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ONTOLOGY REPORT - ANNOTATIONS


Term:DNA packaging
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Accession:GO:0006323 term browser browse the term
Definition:Any process in which DNA and associated proteins are formed into a compact, orderly structure.
Synonyms:exact_synonym: DNA condensation;   DNA organisation;   DNA organization


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DNA packaging term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H2BC1 H2B clustered histone 1 ISO (MGI:MGI:3702345|PMID:17261847) MGI PMID:17261847 MGI:MGI:3702345 NCBI chr35:23,677,952...23,678,432 JBrowse link
G PRM2 protamine 2 IEA InterPro GO_REF:0000002 NCBI chr 6:31,492,208...31,492,852
Ensembl chr 6:31,492,208...31,492,852
JBrowse link
apoptotic chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACIN1 apoptotic chromatin condensation inducer 1 IEA Ensembl GO_REF:0000107 NCBI chr 8:3,370,469...3,405,710
Ensembl chr 8:3,371,004...3,405,682
JBrowse link
G DFFB DNA fragmentation factor subunit beta ISO (PMID:10959840) UniProtKB PMID:10959840 NCBI chr 5:58,340,183...58,355,353
Ensembl chr 5:58,339,634...58,354,326
JBrowse link
G ERN2 endoplasmic reticulum to nucleus signaling 2 IEA Ensembl GO_REF:0000107 NCBI chr 6:22,150,275...22,165,382
Ensembl chr 6:22,150,307...22,165,614
JBrowse link
G GPER1 G protein-coupled estrogen receptor 1 ISO PMID:23907461 UniProt PMID:23907461 RGD:8553942 NCBI chr 6:15,792,072...15,796,922
Ensembl chr 6:15,792,897...15,794,051
JBrowse link
G TOP2A DNA topoisomerase II alpha IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:22,207,501...22,237,497
Ensembl chr 9:22,207,638...22,237,496
JBrowse link
CENP-A containing nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CENPP centromere protein P IEA InterPro GO_REF:0000002 NCBI chr 1:98,801,384...99,019,371
Ensembl chr 1:98,799,939...99,019,334
JBrowse link
G HJURP Holliday junction recognition protein IEA Ensembl GO_REF:0000107 NCBI chr25:45,215,165...45,230,603
Ensembl chr25:45,215,380...45,230,547
JBrowse link
G ITGB3BP integrin subunit beta 3 binding protein IEA InterPro GO_REF:0000002 NCBI chr 5:46,645,858...46,716,170
Ensembl chr 5:46,681,412...46,701,509
JBrowse link
G MIS18A MIS18 kinetochore protein A IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr31:27,025,657...27,039,001
Ensembl chr31:27,025,709...27,039,028
JBrowse link
G NASP nuclear autoantigenic sperm protein IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:14,742,008...14,782,186
Ensembl chr15:14,742,012...14,808,592
JBrowse link
G OIP5 Opa interacting protein 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr30:8,377,407...8,396,222
Ensembl chr30:8,381,395...8,396,096
JBrowse link
chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDAN1 codanin 1 IEA Ensembl GO_REF:0000107 NCBI chr30:9,656,408...9,668,898
Ensembl chr30:9,656,871...9,668,653
JBrowse link
G CHAF1A chromatin assembly factor 1 subunit A ISO (PMID:8858152) UniProtKB PMID:8858152 NCBI chr20:55,248,286...55,276,425
Ensembl chr20:55,248,288...55,276,900
JBrowse link
G CHAF1B chromatin assembly factor 1 subunit B ISO (PMID:8858152) UniProtKB PMID:8858152 NCBI chr31:31,599,840...31,620,436
Ensembl chr31:31,600,448...31,619,784
JBrowse link
G HMGB1 high mobility group box 1 IEA Ensembl GO_REF:0000107 NCBI chr25:9,431,223...9,558,167
Ensembl chr25:9,431,218...9,558,165
JBrowse link
G NOC2L NOC2 like nucleolar associated transcriptional repressor IEA Ensembl GO_REF:0000107 NCBI chr 5:56,172,399...56,185,993
Ensembl chr 5:56,172,446...56,185,932
JBrowse link
G RBBP4 RB binding protein 4, chromatin remodeling factor ISO (PMID:8858152) UniProtKB PMID:8858152 NCBI chr 2:68,638,459...68,660,942
Ensembl chr 2:68,638,498...68,660,910
JBrowse link
G TP53 tumor protein p53 IEA Ensembl GO_REF:0000107 NCBI chr 5:32,561,406...32,565,149
Ensembl chr 5:32,560,598...32,574,109
JBrowse link
chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BANF2 BANF family member 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr24:5,274,524...5,308,606
Ensembl chr24:5,274,553...5,307,433
JBrowse link
G CDK1 cyclin dependent kinase 1 ISO RGD PMID:15695611 RGD:2301352 NCBI chr 4:12,884,106...12,899,203
Ensembl chr 4:12,883,385...12,899,197
JBrowse link
G H1-2 H1.2 linker histone, cluster member IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:24,009,304...24,011,602 JBrowse link
G H1-4 H1.4 linker histone, cluster member IBA (PMID:21873635) GO_Central PMID:21873635
G H1-6 H1.6 linker histone, cluster member IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:24,046,374...24,065,892
Ensembl chr35:24,044,188...24,047,810
JBrowse link
G H1-8 H1.8 linker histone IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:5,614,822...5,619,136
Ensembl chr20:5,617,001...5,624,352
JBrowse link
G H1-9 H1.9 linker histone IBA (PMID:21873635) GO_Central PMID:21873635 Ensembl chr 9:26,169,774...26,170,316 JBrowse link
G SMC5 structural maintenance of chromosomes 5 ISO (MGI:MGI:5882483|PMID:26919979) MGI PMID:26919979 MGI:MGI:5882483 NCBI chr 1:87,192,988...87,285,678
Ensembl chr 1:87,194,867...87,285,606
JBrowse link
G TOP2A DNA topoisomerase II alpha ISO (MGI:MGI:2158879|PMID:11835580) MGI PMID:11835580 MGI:MGI:2158879 NCBI chr 9:22,207,501...22,237,497
Ensembl chr 9:22,207,638...22,237,496
JBrowse link
DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DNMT3A DNA methyltransferase 3 alpha IEA Ensembl GO_REF:0000107 NCBI chr17:19,489,524...19,563,074
Ensembl chr17:19,492,193...19,563,902
JBrowse link
G DNMT3B DNA methyltransferase 3 beta ISO (MGI:MGI:3768461|PMID:17938196) MGI PMID:17938196 MGI:MGI:3768461 NCBI chr24:22,096,386...22,123,378
