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ONTOLOGY REPORT - ANNOTATIONS


Term:DNA packaging
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Accession:GO:0006323 term browser browse the term
Definition:Any process in which DNA and associated proteins are formed into a compact, orderly structure.
Synonyms:exact_synonym: DNA condensation;   DNA organisation;   DNA organization


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DNA packaging term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H2al1a H2A histone family member L1A IDA (MGI:MGI:3702345|PMID:17261847) MGI PMID:17261847 MGI:MGI:3702345 NCBI chr  X:11,299,257...11,299,757
Ensembl chr  X:11,299,257...11,299,757
JBrowse link
G H2al2a H2A histone family member L2A IDA (MGI:MGI:3702345|PMID:17261847) MGI PMID:17261847 MGI:MGI:3702345 NCBI chr 2:17,996,417...17,996,958
Ensembl chr 2:17,996,417...17,996,958
JBrowse link
G H2bc1 H2B clustered histone 1 IDA (MGI:MGI:3702345|PMID:17261847) MGI PMID:17261847 MGI:MGI:3702345 NCBI chr13:23,933,725...23,934,156
Ensembl chr13:23,933,773...23,934,156
JBrowse link
G Mta2 metastasis-associated gene family, member 2 TAS (MGI:MGI:1342369|PMID:10444591) MGI PMID:10444591 MGI:MGI:1342369 NCBI chr19:8,941,920...8,952,300
Ensembl chr19:8,941,875...8,952,303
JBrowse link
G Prm2 protamine 2 IEA UniProtKB GO_REF:0000002, MGI:MGI:2152098 NCBI chr16:10,791,377...10,792,105
Ensembl chr16:10,791,380...10,796,134
JBrowse link
G Smarcc1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 TAS (MGI:MGI:2153331|PMID:11604513) MGI PMID:11604513 MGI:MGI:2153331 NCBI chr 9:110,132,024...110,240,178
Ensembl chr 9:110,117,708...110,240,178
JBrowse link
G Suv39h1 suppressor of variegation 3-9 1 TAS (MGI:MGI:1927682|PMID:11094092) MGI PMID:11094092 MGI:MGI:1927682 NCBI chr  X:8,061,171...8,074,760
Ensembl chr  X:8,061,171...8,074,760
JBrowse link
apoptotic chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acin1 apoptotic chromatin condensation inducer 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr14:54,642,161...54,686,965
Ensembl chr14:54,642,161...54,686,931
JBrowse link
G Dffb DNA fragmentation factor, beta subunit ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 4:153,964,447...153,975,121
Ensembl chr 4:153,964,449...153,975,126
JBrowse link
G Ern2 endoplasmic reticulum (ER) to nucleus signalling 2 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 7:122,169,893...122,186,239
Ensembl chr 7:122,169,893...122,186,207
JBrowse link
G Gper1 G protein-coupled estrogen receptor 1 ISO RGD GO_REF:0000096, MGI:MGI:4417868 NCBI chr 5:139,423,150...139,427,800
Ensembl chr 5:139,423,151...139,427,800
JBrowse link
G Top2a topoisomerase (DNA) II alpha ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr11:98,992,947...99,024,199
Ensembl chr11:98,992,943...99,024,189
JBrowse link
CENP-A containing nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cenpp centromere protein P IEA UniProtKB GO_REF:0000002, MGI:MGI:2152098 NCBI chr13:49,464,025...49,652,950
Ensembl chr13:49,464,023...49,652,785
JBrowse link
G Hjurp Holliday junction recognition protein ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 1:88,258,856...88,277,644
Ensembl chr 1:88,262,471...88,277,633
JBrowse link
G Itgb3bp integrin beta 3 binding protein (beta3-endonexin) IEA UniProtKB GO_REF:0000002, MGI:MGI:2152098 NCBI chr 4:99,767,406...99,829,215
Ensembl chr 4:99,765,402...99,929,813
JBrowse link
G Mis18a MIS18 kinetochore protein A IMP
IBA
(MGI:MGI:5438906|PMID:22516971)
(MGI:MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:21873635, PMID:22516971 MGI:MGI:5438906, MGI:MGI:6201960 NCBI chr16:90,719,312...90,727,371
Ensembl chr16:90,719,312...90,727,404
JBrowse link
G Nasp nuclear autoantigenic sperm protein (histone-binding) IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 4:116,601,052...116,628,676
Ensembl chr 4:116,601,052...116,627,941
JBrowse link
G Oip5 Opa interacting protein 5 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 2:119,609,532...119,618,505
Ensembl chr 2:119,609,512...119,618,469
JBrowse link
chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdan1 congenital dyserythropoietic anemia, type I (human) ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 2:120,716,154...120,731,517
Ensembl chr 2:120,716,154...120,850,128
JBrowse link
G Chaf1a chromatin assembly factor 1, subunit A (p150) ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr17:56,040,416...56,068,026
Ensembl chr17:56,040,439...56,072,289
JBrowse link
G Chaf1b chromatin assembly factor 1, subunit B (p60) ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr16:93,883,900...93,906,115
Ensembl chr16:93,883,901...93,906,115
JBrowse link
G Hmgb1 high mobility group box 1 IDA (MGI:MGI:3807115|PMID:18650382) UniProt PMID:18650382 MGI:MGI:3807115 NCBI chr 5:149,046,702...149,053,057
Ensembl chr 5:149,046,702...149,184,489
JBrowse link
G M1ap meiosis 1 associated protein NAS (MGI:MGI:1330413|PMID:9927484) UniProtKB PMID:9927484 MGI:MGI:1330413 NCBI chr 6:82,946,908...83,030,309
Ensembl chr 6:82,946,902...83,030,309
JBrowse link
G Noc2l NOC2 like nucleolar associated transcriptional repressor ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 4:156,234,655...156,247,616
Ensembl chr 4:156,235,919...156,247,616
JBrowse link
G Rbbp4 retinoblastoma binding protein 4, chromatin remodeling factor ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 4:129,307,100...129,335,370
Ensembl chr 4:129,307,100...129,335,370
JBrowse link
G Trp53 transformation related protein 53 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr11:69,580,348...69,591,873
Ensembl chr11:69,580,359...69,591,873
JBrowse link
chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Banf1 BAF nuclear assembly factor 1 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr19:5,364,633...5,366,876
Ensembl chr19:5,364,638...5,367,168
JBrowse link
G Banf2 BANF family member 2 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 2:144,033,102...144,073,979
Ensembl chr 2:144,033,059...144,073,979
JBrowse link
G Cdk1 cyclin-dependent kinase 1 ISO RGD GO_REF:0000096, MGI:MGI:4417868 NCBI chr10:69,335,146...69,352,912
Ensembl chr10:69,335,146...69,352,938
JBrowse link
G H1f0 H1.0 linker histone IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr15:79,028,212...79,030,504
Ensembl chr15:79,028,450...79,030,504
JBrowse link
G H1f1 H1.1 linker histone, cluster member IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr13:23,763,668...23,764,412
Ensembl chr13:23,763,666...23,764,406
JBrowse link
G H1f10 H1.10 linker histone IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 6:87,980,421...87,981,482
Ensembl chr 6:87,980,421...87,981,637
JBrowse link
G H1f2 H1.2 linker histone, cluster member IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr13:23,738,807...23,739,531
Ensembl chr13:23,738,808...23,740,367
JBrowse link
G H1f3 H1.3 linker histone, cluster member IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr13:23,555,032...23,555,807
Ensembl chr13:23,553,262...23,560,686
JBrowse link
G H1f4 H1.4 linker histone, cluster member IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr13:23,621,777...23,622,558
Ensembl chr13:23,620,629...23,622,558
JBrowse link
G H1f5 H1.5 linker histone, cluster member IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr13:21,779,832...21,780,625
Ensembl chr13:21,779,883...21,780,625
JBrowse link
G H1f6 H1.6 linker histone, cluster member IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr13:23,695,811...23,696,545
Ensembl chr13:23,695,814...23,696,725
JBrowse link
G H1f7 H1.7 linker histone TAS (MGI:MGI:3808932|PMID:18689890) MGI PMID:18689890 MGI:MGI:3808932 NCBI chr15:98,255,982...98,257,307
Ensembl chr15:98,255,986...98,257,293
JBrowse link
G H1f8 H1.8 linker histone IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 6:115,944,931...115,950,242
Ensembl chr 6:115,944,938...115,950,236
