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ONTOLOGY REPORT - ANNOTATIONS


Term:DNA packaging
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Accession:GO:0006323 term browser browse the term
Definition:Any process in which DNA and associated proteins are formed into a compact, orderly structure.
Synonyms:exact_synonym: DNA condensation;   DNA organisation;   DNA organization


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DNA packaging term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100152135 histone H2B type 1-A-like ISO (MGI:MGI:3702345|PMID:17261847) MGI PMID:17261847 MGI:MGI:3702345 NCBI chr 7:20,465,043...20,466,398
Ensembl chr 7:20,465,129...20,465,512
JBrowse link
G LOC100520991 histone H2A-Bbd type 1-like ISO (MGI:MGI:3702345|PMID:17261847) MGI PMID:17261847 MGI:MGI:3702345 NCBI chr  X:32,692,523...32,693,072 JBrowse link
G PRM2 protamine 2 IEA InterPro GO_REF:0000002 NCBI chr 3:31,864,350...31,864,959
Ensembl chr 3:31,864,323...31,865,023
JBrowse link
apoptotic chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACIN1 apoptotic chromatin condensation inducer 1 IEA Ensembl GO_REF:0000107 NCBI chr 7:75,951,203...75,989,234
Ensembl chr 7:75,951,203...75,989,231
JBrowse link
G DFFB DNA fragmentation factor subunit beta ISO (PMID:10959840) UniProtKB PMID:10959840 NCBI chr 6:65,310,868...65,323,816
Ensembl chr 6:65,310,863...65,323,816
JBrowse link
G ERN2 endoplasmic reticulum to nucleus signaling 2 IEA Ensembl GO_REF:0000107 NCBI chr 3:22,510,067...22,537,872
Ensembl chr 3:22,509,773...22,537,868
JBrowse link
G GPER1 G protein-coupled estrogen receptor 1 ISO PMID:23907461 UniProt PMID:23907461 RGD:8553942 NCBI chr 3:711,427...715,982
Ensembl chr 3:712,160...715,982
JBrowse link
G TOP2A DNA topoisomerase II alpha IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr12:22,001,300...22,028,452
Ensembl chr12:22,001,336...22,028,454
JBrowse link
CENP-A containing nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CENPP centromere protein P IEA InterPro GO_REF:0000002 NCBI chr 3:42,053,074...42,309,745
Ensembl chr 3:42,053,058...42,308,381
JBrowse link
G HJURP Holliday junction recognition protein IEA Ensembl GO_REF:0000107 NCBI chr15:134,106,561...134,123,163
Ensembl chr15:134,106,569...134,123,107
JBrowse link
G MIS18A MIS18 kinetochore protein A IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:195,912,044...195,928,309
Ensembl chr13:195,911,299...195,928,292
JBrowse link
G NASP nuclear autoantigenic sperm protein IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:165,773,964...165,804,978
Ensembl chr 6:165,770,055...165,805,369
JBrowse link
G OIP5 Opa interacting protein 5 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:130,036,478...130,054,058
Ensembl chr 1:130,036,480...130,047,043
JBrowse link
chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDAN1 codanin 1 IEA Ensembl GO_REF:0000107 NCBI chr 1:128,641,411...128,655,556
Ensembl chr 1:128,641,430...128,655,554
JBrowse link
G CHAF1A chromatin assembly factor 1 subunit A ISO (PMID:8858152) UniProtKB PMID:8858152 NCBI chr 2:74,380,706...74,411,875
Ensembl chr 2:74,380,708...74,411,825
JBrowse link
G CHAF1B chromatin assembly factor 1 subunit B ISO (PMID:8858152) UniProtKB PMID:8858152 NCBI chr13:200,048,096...200,074,902
Ensembl chr13:200,048,131...200,072,556
JBrowse link
G HMGB1 high mobility group box 1 ISO (MGI:MGI:3807115|PMID:18650382) UniProt PMID:18650382 MGI:MGI:3807115 NCBI chr11:7,195,556...7,321,071 JBrowse link
G NOC2L NOC2 like nucleolar associated transcriptional repressor IEA Ensembl GO_REF:0000107 NCBI chr 6:63,307,703...63,320,799
Ensembl chr 6:63,308,187...63,340,917
JBrowse link
G RBBP4 RB binding protein 4, chromatin remodeling factor ISO (PMID:8858152) UniProtKB PMID:8858152 NCBI chr 6:88,987,092...89,006,815 JBrowse link
G TP53 tumor protein p53 IEA Ensembl GO_REF:0000107 NCBI chr12:52,939,643...52,953,786
Ensembl chr12:52,939,643...52,953,819
JBrowse link
chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BANF1 BAF nuclear assembly factor 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:6,333,451...6,335,326 JBrowse link
G BANF2 BANF family member 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:26,138,520...26,175,665
Ensembl chr17:26,131,001...26,175,669
JBrowse link
G CDK1 cyclin dependent kinase 1 ISO RGD PMID:15695611 RGD:2301352 NCBI chr14:64,233,945...64,255,290
Ensembl chr14:64,233,988...64,395,453
JBrowse link
G H1-3 H1.3 linker histone, cluster member IBA (PMID:21873635) GO_Central PMID:21873635 Ensembl chr 7:20,862,942...20,882,693 JBrowse link
G H1-4 H1.4 linker histone, cluster member IBA (PMID:21873635) GO_Central PMID:21873635 Ensembl chr 7:20,819,639...20,854,590 JBrowse link
G H1-6 H1.6 linker histone, cluster member IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:20,774,135...20,777,244 JBrowse link
G H1FOO oocyte-specific H1 histone IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:68,921,491...68,943,061
Ensembl chr13:68,938,024...68,942,744
JBrowse link
G LOC100510904 histone H1.0 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:10,038,944...10,041,242
Ensembl chr 5:10,038,951...10,041,080
JBrowse link
G PRM1 protamine 1 IEA UniProt GO_REF:0000043 NCBI chr 3:31,861,087...31,861,529
Ensembl chr 3:31,861,128...31,861,385
JBrowse link
