 histone, family 3B ISO (MGI:MGI:5694896|PMID:26159997) MGI PMID:26159997 MGI:MGI:5694896 NCBI chrNW_004955506:6,475,336...6,478,781 JBrowse link
G Hells helicase, lymphoid specific ISO (MGI:MGI:3041983|PMID:14612388) UniProtKB PMID:14612388 MGI:MGI:3041983 NCBI chrNW_004955507:995,389...1,034,852 JBrowse link
positive regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf7ip activating transcription factor 7 interacting protein ISO (PMID:27732843) UniProt PMID:27732843 NCBI chrNW_004955413:11,117,369...11,261,787 JBrowse link
G Dnmt1 DNA methyltransferase 1 ISO (PMID:24623306) UniProtKB PMID:24623306 NCBI chrNW_004955495:1,465,529...1,505,379 JBrowse link
G Morc2 MORC family CW-type zinc finger 2 ISO (MGI:MGI:6271895|PMID:29728365)
(PMID:28581500), (PMID:29211708)
UniProt PMID:28581500, PMID:29211708, PMID:29728365 MGI:MGI:6271895 NCBI chrNW_004955455:5,124,737...5,164,495 JBrowse link
G Mphosph8 M-phase phosphoprotein 8 ISO (PMID:28581500), (PMID:29211708) UniProt PMID:28581500, PMID:29211708 NCBI chrNW_004955497:518,462...546,748 JBrowse link
G Pphln1 periphilin 1 ISO (PMID:28581500) UniProt PMID:28581500 NCBI chrNW_004955500:1,744,968...1,892,056 JBrowse link
G Resf1 retroelement silencing factor 1 ISO (MGI:MGI:6271895|PMID:29728365) UniProt PMID:29728365 MGI:MGI:6271895 NCBI chrNW_004955505:3,684,848...3,709,624 JBrowse link
G Setdb1 SET domain bifurcated histone lysine methyltransferase 1 ISO (PMID:24623306), (PMID:27732843)
(MGI:MGI:5440670|PMID:20164836), (MGI:MGI:6271895|PMID:29728365)
UniProt PMID:20164836, PMID:24623306, PMID:27732843, PMID:29728365 MGI:MGI:5440670, MGI:MGI:6271895 NCBI chrNW_004955588:290,497...338,438 JBrowse link
G Tasor transcription activation suppressor ISO (PMID:28581500), (PMID:29211708) UniProt PMID:28581500, PMID:29211708 NCBI chrNW_004955430:6,440,655...6,480,956 JBrowse link
G Trim28 tripartite motif containing 28 ISO (PMID:24623306)
(MGI:MGI:5440670|PMID:20164836)
UniProtKB
UniProt
PMID:20164836, PMID:24623306 MGI:MGI:5440670 NCBI chrNW_004955584:1,148,903...1,156,001 JBrowse link
positive regulation of heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tpr translocated promoter region, nuclear basket protein ISO (PMID:20407419) UniProtKB PMID:20407419 NCBI chrNW_004955406:24,742,525...24,805,989 JBrowse link
positive regulation of subtelomeric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sirt6 sirtuin 6 ISO (PMID:21847107) BHF-UCL PMID:21847107 NCBI chrNW_004955495:4,641,883...4,650,518 JBrowse link
rDNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baz2a bromodomain adjacent to zinc finger domain 2A ISO (MGI:MGI:4462332|PMID:20168299)
(MGI:MGI:3587127|PMID:16085498), (MGI:MGI:3653583|PMID:16678107), (MGI:MGI:3852313|PMID:12198165), (MGI:MGI:3852588|PMID:19578370)
MGI PMID:12198165, PMID:16085498, PMID:16678107, PMID:19578370, PMID:20168299 MGI:MGI:3587127, MGI:MGI:3653583, MGI:MGI:3852313, MGI:MGI:3852588, MGI:MGI:4462332 NCBI chrNW_004955458:4,149,610...4,186,647 JBrowse link
G Bend3 BEN domain containing 3 ISO (PMID:26100909) UniProtKB PMID:26100909 NCBI chrNW_004955411:32,346,573...32,384,796 JBrowse link