JBrowse link
G H1f9 H1.9 linker histone TAS
IBA
(MGI:MGI:3808932|PMID:18689890)
(MGI:MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:18689890, PMID:21873635 MGI:MGI:3808932, MGI:MGI:6201960 NCBI chr11:94,967,593...94,968,456
Ensembl chr11:94,967,593...94,968,456
JBrowse link
G Hmga2 high mobility group AT-hook 2 IEA UniProtKB GO_REF:0000004, MGI:MGI:1354194 NCBI chr10:120,361,268...120,476,469
Ensembl chr10:120,361,275...120,476,469
JBrowse link
G Ncapd2 non-SMC condensin I complex, subunit D2 IEA UniProtKB GO_REF:0000002, GO_REF:0000004, MGI:MGI:1354194, MGI:MGI:2152098 NCBI chr 6:125,168,007...125,192,100
Ensembl chr 6:125,168,007...125,191,701
JBrowse link
G Ncapd3 non-SMC condensin II complex, subunit D3 IEA UniProtKB GO_REF:0000004, MGI:MGI:1354194 NCBI chr 9:27,030,165...27,096,522
Ensembl chr 9:27,030,175...27,095,315
JBrowse link
G Ncapg2 non-SMC condensin II complex, subunit G2 IEA UniProtKB GO_REF:0000004, MGI:MGI:1354194 NCBI chr12:116,405,351...116,463,532
Ensembl chr12:116,405,402...116,463,731
JBrowse link
G Ncaph non-SMC condensin I complex, subunit H IEA UniProtKB GO_REF:0000004, MGI:MGI:1354194 NCBI chr 2:127,103,809...127,133,954
Ensembl chr 2:127,103,809...127,133,954
JBrowse link
G Ncaph2 non-SMC condensin II complex, subunit H2 IEA UniProtKB GO_REF:0000002, GO_REF:0000004, MGI:MGI:1354194, MGI:MGI:2152098 NCBI chr15:89,355,719...89,372,850
Ensembl chr15:89,355,719...89,372,826
JBrowse link
G Phf13 PHD finger protein 13 IEA UniProtKB GO_REF:0000004, MGI:MGI:1354194 NCBI chr 4:151,989,631...151,996,179
Ensembl chr 4:151,989,633...151,996,258
JBrowse link
G Prm1 protamine 1 TAS (MGI:MGI:57381|PMID:3676400) MGI PMID:3676400 MGI:MGI:57381 NCBI chr16:10,796,332...10,796,823
Ensembl chr16:10,796,326...10,805,839
JBrowse link
G Prm2 protamine 2 TAS (MGI:MGI:57381|PMID:3676400) MGI PMID:3676400 MGI:MGI:57381 NCBI chr16:10,791,377...10,792,105
Ensembl chr16:10,791,380...10,796,134
JBrowse link
G Prm3 protamine 3 IEA UniProtKB GO_REF:0000004, MGI:MGI:1354194 NCBI chr16:10,790,508...10,790,914
Ensembl chr16:10,790,505...10,790,914
JBrowse link
G Smc2 structural maintenance of chromosomes 2 IEA UniProtKB GO_REF:0000004, MGI:MGI:1354194 NCBI chr 4:52,439,221...52,488,365
Ensembl chr 4:52,439,243...52,488,260
JBrowse link
G Smc4 structural maintenance of chromosomes 4 IEA UniProtKB GO_REF:0000004, MGI:MGI:1354194 NCBI chr 3:69,004,738...69,034,623
Ensembl chr 3:69,004,738...69,034,623
JBrowse link
G Smc5 structural maintenance of chromosomes 5 IMP (MGI:MGI:5882483|PMID:26919979) MGI PMID:26919979 MGI:MGI:5882483 NCBI chr19:23,206,441...23,273,922
Ensembl chr19:23,206,451...23,273,897
JBrowse link
G Top2a topoisomerase (DNA) II alpha IMP (MGI:MGI:2158879|PMID:11835580) MGI PMID:11835580 MGI:MGI:2158879 NCBI chr11:98,992,947...99,024,199
Ensembl chr11:98,992,943...99,024,189
JBrowse link
DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt3a DNA methyltransferase 3A IDA
IGI
(MGI:MGI:3611125|PMID:16322236)
(MGI:MGI:3768461|PMID:17938196)
MGI PMID:16322236, PMID:17938196 MGI:MGI:3611125, MGI:MGI:3768461 NCBI chr12:3,801,559...3,914,443
Ensembl chr12:3,806,007...3,914,443
JBrowse link
G Dnmt3b DNA methyltransferase 3B IGI (MGI:MGI:3768461|PMID:17938196) MGI PMID:17938196 MGI:MGI:3768461 NCBI chr 2:153,649,411...153,687,730
Ensembl chr 2:153,649,450...153,687,730
JBrowse link
G Hdac1 histone deacetylase 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 4:129,516,104...129,542,646
Ensembl chr 4:129,516,104...129,542,713
JBrowse link
G Hells helicase, lymphoid specific IMP
IBA
(MGI:MGI:3573964|PMID:15647320)
(MGI:MGI:6201960|PMID:21873635)
UniProtKB
GO_Central
PMID:15647320, PMID:21873635 MGI:MGI:3573964, MGI:MGI:6201960 NCBI chr19:38,930,262...38,970,470
Ensembl chr19:38,930,915...38,971,051
JBrowse link
G Mbd2 methyl-CpG binding domain protein 2 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr18:70,568,225...70,629,134
Ensembl chr18:70,568,189...70,626,131
JBrowse link
G Mbd3 methyl-CpG binding domain protein 3 IDA (MGI:MGI:3611125|PMID:16322236) MGI PMID:16322236 MGI:MGI:3611125 NCBI chr10:80,392,539...80,399,531
Ensembl chr10:80,392,539...80,399,550
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 IDA (MGI:MGI:3611125|PMID:16322236) MGI PMID:16322236 MGI:MGI:3611125 NCBI chr 9:21,616,106...21,704,230
Ensembl chr 9:21,616,169...21,704,230
JBrowse link
DNA replication-dependent nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asf1a anti-silencing function 1A histone chaperone ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr10:53,596,961...53,609,225
Ensembl chr10:53,596,757...53,609,225
JBrowse link
G Asf1b anti-silencing function 1B histone chaperone ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr 8:83,955,694...83,970,195
Ensembl chr 8:83,955,507...83,970,197
JBrowse link
G Chaf1a chromatin assembly factor 1, subunit A (p150) ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr17:56,040,416...56,068,026
Ensembl chr17:56,040,439...56,072,289
JBrowse link
G Chaf1b chromatin assembly factor 1, subunit B (p60) ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr16:93,883,900...93,906,115
Ensembl chr16:93,883,901...93,906,115
JBrowse link
G H3c1 H3 clustered histone 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:23,761,885...23,762,386
Ensembl chr13:23,761,853...23,762,386
JBrowse link
G H3c10 H3 clustered histone 10 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:21,717,628...21,718,115
Ensembl chr13:21,717,659...21,718,069
JBrowse link
G H3c11 H3 clustered histone 11 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:21,782,915...21,783,397
Ensembl chr13:21,782,960...21,783,370
JBrowse link
G H3c13 H3 clustered histone 13 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 3:96,268,654...96,269,155
Ensembl chr 3:96,268,654...96,269,141
JBrowse link
G H3c14 H3 clustered histone 14 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 3:96,246,685...96,247,348
Ensembl chr 3:96,246,685...96,248,509
JBrowse link
G H3c15 H3 clustered histone 15 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 3:96,238,479...96,239,127
Ensembl chr 3:96,238,108...96,239,127
JBrowse link
G H3c2 H3 clustered histone 2 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:23,752,345...23,752,840
Ensembl chr13:23,752,267...23,752,886
JBrowse link
G H3c4 H3 clustered histone 4 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:23,575,763...23,576,266
Ensembl chr13:23,575,763...23,577,011
JBrowse link
G H3c6 H3 clustered histone 6 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:23,561,475...23,562,385
Ensembl chr13:23,561,534...23,562,369
JBrowse link
G H3c8 H3 clustered histone 8 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:23,535,418...23,535,909
Ensembl chr13:23,535,422...23,535,951
JBrowse link
G H4c1 H4 clustered histone 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:23,760,795...23,761,249
Ensembl chr13:23,760,692...23,761,230
JBrowse link
G H4c11 H4 clustered histone 11 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:21,735,034...21,735,456
Ensembl chr13:21,735,064...21,735,837
JBrowse link
G H4c12 H4 clustered histone 12 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:21,750,145...21,750,553
Ensembl chr13:21,750,194...21,750,505
JBrowse link
G H4c14 H4 clustered histone 14 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 3:96,262,934...96,263,317
Ensembl chr 3:96,261,682...96,263,311
JBrowse link
G H4c17 H4 clustered histone 17 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:21,811,746...21,812,150
Ensembl chr13:21,811,746...21,812,147
JBrowse link
G H4c18 H4 clustered histone 18 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:21,831,792...21,832,197
Ensembl chr13:21,831,767...21,832,196
JBrowse link
G H4c2 H4 clustered histone 2 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:23,756,937...23,757,386
Ensembl chr13:23,757,013...23,757,409
JBrowse link