G PRM2 protamine 2 IEA UniProt GO_REF:0000043 NCBI chr 3:31,864,350...31,864,959
Ensembl chr 3:31,864,323...31,865,023
JBrowse link
G SMC2 structural maintenance of chromosomes 2 IEA UniProt GO_REF:0000043 NCBI chr 1:245,409,559...245,459,032
Ensembl chr 1:245,410,146...245,484,780
JBrowse link
G SMC5 structural maintenance of chromosomes 5 ISO (MGI:MGI:5882483|PMID:26919979) MGI PMID:26919979 MGI:MGI:5882483 NCBI chr 1:223,560,271...223,653,370 JBrowse link
G TOP2A DNA topoisomerase II alpha ISO (MGI:MGI:2158879|PMID:11835580) MGI PMID:11835580 MGI:MGI:2158879 NCBI chr12:22,001,300...22,028,452
Ensembl chr12:22,001,336...22,028,454
JBrowse link
DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DNMT3A DNA methyltransferase 3 alpha IEA Ensembl GO_REF:0000107 NCBI chr 3:113,501,972...113,609,148
Ensembl chr 3:113,528,926...113,609,139
JBrowse link
G DNMT3B DNA methyltransferase 3 beta ISO (MGI:MGI:3768461|PMID:17938196) MGI PMID:17938196 MGI:MGI:3768461 NCBI chr17:36,345,715...36,386,076
Ensembl chr17:36,332,801...36,386,074
JBrowse link
G HDAC1 histone deacetylase 1 IEA Ensembl GO_REF:0000107 NCBI chr 6:88,749,611...88,785,220
Ensembl chr 6:88,749,634...88,785,412
JBrowse link
G HELLS helicase, lymphoid specific IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:105,923,727...105,967,003
Ensembl chr14:105,923,552...105,966,998
JBrowse link
G MBD2 methyl-CpG binding domain protein 2 IEA Ensembl GO_REF:0000107 NCBI chr 1:103,683,077...103,768,372
Ensembl chr 1:103,683,065...103,752,427
JBrowse link
G MBD3 methyl-CpG binding domain protein 3 IEA Ensembl GO_REF:0000107 NCBI chr 2:76,913,880...76,923,435
Ensembl chr 2:76,906,644...76,923,435
JBrowse link
G SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 ISO (MGI:MGI:3611125|PMID:16322236) MGI PMID:16322236 MGI:MGI:3611125 NCBI chr 2:69,717,175...69,810,301
Ensembl chr 2:69,662,238...69,810,298
JBrowse link
DNA replication-dependent nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASF1A anti-silencing function 1A histone chaperone IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:43,200,339...43,215,019
Ensembl chr 1:43,200,414...43,214,913
JBrowse link
G ASF1B anti-silencing function 1B histone chaperone IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:65,063,186...65,072,681
Ensembl chr 2:65,062,766...65,072,681
JBrowse link
G CHAF1A chromatin assembly factor 1 subunit A IEA Ensembl GO_REF:0000107 NCBI chr 2:74,380,706...74,411,875
Ensembl chr 2:74,380,708...74,411,825
JBrowse link
G CHAF1B chromatin assembly factor 1 subunit B IEA Ensembl GO_REF:0000107 NCBI chr13:200,048,096...200,074,902
Ensembl chr13:200,048,131...200,072,556
JBrowse link
G HAT1 histone acetyltransferase 1 IEA Ensembl GO_REF:0000107 NCBI chr15:78,022,147...78,079,669
Ensembl chr15:78,022,154...78,079,665
JBrowse link
G HIST1H3E histone cluster 1, H3e ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 7:20,853,945...20,855,172
Ensembl chr 7:20,896,374...20,896,784
JBrowse link
G IPO4 importin 4 IEA Ensembl GO_REF:0000107 NCBI chr 7:75,109,844...75,118,739
Ensembl chr 7:75,100,272...75,118,741
JBrowse link
G LOC100158117 histone H4 IEA Ensembl GO_REF:0000107 NCBI chr 7:21,595,863...21,596,243 JBrowse link
G LOC100621389 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 4:99,208,554...99,208,961 JBrowse link
G LOC106504121 histone H3.1 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 7:20,872,535...20,875,411
Ensembl chr 7:20,896,374...20,896,784
JBrowse link
G LOC110261477 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 7:20,773,579...20,773,986 JBrowse link
G LOC110261673 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 7:20,910,487...20,912,374
Ensembl chr 7:20,908,345...20,912,379
JBrowse link
G LOC110261674 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 7:21,224,973...21,225,379 JBrowse link
G NASP nuclear autoantigenic sperm protein IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 6:165,773,964...165,804,978
Ensembl chr 6:165,770,055...165,805,369
JBrowse link
G RBBP4 RB binding protein 4, chromatin remodeling factor ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 6:88,987,092...89,006,815 JBrowse link
G TM9SF1 transmembrane 9 superfamily member 1 IEA Ensembl GO_REF:0000107 NCBI chr 7:75,103,971...75,110,027
Ensembl chr 7:75,100,272...75,118,741
JBrowse link
DNA replication-independent nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASF1A anti-silencing function 1A histone chaperone IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:43,200,339...43,215,019
Ensembl chr 1:43,200,414...43,214,913
JBrowse link
G ASF1B anti-silencing function 1B histone chaperone IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:65,063,186...65,072,681
Ensembl chr 2:65,062,766...65,072,681
JBrowse link
G ATRX ATRX chromatin remodeler IEA Ensembl GO_REF:0000107 NCBI chr  X:61,584,028...61,872,341
Ensembl chr  X:61,584,848...61,872,288
JBrowse link
G CABIN1 calcineurin binding protein 1 IEA InterPro
Ensembl
GO_REF:0000002, GO_REF:0000107 NCBI chr14:49,686,196...49,787,723
Ensembl chr14:49,686,197...49,787,688
JBrowse link
G H3-3A H3 histone, family 3A IEA Ensembl GO_REF:0000107 NCBI chr10:13,939,938...13,947,976
Ensembl chr10:13,939,594...13,948,000
JBrowse link
G HAT1 histone acetyltransferase 1 IEA Ensembl GO_REF:0000107 NCBI chr15:78,022,147...78,079,669
