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ONTOLOGY REPORT - ANNOTATIONS


Term:DNA packaging
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Accession:GO:0006323 term browser browse the term
Definition:Any process in which DNA and associated proteins are formed into a compact, orderly structure.
Synonyms:exact_synonym: DNA condensation;   DNA organisation;   DNA organization


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DNA packaging term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H2bc1 H2B clustered histone 1 ISO (MGI:MGI:3702345|PMID:17261847) RGD PMID:17261847 MGI:MGI:3702345 NCBI chr17:43,423,111...43,423,580
Ensembl chr17:43,423,111...43,423,580
JBrowse link
G LOC100363125 rCG42854-like ISO (MGI:MGI:3702345|PMID:17261847) RGD PMID:17261847 MGI:MGI:3702345 NCBI chr  X:13,991,860...13,992,606
Ensembl chr  X:13,992,064...13,992,429
JBrowse link
apoptotic chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acin1 apoptotic chromatin condensation inducer 1 ISO (PMID:10490026) RGD PMID:10490026 NCBI chr15:33,288,369...33,333,256
Ensembl chr15:33,288,374...33,333,417
JBrowse link
G Dffb DNA fragmentation factor subunit beta ISO (PMID:10959840) RGD PMID:10959840 NCBI chr 5:171,250,559...171,261,875
Ensembl chr 5:171,249,633...171,262,119
JBrowse link
G Ern2 endoplasmic reticulum to nucleus signaling 2 ISO (PMID:11175748) RGD PMID:11175748 NCBI chr 1:192,126,023...192,142,865
Ensembl chr 1:192,126,023...192,142,854
JBrowse link
G Gper1 G protein-coupled estrogen receptor 1 IDA PMID:23907461 UniProt PMID:23907461 RGD:8553942 NCBI chr12:17,309,122...17,315,267
Ensembl chr12:17,309,834...17,311,112
JBrowse link
G Top2a DNA topoisomerase II alpha IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(PMID:10959840)
Ensembl
RGD
PMID:10959840, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr10:86,901,467...86,930,947
Ensembl chr10:86,901,007...86,932,154
JBrowse link
CENP-A containing nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cenpp centromere protein P IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:15,429,526...15,603,197
Ensembl chr17:15,429,708...15,603,199
JBrowse link
G Hjurp Holliday junction recognition protein ISO (PMID:19410544), (PMID:19410545) RGD PMID:19410544, PMID:19410545 NCBI chr 9:95,347,739...95,362,228
Ensembl chr 9:95,349,086...95,362,014
JBrowse link
G Itgb3bp integrin subunit beta 3 binding protein IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:118,476,410...118,541,928
Ensembl chr 5:118,476,430...118,673,780
JBrowse link
G Mis18a MIS18 kinetochore protein A ISO
IBA
MGI:MGI:5441069 (MGI:MGI:5438906|PMID:22516971)
PMID:21873635
RGD PMID:22516971, PMID:21873635 MGI:MGI:5438906, RGD:13792537 NCBI chr11:30,880,231...30,893,262
Ensembl chr11:30,879,887...30,893,310
JBrowse link
G Nasp nuclear autoantigenic sperm protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:135,446,485...135,472,113
Ensembl chr 5:135,446,962...135,472,116
JBrowse link
G Oip5 Opa interacting protein 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:111,413,662...111,422,320
Ensembl chr 3:111,416,536...111,422,203
JBrowse link
chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdan1 codanin 1 ISO (PMID:22407294) RGD PMID:22407294 NCBI chr 3:112,660,839...112,676,596
Ensembl chr 3:112,663,383...112,676,556
JBrowse link
G Chaf1a chromatin assembly factor 1 subunit A ISO (PMID:8858152) RGD PMID:8858152 NCBI chr 9:11,000,869...11,027,631
Ensembl chr 9:11,001,129...11,027,506
JBrowse link
G Chaf1b chromatin assembly factor 1 subunit B ISO (PMID:8858152) RGD PMID:8858152 NCBI chr11:34,101,248...34,121,371
Ensembl chr11:34,101,197...34,121,378
JBrowse link
G Hmgb1 high mobility group box 1 ISO (MGI:MGI:3807115|PMID:18650382) RGD PMID:18650382 MGI:MGI:3807115 NCBI chr12:7,082,529...7,090,246
Ensembl chr16:37,500,017...37,502,237
JBrowse link