G H4c3 H4 clustered histone 3 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:23,698,084...23,698,458
Ensembl chr13:23,697,635...23,698,454
JBrowse link
G H4c4 H4 clustered histone 4 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:23,581,568...23,581,969
Ensembl chr13:23,581,598...23,582,735
JBrowse link
G H4c6 H4 clustered histone 6 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:23,551,286...23,551,668
Ensembl chr13:23,551,258...23,551,648
JBrowse link
G H4c8 H4 clustered histone 8 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:23,531,044...23,531,478
Ensembl chr13:23,531,050...23,531,519
JBrowse link
G H4c9 H4 clustered histone 9 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:22,040,960...22,041,362
Ensembl chr13:22,040,636...22,041,362
JBrowse link
G H4f16 H4 histone 16 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 6:136,803,993...136,804,431
Ensembl chr 6:136,801,553...136,804,415
JBrowse link
G Hat1 histone aminotransferase 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 2:71,389,260...71,441,622
Ensembl chr 2:71,388,958...71,441,622
JBrowse link
G Ipo4 importin 4 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr14:55,625,400...55,635,868
Ensembl chr14:55,625,400...55,635,957
JBrowse link
G Nasp nuclear autoantigenic sperm protein (histone-binding) ISO
IBA
IDA
(MGI:MGI:6201960|PMID:21873635)
(MGI:MGI:3694318|PMID:16728391)
MGI
GO_Central
UniProt
PMID:16728391, PMID:21873635 GO_REF:0000096, MGI:MGI:3694318, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr 4:116,601,052...116,628,676
Ensembl chr 4:116,601,052...116,627,941
JBrowse link
G Rbbp4 retinoblastoma binding protein 4, chromatin remodeling factor ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 4:129,307,100...129,335,370
Ensembl chr 4:129,307,100...129,335,370
JBrowse link
DNA replication-independent nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asf1a anti-silencing function 1A histone chaperone ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr10:53,596,961...53,609,225
Ensembl chr10:53,596,757...53,609,225
JBrowse link
G Asf1b anti-silencing function 1B histone chaperone ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr 8:83,955,694...83,970,195
Ensembl chr 8:83,955,507...83,970,197
JBrowse link
G Atrx ATRX, chromatin remodeler ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr  X:105,797,615...105,929,372
Ensembl chr  X:105,797,615...105,929,403
JBrowse link
G Cabin1 calcineurin binding protein 1 ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr10:75,646,110...75,764,357
Ensembl chr10:75,646,112...75,764,341
JBrowse link
G H3f3a H3.3 histone A ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 1:180,802,560...180,813,605
Ensembl chr 1:180,800,832...180,813,943
JBrowse link
G H3f3b H3.3 histone B ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr11:116,021,961...116,026,039
Ensembl chr11:116,021,912...116,027,962
JBrowse link
G H4c1 H4 clustered histone 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:23,760,795...23,761,249
Ensembl chr13:23,760,692...23,761,230
JBrowse link
G H4c11 H4 clustered histone 11 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:21,735,034...21,735,456
Ensembl chr13:21,735,064...21,735,837
JBrowse link
G H4c12 H4 clustered histone 12 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:21,750,145...21,750,553
Ensembl chr13:21,750,194...21,750,505
JBrowse link
G H4c14 H4 clustered histone 14 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 3:96,262,934...96,263,317
Ensembl chr 3:96,261,682...96,263,311
JBrowse link
G H4c17 H4 clustered histone 17 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:21,811,746...21,812,150
Ensembl chr13:21,811,746...21,812,147
JBrowse link
G H4c18 H4 clustered histone 18 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:21,831,792...21,832,197
Ensembl chr13:21,831,767...21,832,196
JBrowse link
G H4c2 H4 clustered histone 2 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:23,756,937...23,757,386
Ensembl chr13:23,757,013...23,757,409
JBrowse link
G H4c3 H4 clustered histone 3 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:23,698,084...23,698,458
Ensembl chr13:23,697,635...23,698,454
JBrowse link
G H4c4 H4 clustered histone 4 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:23,581,568...23,581,969
Ensembl chr13:23,581,598...23,582,735
JBrowse link
G H4c6 H4 clustered histone 6 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:23,551,286...23,551,668
Ensembl chr13:23,551,258...23,551,648
JBrowse link
G H4c8 H4 clustered histone 8 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:23,531,044...23,531,478
Ensembl chr13:23,531,050...23,531,519
JBrowse link
G H4c9 H4 clustered histone 9 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:22,040,960...22,041,362
Ensembl chr13:22,040,636...22,041,362
JBrowse link
G H4f16 H4 histone 16 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 6:136,803,993...136,804,431
Ensembl chr 6:136,801,553...136,804,415
JBrowse link
G Hat1 histone aminotransferase 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 2:71,389,260...71,441,622
Ensembl chr 2:71,388,958...71,441,622
JBrowse link
G Hira histone cell cycle regulator ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr16:18,876,750...18,970,309
Ensembl chr16:18,877,037...18,970,309
JBrowse link
G Ipo4 importin 4 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr14:55,625,400...55,635,868
Ensembl chr14:55,625,400...55,635,957
JBrowse link
G Nasp nuclear autoantigenic sperm protein (histone-binding) ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 4:116,601,052...116,628,676
Ensembl chr 4:116,601,052...116,627,941
JBrowse link
G Rbbp4 retinoblastoma binding protein 4, chromatin remodeling factor ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 4:129,307,100...129,335,370
Ensembl chr 4:129,307,100...129,335,370
JBrowse link
G Ubn1 ubinuclein 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr16:5,050,057...5,086,289
Ensembl chr16:5,050,057...5,086,289
JBrowse link
heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bahd1 bromo adjacent homology domain containing 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 2:118,900,336...118,924,528
Ensembl chr 2:118,900,377...118,924,528
JBrowse link
G Baz2a bromodomain adjacent to zinc finger domain, 2A IDA
IMP
(MGI:MGI:3653583|PMID:16678107)
(MGI:MGI:4462332|PMID:20168299)
MGI PMID:16678107, PMID:20168299 MGI:MGI:3653583, MGI:MGI:4462332 NCBI chr10:128,091,370...128,129,303
Ensembl chr10:128,091,577...128,129,303
JBrowse link
G Ezh1 enhancer of zeste 1 polycomb repressive complex 2 subunit IDA (MGI:MGI:3820717|PMID:19026781) ARUK-UCL PMID:19026781 MGI:MGI:3820717 NCBI chr11:101,191,115...101,226,463
Ensembl chr11:101,191,115...101,226,463
JBrowse link
G Hmga2 high mobility group AT-hook 2 ISO (PMID:16901784) UniProtKB PMID:16901784 NCBI chr10:120,361,268...120,476,469
Ensembl chr10:120,361,275...120,476,469
JBrowse link
G Pole3 polymerase (DNA directed), epsilon 3 (p17 subunit) IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 4:62,523,798...62,525,014
Ensembl chr 4:62,522,649...62,525,068
JBrowse link
G Sirt1 sirtuin 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr10:63,319,005...63,339,035
Ensembl chr10:63,319,005...63,381,704
JBrowse link
heterochromatin assembly by small RNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fam172a family with sequence similarity 172, member A IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr13:77,708,677...78,166,240
Ensembl chr13:77,702,033...78,166,235
JBrowse link
G Nrde2 nrde-2 necessary for RNA interference, domain containing IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr12:100,125,450...100,160,414
Ensembl chr12:100,125,452...100,159,653
JBrowse link
G Znfx1 zinc finger, NFX1-type containing 1 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 2:167,035,790...167,063,015
Ensembl chr 2:167,035,793...167,063,015