Ensembl chr15:78,022,154...78,079,665
JBrowse link
G HIRA histone cell cycle regulator IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:51,029,117...51,102,409
Ensembl chr14:51,029,126...51,102,506
JBrowse link
G IPO4 importin 4 IEA Ensembl GO_REF:0000107 NCBI chr 7:75,109,844...75,118,739
Ensembl chr 7:75,100,272...75,118,741
JBrowse link
G LOC100158117 histone H4 IEA Ensembl GO_REF:0000107 NCBI chr 7:21,595,863...21,596,243 JBrowse link
G LOC100521680 histone H3.3 IEA Ensembl GO_REF:0000107 NCBI chr12:5,632,326...5,634,977
Ensembl chr12:5,632,365...5,634,726
JBrowse link
G LOC100621389 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 4:99,208,554...99,208,961 JBrowse link
G LOC110261477 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 7:20,773,579...20,773,986 JBrowse link
G LOC110261673 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 7:20,910,487...20,912,374
Ensembl chr 7:20,908,345...20,912,379
JBrowse link
G LOC110261674 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 7:21,224,973...21,225,379 JBrowse link
G NASP nuclear autoantigenic sperm protein IEA Ensembl GO_REF:0000107 NCBI chr 6:165,773,964...165,804,978
Ensembl chr 6:165,770,055...165,805,369
JBrowse link
G RBBP4 RB binding protein 4, chromatin remodeling factor ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chr 6:88,987,092...89,006,815 JBrowse link
G TM9SF1 transmembrane 9 superfamily member 1 IEA Ensembl GO_REF:0000107 NCBI chr 7:75,103,971...75,110,027
Ensembl chr 7:75,100,272...75,118,741
JBrowse link
G UBN1 ubinuclein 1 IEA Ensembl GO_REF:0000107 NCBI chr 3:37,512,306...37,555,255
Ensembl chr 3:37,512,314...37,555,185
JBrowse link
heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAHD1 bromo adjacent homology domain containing 1 IEA Ensembl GO_REF:0000107 NCBI chr 1:130,849,835...130,874,735
Ensembl chr 1:130,849,835...130,878,321
JBrowse link
G BAZ2A bromodomain adjacent to zinc finger domain 2A ISO (MGI:MGI:4462332|PMID:20168299)
(MGI:MGI:3653583|PMID:16678107)
MGI PMID:16678107, PMID:20168299 MGI:MGI:3653583, MGI:MGI:4462332 NCBI chr 5:21,932,527...21,983,033
Ensembl chr 5:21,933,894...21,983,021
JBrowse link
G EZH1 enhancer of zeste 1 polycomb repressive complex 2 subunit ISO (MGI:MGI:3820717|PMID:19026781) ARUK-UCL PMID:19026781 MGI:MGI:3820717 NCBI chr12:20,107,744...20,139,764
Ensembl chr12:20,115,297...20,141,749
JBrowse link
G HMGA2 high mobility group AT-hook 2 ISO (PMID:16901784) UniProtKB PMID:16901784 NCBI chr 5:30,188,521...30,329,635 JBrowse link
G POLE3 DNA polymerase epsilon 3, accessory subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:254,033,378...254,036,224 JBrowse link
G SIRT1 sirtuin 1 ISO (PMID:15469825) BHF-UCL PMID:15469825 NCBI chr14:71,091,167...71,126,351
Ensembl chr14:71,091,157...71,123,299
JBrowse link
heterochromatin assembly by small RNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FAM172A family with sequence similarity 172 member A IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:100,477,770...100,893,594
Ensembl chr 2:100,477,775...100,893,580
JBrowse link
G NRDE2 NRDE-2, necessary for RNA interference, domain containing IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:112,039,949...112,090,632
Ensembl chr 7:112,038,234...112,090,511
JBrowse link
G TRMT10C tRNA methyltransferase 10C, mitochondrial RNase P subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:157,495,075...157,522,349
Ensembl chr13:157,497,562...157,504,418
JBrowse link
G ZNFX1 zinc finger NFX1-type containing 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:50,925,789...50,958,722
Ensembl chr17:50,925,789...50,958,705
JBrowse link
histone H3-S10 phosphorylation involved in chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCNB1 cyclin B1 IEA Ensembl GO_REF:0000107 NCBI chr16:47,338,239...47,348,385
Ensembl chr16:47,338,110...47,348,381
JBrowse link
G MIR744 microRNA mir-744 ISO (MGI:MGI:5494393|PMID:22053081) MGI PMID:22053081 MGI:MGI:5494393 NCBI chr12:56,464,848...56,464,927
Ensembl chr12:56,464,848...56,464,927
JBrowse link
inactivation of X chromosome by heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 IEA Ensembl GO_REF:0000107 NCBI chr 6:103,809,732...103,986,057
Ensembl chr 6:103,808,066...103,986,144
JBrowse link
meiotic chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G INCENP inner centromere protein IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:9,411,942...9,445,825
Ensembl chr 2:9,411,942...9,445,832
JBrowse link
G MASTL microtubule associated serine/threonine kinase like IMP (PMID:23843240) AgBase PMID:23843240 NCBI chr10:48,855,895...48,877,504
Ensembl chr10:48,856,072...48,880,475
JBrowse link
G NCAPD2 non-SMC condensin I complex subunit D2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:64,136,505...64,167,410
Ensembl chr 5:64,136,505...64,167,410
JBrowse link
G NCAPD3 non-SMC condensin II complex subunit D3 IEA
IBA
(PMID:21873635) UniProt
GO_Central
PMID:21873635 GO_REF:0000104 NCBI chr 9:60,712,416...60,785,907
Ensembl chr 9:60,712,420...60,785,901
JBrowse link
G NCAPH non-SMC condensin I complex subunit H IEA Ensembl GO_REF:0000107 NCBI chr 3:46,852,388...46,893,008
Ensembl chr 3:46,852,392...46,899,186
JBrowse link
G NCAPH2 non-SMC condensin II complex subunit H2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:222,784...233,491