G Noc2l NOC2-like nucleolar associated transcriptional repressor ISO (PMID:16322561) RGD PMID:16322561 NCBI chr 5:173,659,796...173,672,699
Ensembl chr 5:173,660,921...173,672,459
JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor ISO (PMID:8858152) RGD PMID:8858152 NCBI chr 5:147,499,880...147,535,240
Ensembl chr 5:147,499,882...147,535,240
JBrowse link
G Tp53 tumor protein p53 ISO (PMID:16322561) RGD PMID:16322561 NCBI chr10:56,186,299...56,198,449
Ensembl chr10:56,187,020...56,198,449
JBrowse link
chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Banf1 BAF nuclear assembly factor 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:220,744,195...220,746,224
Ensembl chr 1:220,744,195...220,746,224
JBrowse link
G Banf2 BANF family member 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:138,128,123...138,183,750
Ensembl chr 3:138,174,054...138,183,696
JBrowse link
G Cdk1 cyclin-dependent kinase 1 IMP RGD PMID:15695611 RGD:2301352 NCBI chr20:20,576,341...20,591,510
Ensembl chr20:20,576,377...20,591,549
JBrowse link
G H1f0 H1 histone family, member 0 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:120,260,776...120,262,636 JBrowse link
G H1f1 H1.1 linker histone, cluster member IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:43,614,101...43,614,844
Ensembl chr17:43,614,101...43,614,844
JBrowse link
G H1f10 H1.10 linker histone IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:119,889,016...119,892,661
Ensembl chr 4:119,889,371...119,889,949
JBrowse link
G H1f2 H1.2 linker histone, cluster member IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:43,638,938...43,640,445
Ensembl chr17:43,639,749...43,640,387
JBrowse link
G H1f4 H1.4 linker histone, cluster member TAS
IBA
PMID:21873635 RGD
GO_Central
PMID:12211017, PMID:21873635 RGD:1300396, RGD:13792537 NCBI chr17:43,734,461...43,735,120
Ensembl chr17:43,734,461...43,735,120
JBrowse link
G H1f5 H1.5 linker histone, cluster member IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:44,766,313...44,766,981
Ensembl chr17:44,766,313...44,766,981
JBrowse link
G H1f6 H1.6 linker histone, cluster member IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:43,675,190...43,675,934
Ensembl chr17:43,675,190...43,675,934
JBrowse link
G H1f7 H1.7 linker histone IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:139,871,491...139,872,858
Ensembl chr 7:139,871,479...139,872,900
JBrowse link
G H1f8 H1.8 linker histone IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:147,844,658...147,849,779
Ensembl chr 4:147,844,658...147,849,779
JBrowse link
G H4f3 H1.3 linker histone, cluster member IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:43,797,711...43,798,450
Ensembl chr17:43,797,721...43,798,383
JBrowse link
G Hils1 histone linker H1 domain, spermatid-specific 1 ISO
IBA
(PMID:12920187)
PMID:21873635
RGD PMID:12920187, PMID:21873635 RGD:13792537 NCBI chr10:82,775,691...82,776,487
Ensembl chr10:82,775,691...82,776,487
JBrowse link
G Prm1 protamine 1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:4,945,995...4,946,241
Ensembl chr10:4,945,911...4,946,397
JBrowse link
G Prm2 protamine 2 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:4,950,484...4,950,920
Ensembl chr10:4,950,484...4,950,920
JBrowse link
G Prm3 protamine 3 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:4,951,557...4,952,071
Ensembl chr10:4,951,557...4,952,071
JBrowse link
G Rock2 Rho-associated coiled-coil containing protein kinase 2 TAS RGD PMID:12126956 RGD:633802 NCBI chr 6:42,180,864...42,289,910
Ensembl chr 6:42,180,894...42,289,908
JBrowse link
G Smc5 structural maintenance of chromosomes 5 ISO MGI:MGI:5882566 (MGI:MGI:5882483|PMID:26919979) RGD PMID:26919979 MGI:MGI:5882483 NCBI chr 1:240,977,898...241,046,273
Ensembl chr 1:240,977,898...241,046,256
JBrowse link
G Top2a DNA topoisomerase II alpha ISO (MGI:MGI:2158879|PMID:11835580) RGD PMID:11835580 MGI:MGI:2158879 NCBI chr10:86,901,467...86,930,947