Ensembl chr24:22,096,349...22,122,900
JBrowse link
G HDAC1 histone deacetylase 1 IEA Ensembl GO_REF:0000107 NCBI chr 2:68,901,339...68,936,473
Ensembl chr 2:68,901,651...68,936,186
JBrowse link
G HELLS helicase, lymphoid specific IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr28:8,660,866...8,705,570
Ensembl chr28:8,661,008...8,705,580
JBrowse link
G MBD2 methyl-CpG binding domain protein 2 IEA Ensembl GO_REF:0000107 NCBI chr 1:21,232,260...21,283,687
Ensembl chr 1:21,235,967...21,283,346
JBrowse link
G MBD3 methyl-CpG binding domain protein 3 IEA Ensembl GO_REF:0000107 NCBI chr20:57,296,713...57,312,988
Ensembl chr20:57,296,713...57,307,110
JBrowse link
G SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 ISO (MGI:MGI:3611125|PMID:16322236) MGI PMID:16322236 MGI:MGI:3611125 NCBI chr20:50,175,489...50,268,865
Ensembl chr20:50,175,687...50,268,836
JBrowse link
DNA replication-dependent nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKR1A1 aldo-keto reductase family 1 member A1 IEA Ensembl GO_REF:0000107 NCBI chr15:14,792,398...14,808,805
Ensembl chr15:14,742,012...14,808,592
JBrowse link
G ASF1A anti-silencing function 1A histone chaperone IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:58,821,324...58,834,935
Ensembl chr 1:58,821,521...58,946,475
JBrowse link
G ASF1B anti-silencing function 1B histone chaperone IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:48,398,615...48,406,889 JBrowse link
G CHAF1A chromatin assembly factor 1 subunit A IEA Ensembl GO_REF:0000107 NCBI chr20:55,248,286...55,276,425
Ensembl chr20:55,248,288...55,276,900
JBrowse link
G CHAF1B chromatin assembly factor 1 subunit B IEA Ensembl GO_REF:0000107 NCBI chr31:31,599,840...31,620,436
Ensembl chr31:31,600,448...31,619,784
JBrowse link
G H3C1 H3 clustered histone 1 IEA Ensembl GO_REF:0000107 NCBI chr35:23,975,775...23,977,803
Ensembl chr35:23,977,201...23,977,611
JBrowse link
G H3C12 H3 clustered histone 12 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr35:25,058,040...25,060,132
Ensembl chr35:25,059,288...25,059,698
JBrowse link
G H3C2 H3 clustered histone 2 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr35:23,989,431...23,989,871 JBrowse link
G H3C7 H3 clustered histone 7 IEA Ensembl GO_REF:0000107 NCBI chr35:24,174,818...24,177,957
Ensembl chr35:24,177,521...24,177,931
JBrowse link
G H4-16 H4 histone 16 IEA Ensembl GO_REF:0000107 NCBI chr27:31,839,899...31,840,463
Ensembl chr27:31,840,011...31,840,322
JBrowse link
G H4C11 H4 clustered histone 11 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr35:25,009,935...25,012,013
Ensembl chr35:25,011,693...25,011,998
JBrowse link
G H4C13 H4 clustered histone 13 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr35:25,015,108...25,051,906 JBrowse link
G H4C14 H4 clustered histone 14 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr17:59,129,585...59,130,048
Ensembl chr17:59,129,682...59,129,993
JBrowse link
G H4C8 H4 clustered histone 8 IEA Ensembl GO_REF:0000107 NCBI chr35:24,174,401...24,194,848
Ensembl chr27:31,840,011...31,840,322
Ensembl chr17:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
JBrowse link
G H4C9 H4 clustered histone 9 IEA Ensembl GO_REF:0000107 NCBI chr35:24,555,412...24,556,402
Ensembl chr35:24,556,015...24,556,326
JBrowse link
G HAT1 histone acetyltransferase 1 IEA Ensembl GO_REF:0000107 NCBI chr36:16,310,269...16,378,029
Ensembl chr36:16,310,710...16,378,017
JBrowse link
G IPO4 importin 4 IEA Ensembl GO_REF:0000107 NCBI chr 8:4,171,525...4,180,666
Ensembl chr 8:4,171,527...4,181,151
JBrowse link
G NASP nuclear autoantigenic sperm protein IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr15:14,742,008...14,782,186
Ensembl chr15:14,742,012...14,808,592
JBrowse link
G RBBP4 RB binding protein 4, chromatin remodeling factor ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 2:68,638,459...68,660,942
Ensembl chr 2:68,638,498...68,660,910
JBrowse link
DNA replication-independent nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKR1A1 aldo-keto reductase family 1 member A1 IEA Ensembl GO_REF:0000107 NCBI chr15:14,792,398...14,808,805
Ensembl chr15:14,742,012...14,808,592
JBrowse link
G ASF1A anti-silencing function 1A histone chaperone IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:58,821,324...58,834,935
Ensembl chr 1:58,821,521...58,946,475
JBrowse link
G ASF1B anti-silencing function 1B histone chaperone IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:48,398,615...48,406,889 JBrowse link
G ATRX ATRX chromatin remodeler IEA Ensembl GO_REF:0000107 NCBI chr  X:59,772,067...60,107,016
Ensembl chr  X:59,774,585...60,106,980
JBrowse link
G CABIN1 calcineurin binding protein 1 IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr26:28,366,264...28,517,570
Ensembl chr26:28,366,265...28,517,656
JBrowse link
G H3-3A H3.3 histone A IEA Ensembl GO_REF:0000107 NCBI chr 7:38,797,168...38,805,417
Ensembl chr 7:38,797,448...38,805,416
JBrowse link
G H3-3B H3.3 histone B IEA Ensembl GO_REF:0000107 NCBI chr 9:4,805,655...4,808,076
Ensembl chr 9:4,805,650...4,833,503
JBrowse link
G H4-16 H4 histone 16 IEA Ensembl GO_REF:0000107 NCBI chr27:31,839,899...31,840,463
Ensembl chr27:31,840,011...31,840,322
JBrowse link
G H4C11 H4 clustered histone 11 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr35:25,009,935...25,012,013
Ensembl chr35:25,011,693...25,011,998
JBrowse link
G H4C13 H4 clustered histone 13 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr35:25,015,108...25,051,906 JBrowse link
G H4C14 H4 clustered histone 14 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr17:59,129,585...59,130,048