G Rrp8 ribosomal RNA processing 8 ISO (PMID:18485871) UniProtKB PMID:18485871 NCBI chrNW_004955414:22,311,038...22,316,144 JBrowse link
G Sirt1 sirtuin 1 ISO (PMID:18485871) UniProtKB PMID:18485871 NCBI chrNW_004955425:20,280,725...20,307,663 JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 ISO (MGI:MGI:3587127|PMID:16085498) UniProtKB PMID:16085498 MGI:MGI:3587127 NCBI chrNW_004955471:12,206,462...12,240,219 JBrowse link
G Suv39h1 suppressor of variegation 3-9 homolog 1 ISO (PMID:18485871) UniProtKB PMID:18485871 NCBI chrNW_004955543:258,479...271,128 JBrowse link
G Ubtf upstream binding transcription factor ISO (MGI:MGI:3836497|PMID:19103806) MGI PMID:19103806 MGI:MGI:3836497 NCBI chrNW_004955451:17,294,163...17,302,807 JBrowse link
regulation of chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Parp10 poly(ADP-ribose) polymerase family member 10 ISO (PMID:15674325) UniProtKB PMID:15674325 NCBI chrNW_004955454:2,644,718...2,651,962 JBrowse link
G Spty2d1 SPT2 chromatin protein domain containing 1 ISO (PMID:26109053) UniProtKB PMID:26109053 NCBI chrNW_004955414:33,255,048...33,272,861 JBrowse link
regulation of chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnb1 cyclin B1 ISO positive regulation RGD PMID:15291744 RGD:1578405 NCBI chrNW_004955446:140,661...149,500 JBrowse link
G Mcph1 microcephalin 1 ISO (MGI:MGI:4437500|PMID:20169082) MGI PMID:20169082 MGI:MGI:4437500 NCBI chrNW_004955403:54,143,454...54,273,201 JBrowse link
G Wapl WAPL cohesin release factor ISO (MGI:MGI:5544860|PMID:23975099) MGI PMID:23975099 MGI:MGI:5544860 NCBI chrNW_004955510:5,596,622...5,674,221 JBrowse link
regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pou5f1 POU class 5 homeobox 1 ISO (PMID:19736317) BHF-UCL PMID:19736317 NCBI chrNW_004955583:995,707...1,003,202 JBrowse link
regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC102008188 core histone macro-H2A.1 NOT ISO (PMID:24071584) UniProtKB PMID:24071584 NCBI chrNW_004955408:30,497,531...30,550,095 JBrowse link
senescence-associated heterochromatin focus assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmga1 high mobility group AT-hook 1 ISO (PMID:16901784) UniProtKB PMID:16901784 NCBI chrNW_004955437:2,478,414...2,486,809 JBrowse link
G Hmga2 high mobility group AT-hook 2 ISO (PMID:16901784) UniProtKB PMID:16901784 NCBI chrNW_004955458:12,493,790...12,624,805 JBrowse link
sperm chromatin condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fshr follicle stimulating hormone receptor ISO (MGI:MGI:1855818|PMID:10775161) MGI PMID:10775161 MGI:MGI:1855818 NCBI chrNW_004955441:15,422,190...15,585,446 JBrowse link
G LOC106146871 testis-specific H1 histone ISO (MGI:MGI:3531623|PMID:15710904) UniProtKB PMID:15710904 MGI:MGI:3531623 NCBI chrNW_004955500:7,329,361...7,329,842 JBrowse link
G Selenof selenoprotein F ISO RGD PMID:11344099 RGD:728803 NCBI chrNW_004955423:7,253,980...7,285,442 JBrowse link
G Sycp1 synaptonemal complex protein 1 ISO (MGI:MGI:5315075|PMID:22164254) MGI PMID:22164254 MGI:MGI:5315075 NCBI chrNW_004955435:18,157,173...18,291,732 JBrowse link
G Sycp3 synaptonemal complex protein 3 ISO (MGI:MGI:5315075|PMID:22164254) MGI PMID:22164254 MGI:MGI:5315075 NCBI chrNW_004955405:37,093,330...37,102,789 JBrowse link