Ensembl chr10:86,901,007...86,932,154
JBrowse link
DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt3a DNA methyltransferase 3 alpha ISO MGI:MGI:1261819 (MGI:MGI:3611125|PMID:16322236), (MGI:MGI:3768461|PMID:17938196) RGD PMID:16322236, PMID:17938196 MGI:MGI:3611125, MGI:MGI:3768461 NCBI chr 6:28,205,375...28,346,052
Ensembl chr 6:28,235,695...28,340,577
JBrowse link
G Dnmt3b DNA methyltransferase 3 beta ISO MGI:MGI:1261827 (MGI:MGI:3768461|PMID:17938196) RGD PMID:17938196 MGI:MGI:3768461 NCBI chr 3:149,131,541...149,170,061
Ensembl chr 3:149,131,785...149,208,786
JBrowse link
G Hdac1 histone deacetylase 1 ISO UniProtKB:Q9UBB5 (PMID:23770133) RGD PMID:23770133 NCBI chr 5:147,716,664...147,743,723
Ensembl chr 5:147,716,664...147,743,723
JBrowse link
G Hells helicase, lymphoid specific ISO
IBA
(MGI:MGI:3573964|PMID:15647320)
PMID:21873635
RGD PMID:15647320, PMID:21873635 MGI:MGI:3573964, RGD:13792537 NCBI chr 1:257,901,856...257,953,889
Ensembl chr 1:257,766,691...257,949,183
Ensembl chr 1:257,766,691...257,949,183
JBrowse link
G LOC100911660 lymphocyte-specific helicase-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:257,614,688...257,660,184
Ensembl chr 1:257,766,691...257,949,183
Ensembl chr 1:257,766,691...257,949,183
JBrowse link
G Mbd2 methyl-CpG binding domain protein 2 ISO UniProtKB:Q13547 (PMID:23770133) RGD PMID:23770133 NCBI chr18:65,814,026...65,885,115
Ensembl chr18:65,814,026...65,885,114
JBrowse link
G Mbd3 methyl-CpG binding domain protein 3 ISO (MGI:MGI:3611125|PMID:16322236) RGD PMID:16322236 MGI:MGI:3611125 NCBI chr 7:12,179,046...12,186,251
Ensembl chr 7:12,179,203...12,186,656
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 ISO (MGI:MGI:3611125|PMID:16322236) RGD PMID:16322236 MGI:MGI:3611125 NCBI chr 8:22,648,323...22,739,468
Ensembl chr 8:22,648,323...22,739,468
JBrowse link
DNA replication-dependent nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asf1a anti-silencing function 1A histone chaperone ISO
IBA
(PMID:14718166)
PMID:21873635
RGD PMID:14718166, PMID:21873635 RGD:13792537 NCBI chr20:34,894,419...34,909,265
Ensembl chr20:34,894,419...34,909,265
JBrowse link
G Asf1b anti-silencing function 1B histone chaperone ISO
IBA
(PMID:14718166)
PMID:21873635
RGD PMID:14718166, PMID:21873635 RGD:13792537 NCBI chr19:25,077,918...25,092,491
Ensembl chr19:25,077,918...25,092,491
JBrowse link
G Chaf1a chromatin assembly factor 1 subunit A ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 9:11,000,869...11,027,631
Ensembl chr 9:11,001,129...11,027,506
JBrowse link
G Chaf1b chromatin assembly factor 1 subunit B ISO (PMID:14718166) RGD PMID:14718166 NCBI chr11:34,101,248...34,121,371
Ensembl chr11:34,101,197...34,121,378
JBrowse link
G H3c1 H3 clustered histone 1 ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:43,616,206...43,616,735
Ensembl chr17:44,839,721...44,840,131
Ensembl chr17:44,839,721...44,840,131
Ensembl chr17:44,839,721...44,840,131
Ensembl chr17:44,839,721...44,840,131
JBrowse link
G Hat1 histone acetyltransferase 1 ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 3:58,022,395...58,070,067
Ensembl chr 3:58,022,238...58,070,068
JBrowse link
G Hist1h2ail1 histone cluster 1 H2a family member I like 1 ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:43,814,773...43,815,183
Ensembl chr17:43,814,773...43,815,183
Ensembl chr17:43,814,773...43,815,183
JBrowse link
G Hist1h3b histone cluster 1, H3b ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:44,760,023...44,764,058
Ensembl chr17:44,839,721...44,840,131
Ensembl chr17:44,839,721...44,840,131
Ensembl chr17:44,839,721...44,840,131
Ensembl chr17:44,839,721...44,840,131
JBrowse link
G Hist1h4b histone cluster 1 H4 family member B ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:44,522,144...44,526,587
Ensembl chr17:44,522,140...44,526,583