Ensembl chr 5:221,466...233,475
JBrowse link
G SMC2 structural maintenance of chromosomes 2 IEA Ensembl GO_REF:0000107 NCBI chr 1:245,409,559...245,459,032
Ensembl chr 1:245,410,146...245,484,780
JBrowse link
G SMC4 structural maintenance of chromosomes 4 IEA Ensembl GO_REF:0000107 NCBI chr13:100,078,149...100,120,907
Ensembl chr13:100,078,158...100,133,166
JBrowse link
mitotic chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKAP8 A-kinase anchoring protein 8 IEA Ensembl GO_REF:0000107 NCBI chr 2:62,222,060...62,241,631
Ensembl chr 2:62,222,249...62,241,611
JBrowse link
G AKAP8L A-kinase anchoring protein 8 like IEA Ensembl GO_REF:0000107 NCBI chr 2:62,184,735...62,241,631
Ensembl chr 2:62,155,437...62,221,936
JBrowse link
G CDCA5 cell division cycle associated 5 IEA Ensembl GO_REF:0000107 NCBI chr 2:7,103,648...7,112,772
Ensembl chr 2:7,102,982...7,113,202
JBrowse link
G CHMP1A charged multivesicular body protein 1A IEA Ensembl GO_REF:0000107 NCBI chr 6:351,878...358,655
Ensembl chr 6:351,922...358,655
JBrowse link
G NCAPD2 non-SMC condensin I complex subunit D2 IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 5:64,136,505...64,167,410
Ensembl chr 5:64,136,505...64,167,410
JBrowse link
G NCAPD3 non-SMC condensin II complex subunit D3 IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 9:60,712,416...60,785,907
Ensembl chr 9:60,712,420...60,785,901
JBrowse link
G NCAPG non-SMC condensin I complex subunit G IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 8:12,759,225...12,807,164
Ensembl chr 8:12,759,639...12,810,050
JBrowse link
G NCAPH non-SMC condensin I complex subunit H IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 3:46,852,388...46,893,008
Ensembl chr 3:46,852,392...46,899,186
JBrowse link
G NCAPH2 non-SMC condensin II complex subunit H2 IEA Ensembl GO_REF:0000107 NCBI chr 5:222,784...233,491
Ensembl chr 5:221,466...233,475
JBrowse link
G NIPBL NIPBL cohesin loading factor IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:22,152,455...22,364,373
Ensembl chr16:22,152,501...22,363,847
JBrowse link
G NUSAP1 nucleolar and spindle associated protein 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:129,992,797...130,065,641 JBrowse link
G PHF13 PHD finger protein 13 IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr 6:67,445,960...67,452,144
Ensembl chr 6:67,445,977...67,454,191
JBrowse link
G SMC2 structural maintenance of chromosomes 2 IEA Ensembl GO_REF:0000107 NCBI chr 1:245,409,559...245,459,032
Ensembl chr 1:245,410,146...245,484,780
JBrowse link
G SMC4 structural maintenance of chromosomes 4 IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr13:100,078,149...100,120,907
Ensembl chr13:100,078,158...100,133,166
JBrowse link
G TTN titin ISO (PMID:9548712) BHF-UCL PMID:9548712 NCBI chr15:84,226,953...84,501,320 JBrowse link
negative regulation of chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H3-3A H3 histone, family 3A IEA Ensembl GO_REF:0000107 NCBI chr10:13,939,938...13,947,976
Ensembl chr10:13,939,594...13,948,000
JBrowse link
G LOC100521680 histone H3.3 IEA Ensembl GO_REF:0000107 NCBI chr12:5,632,326...5,634,977
Ensembl chr12:5,632,365...5,634,726
JBrowse link
negative regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AICDA activation induced cytidine deaminase IEA Ensembl GO_REF:0000107 NCBI chr 5:62,777,236...62,787,342
Ensembl chr 5:62,777,352...62,787,483
JBrowse link
G APOBEC1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 IEA Ensembl GO_REF:0000107 NCBI chr 5:62,811,819...62,820,532
Ensembl chr 5:62,810,879...62,820,173
JBrowse link
G TET1 tet methylcytosine dioxygenase 1 IEA Ensembl GO_REF:0000107 NCBI chr14:71,675,671...71,812,732
Ensembl chr14:71,675,671...71,815,621
JBrowse link
negative regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PHF2 PHD finger protein 2 IEA Ensembl GO_REF:0000107 NCBI chr 3:42,988,607...43,078,811
Ensembl chr 3:42,988,634...43,078,813
JBrowse link
G PHF8 PHD finger protein 8 IEA Ensembl GO_REF:0000107 NCBI chr  X:46,648,164...46,761,192
Ensembl chr  X:46,648,165...46,759,248
JBrowse link
nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANP32B acidic nuclear phosphoprotein 32 family member B ISO (PMID:20538007) UniProtKB PMID:20538007 NCBI chr 1:239,842,062...239,868,404
Ensembl chr 1:239,842,063...239,919,984
JBrowse link
G ASF1A anti-silencing function 1A histone chaperone ISO (PMID:11897662) MGI PMID:11897662 NCBI chr 1:43,200,339...43,215,019
Ensembl chr 1:43,200,414...43,214,913
JBrowse link
G ASF1B anti-silencing function 1B histone chaperone ISO (MGI:MGI:2675150|PMID:12842904) MGI PMID:12842904 MGI:MGI:2675150 NCBI chr 2:65,063,186...65,072,681
Ensembl chr 2:65,062,766...65,072,681
JBrowse link
G ATRX ATRX chromatin remodeler ISO (PMID:20651253) UniProtKB PMID:20651253 NCBI chr  X:61,584,028...61,872,341
Ensembl chr  X:61,584,848...61,872,288
JBrowse link
G BRD2 bromodomain containing 2 IEA Ensembl GO_REF:0000107 NCBI chr 7:25,096,579...25,162,591
Ensembl chr 7:25,150,658...25,165,433
JBrowse link
G CHAF1B chromatin assembly factor 1 subunit B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:200,048,096...200,074,902
Ensembl chr13:200,048,131...200,072,556
JBrowse link
G DAXX death domain associated protein IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:29,676,854...29,681,145