Ensembl chr17:59,129,682...59,129,993
JBrowse link
G H4C8 H4 clustered histone 8 IEA Ensembl GO_REF:0000107 NCBI chr35:24,174,401...24,194,848
Ensembl chr27:31,840,011...31,840,322
Ensembl chr17:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
JBrowse link
G H4C9 H4 clustered histone 9 IEA Ensembl GO_REF:0000107 NCBI chr35:24,555,412...24,556,402
Ensembl chr35:24,556,015...24,556,326
JBrowse link
G HAT1 histone acetyltransferase 1 IEA Ensembl GO_REF:0000107 NCBI chr36:16,310,269...16,378,029
Ensembl chr36:16,310,710...16,378,017
JBrowse link
G HIRA histone cell cycle regulator IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr26:29,777,984...29,867,992
Ensembl chr26:29,778,086...29,867,559
JBrowse link
G IPO4 importin 4 IEA Ensembl GO_REF:0000107 NCBI chr 8:4,171,525...4,180,666
Ensembl chr 8:4,171,527...4,181,151
JBrowse link
G NASP nuclear autoantigenic sperm protein IEA Ensembl GO_REF:0000107 NCBI chr15:14,742,008...14,782,186
Ensembl chr15:14,742,012...14,808,592
JBrowse link
G RBBP4 RB binding protein 4, chromatin remodeling factor ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 2:68,638,459...68,660,942
Ensembl chr 2:68,638,498...68,660,910
JBrowse link
G UBN1 ubinuclein 1 IEA Ensembl GO_REF:0000107 NCBI chr 6:36,542,266...36,581,789
Ensembl chr 6:36,544,405...36,581,797
JBrowse link
heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAHD1 bromo adjacent homology domain containing 1 IEA Ensembl GO_REF:0000107 NCBI chr30:7,609,087...7,638,880
Ensembl chr30:7,613,345...7,638,880
JBrowse link
G BAZ2A bromodomain adjacent to zinc finger domain 2A ISO (MGI:MGI:4462332|PMID:20168299)
(MGI:MGI:3653583|PMID:16678107)
MGI PMID:16678107, PMID:20168299 MGI:MGI:3653583, MGI:MGI:4462332 NCBI chr10:834,018...868,817
Ensembl chr10:836,465...863,874
JBrowse link
G EZH1 enhancer of zeste 1 polycomb repressive complex 2 subunit ISO (MGI:MGI:3820717|PMID:19026781) ARUK-UCL PMID:19026781 MGI:MGI:3820717 NCBI chr 9:20,271,729...20,292,918
Ensembl chr 9:20,264,552...20,290,712
JBrowse link
G HMGA2 high mobility group AT-hook 2 ISO (PMID:16901784) UniProtKB PMID:16901784 NCBI chr10:8,348,101...8,491,435 JBrowse link
G POLE3 DNA polymerase epsilon 3, accessory subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:67,757,779...67,760,417
Ensembl chr11:67,758,918...67,760,374
JBrowse link
G SIRT1 sirtuin 1 ISO (PMID:15469825) BHF-UCL PMID:15469825 NCBI chr 4:19,188,616...19,220,031
Ensembl chr 4:19,188,675...19,218,279
JBrowse link
heterochromatin assembly by small RNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FAM172A family with sequence similarity 172 member A IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:15,281,442...15,695,303
Ensembl chr 3:15,281,448...15,694,715
JBrowse link
G ZNFX1 zinc finger NFX1-type containing 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr24:35,932,037...35,954,170
Ensembl chr24:35,932,523...35,954,170
JBrowse link
histone H3-S10 phosphorylation involved in chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCNB1 cyclin B1 ISO (MGI:MGI:5494393|PMID:22053081) MGI PMID:22053081 MGI:MGI:5494393 NCBI chr 2:54,256,957...54,264,749 JBrowse link
inactivation of X chromosome by heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 ISO (MGI:MGI:5532809|PMID:23754746) UniProtKB PMID:23754746 MGI:MGI:5532809 NCBI chr 7:69,359,286...69,505,067
Ensembl chr 7:69,358,447...69,621,067
JBrowse link
meiotic chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G INCENP inner centromere protein IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:54,361,376...54,384,649
Ensembl chr18:54,361,378...54,384,641
JBrowse link
G MASTL microtubule associated serine/threonine kinase like ISO (PMID:23843240) AgBase PMID:23843240 NCBI chr 2:6,829,309...6,863,876
Ensembl chr 2:6,830,168...6,863,568
JBrowse link
G NCAPD2 non-SMC condensin I complex subunit D2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr27:38,475,145...38,497,818
Ensembl chr27:38,475,155...38,496,312
JBrowse link
G NCAPD3 non-SMC condensin II complex subunit D3 IEA
IBA
(PMID:21873635) UniProt
GO_Central
PMID:21873635 GO_REF:0000104 NCBI chr 5:1,021,588...1,081,846
Ensembl chr 5:1,020,690...1,081,446
JBrowse link
G NCAPH non-SMC condensin I complex subunit H IEA Ensembl GO_REF:0000107 NCBI chr17:34,428,886...34,463,140
Ensembl chr17:34,420,060...34,462,666
JBrowse link
G NCAPH2 non-SMC condensin II complex subunit H2 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr10:16,790,137...16,801,851
Ensembl chr10:16,741,761...16,801,824
JBrowse link
G SMC2 structural maintenance of chromosomes 2 IEA Ensembl GO_REF:0000107 NCBI chr11:60,091,728...60,155,295
Ensembl chr11:60,091,457...60,151,442
JBrowse link
G SMC4 structural maintenance of chromosomes 4 IEA Ensembl GO_REF:0000107 NCBI chr34:26,455,630...26,495,392
Ensembl chr34:26,456,142...26,494,725
JBrowse link
mitotic chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKAP8 A-kinase anchoring protein 8 IEA Ensembl GO_REF:0000107 NCBI chr20:46,800,917...46,817,397
Ensembl chr20:46,800,872...46,817,397
JBrowse link
G AKAP8L A-kinase anchoring protein 8 like ISO (PMID:11034899) UniProtKB PMID:11034899 NCBI chr20:46,773,585...46,800,544 JBrowse link
G CDCA5 cell division cycle associated 5 IEA Ensembl GO_REF:0000107 NCBI chr18:52,115,081...52,129,223
Ensembl chr18:52,115,203...52,120,817
JBrowse link
G CHMP1A charged multivesicular body protein 1A IEA Ensembl GO_REF:0000107 NCBI chr 5:63,897,544...63,906,515
Ensembl chr 5:63,897,594...63,905,550
JBrowse link
G NCAPD2 non-SMC condensin I complex subunit D2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr27:38,475,145...38,497,818