JBrowse link
histone H3-S10 phosphorylation involved in chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnb1 cyclin B1 IDA (MGI:MGI:5494393|PMID:22053081) MGI PMID:22053081 MGI:MGI:5494393 NCBI chr13:100,778,739...100,786,486
Ensembl chr13:100,778,650...100,786,570
JBrowse link
G Mir744 microRNA 744 IDA (MGI:MGI:5494393|PMID:22053081) MGI PMID:22053081 MGI:MGI:5494393 NCBI chr11:65,734,733...65,734,832
Ensembl chr11:65,734,733...65,734,832
JBrowse link
inactivation of X chromosome by heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smchd1 SMC hinge domain containing 1 IMP (MGI:MGI:5532809|PMID:23754746) UniProtKB PMID:23754746 MGI:MGI:5532809 NCBI chr17:71,344,489...71,475,366
Ensembl chr17:71,344,489...71,475,343
JBrowse link
meiotic chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Incenp inner centromere protein IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr19:9,872,295...9,899,489
Ensembl chr19:9,872,296...9,899,551
JBrowse link
G Mastl microtubule associated serine/threonine kinase-like ISO (PMID:23843240) AgBase PMID:23843240 NCBI chr 2:23,116,539...23,156,024
Ensembl chr 2:23,115,606...23,156,024
JBrowse link
G Ncapd2 non-SMC condensin I complex, subunit D2 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 6:125,168,007...125,192,100
Ensembl chr 6:125,168,007...125,191,701
JBrowse link
G Ncapd3 non-SMC condensin II complex, subunit D3 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 9:27,030,165...27,096,522
Ensembl chr 9:27,030,175...27,095,315
JBrowse link
G Ncaph non-SMC condensin I complex, subunit H IMP
IGI
(MGI:MGI:5317363|PMID:21795393)
(MGI:MGI:5784807|PMID:25961503)
MGI PMID:21795393, PMID:25961503 MGI:MGI:5317363, MGI:MGI:5784807 NCBI chr 2:127,103,809...127,133,954
Ensembl chr 2:127,103,809...127,133,954
JBrowse link
G Ncaph2 non-SMC condensin II complex, subunit H2 IMP
IBA
(MGI:MGI:5784807|PMID:25961503)
(MGI:MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:21873635, PMID:25961503 MGI:MGI:5784807, MGI:MGI:6201960 NCBI chr15:89,355,719...89,372,850
Ensembl chr15:89,355,719...89,372,826
JBrowse link
G Smc2 structural maintenance of chromosomes 2 IMP (MGI:MGI:5317363|PMID:21795393) MGI PMID:21795393 MGI:MGI:5317363 NCBI chr 4:52,439,221...52,488,365
Ensembl chr 4:52,439,243...52,488,260
JBrowse link
G Smc4 structural maintenance of chromosomes 4 IMP (MGI:MGI:5317363|PMID:21795393) MGI PMID:21795393 MGI:MGI:5317363 NCBI chr 3:69,004,738...69,034,623
Ensembl chr 3:69,004,738...69,034,623
JBrowse link
mitotic chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akap8 A kinase (PRKA) anchor protein 8 IDA
ISO
(MGI:MGI:3512088|PMID:12082153) MGI PMID:12082153 GO_REF:0000008, MGI:MGI:2154458, MGI:MGI:3512088 NCBI chr17:32,303,672...32,321,238
Ensembl chr17:32,303,672...32,321,238
JBrowse link
G Akap8l A kinase (PRKA) anchor protein 8-like ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr17:32,321,424...32,350,616
Ensembl chr17:32,321,424...32,350,607
JBrowse link
G Cdca5 cell division cycle associated 5 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr19:6,085,097...6,091,773
Ensembl chr19:6,084,983...6,091,777
JBrowse link
G Chmp1a charged multivesicular body protein 1A ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 8:123,204,261...123,212,788
Ensembl chr 8:123,204,264...123,212,763
JBrowse link
G Ncapd2 non-SMC condensin I complex, subunit D2 ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr 6:125,168,007...125,192,100
Ensembl chr 6:125,168,007...125,191,701
JBrowse link
G Ncapd3 non-SMC condensin II complex, subunit D3 ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr 9:27,030,165...27,096,522
Ensembl chr 9:27,030,175...27,095,315
JBrowse link
G Ncapg non-SMC condensin I complex, subunit G ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr 5:45,669,891...45,700,547
Ensembl chr 5:45,669,919...45,700,546
JBrowse link
G Ncaph non-SMC condensin I complex, subunit H ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr 2:127,103,809...127,133,954
Ensembl chr 2:127,103,809...127,133,954
JBrowse link
G Ncaph2 non-SMC condensin II complex, subunit H2 IMP (MGI:MGI:5905517|PMID:27737959) UniProt PMID:27737959 MGI:MGI:5905517 NCBI chr15:89,355,719...89,372,850
Ensembl chr15:89,355,719...89,372,826
JBrowse link
G Nipbl NIPBL cohesin loading factor IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr15:8,289,824...8,465,315
Ensembl chr15:8,290,617...8,444,463
JBrowse link
G Nusap1 nucleolar and spindle associated protein 1 ISO
IBA
(MGI:MGI:2675533|PMID:12963707)
(MGI:MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:12963707, PMID:21873635 MGI:MGI:2675533, MGI:MGI:6201960 NCBI chr 2:119,618,298...119,650,165
Ensembl chr 2:119,618,298...119,651,244
JBrowse link
G Phf13 PHD finger protein 13 ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr 4:151,989,631...151,996,179
Ensembl chr 4:151,989,633...151,996,258
JBrowse link
G Smc2 structural maintenance of chromosomes 2 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 4:52,439,221...52,488,365
Ensembl chr 4:52,439,243...52,488,260
JBrowse link
G Smc4 structural maintenance of chromosomes 4 ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr 3:69,004,738...69,034,623
Ensembl chr 3:69,004,738...69,034,623
JBrowse link
G Ttn titin ISO (PMID:9548712) BHF-UCL PMID:9548712 NCBI chr 2:76,703,980...76,982,557
Ensembl chr 2:76,703,980...76,982,547
JBrowse link
negative regulation of chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H3f3a H3.3 histone A IGI (MGI:MGI:5502235|PMID:23903189) MGI PMID:23903189 MGI:MGI:5502235 NCBI chr 1:180,802,560...180,813,605
Ensembl chr 1:180,800,832...180,813,943
JBrowse link
G H3f3b H3.3 histone B IGI (MGI:MGI:5502235|PMID:23903189) MGI PMID:23903189 MGI:MGI:5502235 NCBI chr11:116,021,961...116,026,039
Ensembl chr11:116,021,912...116,027,962
JBrowse link
negative regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation-induced cytidine deaminase ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 6:122,553,809...122,564,180
Ensembl chr 6:122,553,801...122,564,180
JBrowse link
G Apobec1 apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1 IMP (MGI:MGI:5285126|PMID:21496894) UniProtKB PMID:21496894 MGI:MGI:5285126 NCBI chr 6:122,577,792...122,603,024
Ensembl chr 6:122,577,792...122,602,444
JBrowse link
G Tet1 tet methylcytosine dioxygenase 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr10:62,804,570...62,887,469
Ensembl chr10:62,804,570...62,908,996
JBrowse link
negative regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phf2 PHD finger protein 2 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:48,801,750...48,870,885
Ensembl chr13:48,801,750...48,871,119
JBrowse link
G Phf8 PHD finger protein 8 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr  X:151,520,641...151,633,859
Ensembl chr  X:151,520,672...151,633,859
JBrowse link
nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anp32b acidic (leucine-rich) nuclear phosphoprotein 32 family, member B ISO (PMID:20538007) UniProtKB PMID:20538007 NCBI chr 4:46,450,926...46,472,657
Ensembl chr 4:46,450,902...46,472,657
JBrowse link
G Asf1a anti-silencing function 1A histone chaperone ISO MGI GO_REF:0000008, MGI:MGI:2154458 NCBI chr10:53,596,961...53,609,225
Ensembl chr10:53,596,757...53,609,225
JBrowse link
G Asf1b anti-silencing function 1B histone chaperone IDA (MGI:MGI:2675150|PMID:12842904) MGI PMID:12842904 MGI:MGI:2675150 NCBI chr 8:83,955,694...83,970,195
Ensembl chr 8:83,955,507...83,970,197
JBrowse link
G Atrx ATRX, chromatin remodeler ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr  X:105,797,615...105,929,372
Ensembl chr  X:105,797,615...105,929,403
JBrowse link
G Brd2 bromodomain containing 2 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr17:34,112,019...34,122,814
Ensembl chr17:34,112,023...34,122,634
JBrowse link
G Chaf1a chromatin assembly factor 1, subunit A (p150) IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr17:56,040,416...56,068,026