Ensembl chr 7:29,676,854...29,681,110
JBrowse link
G GRWD1 glutamate rich WD repeat containing 1 IEA Ensembl GO_REF:0000107 NCBI chr 6:53,849,673...53,856,229
Ensembl chr 6:53,849,850...53,859,385
JBrowse link
G H1-3 H1.3 linker histone, cluster member IEA InterPro GO_REF:0000002 Ensembl chr 7:20,862,942...20,882,693 JBrowse link
G H1-4 H1.4 linker histone, cluster member IEA InterPro GO_REF:0000002 Ensembl chr 7:20,819,639...20,854,590 JBrowse link
G H1-6 H1.6 linker histone, cluster member IEA InterPro GO_REF:0000002 NCBI chr 7:20,774,135...20,777,244 JBrowse link
G H1FOO oocyte-specific H1 histone IEA InterPro GO_REF:0000002 NCBI chr13:68,921,491...68,943,061
Ensembl chr13:68,938,024...68,942,744
JBrowse link
G H2AFY H2A histone family, member Y IEA UniProt GO_REF:0000104 NCBI chr 2:137,535,128...137,623,886
Ensembl chr 2:137,535,131...137,623,889
JBrowse link
G H2BC11 H2B clustered histone 11 IBA (PMID:21873635) GO_Central PMID:21873635 Ensembl chr 7:21,219,627...21,227,153 JBrowse link
G H3-3A H3 histone, family 3A ISO (PMID:21636898)
(PMID:25615412)
UniProtKB PMID:21636898, PMID:25615412 NCBI chr10:13,939,938...13,947,976
Ensembl chr10:13,939,594...13,948,000
JBrowse link
G HIST1H2BD histone cluster 1, H2bd IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:20,821,090...20,829,491
Ensembl chr 7:20,821,091...20,829,493
JBrowse link
G HIST1H3E histone cluster 1, H3e ISO (PMID:20498094), (PMID:21636898), (PMID:24699735)
(PMID:25615412)
UniProtKB PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr 7:20,853,945...20,855,172
Ensembl chr 7:20,896,374...20,896,784
JBrowse link
G HMGB1 high mobility group box 1 IDA (PMID:2465778) AgBase PMID:2465778 NCBI chr11:7,195,556...7,321,071 JBrowse link
G HMGB2 high mobility group box 2 IDA (PMID:2465778) AgBase PMID:2465778 NCBI chr14:16,709,966...16,712,288
Ensembl chr14:16,710,047...16,717,126
JBrowse link
G HP1BP3 heterochromatin protein 1 binding protein 3 IEA InterPro GO_REF:0000002 NCBI chr 6:78,975,551...79,007,921
Ensembl chr 6:78,975,550...79,007,214
JBrowse link
G KAT6B lysine acetyltransferase 6B IEA InterPro GO_REF:0000002 NCBI chr14:77,390,790...77,597,674
Ensembl chr14:77,375,758...77,597,674
JBrowse link
G LOC100152135 histone H2B type 1-A-like IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:20,465,043...20,466,398
Ensembl chr 7:20,465,129...20,465,512
JBrowse link
G LOC100152878 histone H2B type 1-A IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:20,467,395...20,471,314 JBrowse link
G LOC100155267 histone H2B type 2-F-like IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:45,760,877...45,761,561 JBrowse link
G LOC100156127 histone H2B type 1-M IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:20,842,185...20,842,659 JBrowse link
G LOC100156937 histone H2B type 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:20,862,784...20,863,395
Ensembl chr 7:20,897,623...20,907,522
JBrowse link
G LOC100158117 histone H4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:21,595,863...21,596,243 JBrowse link
G LOC100510904 histone H1.0 IEA InterPro GO_REF:0000002 NCBI chr 5:10,038,944...10,041,242
Ensembl chr 5:10,038,951...10,041,080
JBrowse link
G LOC100515302 histone H2B type 3-B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:51,687,852...51,694,237
Ensembl chr 2:51,693,136...51,693,516
JBrowse link
G LOC100517800 histone H2A-Bbd type 2/3 ISO (PMID:22795134) UniProtKB PMID:22795134 NCBI chr  X:125,277,575...125,280,752 JBrowse link
G LOC100519930 histone H2B subacrosomal variant-like IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:49,000,352...49,001,341 JBrowse link
G LOC100521680 histone H3.3 ISO (PMID:21636898)
(PMID:25615412)
UniProtKB PMID:21636898, PMID:25615412 NCBI chr12:5,632,326...5,634,977
Ensembl chr12:5,632,365...5,634,726
JBrowse link
G LOC100525798 nucleosome assembly protein 1-like 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:58,969,577...59,176,807
Ensembl chr  X:58,966,830...58,972,091
JBrowse link
G LOC100621389 histone H4 ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProtKB PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr 4:99,208,554...99,208,961 JBrowse link
G LOC100625034 testis-specific Y-encoded protein 4-like IEA InterPro GO_REF:0000002 NCBI chr  Y:40,190,400...40,192,431 JBrowse link
G LOC100738859 histone H2B type 2-E IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:99,169,471...99,171,665
Ensembl chr 4:99,169,485...99,186,310
JBrowse link
G LOC102160938 late histone H2B.L4-like IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:6,017,053...6,022,069
Ensembl chr18:6,019,516...6,022,049
JBrowse link
G LOC102161782 histone H3 ISO (PMID:21636898), (PMID:25615412) UniProtKB PMID:21636898, PMID:25615412 NCBI chr 4:99,187,225...99,187,722 JBrowse link
G LOC102162202 histone H2B type 2-E IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:99,189,505...99,191,226
Ensembl chr 4:99,169,485...99,186,310
JBrowse link
G LOC106504121 histone H3.1 ISO (PMID:25615412)
(PMID:20498094), (PMID:21636898), (PMID:24699735)
UniProtKB PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr 7:20,872,535...20,875,411
Ensembl chr 7:20,896,374...20,896,784
JBrowse link
G LOC106506652 putative testis-specific Y-encoded-like protein 3 IEA InterPro GO_REF:0000002 NCBI chr17:35,836,203...35,838,807 JBrowse link