JBrowse link
G Hist1h4m histone cluster 1, H4m ISO (PMID:14718166) RGD PMID:14718166 Ensembl chr17:44,815,684...44,815,995 JBrowse link
G Hist2h4 histone cluster 2, H4 ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 2:198,411,955...198,412,350
Ensembl chr 2:198,411,955...198,412,350
JBrowse link
G Hist2h4a histone cluster 2 H4 family member A ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 4:170,800,539...170,800,979
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr 2:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
JBrowse link
G Ipo4 importin 4 ISO (PMID:14718166) RGD PMID:14718166 NCBI chr15:34,304,425...34,314,552
Ensembl chr15:34,304,425...34,314,345
JBrowse link
G LOC100912290 histone H4-like ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 4:170,092,457...170,117,607 JBrowse link
G LOC102548682 histone H4-like ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:43,616,218...43,673,659
Ensembl chr17:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr 2:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr 2:43,791,657...43,792,067
Ensembl chr 2:43,791,657...43,792,067
JBrowse link
G LOC102551184 histone H4-like ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:43,770,198...43,821,579 JBrowse link
G LOC684819 similar to H3 histone, family 2 isoform 2 ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:43,794,397...43,795,493 JBrowse link
G Nasp nuclear autoantigenic sperm protein ISO
ISS
IBA
(PMID:14718166)
(MGI:MGI:3694318|PMID:16728391)
GO_REF:0000024
PMID:21873635
RGD
UniProt
PMID:14718166, PMID:16728391, PMID:21873635 GO_REF:0000024, MGI:MGI:3694318, RGD:13792537 NCBI chr 5:135,446,485...135,472,113
Ensembl chr 5:135,446,962...135,472,116
JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 5:147,499,880...147,535,240
Ensembl chr 5:147,499,882...147,535,240
JBrowse link
G RGD1562378 histone H4 variant H4-v.1 ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 4:170,762,862...170,763,962
Ensembl chr 4:170,763,605...170,763,916
JBrowse link
DNA replication-independent nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asf1a anti-silencing function 1A histone chaperone ISO
IBA
(PMID:14718166)
PMID:21873635
RGD PMID:14718166, PMID:21873635 RGD:13792537 NCBI chr20:34,894,419...34,909,265
Ensembl chr20:34,894,419...34,909,265
JBrowse link
G Asf1b anti-silencing function 1B histone chaperone ISO
IBA
(PMID:14718166)
PMID:21873635
RGD PMID:14718166, PMID:21873635 RGD:13792537 NCBI chr19:25,077,918...25,092,491
Ensembl chr19:25,077,918...25,092,491
JBrowse link
G Atrx ATRX, chromatin remodeler IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:22391447)
Ensembl
UniProt
RGD
PMID:22391447 GO_REF:0000024, GO_REF:0000107 NCBI chr  X:76,820,110...76,979,155
Ensembl chr  X:76,692,970...76,708,878
Ensembl chr  X:76,692,970...76,708,878
JBrowse link
G Cabin1 calcineurin binding protein 1 IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(PMID:14718166)
GO_REF:0000002
Ensembl
RGD
InterPro
PMID:14718166, PMID:21873635 GO_REF:0000002, GO_REF:0000107, RGD:13792537 NCBI chr20:13,836,032...13,963,003
Ensembl chr20:13,836,030...13,963,003
JBrowse link
G H3f3a H3 histone family member 3A ISO (PMID:14718166) RGD PMID:14718166 NCBI chr13:99,091,246...99,102,828
Ensembl chr13:99,091,763...99,101,208
JBrowse link
G H3f3b H3 histone family member 3B ISO (PMID:14718166) RGD PMID:14718166 NCBI chr10:104,573,666...104,575,890
Ensembl chr10:104,573,664...104,575,890
JBrowse link
G Hat1 histone acetyltransferase 1 ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 3:58,022,395...58,070,067
Ensembl chr 3:58,022,238...58,070,068
JBrowse link
G Hira histone cell cycle regulator ISO
IBA
(PMID:14718166)
PMID:21873635
RGD PMID:14718166, PMID:21873635 RGD:13792537 NCBI chr11:86,168,196...86,276,430
Ensembl chr11:86,168,196...86,276,430
JBrowse link