Ensembl chr17:56,040,439...56,072,289
JBrowse link
G Chaf1b chromatin assembly factor 1, subunit B (p60) IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr16:93,883,900...93,906,115
Ensembl chr16:93,883,901...93,906,115
JBrowse link
G Daxx Fas death domain-associated protein IMP
IBA
ISO
(MGI:MGI:5567907|PMID:20651253)
(MGI:MGI:6201960|PMID:21873635)
UniProtKB
GO_Central
MGI
PMID:20651253, PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:5567907, MGI:MGI:6201960 NCBI chr17:33,909,404...33,915,590
Ensembl chr17:33,909,414...33,915,590
JBrowse link
G Grwd1 glutamate-rich WD repeat containing 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 7:45,825,223...45,830,994
Ensembl chr 7:45,825,223...45,830,944
JBrowse link
G H1f0 H1.0 linker histone IEA UniProt GO_REF:0000002, MGI:MGI:2152098 NCBI chr15:79,028,212...79,030,504
Ensembl chr15:79,028,450...79,030,504
JBrowse link
G H1f1 H1.1 linker histone, cluster member IEA UniProt GO_REF:0000002, MGI:MGI:2152098 NCBI chr13:23,763,668...23,764,412
Ensembl chr13:23,763,666...23,764,406
JBrowse link
G H1f2 H1.2 linker histone, cluster member IEA UniProt GO_REF:0000002, MGI:MGI:2152098 NCBI chr13:23,738,807...23,739,531
Ensembl chr13:23,738,808...23,740,367
JBrowse link
G H1f3 H1.3 linker histone, cluster member IEA UniProt GO_REF:0000002, MGI:MGI:2152098 NCBI chr13:23,555,032...23,555,807
Ensembl chr13:23,553,262...23,560,686
JBrowse link
G H1f4 H1.4 linker histone, cluster member IEA UniProt GO_REF:0000002, MGI:MGI:2152098 NCBI chr13:23,621,777...23,622,558
Ensembl chr13:23,620,629...23,622,558
JBrowse link
G H1f5 H1.5 linker histone, cluster member IEA UniProt GO_REF:0000002, MGI:MGI:2152098 NCBI chr13:21,779,832...21,780,625
Ensembl chr13:21,779,883...21,780,625
JBrowse link
G H1f6 H1.6 linker histone, cluster member IEA UniProt GO_REF:0000002, MGI:MGI:2152098 NCBI chr13:23,695,811...23,696,545
Ensembl chr13:23,695,814...23,696,725
JBrowse link
G H1f8 H1.8 linker histone ISA (MGI:MGI:2159419|PMID:11171391) MGI PMID:11171391 MGI:MGI:2159419 NCBI chr 6:115,944,931...115,950,242
Ensembl chr 6:115,944,938...115,950,236
JBrowse link
G H1f9 H1.9 linker histone IEA UniProtKB GO_REF:0000002, MGI:MGI:2152098 NCBI chr11:94,967,593...94,968,456
Ensembl chr11:94,967,593...94,968,456
JBrowse link
G H2ab1 H2A.B variant histone 1 ISO (PMID:22795134) UniProtKB PMID:22795134 NCBI chr  X:117,014,757...117,015,104
Ensembl chr  X:117,014,757...117,015,104
JBrowse link
G H2ab3 H2A.B variant histone 3 ISO (PMID:22795134) UniProtKB PMID:22795134 NCBI chr  X:120,312,582...120,313,226
Ensembl chr  X:120,312,748...120,313,095
JBrowse link
G H2al2a H2A histone family member L2A IDA (MGI:MGI:3702345|PMID:17261847) MGI PMID:17261847 MGI:MGI:3702345 NCBI chr 2:17,996,417...17,996,958
Ensembl chr 2:17,996,417...17,996,958
JBrowse link
G H2bc1 H2B clustered histone 1 IMP
IBA
IDA
ISO
(MGI:MGI:5502464|PMID:23884607)
(MGI:MGI:6201960|PMID:21873635)
(MGI:MGI:3702345|PMID:17261847)
UniProtKB
GO_Central
MGI
PMID:17261847, PMID:21873635, PMID:23884607 GO_REF:0000096, MGI:MGI:3702345, MGI:MGI:4834177, MGI:MGI:5502464, MGI:MGI:6201960 NCBI chr13:23,933,725...23,934,156
Ensembl chr13:23,933,773...23,934,156
JBrowse link
G H2bc12 H2B clustered histone 12 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr13:22,035,821...22,036,320
Ensembl chr13:22,035,870...22,036,345
JBrowse link
G H2bc14 H2B clustered histone 14 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr13:21,722,044...21,722,526
Ensembl chr13:21,722,044...21,722,567
JBrowse link
G H2bc18 H2B clustered histone 18 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 3:96,269,700...96,270,192
Ensembl chr 3:96,269,752...96,270,132
JBrowse link
G H2bc21 H2B clustered histone 21 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 3:96,221,072...96,223,738
Ensembl chr 3:96,221,119...96,223,738
JBrowse link
G H2bc22 H2B clustered histone 22 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr13:21,787,483...21,801,561
Ensembl chr13:21,787,461...21,789,213
JBrowse link
G H2bc3 H2B clustered histone 3 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr13:23,746,734...23,747,223
Ensembl chr13:23,746,734...23,747,241
JBrowse link
G H2bc4 H2B clustered histone 4 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr13:23,684,199...23,692,480
Ensembl chr13:23,684,199...23,692,908
JBrowse link
G H2bc7 H2B clustered histone 7 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr13:23,573,760...23,574,207
Ensembl chr13:23,573,736...23,574,196
JBrowse link
G H2bc9 H2B clustered histone 9 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr13:23,542,923...23,543,444
Ensembl chr13:23,541,714...23,543,392
JBrowse link
G H2bl1 H2B.L histone variant 1 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr13:98,984,090...98,984,565
Ensembl chr13:98,984,085...98,984,565
JBrowse link
G H2bu2 H2B.U histone 2 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr11:58,948,911...58,949,372
Ensembl chr11:58,948,920...58,949,533
JBrowse link
G H2bw2 H2B.W histone 2 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr  X:136,927,325...136,928,373
Ensembl chr  X:136,927,325...136,928,376
JBrowse link
G H3c1 H3 clustered histone 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:23,761,885...23,762,386
Ensembl chr13:23,761,853...23,762,386
JBrowse link
G H3c10 H3 clustered histone 10 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:21,717,628...21,718,115
Ensembl chr13:21,717,659...21,718,069
JBrowse link
G H3c11 H3 clustered histone 11 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:21,782,915...21,783,397
Ensembl chr13:21,782,960...21,783,370
JBrowse link
G H3c13 H3 clustered histone 13 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 3:96,268,654...96,269,155
Ensembl chr 3:96,268,654...96,269,141
JBrowse link
G H3c14 H3 clustered histone 14 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 3:96,246,685...96,247,348
Ensembl chr 3:96,246,685...96,248,509
JBrowse link
G H3c15 H3 clustered histone 15 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 3:96,238,479...96,239,127
Ensembl chr 3:96,238,108...96,239,127
JBrowse link
G H3c2 H3 clustered histone 2 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:23,752,345...23,752,840
Ensembl chr13:23,752,267...23,752,886
JBrowse link
G H3c3 H3 clustered histone 3 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:23,745,042...23,745,521
Ensembl chr13:23,744,973...23,745,602
JBrowse link
G H3c4 H3 clustered histone 4 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:23,575,763...23,576,266
Ensembl chr13:23,575,763...23,577,011
JBrowse link
G H3c6 H3 clustered histone 6 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:23,561,475...23,562,385
Ensembl chr13:23,561,534...23,562,369
JBrowse link
G H3c7 H3 clustered histone 7 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:23,544,052...23,544,954
Ensembl chr13:23,544,052...23,545,312
JBrowse link
G H3c8 H3 clustered histone 8 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:23,535,418...23,535,909
Ensembl chr13:23,535,422...23,535,951
JBrowse link
G H3f3a H3.3 histone A ISO (PMID:21636898)
(PMID:25615412)
UniProtKB PMID:21636898, PMID:25615412 NCBI chr 1:180,802,560...180,813,605
Ensembl chr 1:180,800,832...180,813,943
JBrowse link
G H3f3b H3.3 histone B ISO (PMID:21636898)
(PMID:25615412)
UniProtKB PMID:21636898, PMID:25615412 NCBI chr11:116,021,961...116,026,039
Ensembl chr11:116,021,912...116,027,962
JBrowse link
G H3f3c H3 histone, family 3C ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 2:119,665,116...119,666,152
Ensembl chr 2:119,665,626...119,666,036
JBrowse link
G H3f4 H3.4 histone ISO (PMID:25615412)
(PMID:20498094)
UniProtKB PMID:20498094, PMID:25615412 NCBI chr11:58,961,711...58,962,273
Ensembl chr11:58,961,812...58,962,222
JBrowse link
G H4c1 H4 clustered histone 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:23,760,795...23,761,249