G LOC110259305 histone H3.1 ISO (PMID:20498094)
(PMID:25615412)
UniProtKB PMID:20498094, PMID:25615412 NCBI chr 2:51,709,942...51,710,952 JBrowse link
G LOC110261477 histone H4 ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProtKB PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr 7:20,773,579...20,773,986 JBrowse link
G LOC110261673 histone H4 ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProtKB PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr 7:20,910,487...20,912,374
Ensembl chr 7:20,908,345...20,912,379
JBrowse link
G LOC110261674 histone H4 ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProtKB PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr 7:21,224,973...21,225,379 JBrowse link
G MACROH2A2 macroH2A.2 histone IEA UniProt GO_REF:0000104 NCBI chr14:73,002,385...73,055,228
Ensembl chr14:73,003,117...73,055,226
JBrowse link
G MCM2 minichromosome maintenance complex component 2 IEA Ensembl GO_REF:0000107 NCBI chr13:72,630,378...72,651,270
Ensembl chr13:72,630,380...72,657,620
JBrowse link
G NAA60 N-alpha-acetyltransferase 60, NatF catalytic subunit IEA Ensembl GO_REF:0000107 NCBI chr 3:38,763,444...38,812,862
Ensembl chr 3:38,755,420...38,782,056
JBrowse link
G NAP1L1 nucleosome assembly protein 1 like 1 IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 5:39,329,628...39,363,699
Ensembl chr 5:39,328,051...39,363,711
JBrowse link
G NAP1L4 nucleosome assembly protein 1 like 4 IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 2:2,070,140...2,117,503
Ensembl chr 2:2,067,870...2,117,487
JBrowse link
G NASP nuclear autoantigenic sperm protein ISO (PMID:25615412) UniProtKB PMID:25615412 NCBI chr 6:165,773,964...165,804,978
Ensembl chr 6:165,770,055...165,805,369
JBrowse link
G NEFH neurofilament heavy IEA InterPro GO_REF:0000002 NCBI chr14:46,559,698...46,568,686
Ensembl chr14:46,559,860...46,569,910
JBrowse link
G NPM1 nucleophosmin 1 ISO (PMID:11602260) UniProtKB PMID:11602260 NCBI chr16:52,767,263...52,781,862
Ensembl chr16:52,765,296...52,781,740
JBrowse link
G PADI4 peptidyl arginine deiminase 4 IEA Ensembl GO_REF:0000107 NCBI chr 6:75,935,909...75,966,275
Ensembl chr 6:75,935,903...75,966,169
JBrowse link
G RSF1 remodeling and spacing factor 1 IEA Ensembl GO_REF:0000107 NCBI chr 9:12,121,824...12,278,120
Ensembl chr 9:12,121,825...12,278,120
JBrowse link
G SART3 spliceosome associated factor 3, U4/U6 recycling protein IEA Ensembl GO_REF:0000107 NCBI chr14:42,223,752...42,259,992
Ensembl chr14:42,223,725...42,297,113
JBrowse link
G SET SET nuclear proto-oncogene IEA InterPro GO_REF:0000002 NCBI chr 1:269,050,447...269,064,462 JBrowse link
G SHPRH SNF2 histone linker PHD RING helicase IEA InterPro GO_REF:0000002 NCBI chr 1:19,612,915...19,697,444
Ensembl chr 1:19,612,823...19,695,272
JBrowse link
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 IEA Ensembl GO_REF:0000107 NCBI chr 8:84,184,572...84,224,943
Ensembl chr 8:84,184,575...84,224,871
JBrowse link
G SMYD3 SET and MYND domain containing 3 IEA Ensembl GO_REF:0000107 NCBI chr10:18,267,598...19,019,520
Ensembl chr10:18,267,603...19,019,537
JBrowse link
G SOX9 SRY-box transcription factor 9 ISS
IEA
UniProt
Ensembl
GO_REF:0000024, GO_REF:0000107 NCBI chr12:8,642,154...8,647,315
Ensembl chr12:8,642,158...8,647,315
JBrowse link
G SPTY2D1 SPT2 chromatin protein domain containing 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:40,581,816...40,604,040 JBrowse link
G TSPYL1 TSPY like 1 IEA InterPro GO_REF:0000002 NCBI chr 1:81,906,168...81,909,461
Ensembl chr 1:81,908,075...81,909,613
JBrowse link
G TSPYL2 TSPY like 2 IEA InterPro GO_REF:0000002 NCBI chr  X:45,909,688...45,916,859
Ensembl chr  X:45,909,686...45,916,941
JBrowse link
G TSPYL5 TSPY like 5 IEA InterPro GO_REF:0000002 NCBI chr 4:39,362,945...39,367,405
Ensembl chr 4:39,362,962...39,369,885
JBrowse link
nucleosome positioning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTCF CCCTC-binding factor IEA Ensembl GO_REF:0000107 NCBI chr 6:28,188,002...28,261,009
Ensembl chr 6:28,195,668...28,261,009
JBrowse link
G H1-2 H1.2 linker histone, cluster member ISO (MGI:MGI:2664444|PMID:12808097) MGI PMID:12808097 MGI:MGI:2664444 NCBI chr 7:20,743,716...20,744,356
Ensembl chr 7:20,743,716...20,744,356
JBrowse link
G H1-3 H1.3 linker histone, cluster member IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 Ensembl chr 7:20,862,942...20,882,693 JBrowse link
G H1-4 H1.4 linker histone, cluster member IBA (PMID:21873635) GO_Central PMID:21873635 Ensembl chr 7:20,819,639...20,854,590 JBrowse link
G H1-6 H1.6 linker histone, cluster member IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:20,774,135...20,777,244 JBrowse link
G H1FOO oocyte-specific H1 histone ISS
IBA
(PMID:21873635) UniProt
GO_Central
PMID:21873635 GO_REF:0000024 NCBI chr13:68,921,491...68,943,061
Ensembl chr13:68,938,024...68,942,744
JBrowse link
G LOC100510904 histone H1.0 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:10,038,944...10,041,242
Ensembl chr 5:10,038,951...10,041,080
JBrowse link
G PAF1 PAF1 homolog, Paf1/RNA polymerase II complex component IEA Ensembl GO_REF:0000107 NCBI chr 6:48,046,487...48,053,631
Ensembl chr 6:48,046,691...48,059,035
JBrowse link
G RSF1 remodeling and spacing factor 1 IEA Ensembl GO_REF:0000107 NCBI chr 9:12,121,824...12,278,120