Ensembl chr27:38,475,155...38,496,312
JBrowse link
G NCAPD3 non-SMC condensin II complex subunit D3 IEA
IBA
(PMID:21873635) Ensembl
InterPro
GO_Central
PMID:21873635 GO_REF:0000002, GO_REF:0000107 NCBI chr 5:1,021,588...1,081,846
Ensembl chr 5:1,020,690...1,081,446
JBrowse link
G NCAPG non-SMC condensin I complex subunit G IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 3:91,279,800...91,322,679
Ensembl chr 3:91,281,077...91,322,803
JBrowse link
G NCAPH non-SMC condensin I complex subunit H IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr17:34,428,886...34,463,140
Ensembl chr17:34,420,060...34,462,666
JBrowse link
G NCAPH2 non-SMC condensin II complex subunit H2 IEA Ensembl GO_REF:0000107 NCBI chr10:16,790,137...16,801,851
Ensembl chr10:16,741,761...16,801,824
JBrowse link
G NIPBL NIPBL cohesin loading factor IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:71,583,118...71,780,986
Ensembl chr 4:71,583,732...71,780,852
JBrowse link
G NUSAP1 nucleolar and spindle associated protein 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr30:8,358,737...8,435,039
Ensembl chr30:8,396,399...8,434,179
JBrowse link
G PHF13 PHD finger protein 13 ISO (PMID:19638409) UniProtKB PMID:19638409 NCBI chr 5:60,434,218...60,441,930
Ensembl chr 5:60,433,328...60,439,672
JBrowse link
G SMC2 structural maintenance of chromosomes 2 IEA Ensembl GO_REF:0000107 NCBI chr11:60,091,728...60,155,295
Ensembl chr11:60,091,457...60,151,442
JBrowse link
G SMC4 structural maintenance of chromosomes 4 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr34:26,455,630...26,495,392
Ensembl chr34:26,456,142...26,494,725
JBrowse link
G TTN titin ISO (PMID:9548712) BHF-UCL PMID:9548712 NCBI chr36:22,146,870...22,417,858
Ensembl chr36:22,147,824...22,417,826
JBrowse link
negative regulation of chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H3-3A H3.3 histone A IEA Ensembl GO_REF:0000107 NCBI chr 7:38,797,168...38,805,417
Ensembl chr 7:38,797,448...38,805,416
JBrowse link
G H3-3B H3.3 histone B IEA Ensembl GO_REF:0000107 NCBI chr 9:4,805,655...4,808,076
Ensembl chr 9:4,805,650...4,833,503
JBrowse link
negative regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AICDA activation induced cytidine deaminase ISS UniProtKB GO_REF:0000024 NCBI chr27:37,064,107...37,073,791
Ensembl chr27:37,064,080...37,073,789
JBrowse link
G APOBEC1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 IEA Ensembl GO_REF:0000107 NCBI chr27:37,102,728...37,114,084
Ensembl chr27:37,103,016...37,114,556
JBrowse link
G TET1 tet methylcytosine dioxygenase 1 IEA Ensembl GO_REF:0000107 NCBI chr 4:19,759,661...19,898,345
Ensembl chr 4:19,768,137...19,889,907
JBrowse link
negative regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PHF2 PHD finger protein 2 IEA Ensembl GO_REF:0000107 NCBI chr 1:98,188,014...98,253,930
Ensembl chr 1:98,188,826...98,254,411
JBrowse link
G PHF8 PHD finger protein 8 ISO (PMID:20208542) UniProtKB PMID:20208542 NCBI chr  X:45,635,204...45,741,850
Ensembl chr  X:45,571,840...46,081,994
JBrowse link
nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANP32B acidic nuclear phosphoprotein 32 family member B ISO (PMID:20538007) UniProtKB PMID:20538007 NCBI chr11:55,230,017...55,272,744
Ensembl chr11:55,243,854...55,350,194
JBrowse link
G ASF1A anti-silencing function 1A histone chaperone ISO (PMID:11897662) MGI PMID:11897662 NCBI chr 1:58,821,324...58,834,935
Ensembl chr 1:58,821,521...58,946,475
JBrowse link
G ASF1B anti-silencing function 1B histone chaperone ISO (MGI:MGI:2675150|PMID:12842904) MGI PMID:12842904 MGI:MGI:2675150 NCBI chr20:48,398,615...48,406,889 JBrowse link
G ATRX ATRX chromatin remodeler ISO (PMID:20651253) UniProtKB PMID:20651253 NCBI chr  X:59,772,067...60,107,016
Ensembl chr  X:59,774,585...60,106,980
JBrowse link
G BRD2 bromodomain containing 2 ISS UniProtKB GO_REF:0000024 NCBI chr12:2,534,034...2,546,029
Ensembl chr12:2,534,034...2,546,029
JBrowse link
G CHAF1A chromatin assembly factor 1 subunit A IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:55,248,286...55,276,425
Ensembl chr20:55,248,288...55,276,900
JBrowse link
G CHAF1B chromatin assembly factor 1 subunit B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr31:31,599,840...31,620,436
Ensembl chr31:31,600,448...31,619,784
JBrowse link
G DAXX death domain associated protein IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr12:2,755,960...2,760,687
Ensembl chr12:2,755,960...2,761,340
JBrowse link
G GRWD1 glutamate rich WD repeat containing 1 IEA Ensembl GO_REF:0000107 NCBI chr 1:107,814,402...107,821,107
Ensembl chr 1:107,815,063...107,820,858
JBrowse link
G H1-0 H1.0 linker histone IEA InterPro GO_REF:0000002 NCBI chr10:26,827,748...26,829,909
Ensembl chr10:26,829,089...26,829,673
JBrowse link
G H1-2 H1.2 linker histone, cluster member IEA InterPro GO_REF:0000002 NCBI chr35:24,009,304...24,011,602 JBrowse link
G H1-4 H1.4 linker histone, cluster member IEA InterPro GO_REF:0000002
G H1-5 H1.5 linker histone, cluster member IEA InterPro GO_REF:0000002 NCBI chr35:25,045,883...25,046,775
Ensembl chr35:25,046,023...25,046,703
JBrowse link
G H1-6 H1.6 linker histone, cluster member IEA InterPro GO_REF:0000002 NCBI chr35:24,046,374...24,065,892
Ensembl chr35:24,044,188...24,047,810
JBrowse link
G H1-8 H1.8 linker histone IEA InterPro GO_REF:0000002 NCBI chr20:5,614,822...5,619,136
Ensembl chr20:5,617,001...5,624,352
JBrowse link
G H1-9 H1.9 linker histone IEA InterPro GO_REF:0000002 Ensembl chr 9:26,169,774...26,170,316 JBrowse link
G H2AB1 H2A.B variant histone 1 ISO (PMID:22795134) UniProtKB PMID:22795134 NCBI chr  X:122,910,412...122,913,373