G Hist1h4b histone cluster 1 H4 family member B ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:44,522,144...44,526,587
Ensembl chr17:44,522,140...44,526,583
JBrowse link
G Hist1h4m histone cluster 1, H4m ISO (PMID:14718166) RGD PMID:14718166 Ensembl chr17:44,815,684...44,815,995 JBrowse link
G Hist2h4 histone cluster 2, H4 ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 2:198,411,955...198,412,350
Ensembl chr 2:198,411,955...198,412,350
JBrowse link
G Hist2h4a histone cluster 2 H4 family member A ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 4:170,800,539...170,800,979
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr 2:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
JBrowse link
G Ipo4 importin 4 ISO (PMID:14718166) RGD PMID:14718166 NCBI chr15:34,304,425...34,314,552
Ensembl chr15:34,304,425...34,314,345
JBrowse link
G LOC100911837 protein HIRA-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:85,802,536...85,896,680
Ensembl chr11:85,802,605...85,895,613
JBrowse link
G LOC100912290 histone H4-like ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 4:170,092,457...170,117,607 JBrowse link
G LOC102548682 histone H4-like ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:43,616,218...43,673,659
Ensembl chr17:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr 2:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr 2:43,791,657...43,792,067
Ensembl chr 2:43,791,657...43,792,067
JBrowse link
G LOC102551184 histone H4-like ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:43,770,198...43,821,579 JBrowse link
G Nasp nuclear autoantigenic sperm protein ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 5:135,446,485...135,472,113
Ensembl chr 5:135,446,962...135,472,116
JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 5:147,499,880...147,535,240
Ensembl chr 5:147,499,882...147,535,240
JBrowse link
G RGD1562378 histone H4 variant H4-v.1 ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 4:170,762,862...170,763,962
Ensembl chr 4:170,763,605...170,763,916
JBrowse link
G Ubn1 ubinuclein 1 ISO (PMID:14718166) RGD PMID:14718166 NCBI chr10:10,690,224...10,725,655
Ensembl chr10:10,690,224...10,725,655
JBrowse link
heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07027368.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr17:26,772,096...26,772,732 JBrowse link
G Bahd1 bromo adjacent homology domain containing 1 ISO (PMID:19666599) RGD PMID:19666599 NCBI chr 3:110,708,790...110,732,038
Ensembl chr 3:110,723,481...110,732,060
JBrowse link
G Baz2a bromodomain adjacent to zinc finger domain, 2A ISO (MGI:MGI:3653583|PMID:16678107), (MGI:MGI:4462332|PMID:20168299) RGD PMID:16678107, PMID:20168299 MGI:MGI:3653583, MGI:MGI:4462332 NCBI chr 7:2,518,267...2,548,840
Ensembl chr 7:2,529,077...2,547,062
JBrowse link
G Ezh1 enhancer of zeste 1 polycomb repressive complex 2 subunit ISO (MGI:MGI:3820717|PMID:19026781) RGD PMID:19026781 MGI:MGI:3820717 NCBI chr10:89,104,026...89,139,978
Ensembl chr10:89,104,027...89,130,339
JBrowse link
G Hmga2 high mobility group AT-hook 2 ISO
ISS
(PMID:16901784)
GO_REF:0000024
RGD
UniProt
PMID:16901784 GO_REF:0000024 NCBI chr 7:65,159,944...65,275,408
Ensembl chr 7:65,159,944...65,275,408
JBrowse link
G LOC100362333 DNA-directed DNA polymerase epsilon 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:118,816,053...118,816,725
Ensembl chr 7:118,816,218...118,816,655
Ensembl chr 5:118,816,218...118,816,655
JBrowse link
G Pole3 DNA polymerase epsilon 3, accessory subunit IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:78,380,813...78,384,047
Ensembl chr 5:78,380,816...78,384,047
JBrowse link
G Sirt1 sirtuin 1 ISO (PMID:15469825) RGD PMID:15469825 NCBI chr20:26,831,971...26,851,587
Ensembl chr20:26,833,357...26,852,199
JBrowse link
heterochromatin assembly by small RNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fam172a family with sequence similarity 172, member A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:4,942,795...5,547,744