Ensembl chr13:23,760,692...23,761,230
JBrowse link
G H4c11 H4 clustered histone 11 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:21,735,034...21,735,456
Ensembl chr13:21,735,064...21,735,837
JBrowse link
G H4c12 H4 clustered histone 12 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:21,750,145...21,750,553
Ensembl chr13:21,750,194...21,750,505
JBrowse link
G H4c14 H4 clustered histone 14 ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr 3:96,262,934...96,263,317
Ensembl chr 3:96,261,682...96,263,311
JBrowse link
G H4c17 H4 clustered histone 17 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:21,811,746...21,812,150
Ensembl chr13:21,811,746...21,812,147
JBrowse link
G H4c18 H4 clustered histone 18 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:21,831,792...21,832,197
Ensembl chr13:21,831,767...21,832,196
JBrowse link
G H4c2 H4 clustered histone 2 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:23,756,937...23,757,386
Ensembl chr13:23,757,013...23,757,409
JBrowse link
G H4c3 H4 clustered histone 3 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:23,698,084...23,698,458
Ensembl chr13:23,697,635...23,698,454
JBrowse link
G H4c4 H4 clustered histone 4 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:23,581,568...23,581,969
Ensembl chr13:23,581,598...23,582,735
JBrowse link
G H4c6 H4 clustered histone 6 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:23,551,286...23,551,668
Ensembl chr13:23,551,258...23,551,648
JBrowse link
G H4c8 H4 clustered histone 8 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:23,531,044...23,531,478
Ensembl chr13:23,531,050...23,531,519
JBrowse link
G H4c9 H4 clustered histone 9 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr13:22,040,960...22,041,362
Ensembl chr13:22,040,636...22,041,362
JBrowse link
G H4f16 H4 histone 16 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 6:136,803,993...136,804,431
Ensembl chr 6:136,801,553...136,804,415
JBrowse link
G Hmgb1 high mobility group box 1 ISO (PMID:2465778) AgBase PMID:2465778 NCBI chr 5:149,046,702...149,053,057
Ensembl chr 5:149,046,702...149,184,489
JBrowse link
G Hmgb2 high mobility group box 2 ISO (PMID:2465778) AgBase PMID:2465778 NCBI chr 8:57,511,843...57,515,999
Ensembl chr 8:57,511,907...57,515,999
JBrowse link
G Hp1bp3 heterochromatin protein 1, binding protein 3 IEA UniProt GO_REF:0000002, MGI:MGI:2152098 NCBI chr 4:138,216,470...138,244,683
Ensembl chr 4:138,216,296...138,244,683
JBrowse link
G Kat6a K(lysine) acetyltransferase 6A IEA UniProtKB GO_REF:0000002, MGI:MGI:2152098 NCBI chr 8:22,859,442...22,943,259
Ensembl chr 8:22,859,535...22,943,259
JBrowse link
G Kat6b K(lysine) acetyltransferase 6B IEA UniProtKB GO_REF:0000002, MGI:MGI:2152098 NCBI chr14:21,499,216...21,672,478
Ensembl chr14:21,481,434...21,672,478
JBrowse link
G Macroh2a1 macroH2A.1 histone IEA UniProtKB GO_REF:0000002, MGI:MGI:2152098 NCBI chr13:56,073,622...56,135,626
Ensembl chr13:56,073,619...56,136,361
JBrowse link
G Macroh2a2 macroH2A.2 histone IEA UniProtKB GO_REF:0000002, MGI:MGI:2152098 NCBI chr10:61,738,640...61,784,604
Ensembl chr10:61,738,665...61,784,147
JBrowse link
G Mcm2 minichromosome maintenance complex component 2 IDA (MGI:MGI:2156014|PMID:10531422) MGI PMID:10531422 MGI:MGI:2156014 NCBI chr 6:88,883,474...88,898,780
Ensembl chr 6:88,883,474...88,898,780
JBrowse link
G Naa60 N(alpha)-acetyltransferase 60, NatF catalytic subunit ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr16:3,872,496...3,904,781
Ensembl chr16:3,872,375...3,904,770
JBrowse link
G Nap1l1 nucleosome assembly protein 1-like 1 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr10:111,472,882...111,498,150
Ensembl chr10:111,473,223...111,498,150
JBrowse link
G Nap1l2 nucleosome assembly protein 1-like 2 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr  X:103,184,176...103,186,653
Ensembl chr  X:103,184,176...103,186,640
JBrowse link
G Nap1l3 nucleosome assembly protein 1-like 3 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr  X:122,394,560...122,397,385
Ensembl chr  X:122,394,565...122,397,401
JBrowse link
G Nap1l4 nucleosome assembly protein 1-like 4 IDA
IBA
ISO
(MGI:MGI:5897488|PMID:28366643)
(MGI:MGI:6201960|PMID:21873635)
UniProtKB
GO_Central
MGI
PMID:21873635, PMID:28366643 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:5897488, MGI:MGI:6201960 NCBI chr 7:143,513,579...143,549,882
Ensembl chr 7:143,513,579...143,549,106
JBrowse link
G Nap1l5 nucleosome assembly protein 1-like 5 IEA UniProtKB GO_REF:0000002, MGI:MGI:2152098 NCBI chr 6:58,905,233...58,907,126
Ensembl chr 6:58,905,233...58,907,076
JBrowse link
G Nasp nuclear autoantigenic sperm protein (histone-binding) ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 4:116,601,052...116,628,676
Ensembl chr 4:116,601,052...116,627,941
JBrowse link
G Npm1 nucleophosmin 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr11:33,152,498...33,164,142
Ensembl chr11:33,152,287...33,163,206
JBrowse link
G Padi4 peptidyl arginine deiminase, type IV IMP (MGI:MGI:5545819|PMID:24463520) UniProtKB PMID:24463520 MGI:MGI:5545819 NCBI chr 4:140,745,508...140,774,239
Ensembl chr 4:140,745,865...140,774,236
JBrowse link
G Rsf1 remodeling and spacing factor 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 7:97,579,870...97,692,782
Ensembl chr 7:97,579,889...97,692,778
JBrowse link
G Sart3 squamous cell carcinoma antigen recognized by T cells 3 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 5:113,742,444...113,772,400
Ensembl chr 5:113,742,446...113,772,510
JBrowse link
G Set SET nuclear oncogene IEA UniProtKB GO_REF:0000002, MGI:MGI:2152098 NCBI chr 2:30,061,996...30,072,577
Ensembl chr 2:30,057,378...30,072,577
JBrowse link
G Shprh SNF2 histone linker PHD RING helicase IEA UniProtKB GO_REF:0000002, MGI:MGI:2152098 NCBI chr10:11,149,272...11,217,595
Ensembl chr10:11,149,427...11,217,595
JBrowse link
G Smarca2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 TAS (MGI:MGI:1929360|PMID:11163203) MGI PMID:11163203 MGI:MGI:1929360 NCBI chr19:26,605,073...26,778,321
Ensembl chr19:26,605,050...26,778,322
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 TAS (MGI:MGI:1929360|PMID:11163203) MGI PMID:11163203 MGI:MGI:1929360 NCBI chr 9:21,616,106...21,704,230
Ensembl chr 9:21,616,169...21,704,230
JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 8:80,699,943...80,739,459
Ensembl chr 8:80,698,507...80,739,497
JBrowse link
G Smyd3 SET and MYND domain containing 3 IMP (MGI:MGI:5500979|PMID:23752591) MGI PMID:23752591 MGI:MGI:5500979 NCBI chr 1:178,951,960...179,518,053
Ensembl chr 1:178,951,960...179,518,041
JBrowse link
G Sox9 SRY (sex determining region Y)-box 9 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr11:112,782,210...112,787,757
Ensembl chr11:112,782,224...112,787,760
JBrowse link
G Spty2d1 SPT2 chromatin protein domain containing 1 ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr 7:46,990,396...47,008,414
Ensembl chr 7:46,990,396...47,008,411
JBrowse link
G Tspyl1 testis-specific protein, Y-encoded-like 1 IEA UniProtKB GO_REF:0000002, MGI:MGI:2152098 NCBI chr10:34,282,190...34,284,885
Ensembl chr10:34,282,190...34,285,275
JBrowse link
G Tspyl2 TSPY-like 2 IEA UniProtKB GO_REF:0000002, MGI:MGI:2152098 NCBI chr  X:152,336,851...152,342,484
Ensembl chr  X:152,336,852...152,342,425
JBrowse link
G Tspyl4 TSPY-like 4 IEA UniProtKB GO_REF:0000002, MGI:MGI:2152098 NCBI chr10:34,297,421...34,301,320
Ensembl chr10:34,297,442...34,301,320
JBrowse link
G Tspyl5 testis-specific protein, Y-encoded-like 5 IEA UniProtKB GO_REF:0000002, MGI:MGI:2152098 NCBI chr15:33,683,875...33,687,883
Ensembl chr15:33,683,875...33,687,884
JBrowse link
nucleosome positioning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctcf CCCTC-binding factor ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 8:105,636,474...105,682,922
Ensembl chr 8:105,636,568...105,682,922