Ensembl chr  X:122,910,968...122,913,382
JBrowse link
G H2AB3 H2A.B variant histone 3 ISO (PMID:22795134) UniProtKB PMID:22795134 NCBI chr  X:123,309,084...123,310,276 JBrowse link
G H2BC1 H2B clustered histone 1 ISO (MGI:MGI:5502464|PMID:23884607)
(MGI:MGI:3702345|PMID:17261847)
UniProtKB
MGI
PMID:17261847, PMID:23884607 MGI:MGI:3702345, MGI:MGI:5502464 NCBI chr35:23,677,952...23,678,432 JBrowse link
G H2BC13 H2B clustered histone 13 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:24,999,666...25,000,124
Ensembl chr35:24,999,692...25,000,072
JBrowse link
G H2BC14 H2B clustered histone 14 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:25,006,472...25,035,326
Ensembl chr35:25,006,510...25,006,890
JBrowse link
G H2BC15 H2B clustered histone 15 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:25,031,173...25,035,326
Ensembl chr35:25,031,264...25,031,644
JBrowse link
G H2BC18 H2B clustered histone 18 IBA (PMID:21873635) GO_Central PMID:21873635 Ensembl chr17:59,093,578...59,120,934 JBrowse link
G H2BC2 H2B clustered histone 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:23,690,580...23,691,133
Ensembl chr35:23,690,707...23,691,090
JBrowse link
G H2BC3 H2B clustered histone 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:24,001,132...24,001,599 JBrowse link
G H2BC4 H2B clustered histone 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:24,062,068...24,066,934
Ensembl chr35:24,066,399...24,066,779
JBrowse link
G H2BC5 H2B clustered histone 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:24,093,447...24,102,443
Ensembl chr35:24,131,296...24,131,676
Ensembl chr35:24,131,296...24,131,676
Ensembl chr35:24,131,296...24,131,676
Ensembl chr35:24,131,296...24,131,676
Ensembl chr35:24,131,296...24,131,676
Ensembl chr35:24,131,296...24,131,676
JBrowse link
G H2BC6 H2B clustered histone 6 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:24,115,034...24,115,551
Ensembl chr35:24,131,296...24,131,676
Ensembl chr35:24,131,296...24,131,676
Ensembl chr35:24,131,296...24,131,676
Ensembl chr35:24,131,296...24,131,676
Ensembl chr35:24,131,296...24,131,676
Ensembl chr35:24,131,296...24,131,676
JBrowse link
G H2BC8 H2B clustered histone 8 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:24,130,229...24,131,736
Ensembl chr35:24,131,296...24,131,676
JBrowse link
G H2BC9 H2B clustered histone 9 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:24,178,907...24,179,379
Ensembl chr35:24,178,933...24,179,313
JBrowse link
G H2BU1 H2B.U histone 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:603,716...604,222
Ensembl chr14:603,816...604,196
JBrowse link
G H2BU2 H2B.U histone 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:596,292...599,815
Ensembl chr14:599,408...599,788
JBrowse link
G H2BW1 H2B.W histone 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:77,312,494...77,339,851
Ensembl chr  X:77,312,498...77,340,383
JBrowse link
G H3-3A H3.3 histone A ISO (PMID:21636898)
(PMID:25615412)
UniProtKB PMID:21636898, PMID:25615412 NCBI chr 7:38,797,168...38,805,417
Ensembl chr 7:38,797,448...38,805,416
JBrowse link
G H3-3B H3.3 histone B ISO (PMID:25615412)
(PMID:21636898)
UniProtKB PMID:21636898, PMID:25615412 NCBI chr 9:4,805,655...4,808,076
Ensembl chr 9:4,805,650...4,833,503
JBrowse link
G H3-4 H3.4 histone ISO (PMID:20498094)
(PMID:25615412)
UniProtKB PMID:20498094, PMID:25615412 NCBI chr14:627,178...627,587
Ensembl chr14:627,190...627,581
JBrowse link
G H3C1 H3 clustered histone 1 ISO (PMID:25615412)
(PMID:20498094), (PMID:21636898), (PMID:24699735)
UniProtKB PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr35:23,975,775...23,977,803
Ensembl chr35:23,977,201...23,977,611
JBrowse link
G H3C12 H3 clustered histone 12 ISO (PMID:25615412)
(PMID:20498094), (PMID:21636898), (PMID:24699735)
UniProtKB PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr35:25,058,040...25,060,132
Ensembl chr35:25,059,288...25,059,698
JBrowse link
G H3C13 H3 clustered histone 13 IEA Ensembl GO_REF:0000107 NCBI chr17:59,121,020...59,129,410
Ensembl chr17:59,121,976...59,122,386
JBrowse link
G H3C14 H3 clustered histone 14 ISO (PMID:21636898), (PMID:25615412) UniProtKB PMID:21636898, PMID:25615412 NCBI chr17:59,145,128...59,146,186 JBrowse link
G H3C15 H3 clustered histone 15 ISO (PMID:21636898), (PMID:25615412) UniProtKB PMID:21636898, PMID:25615412 NCBI chr17:59,158,336...59,183,035 JBrowse link
G H3C2 H3 clustered histone 2 ISO (PMID:25615412)
(PMID:20498094), (PMID:21636898), (PMID:24699735)
UniProtKB PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr35:23,989,431...23,989,871 JBrowse link
G H3C7 H3 clustered histone 7 ISO (PMID:25615412)
(PMID:20498094), (PMID:21636898), (PMID:24699735)
UniProtKB PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr35:24,174,818...24,177,957
Ensembl chr35:24,177,521...24,177,931
JBrowse link
G H4-16 H4 histone 16 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr27:31,839,899...31,840,463
Ensembl chr27:31,840,011...31,840,322
JBrowse link
G H4C11 H4 clustered histone 11 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:25,009,935...25,012,013
Ensembl chr35:25,011,693...25,011,998
JBrowse link
G H4C13 H4 clustered histone 13 ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProtKB PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr35:25,015,108...25,051,906 JBrowse link
G H4C14 H4 clustered histone 14 ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProtKB PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr17:59,129,585...59,130,048
Ensembl chr17:59,129,682...59,129,993
JBrowse link