Ensembl chr 9:12,121,825...12,278,120
JBrowse link
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 IEA Ensembl GO_REF:0000107 NCBI chr 8:84,184,572...84,224,943
Ensembl chr 8:84,184,575...84,224,871
JBrowse link
pericentric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CENPV centromere protein V IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:59,200,041...59,215,941
Ensembl chr12:59,200,031...59,209,664
JBrowse link
G DICER1 dicer 1, ribonuclease III ISO (MGI:MGI:3528782|PMID:15713842) MGI PMID:15713842 MGI:MGI:3528782 NCBI chr 7:116,361,630...116,436,471
Ensembl chr 7:116,361,630...116,436,519
JBrowse link
G H3-3A H3 histone, family 3A IEA Ensembl GO_REF:0000107 NCBI chr10:13,939,938...13,947,976
Ensembl chr10:13,939,594...13,948,000
JBrowse link
G HELLS helicase, lymphoid specific IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:105,923,727...105,967,003
Ensembl chr14:105,923,552...105,966,998
JBrowse link
G LOC100521680 histone H3.3 IEA Ensembl GO_REF:0000107 NCBI chr12:5,632,326...5,634,977
Ensembl chr12:5,632,365...5,634,726
JBrowse link
positive regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATF7IP activating transcription factor 7 interacting protein IEA Ensembl GO_REF:0000107 NCBI chr 5:58,022,734...58,149,980
Ensembl chr 5:58,022,740...58,150,185
JBrowse link
G DNMT1 DNA methyltransferase 1 IEA Ensembl GO_REF:0000107 NCBI chr 2:68,981,564...69,040,364
Ensembl chr 2:68,981,564...69,029,919
JBrowse link
G MORC2 MORC family CW-type zinc finger 2 IEA Ensembl GO_REF:0000107 NCBI chr14:47,755,264...47,800,432
Ensembl chr14:47,754,282...47,799,643
JBrowse link
G MPHOSPH8 M-phase phosphoprotein 8 IEA Ensembl GO_REF:0000107 NCBI chr11:447,019...480,121
Ensembl chr11:447,052...480,121
JBrowse link
G PPHLN1 periphilin 1 IEA Ensembl GO_REF:0000107 NCBI chr 5:73,556,205...73,696,403
Ensembl chr 5:73,496,820...73,709,342
JBrowse link
G RESF1 retroelement silencing factor 1 ISO (MGI:MGI:6271895|PMID:29728365) UniProt PMID:29728365 MGI:MGI:6271895 NCBI chr 5:42,263,560...42,299,596
Ensembl chr 5:42,261,290...42,299,514
JBrowse link
G SETDB1 SET domain bifurcated histone lysine methyltransferase 1 IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr 4:98,259,801...98,293,238
Ensembl chr 4:98,260,373...98,293,096
JBrowse link
G TASOR transcription activation suppressor IEA Ensembl GO_REF:0000107 NCBI chr13:38,491,048...38,557,256
Ensembl chr13:38,491,055...38,557,931
JBrowse link
G TRIM28 tripartite motif containing 28 IEA Ensembl GO_REF:0000107 NCBI chr 6:63,094,382...63,101,532
Ensembl chr 6:63,094,648...63,101,532
JBrowse link
G ZNF304 zinc finger protein 304 ISO (PMID:24623306) UniProtKB PMID:24623306 NCBI chr 6:61,740,677...61,790,290
Ensembl chr 6:61,695,111...61,784,106
JBrowse link
positive regulation of heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TPR translocated promoter region, nuclear basket protein IEA Ensembl GO_REF:0000107 NCBI chr 9:127,481,678...127,540,393
Ensembl chr 9:127,481,684...127,540,790
JBrowse link
positive regulation of subtelomeric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SIRT6 sirtuin 6 IEA Ensembl GO_REF:0000107 NCBI chr 2:74,568,539...74,577,774
Ensembl chr 2:74,568,436...74,577,772
JBrowse link
rDNA condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NIPBL NIPBL cohesin loading factor IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:22,152,455...22,364,373
Ensembl chr16:22,152,501...22,363,847
JBrowse link
rDNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAZ2A bromodomain adjacent to zinc finger domain 2A ISO (MGI:MGI:4462332|PMID:20168299)
(MGI:MGI:3587127|PMID:16085498), (MGI:MGI:3653583|PMID:16678107), (MGI:MGI:3852313|PMID:12198165), (MGI:MGI:3852588|PMID:19578370)
MGI PMID:12198165, PMID:16085498, PMID:16678107, PMID:19578370, PMID:20168299 MGI:MGI:3587127, MGI:MGI:3653583, MGI:MGI:3852313, MGI:MGI:3852588, MGI:MGI:4462332 NCBI chr 5:21,932,527...21,983,033
Ensembl chr 5:21,933,894...21,983,021
JBrowse link
G BEND3 BEN domain containing 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:73,184,745...73,224,663
Ensembl chr 1:73,184,753...73,360,113
JBrowse link
G RRP8 ribosomal RNA processing 8 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 9:3,152,162...3,169,380
Ensembl chr 9:3,150,877...3,162,562
JBrowse link
G SIRT1 sirtuin 1 IEA Ensembl GO_REF:0000107 NCBI chr14:71,091,167...71,126,351
Ensembl chr14:71,091,157...71,123,299
JBrowse link
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 IEA Ensembl GO_REF:0000107 NCBI chr 8:84,184,572...84,224,943
Ensembl chr 8:84,184,575...84,224,871
JBrowse link
G SUV39H1 suppressor of variegation 3-9 homolog 1 IEA Ensembl GO_REF:0000107 NCBI chr  X:42,797,309...42,811,457
Ensembl chr  X:42,797,828...42,814,003
JBrowse link
G UBTF upstream binding transcription factor ISO (MGI:MGI:3836497|PMID:19103806) MGI PMID:19103806 MGI:MGI:3836497 NCBI chr12:18,989,833...19,006,145
Ensembl chr12:18,989,836...19,006,141
JBrowse link
regulation of chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PARP10 poly(ADP-ribose) polymerase family member 10 ISO (PMID:15674325) UniProtKB PMID:15674325 NCBI chr 4:688,511...695,808 JBrowse link
G SPTY2D1 SPT2 chromatin protein domain containing 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:40,581,816...40,604,040 JBrowse link