JBrowse link
G H1f0 H1.0 linker histone IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr15:79,028,212...79,030,504
Ensembl chr15:79,028,450...79,030,504
JBrowse link
G H1f1 H1.1 linker histone, cluster member IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr13:23,763,668...23,764,412
Ensembl chr13:23,763,666...23,764,406
JBrowse link
G H1f10 H1.10 linker histone IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 6:87,980,421...87,981,482
Ensembl chr 6:87,980,421...87,981,637
JBrowse link
G H1f2 H1.2 linker histone, cluster member IMP
IBA
(MGI:MGI:2664444|PMID:12808097)
(MGI:MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:12808097, PMID:21873635 MGI:MGI:2664444, MGI:MGI:6201960 NCBI chr13:23,738,807...23,739,531
Ensembl chr13:23,738,808...23,740,367
JBrowse link
G H1f3 H1.3 linker histone, cluster member IMP
IBA
(MGI:MGI:2664444|PMID:12808097)
(MGI:MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:12808097, PMID:21873635 MGI:MGI:2664444, MGI:MGI:6201960 NCBI chr13:23,555,032...23,555,807
Ensembl chr13:23,553,262...23,560,686
JBrowse link
G H1f4 H1.4 linker histone, cluster member IMP
IBA
(MGI:MGI:2664444|PMID:12808097)
(MGI:MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:12808097, PMID:21873635 MGI:MGI:2664444, MGI:MGI:6201960 NCBI chr13:23,621,777...23,622,558
Ensembl chr13:23,620,629...23,622,558
JBrowse link
G H1f5 H1.5 linker histone, cluster member IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr13:21,779,832...21,780,625
Ensembl chr13:21,779,883...21,780,625
JBrowse link
G H1f6 H1.6 linker histone, cluster member IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr13:23,695,811...23,696,545
Ensembl chr13:23,695,814...23,696,725
JBrowse link
G H1f8 H1.8 linker histone IDA
IBA
(MGI:MGI:5559660|PMID:22868987)
(MGI:MGI:6201960|PMID:21873635)
UniProtKB
GO_Central
PMID:21873635, PMID:22868987 MGI:MGI:5559660, MGI:MGI:6201960 NCBI chr 6:115,944,931...115,950,242
Ensembl chr 6:115,944,938...115,950,236
JBrowse link
G H1f9 H1.9 linker histone IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr11:94,967,593...94,968,456
Ensembl chr11:94,967,593...94,968,456
JBrowse link
G Paf1 Paf1, RNA polymerase II complex component ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 7:28,392,996...28,399,383
Ensembl chr 7:28,392,951...28,399,388
JBrowse link
G Prdm9 PR domain containing 9 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr17:15,543,072...15,564,374
Ensembl chr17:15,543,079...15,564,354
JBrowse link
G Rsf1 remodeling and spacing factor 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 7:97,579,870...97,692,782
Ensembl chr 7:97,579,889...97,692,778
JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr 8:80,699,943...80,739,459
Ensembl chr 8:80,698,507...80,739,497
JBrowse link
pericentric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cenpv centromere protein V ISS
IBA
ISO
(MGI:MGI:3834784|PMID:18772885)
(MGI:MGI:6201960|PMID:21873635)
UniProtKB
GO_Central
MGI
PMID:18772885, PMID:21873635 GO_REF:0000096, MGI:MGI:3834784, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr11:62,524,944...62,539,869
Ensembl chr11:62,524,946...62,539,261
JBrowse link
G Dicer1 dicer 1, ribonuclease type III IMP (MGI:MGI:3528782|PMID:15713842) MGI PMID:15713842 MGI:MGI:3528782 NCBI chr12:104,687,740...104,751,968
Ensembl chr12:104,687,742...104,751,952
JBrowse link
G H3f3a H3.3 histone A IGI (MGI:MGI:5694896|PMID:26159997) MGI PMID:26159997 MGI:MGI:5694896 NCBI chr 1:180,802,560...180,813,605
Ensembl chr 1:180,800,832...180,813,943
JBrowse link
G H3f3b H3.3 histone B IGI (MGI:MGI:5694896|PMID:26159997) MGI PMID:26159997 MGI:MGI:5694896 NCBI chr11:116,021,961...116,026,039
Ensembl chr11:116,021,912...116,027,962
JBrowse link
G Hells helicase, lymphoid specific IMP
IBA
(MGI:MGI:3041983|PMID:14612388)
(MGI:MGI:6201960|PMID:21873635)
UniProtKB
GO_Central
PMID:14612388, PMID:21873635 MGI:MGI:3041983, MGI:MGI:6201960 NCBI chr19:38,930,262...38,970,470
Ensembl chr19:38,930,915...38,971,051
JBrowse link
positive regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf7ip activating transcription factor 7 interacting protein ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 6:136,518,789...136,610,850
Ensembl chr 6:136,506,167...136,610,862
JBrowse link
G Dnmt1 DNA methyltransferase (cytosine-5) 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 9:20,907,206...20,959,888
Ensembl chr 9:20,907,209...20,959,888
JBrowse link
G Morc2a microrchidia 2A ISO
IMP
(MGI:MGI:6271895|PMID:29728365) MGI
UniProt
PMID:29728365 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6271895 NCBI chr11:3,649,189...3,690,477
Ensembl chr11:3,649,191...3,690,477
JBrowse link
G Mphosph8 M-phase phosphoprotein 8 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr14:56,668,235...56,697,430
Ensembl chr14:56,668,248...56,697,430
JBrowse link
G Pphln1 periphilin 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr15:93,398,345...93,491,913
Ensembl chr15:93,398,350...93,491,510
JBrowse link
G Resf1 retroelement silencing factor 1 IMP (MGI:MGI:6271895|PMID:29728365) UniProt PMID:29728365 MGI:MGI:6271895 NCBI chr 6:149,309,409...149,335,663
Ensembl chr 6:149,309,414...149,335,663
JBrowse link
G Setdb1 SET domain, bifurcated 1 ISO
IBA
IMP
(MGI:MGI:6201960|PMID:21873635)
(MGI:MGI:5440670|PMID:20164836), (MGI:MGI:6271895|PMID:29728365)
MGI
GO_Central
UniProt
PMID:20164836, PMID:21873635, PMID:29728365 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:5440670, MGI:MGI:6201960, MGI:MGI:6271895 NCBI chr 3:95,323,525...95,357,202
Ensembl chr 3:95,323,525...95,357,202
JBrowse link
G Setdb2 SET domain, bifurcated 2 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr14:59,402,009...59,440,880
Ensembl chr14:59,402,009...59,440,884
JBrowse link
G Tasor transcription activation suppressor ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr14:27,423,674...27,483,555
Ensembl chr14:27,428,834...27,483,555
JBrowse link
G Trim28 tripartite motif-containing 28 ISO
IMP
(MGI:MGI:5440670|PMID:20164836) MGI
UniProt
PMID:20164836 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:5440670 NCBI chr 7:13,024,152...13,031,032
Ensembl chr 7:12,999,114...13,031,035
JBrowse link
positive regulation of heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tpr translocated promoter region, nuclear basket protein ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 1:150,392,802...150,449,935
Ensembl chr 1:150,392,838...150,449,935
JBrowse link
positive regulation of subtelomeric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sirt6 sirtuin 6 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr10:81,621,787...81,627,792
Ensembl chr10:81,621,785...81,627,797
JBrowse link
rDNA condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nipbl NIPBL cohesin loading factor IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr15:8,289,824...8,465,315
Ensembl chr15:8,290,617...8,444,463
JBrowse link
rDNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baz2a bromodomain adjacent to zinc finger domain, 2A IMP
IDA
(MGI:MGI:4462332|PMID:20168299)
(MGI:MGI:3587127|PMID:16085498), (MGI:MGI:3653583|PMID:16678107), (MGI:MGI:3852313|PMID:12198165), (MGI:MGI:3852588|PMID:19578370)
MGI PMID:12198165, PMID:16085498, PMID:16678107, PMID:19578370, PMID:20168299 MGI:MGI:3587127, MGI:MGI:3653583, MGI:MGI:3852313, MGI:MGI:3852588, MGI:MGI:4462332 NCBI chr10:128,091,370...128,129,303
Ensembl chr10:128,091,577...128,129,303
JBrowse link
G Bend3 BEN domain containing 3 ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr10:43,479,134...43,515,417
Ensembl chr10:43,478,831...43,515,396
JBrowse link
G Rrp8 ribosomal RNA processing 8 ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr 7:105,731,730...105,737,385
Ensembl chr 7:105,731,730...105,737,385
JBrowse link
G Sirt1 sirtuin 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr10:63,319,005...63,339,035
Ensembl chr10:63,319,005...63,381,704
JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 IDA (MGI:MGI:3587127|PMID:16085498) UniProtKB PMID:16085498 MGI:MGI:3587127 NCBI chr 8:80,699,943...80,739,459
Ensembl chr 8:80,698,507...80,739,497
JBrowse link
G Suv39h1 suppressor of variegation 3-9 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr  X:8,061,171...8,074,760
Ensembl chr  X:8,061,171...8,074,760
JBrowse link
G Ubtf upstream binding transcription factor, RNA polymerase I IMP (MGI:MGI:3836497|PMID:19103806) MGI PMID:19103806 MGI:MGI:3836497 NCBI chr11:102,304,560...102,323,649
Ensembl chr11:102,304,560...102,319,742
JBrowse link
regulation of chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Parp10 poly (ADP-ribose) polymerase family, member 10 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr15:76,232,995...76,243,440
Ensembl chr15:76,231,174...76,243,441
JBrowse link
G Spty2d1 SPT2 chromatin protein domain containing 1 ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr 7:46,990,396...47,008,414
Ensembl chr 7:46,990,396...47,008,411
JBrowse link
regulation of chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnb1 cyclin B1 ISO RGD GO_REF:0000096, MGI:MGI:4417868 NCBI chr13:100,778,739...100,786,486
Ensembl chr13:100,778,650...100,786,570
JBrowse link
G Mcph1 microcephaly, primary autosomal recessive 1 IMP (MGI:MGI:4437500|PMID:20169082) MGI PMID:20169082 MGI:MGI:4437500 NCBI chr 8:18,595,116...18,808,089
Ensembl chr 8:18,595,131...18,803,189
JBrowse link
G Wapl WAPL cohesin release factor IMP
IBA
(MGI:MGI:5544860|PMID:23975099)
(MGI:MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:21873635, PMID:23975099 MGI:MGI:5544860, MGI:MGI:6201960 NCBI chr14:34,672,379...34,747,983
Ensembl chr14:34,673,928...34,747,983
JBrowse link
regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pou5f1 POU domain, class 5, transcription factor 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr17:35,506,032...35,510,777
Ensembl chr17:35,506,018...35,510,772
JBrowse link
regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Macroh2a1 macroH2A.1 histone NOT ISO (PMID:24071584) UniProtKB PMID:24071584 NCBI chr13:56,073,622...56,135,626
Ensembl chr13:56,073,619...56,136,361
JBrowse link
G Naa40 N(alpha)-acetyltransferase 40, NatD catalytic subunit IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr19:7,225,668...7,241,222
Ensembl chr19:7,225,668...7,241,183
JBrowse link
senescence-associated heterochromatin focus assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdkn2a cyclin dependent kinase inhibitor 2A ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 4:89,274,473...89,294,619
Ensembl chr 4:89,274,471...89,294,653
JBrowse link
G Hmga1 high mobility group AT-hook 1 ISO (PMID:16901784) UniProtKB PMID:16901784 NCBI chr17:27,556,574...27,563,672
Ensembl chr11:120,762,794...120,764,419
Ensembl chr17:120,762,794...120,764,419
JBrowse link
G Hmga2 high mobility group AT-hook 2 ISO (PMID:16901784) UniProtKB PMID:16901784 NCBI chr10:120,361,268...120,476,469
Ensembl chr10:120,361,275...120,476,469
JBrowse link
sperm chromatin condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fshr follicle stimulating hormone receptor IMP (MGI:MGI:1855818|PMID:10775161) MGI PMID:10775161 MGI:MGI:1855818 NCBI chr17:88,984,952...89,200,675
Ensembl chr17:88,984,952...89,200,675
JBrowse link
G H1f7 H1.7 linker histone IMP (MGI:MGI:3531623|PMID:15710904) UniProtKB PMID:15710904 MGI:MGI:3531623 NCBI chr15:98,255,982...98,257,307
Ensembl chr15:98,255,986...98,257,293
JBrowse link
G Selenof selenoprotein F ISO RGD GO_REF:0000096, MGI:MGI:4417868 NCBI chr 3:144,570,427...144,597,677
Ensembl chr 3:144,570,304...144,597,680
JBrowse link
G Sycp1 synaptonemal complex protein 1 IGI (MGI:MGI:5315075|PMID:22164254) MGI PMID:22164254 MGI:MGI:5315075 NCBI chr 3:102,818,499...102,936,100
Ensembl chr 3:102,818,499...102,936,100
JBrowse link
G Sycp3 synaptonemal complex protein 3 IGI (MGI:MGI:5315075|PMID:22164254) MGI PMID:22164254 MGI:MGI:5315075 NCBI chr10:88,459,587...88,473,236
Ensembl chr10:88,459,569...88,473,236
JBrowse link
G Tssk6 testis-specific serine kinase 6 IMP (MGI:MGI:3580211|PMID:15870294) UniProtKB PMID:15870294 MGI:MGI:3580211 NCBI chr 8:69,902,184...69,903,518
Ensembl chr 8:69,902,184...69,903,518
JBrowse link
spermatogenesis, exchange of chromosomal proteins term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chd5 chromodomain helicase DNA binding protein 5 IMP (MGI:MGI:5559810|PMID:24252660) UniProtKB PMID:24252660 MGI:MGI:5559810 NCBI chr 4:152,338,646...152,390,194
Ensembl chr 4:152,338,651...152,390,194
JBrowse link
G Fshr follicle stimulating hormone receptor IMP (MGI:MGI:2682484|PMID:14680821) MGI PMID:14680821 MGI:MGI:2682484 NCBI chr17:88,984,952...89,200,675
Ensembl chr17:88,984,952...89,200,675
JBrowse link
G H2al2a H2A histone family member L2A IDA (MGI:MGI:5897488|PMID:28366643) UniProtKB PMID:28366643 MGI:MGI:5897488 NCBI chr 2:17,996,417...17,996,958
Ensembl chr 2:17,996,417...17,996,958
JBrowse link
G H2bc1 H2B clustered histone 1 IMP (MGI:MGI:5502464|PMID:23884607) UniProtKB PMID:23884607 MGI:MGI:5502464 NCBI chr13:23,933,725...23,934,156
Ensembl chr13:23,933,773...23,934,156
JBrowse link
G Piwil1 piwi-like RNA-mediated gene silencing 1 IMP (MGI:MGI:5905675|PMID:28552346) UniProtKB PMID:28552346 MGI:MGI:5905675 NCBI chr 5:128,736,071...128,755,474
Ensembl chr 5:128,702,524...128,755,474
JBrowse link
G Psme4 proteasome (prosome, macropain) activator subunit 4 IMP
IBA
(MGI:MGI:5494329|PMID:23706739)
(MGI:MGI:6201960|PMID:21873635)
UniProtKB
GO_Central
PMID:21873635, PMID:23706739 MGI:MGI:5494329, MGI:MGI:6201960 NCBI chr11:30,771,775...30,881,150
Ensembl chr11:30,771,726...30,880,361
JBrowse link
G Rnf8 ring finger protein 8 IMP (MGI:MGI:5905675|PMID:28552346) UniProtKB PMID:28552346 MGI:MGI:5905675 NCBI chr17:29,614,789...29,641,664
Ensembl chr17:29,614,790...29,644,991
JBrowse link
G Sycp3 synaptonemal complex protein 3 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr10:88,459,587...88,473,236
Ensembl chr10:88,459,569...88,473,236
JBrowse link
G Tnp1 transition protein 1 IMP (MGI:MGI:3041389|PMID:15083521), (MGI:MGI:3056208|PMID:15189834), (MGI:MGI:3620321|PMID:15163613), (MGI:MGI:5897488|PMID:28366643) UniProtKB PMID:15083521, PMID:15163613, PMID:15189834, PMID:28366643 MGI:MGI:3041389, MGI:MGI:3056208, MGI:MGI:3620321, MGI:MGI:5897488 NCBI chr 1:73,015,074...73,015,899
Ensembl chr 1:73,015,074...73,015,909
JBrowse link
G Tnp2 transition protein 2 IMP (MGI:MGI:3041389|PMID:15083521), (MGI:MGI:3056208|PMID:15189834), (MGI:MGI:3620321|PMID:15163613), (MGI:MGI:5897488|PMID:28366643) UniProtKB PMID:15083521, PMID:15163613, PMID:15189834, PMID:28366643 MGI:MGI:3041389, MGI:MGI:3056208, MGI:MGI:3620321, MGI:MGI:5897488 NCBI chr16:10,787,935...10,788,655
Ensembl chr16:10,787,936...10,788,660
JBrowse link
subtelomeric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H3f3a H3.3 histone A IGI (MGI:MGI:5694896|PMID:26159997) MGI PMID:26159997 MGI:MGI:5694896 NCBI chr 1:180,802,560...180,813,605
Ensembl chr 1:180,800,832...180,813,943
JBrowse link
G H3f3b H3.3 histone B IGI (MGI:MGI:5694896|PMID:26159997) MGI PMID:26159997 MGI:MGI:5694896 NCBI chr11:116,021,961...116,026,039
Ensembl chr11:116,021,912...116,027,962
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 23360
    cellular process 17360
      cellular component organization or biogenesis 6385
        cellular component organization 6197
          organelle organization 3829
            chromosome organization 1172
              DNA conformation change 251
                DNA packaging 206
                  chromatin assembly + 157
                  chromosome condensation + 48
                  nonrepetitive DNA condensation 0
                  nucleoid DNA packaging + 0
                  rDNA condensation 1
                  sperm chromatin condensation + 14
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.