G H4C7 H4 clustered histone 7 IBA (PMID:21873635) GO_Central PMID:21873635 Ensembl chr35:24,174,554...24,174,829 JBrowse link
G H4C8 H4 clustered histone 8 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:24,174,401...24,194,848
Ensembl chr27:31,840,011...31,840,322
Ensembl chr17:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
Ensembl chr35:31,840,011...31,840,322
JBrowse link
G H4C9 H4 clustered histone 9 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:24,555,412...24,556,402
Ensembl chr35:24,556,015...24,556,326
JBrowse link
G HMGB1 high mobility group box 1 ISO (PMID:2465778) AgBase PMID:2465778 NCBI chr25:9,431,223...9,558,167
Ensembl chr25:9,431,218...9,558,165
JBrowse link
G HMGB2 high mobility group box 2 ISS AgBase GO_REF:0000024 NCBI chr25:23,939,024...23,941,720
Ensembl chr25:23,939,027...23,941,606
JBrowse link
G HP1BP3 heterochromatin protein 1 binding protein 3 IEA InterPro GO_REF:0000002 NCBI chr 2:78,164,239...78,203,032
Ensembl chr 2:78,164,173...78,201,555
JBrowse link
G KAT6A lysine acetyltransferase 6A IEA InterPro GO_REF:0000002 NCBI chr16:23,604,629...23,717,047
Ensembl chr16:23,604,200...23,724,252
JBrowse link
G KAT6B lysine acetyltransferase 6B IEA InterPro GO_REF:0000002 NCBI chr 4:25,131,580...25,303,355
Ensembl chr 4:25,131,844...25,301,825
JBrowse link
G LOC111094860 protein SET-like IEA InterPro GO_REF:0000002 NCBI chr  X:62,802,664...62,803,091 JBrowse link
G LOC403555 SET translocation IEA InterPro GO_REF:0000002 NCBI chr  X:91,851,844...91,869,284 JBrowse link
G MACROH2A1 macroH2A.1 histone IEA UniProtKB GO_REF:0000104 NCBI chr11:23,369,957...23,448,235
Ensembl chr11:23,370,300...23,438,219
JBrowse link
G MACROH2A2 macroH2A.2 histone IEA UniProtKB GO_REF:0000104 NCBI chr 4:21,057,935...21,087,097
Ensembl chr 4:21,057,947...21,086,730
JBrowse link
G MCM2 minichromosome maintenance complex component 2 IEA Ensembl GO_REF:0000107 NCBI chr20:1,682,928...1,702,689
Ensembl chr20:1,682,886...1,702,366
JBrowse link
G NAA60 N-alpha-acetyltransferase 60, NatF catalytic subunit ISO (PMID:21981917) UniProtKB PMID:21981917 NCBI chr 6:37,759,233...37,784,224
Ensembl chr 6:37,761,497...37,793,290
JBrowse link
G NAP1L1 nucleosome assembly protein 1 like 1 IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr15:19,141,803...19,175,576
Ensembl chr15:19,143,284...19,175,581
JBrowse link
G NAP1L2 nucleosome assembly protein 1 like 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:57,085,962...57,088,235
Ensembl chr  X:57,086,769...57,088,157
JBrowse link
G NAP1L3 nucleosome assembly protein 1 like 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:69,231,981...69,233,827
Ensembl chr  X:69,232,078...69,233,499
JBrowse link
G NAP1L4 nucleosome assembly protein 1 like 4 IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr18:46,910,366...46,946,710
Ensembl chr18:46,911,278...46,945,525
JBrowse link
G NAP1L5 nucleosome assembly protein 1 like 5 IEA InterPro GO_REF:0000002 NCBI chr32:11,956,795...11,958,754
Ensembl chr32:11,958,122...11,958,658
JBrowse link
G NASP nuclear autoantigenic sperm protein ISO (PMID:25615412) UniProtKB PMID:25615412 NCBI chr15:14,742,008...14,782,186
Ensembl chr15:14,742,012...14,808,592
JBrowse link
G NPM1 nucleophosmin 1 ISO (PMID:11602260) UniProtKB PMID:11602260 NCBI chr 4:40,756,464...40,770,174
Ensembl chr 4:40,756,465...40,770,175
JBrowse link
G PADI4 peptidyl arginine deiminase 4 ISO (MGI:MGI:5545819|PMID:24463520) UniProtKB PMID:24463520 MGI:MGI:5545819 NCBI chr 2:80,912,814...80,942,767
Ensembl chr 2:80,905,391...80,993,973
JBrowse link
G RSF1 remodeling and spacing factor 1 IEA Ensembl GO_REF:0000107 NCBI chr21:20,968,356...21,124,308
Ensembl chr21:20,968,193...21,119,642
JBrowse link
G SART3 spliceosome associated factor 3, U4/U6 recycling protein IEA Ensembl GO_REF:0000107 NCBI chr26:18,308,065...18,345,903
Ensembl chr26:18,308,733...18,345,353
JBrowse link
G SET SET nuclear proto-oncogene IEA InterPro GO_REF:0000002 NCBI chr 9:54,896,464...54,907,698 JBrowse link
G SHPRH SNF2 histone linker PHD RING helicase IEA InterPro GO_REF:0000002 NCBI chr 1:37,076,318...37,170,664
Ensembl chr 1:37,077,949...37,163,041
JBrowse link
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 IEA Ensembl GO_REF:0000107 NCBI chr15:42,731,147...42,771,577
Ensembl chr15:42,731,426...42,770,624
JBrowse link
G SMYD3 SET and MYND domain containing 3 IEA Ensembl GO_REF:0000107 NCBI chr 7:36,561,080...37,250,336
Ensembl chr 7:36,565,901...37,250,578
JBrowse link
G SOX9 SRY-box transcription factor 9 ISS UniProtKB GO_REF:0000024 NCBI chr 9:8,275,049...8,278,172
Ensembl chr 9:8,275,049...8,278,172
JBrowse link
G SPTY2D1 SPT2 chromatin protein domain containing 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr21:41,021,317...41,042,955
Ensembl chr21:41,023,629...41,042,492
JBrowse link
G TSPYL1 TSPY like 1 IEA InterPro GO_REF:0000002 NCBI chr12:71,933,904...71,937,508
Ensembl chr12:71,935,792...71,937,285
JBrowse link
G TSPYL2 TSPY like 2 IEA InterPro GO_REF:0000002 NCBI chr  X:45,001,112...45,008,023
Ensembl chr  X:45,001,100...45,007,869
JBrowse link
G TSPYL5 TSPY like 5 IEA InterPro GO_REF:0000002 NCBI chr29:41,500,395...41,503,975
Ensembl chr29:41,503,312...41,503,956
JBrowse link
nucleosome positioning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTCF CCCTC-binding factor IEA Ensembl GO_REF:0000107 NCBI chr 5:81,808,512...81,863,811
Ensembl chr 5:81,809,393...81,858,655
JBrowse link
G H1-2 H1.2 linker histone, cluster member IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:24,009,304...24,011,602 JBrowse link
G H1-4 H1.4 linker histone, cluster member IBA (PMID:21873635) GO_Central PMID:21873635