regulation of chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCNB1 cyclin B1 ISO positive regulation RGD PMID:15291744 RGD:1578405 NCBI chr16:47,338,239...47,348,385
Ensembl chr16:47,338,110...47,348,381
JBrowse link
G MCPH1 microcephalin 1 IEA Ensembl GO_REF:0000107 NCBI chr15:37,455,186...37,674,971
Ensembl chr15:37,455,526...37,673,663
JBrowse link
G WAPL WAPL cohesin release factor IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr14:87,492,452...87,588,678
Ensembl chr14:87,492,453...87,588,570
JBrowse link
regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POU5F1 POU class 5 homeobox 1 ISO (PMID:19736317) BHF-UCL PMID:19736317 NCBI chr 7:23,564,654...23,570,691 JBrowse link
regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H2AFY H2A histone family, member Y NOT ISO (PMID:24071584) UniProtKB PMID:24071584 NCBI chr 2:137,535,128...137,623,886
Ensembl chr 2:137,535,131...137,623,889
JBrowse link
G NAA40 N-alpha-acetyltransferase 40, NatD catalytic subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:8,115,288...8,130,075
Ensembl chr 2:8,115,288...8,129,973
JBrowse link
senescence-associated heterochromatin focus assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HMGA1 high mobility group AT-hook 1 ISO (PMID:16901784) UniProtKB PMID:16901784 NCBI chr 7:30,320,090...30,329,413 JBrowse link
G HMGA2 high mobility group AT-hook 2 ISO (PMID:16901784) UniProtKB PMID:16901784 NCBI chr 5:30,188,521...30,329,635 JBrowse link
G P14ARF p14ARF protein IEA Ensembl GO_REF:0000107 NCBI chr 1:200,774,496...200,799,149
Ensembl chr 1:200,774,496...200,798,854
JBrowse link
sperm chromatin condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FSHR follicle stimulating hormone receptor ISO (MGI:MGI:1855818|PMID:10775161) MGI PMID:10775161 MGI:MGI:1855818 NCBI chr 3:91,607,236...91,775,255
Ensembl chr 3:91,607,305...91,774,683
JBrowse link
G LOC100516553 testis-specific H1 histone ISO (MGI:MGI:3531623|PMID:15710904) UniProtKB PMID:15710904 MGI:MGI:3531623 NCBI chr 5:78,699,291...78,700,227
Ensembl chr 5:78,699,128...78,700,333
JBrowse link
G SELENOF selenoprotein F ISO RGD PMID:11344099 RGD:728803 NCBI chr 4:129,258,943...129,287,727
Ensembl chr 4:129,258,944...129,287,720
JBrowse link
G SYCP1 synaptonemal complex protein 1 IEA Ensembl GO_REF:0000107 NCBI chr 4:105,592,354...105,730,413
Ensembl chr 4:105,592,691...105,729,774
JBrowse link
G SYCP3 synaptonemal complex protein 3 ISO (MGI:MGI:5315075|PMID:22164254) MGI PMID:22164254 MGI:MGI:5315075 NCBI chr 5:82,492,744...82,501,068
Ensembl chr 5:82,493,142...82,501,225
JBrowse link
G TSSK6 testis specific serine kinase 6 IEA Ensembl GO_REF:0000107 NCBI chr 2:58,411,122...58,411,943
Ensembl chr 2:58,411,122...58,411,943
JBrowse link
spermatogenesis, exchange of chromosomal proteins term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHD5 chromodomain helicase DNA binding protein 5 ISO (MGI:MGI:5559810|PMID:24252660) UniProtKB PMID:24252660 MGI:MGI:5559810 NCBI chr 6:67,017,410...67,086,685
Ensembl chr 6:67,017,425...67,087,043
JBrowse link
G FSHR follicle stimulating hormone receptor IEA Ensembl GO_REF:0000107 NCBI chr 3:91,607,236...91,775,255
Ensembl chr 3:91,607,305...91,774,683
JBrowse link
G LOC100152135 histone H2B type 1-A-like IEA Ensembl GO_REF:0000107 NCBI chr 7:20,465,043...20,466,398
Ensembl chr 7:20,465,129...20,465,512
JBrowse link
G PIWIL1 piwi like RNA-mediated gene silencing 1 IEA Ensembl GO_REF:0000107 NCBI chr14:24,729,346...24,760,056
Ensembl chr14:24,730,053...24,760,013
JBrowse link
G PSME4 proteasome activator subunit 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:87,231,510...87,337,709
Ensembl chr 3:87,231,534...87,337,703
JBrowse link
G RNF8 ring finger protein 8 ISO (MGI:MGI:5905675|PMID:28552346) UniProtKB PMID:28552346 MGI:MGI:5905675 NCBI chr 7:32,931,786...32,969,536
Ensembl chr 7:32,931,786...33,063,739
JBrowse link
G SYCP3 synaptonemal complex protein 3 IEA Ensembl GO_REF:0000107 NCBI chr 5:82,492,744...82,501,068
Ensembl chr 5:82,493,142...82,501,225
JBrowse link
G TNP1 transition protein 1 ISS UniProt GO_REF:0000024 NCBI chr15:119,037,492...119,038,099
Ensembl chr15:119,037,496...119,038,105
JBrowse link
G TNP2 transition protein 2 ISS UniProt GO_REF:0000024 NCBI chr 3:31,868,517...31,871,530
Ensembl chr 3:31,870,068...31,871,702
JBrowse link
subtelomeric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H3-3A H3 histone, family 3A IEA Ensembl GO_REF:0000107 NCBI chr10:13,939,938...13,947,976
Ensembl chr10:13,939,594...13,948,000
JBrowse link
G LOC100521680 histone H3.3 IEA Ensembl GO_REF:0000107 NCBI chr12:5,632,326...5,634,977
Ensembl chr12:5,632,365...5,634,726
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16525
    cellular process 15757
      cellular component organization or biogenesis 5964
        cellular component organization 5795
          organelle organization 3645
            chromosome organization 1086
              DNA conformation change 254
                DNA packaging 174
                  chromatin assembly + 129
                  chromosome condensation + 39
                  nonrepetitive DNA condensation 0
                  nucleoid DNA packaging + 0
                  rDNA condensation 1
                  sperm chromatin condensation + 13
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.