G Tssk6 testis specific serine kinase 6 ISO (MGI:MGI:3580211|PMID:15870294) UniProtKB PMID:15870294 MGI:MGI:3580211 NCBI chrNW_004955524:2,433,855...2,434,864 JBrowse link
spermatogenesis, exchange of chromosomal proteins term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chd5 chromodomain helicase DNA binding protein 5 ISO (MGI:MGI:5559810|PMID:24252660) UniProtKB PMID:24252660 MGI:MGI:5559810 NCBI chrNW_004955486:6,320,380...6,369,020 JBrowse link
G Fshr follicle stimulating hormone receptor ISO (MGI:MGI:2682484|PMID:14680821) MGI PMID:14680821 MGI:MGI:2682484 NCBI chrNW_004955441:15,422,190...15,585,446 JBrowse link
G LOC102030314 histone H2B type 1-A ISO (MGI:MGI:5502464|PMID:23884607) UniProtKB PMID:23884607 MGI:MGI:5502464 NCBI chrNW_004955483:1,354,587...1,358,368 JBrowse link
G Piwil1 piwi like RNA-mediated gene silencing 1 ISO (MGI:MGI:5905675|PMID:28552346) UniProtKB PMID:28552346 MGI:MGI:5905675 NCBI chrNW_004955482:1,435,925...1,451,067 JBrowse link
G Psme4 proteasome activator subunit 4 ISO (MGI:MGI:5494329|PMID:23706739) UniProtKB PMID:23706739 MGI:MGI:5494329 NCBI chrNW_004955441:19,586,567...19,663,335 JBrowse link
G Rnf8 ring finger protein 8 ISO (MGI:MGI:5905675|PMID:28552346) UniProtKB PMID:28552346 MGI:MGI:5905675 NCBI chrNW_004955437:5,807,592...5,832,213 JBrowse link
G Sycp3 synaptonemal complex protein 3 ISO (PMID:14643120) UniProtKB PMID:14643120 NCBI chrNW_004955405:37,093,330...37,102,789 JBrowse link
G Tnp1 transition protein 1 ISO (MGI:MGI:3041389|PMID:15083521), (MGI:MGI:3056208|PMID:15189834), (MGI:MGI:3620321|PMID:15163613), (MGI:MGI:5897488|PMID:28366643) UniProtKB PMID:15083521, PMID:15163613, PMID:15189834, PMID:28366643 MGI:MGI:3041389, MGI:MGI:3056208, MGI:MGI:3620321, MGI:MGI:5897488 NCBI chrNW_004955453:16,387,897...16,388,513 JBrowse link
G Tnp2 transition protein 2 ISO (MGI:MGI:3041389|PMID:15083521), (MGI:MGI:3056208|PMID:15189834), (MGI:MGI:3620321|PMID:15163613), (MGI:MGI:5897488|PMID:28366643) UniProtKB PMID:15083521, PMID:15163613, PMID:15189834, PMID:28366643 MGI:MGI:3041389, MGI:MGI:3056208, MGI:MGI:3620321, MGI:MGI:5897488 NCBI chrNW_004955442:7,311,826...7,314,046 JBrowse link
subtelomeric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H3f3a H3 histone, family 3A ISO (MGI:MGI:5694896|PMID:26159997) MGI PMID:26159997 MGI:MGI:5694896 NCBI chrNW_004955489:269,900...278,398 JBrowse link
G H3f3b H3 histone, family 3B ISO (MGI:MGI:5694896|PMID:26159997) MGI PMID:26159997 MGI:MGI:5694896 NCBI chrNW_004955506:6,475,336...6,478,781 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11860
    cellular process 11055
      cellular component organization or biogenesis 4837
        cellular component organization 4757
          organelle organization 2937
            chromosome organization 843
              DNA conformation change 154
                DNA packaging 120
                  chromatin assembly + 83
                  chromosome condensation + 27
                  nonrepetitive DNA condensation 0
                  nucleoid DNA packaging + 0
                  rDNA condensation 0
                  sperm chromatin condensation + 13
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.