G H1-6 H1.6 linker histone, cluster member IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr35:24,046,374...24,065,892
Ensembl chr35:24,044,188...24,047,810
JBrowse link
G H1-8 H1.8 linker histone IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:5,614,822...5,619,136
Ensembl chr20:5,617,001...5,624,352
JBrowse link
G H1-9 H1.9 linker histone IBA (PMID:21873635) GO_Central PMID:21873635 Ensembl chr 9:26,169,774...26,170,316 JBrowse link
G PAF1 PAF1 homolog, Paf1/RNA polymerase II complex component IEA Ensembl GO_REF:0000107 NCBI chr 1:113,828,219...113,832,747
Ensembl chr 1:113,828,007...113,832,735
JBrowse link
G RSF1 remodeling and spacing factor 1 IEA Ensembl GO_REF:0000107 NCBI chr21:20,968,356...21,124,308
Ensembl chr21:20,968,193...21,119,642
JBrowse link
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:42,731,147...42,771,577
Ensembl chr15:42,731,426...42,770,624
JBrowse link
pericentric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CENPV centromere protein V IEA Ensembl GO_REF:0000107 NCBI chr 5:39,568,115...39,582,900
Ensembl chr 5:39,567,790...39,582,897
JBrowse link
G DICER1 dicer 1, ribonuclease III ISO (MGI:MGI:3528782|PMID:15713842) MGI PMID:15713842 MGI:MGI:3528782 NCBI chr 8:63,970,245...64,029,438
Ensembl chr 8:63,972,027...64,019,879
JBrowse link
G H3-3A H3.3 histone A IEA Ensembl GO_REF:0000107 NCBI chr 7:38,797,168...38,805,417
Ensembl chr 7:38,797,448...38,805,416
JBrowse link
G H3-3B H3.3 histone B IEA Ensembl GO_REF:0000107 NCBI chr 9:4,805,655...4,808,076
Ensembl chr 9:4,805,650...4,833,503
JBrowse link
G HELLS helicase, lymphoid specific IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr28:8,660,866...8,705,570
Ensembl chr28:8,661,008...8,705,580
JBrowse link
positive regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATF7IP activating transcription factor 7 interacting protein IEA Ensembl GO_REF:0000107 NCBI chr27:32,082,615...32,194,954
Ensembl chr27:32,086,675...32,177,364
JBrowse link
G DNMT1 DNA methyltransferase 1 IEA Ensembl GO_REF:0000107 NCBI chr20:50,872,213...50,928,352
Ensembl chr20:50,879,527...50,928,029
JBrowse link
G MORC2 MORC family CW-type zinc finger 2 IEA Ensembl GO_REF:0000107 NCBI chr26:23,951,704...23,993,620
Ensembl chr26:23,953,130...23,992,431
JBrowse link
G MPHOSPH8 M-phase phosphoprotein 8 IEA Ensembl GO_REF:0000107 NCBI chr25:18,392,706...18,443,241
Ensembl chr25:18,392,409...18,443,241
JBrowse link
G PPHLN1 periphilin 1 IEA Ensembl GO_REF:0000107 NCBI chr27:11,445,893...11,590,168
Ensembl chr27:11,443,394...11,590,107
JBrowse link
G RESF1 retroelement silencing factor 1 ISO (MGI:MGI:6271895|PMID:29728365) UniProt PMID:29728365 MGI:MGI:6271895 NCBI chr27:16,829,611...16,856,960
Ensembl chr27:16,829,968...16,839,166
JBrowse link
G SETDB1 SET domain bifurcated histone lysine methyltransferase 1 IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr17:60,035,819...60,069,721
Ensembl chr17:60,037,379...60,069,551
JBrowse link
G SETDB2 SET domain bifurcated histone lysine methyltransferase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr22:2,263,990...2,319,249
Ensembl chr22:2,244,507...2,319,158
JBrowse link
G TASOR transcription activation suppressor IEA Ensembl GO_REF:0000107 NCBI chr20:33,665,231...33,713,264
Ensembl chr20:33,646,000...33,712,936
JBrowse link
G TRIM28 tripartite motif containing 28 ISO (MGI:MGI:5440670|PMID:20164836)
(PMID:24623306)
UniProt
UniProtKB
PMID:20164836, PMID:24623306 MGI:MGI:5440670 NCBI chr 1:99,408,920...99,415,432
Ensembl chr 1:99,408,925...99,415,146
JBrowse link
G ZNF304 zinc finger protein 304 ISO (PMID:24623306) UniProtKB PMID:24623306 NCBI chr 1:100,739,792...100,748,656
Ensembl chr 1:100,740,374...100,768,032
JBrowse link
positive regulation of heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TPR translocated promoter region, nuclear basket protein IEA Ensembl GO_REF:0000107 NCBI chr 7:19,376,951...19,442,368
Ensembl chr 7:19,376,975...19,442,303
JBrowse link
positive regulation of subtelomeric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SIRT6 sirtuin 6 IEA Ensembl GO_REF:0000107 NCBI chr20:55,412,989...55,424,944
Ensembl chr20:55,412,646...55,424,944
JBrowse link
rDNA condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NIPBL NIPBL cohesin loading factor IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:71,583,118...71,780,986
Ensembl chr 4:71,583,732...71,780,852
JBrowse link
rDNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAZ2A bromodomain adjacent to zinc finger domain 2A ISO (MGI:MGI:4462332|PMID:20168299)
(MGI:MGI:3587127|PMID:16085498), (MGI:MGI:3653583|PMID:16678107), (MGI:MGI:3852313|PMID:12198165), (MGI:MGI:3852588|PMID:19578370)
MGI PMID:12198165, PMID:16085498, PMID:16678107, PMID:19578370, PMID:20168299 MGI:MGI:3587127, MGI:MGI:3653583, MGI:MGI:3852313, MGI:MGI:3852588, MGI:MGI:4462332 NCBI chr10:834,018...868,817
Ensembl chr10:836,465...863,874
JBrowse link
G BEND3 BEN domain containing 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:64,302,403...64,324,396
Ensembl chr12:64,306,140...64,322,725
JBrowse link
G RRP8 ribosomal RNA processing 8 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr21:29,907,555...29,917,142
Ensembl chr21:29,907,361...29,918,408
JBrowse link
G SIRT1 sirtuin 1 ISO (PMID:18485871) UniProtKB PMID:18485871 NCBI chr 4:19,188,616...19,220,031
Ensembl chr 4:19,188,675...19,218,279
JBrowse link
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 IEA Ensembl GO_REF:0000107 NCBI chr15:42,731,147...42,771,577
Ensembl chr15:42,731,426...42,770,624
JBrowse link
G SUV39H1 suppressor of variegation 3-9 homolog 1 IEA Ensembl GO_REF:0000107 NCBI chr  X:41,894,623...41,907,854
Ensembl chr  X:41,893,045...41,906,403
JBrowse link
G UBTF upstream binding transcription factor ISO (MGI:MGI:3836497|PMID:19103806) MGI PMID:19103806 MGI:MGI:3836497 NCBI chr 9:19,177,778...19,189,805
Ensembl chr 9:19,179,174...19,189,181
JBrowse link
regulation of chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SPTY2D1 SPT2 chromatin protein domain containing 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr21:41,021,317...41,042,955
Ensembl chr21:41,023,629...41,042,492
JBrowse link
regulation of chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCNB1 cyclin B1 ISO positive regulation RGD PMID:15291744 RGD:1578405 NCBI chr 2:54,256,957...54,264,749 JBrowse link
G MCPH1 microcephalin 1 IEA Ensembl GO_REF:0000107 NCBI chr16:58,306,761...58,529,090
Ensembl chr16:58,295,280...58,529,433
JBrowse link
G WAPL WAPL cohesin release factor IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 4:34,219,644...34,297,456
Ensembl chr 4:34,219,645...34,302,839
JBrowse link
regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POU5F1 POU class 5 homeobox 1 ISO (PMID:19736317) BHF-UCL PMID:19736317 NCBI chr12:860,702...866,099 JBrowse link
regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MACROH2A1 macroH2A.1 histone NOT ISO (PMID:24071584) UniProtKB PMID:24071584 NCBI chr11:23,369,957...23,448,235
Ensembl chr11:23,370,300...23,438,219
JBrowse link
G NAA40 N-alpha-acetyltransferase 40, NatD catalytic subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:53,054,662...53,077,156
Ensembl chr18:53,048,903...53,069,496
JBrowse link
senescence-associated heterochromatin focus assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HMGA1 high mobility group AT-hook 1 ISS
IEA
UniProtKB
Ensembl
GO_REF:0000024, GO_REF:0000107 NCBI chr12:3,528,818...3,538,533
Ensembl chr12:3,533,102...3,538,533
JBrowse link
G HMGA2 high mobility group AT-hook 2 ISO (PMID:16901784) UniProtKB PMID:16901784 NCBI chr10:8,348,101...8,491,435 JBrowse link
sperm chromatin condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FSHR follicle stimulating hormone receptor ISO (MGI:MGI:1855818|PMID:10775161) MGI PMID:10775161 MGI:MGI:1855818 NCBI chr10:50,765,591...50,938,643
Ensembl chr10:50,770,995...50,938,474
JBrowse link
G H1-7 H1.7 linker histone ISO (MGI:MGI:3531623|PMID:15710904) UniProtKB PMID:15710904 MGI:MGI:3531623 NCBI chr27:6,389,797...6,396,021
Ensembl chr27:6,389,908...6,391,174
JBrowse link
G LOC102152531 synaptonemal complex protein 3-like ISO (MGI:MGI:5315075|PMID:22164254) MGI PMID:22164254 MGI:MGI:5315075 NCBI chr  X:121,060,275...121,074,166 JBrowse link
G SELENOF selenoprotein F ISO RGD PMID:11344099 RGD:728803 NCBI chr 6:61,299,310...61,341,035
Ensembl chr 6:61,299,310...61,341,035
JBrowse link
G SYCP1 synaptonemal complex protein 1 IEA Ensembl GO_REF:0000107 NCBI chr17:52,538,909...52,681,495
Ensembl chr17:52,539,615...52,648,133
JBrowse link
G TSSK6 testis specific serine kinase 6 IEA Ensembl GO_REF:0000107 NCBI chr20:43,730,769...43,732,179
Ensembl chr20:43,730,907...43,731,728
JBrowse link
spermatogenesis, exchange of chromosomal proteins term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHD5 chromodomain helicase DNA binding protein 5 ISO (MGI:MGI:5559810|PMID:24252660) UniProtKB PMID:24252660 MGI:MGI:5559810 NCBI chr 5:60,022,451...60,080,663
Ensembl chr 5:60,025,602...60,081,148
JBrowse link
G FSHR follicle stimulating hormone receptor IEA Ensembl GO_REF:0000107 NCBI chr10:50,765,591...50,938,643
Ensembl chr10:50,770,995...50,938,474
JBrowse link
G H2BC1 H2B clustered histone 1 ISO (MGI:MGI:5502464|PMID:23884607) UniProtKB PMID:23884607 MGI:MGI:5502464 NCBI chr35:23,677,952...23,678,432 JBrowse link
G LOC102152531 synaptonemal complex protein 3-like ISO (PMID:14643120) UniProtKB PMID:14643120 NCBI chr  X:121,060,275...121,074,166 JBrowse link
G PIWIL1 piwi like RNA-mediated gene silencing 1 IEA Ensembl GO_REF:0000107 NCBI chr26:1,760,544...1,791,204
Ensembl chr26:1,761,149...1,791,185
JBrowse link
G PSME4 proteasome activator subunit 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:54,873,093...54,960,030
Ensembl chr10:54,875,177...54,960,035
JBrowse link
G RNF8 ring finger protein 8 ISO (MGI:MGI:5905675|PMID:28552346) UniProtKB PMID:28552346 MGI:MGI:5905675 NCBI chr12:6,380,365...6,415,407
Ensembl chr12:6,292,459...6,415,382
JBrowse link
G TNP1 transition protein 1 IEA Ensembl GO_REF:0000107 NCBI chr37:23,742,875...23,743,417
Ensembl chr37:23,727,538...23,743,365
JBrowse link
G TNP2 transition protein 2 ISS UniProtKB GO_REF:0000024 NCBI chr 6:31,498,361...31,498,740
Ensembl chr 6:31,426,715...31,499,842
JBrowse link
subtelomeric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H3-3A H3.3 histone A IEA Ensembl GO_REF:0000107 NCBI chr 7:38,797,168...38,805,417
Ensembl chr 7:38,797,448...38,805,416
JBrowse link
G H3-3B H3.3 histone B IEA Ensembl GO_REF:0000107 NCBI chr 9:4,805,655...4,808,076
Ensembl chr 9:4,805,650...4,833,503
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16162
    cellular process 15439
      cellular component organization or biogenesis 6022
        cellular component organization 5853
          organelle organization 3700
            chromosome organization 1110
              DNA conformation change 266
                DNA packaging 181
                  chromatin assembly + 140
                  chromosome condensation + 35
                  nonrepetitive DNA condensation 0
                  nucleoid DNA packaging + 0
                  rDNA condensation 1
                  sperm chromatin condensation + 13
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.