Ensembl chr 2:4,942,775...5,545,144
JBrowse link
G Nrde2 NRDE-2, necessary for RNA interference, domain containing IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:124,136,949...124,177,426
Ensembl chr 6:124,142,395...124,177,404
JBrowse link
G Znfx1 zinc finger, NFX1-type containing 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:163,787,101...163,847,671
Ensembl chr 3:163,787,101...163,847,671
JBrowse link
histone H3-S10 phosphorylation involved in chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnb1 cyclin B1 ISO (MGI:MGI:5494393|PMID:22053081) RGD PMID:22053081 MGI:MGI:5494393 NCBI chr 2:30,782,133...30,791,106
Ensembl chr 2:30,783,915...30,791,221
JBrowse link
inactivation of X chromosome by heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smchd1 structural maintenance of chromosomes flexible hinge domain containing 1 ISO (MGI:MGI:5532809|PMID:23754746) RGD PMID:23754746 MGI:MGI:5532809 NCBI chr 9:119,675,750...119,818,620
Ensembl chr 9:119,676,628...119,818,310
JBrowse link
meiotic chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Incenp inner centromere protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:225,923,448...225,953,384
Ensembl chr 1:225,925,773...225,952,516
JBrowse link
G Mastl microtubule associated serine/threonine kinase-like ISO (PMID:23843240) RGD PMID:23843240 NCBI chr17:89,839,562...89,875,855
Ensembl chr17:89,742,140...89,876,825
JBrowse link
G Ncapd2 non-SMC condensin I complex, subunit D2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:157,682,855...157,705,903
Ensembl chr 4:157,683,077...157,704,596
JBrowse link
G Ncapd3 non-SMC condensin II complex, subunit D3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:28,075,629...28,145,024
Ensembl chr 8:28,075,551...28,144,741
JBrowse link
G Ncaph non-SMC condensin I complex, subunit H ISO MGI:MGI:1289164 (MGI:MGI:5317363|PMID:21795393), (MGI:MGI:5784807|PMID:25961503) RGD PMID:21795393, PMID:25961503 MGI:MGI:5317363, MGI:MGI:5784807 NCBI chr 3:119,583,798...119,611,148
Ensembl chr 3:119,583,648...119,611,136
JBrowse link
G Ncaph2 non-SMC condensin II complex, subunit H2 IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(MGI:MGI:5784807|PMID:25961503)
Ensembl
RGD
PMID:25961503, PMID:21873635 GO_REF:0000107, MGI:MGI:5784807, RGD:13792537 NCBI chr 7:130,326,597...130,343,655
Ensembl chr 7:130,326,600...130,342,493
JBrowse link
G Smc2 structural maintenance of chromosomes 2 ISO (MGI:MGI:5317363|PMID:21795393) RGD PMID:21795393 MGI:MGI:5317363 NCBI chr 5:68,717,509...68,764,080
Ensembl chr 5:68,717,519...68,763,850
JBrowse link
G Smc4 structural maintenance of chromosomes 4 ISO (MGI:MGI:5317363|PMID:21795393) RGD PMID:21795393 MGI:MGI:5317363 NCBI chr 2:165,600,934...165,629,415
Ensembl chr 2:165,601,007...165,629,415
JBrowse link
mitotic chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akap8 A-kinase anchoring protein 8 ISO (MGI:MGI:3512088|PMID:12082153) RGD PMID:12082153 MGI:MGI:3512088 NCBI chr 7:14,323,298...14,339,953
Ensembl chr 7:14,324,104...14,351,918
JBrowse link
G Akap8l A-kinase anchoring protein 8 like ISO (PMID:11034899) RGD PMID:11034899 NCBI chr 7:14,340,168...14,369,835
Ensembl chr 7:14,340,170...14,369,821
JBrowse link
G Cdca5 cell division cycle associated 5 ISO (PMID:15837422) RGD PMID:15837422 NCBI chr 1:221,448,661...221,462,235
Ensembl chr 1:221,448,661...221,462,233
JBrowse link
G Chmp1a charged multivesicular body protein 1A ISO (PMID:11559747) RGD PMID:11559747 NCBI chr19:56,001,724...56,010,004
Ensembl chr19:56,001,724...56,010,004
JBrowse link
G Ncapd2 non-SMC condensin I complex, subunit D2 IBA
ISO
PMID:21873635
(PMID:11136719), (PMID:27737959)
RGD PMID:11136719, PMID:27737959, PMID:21873635 RGD:13792537 NCBI chr 4:157,682,855...157,705,903
Ensembl chr 4:157,683,077...157,704,596
JBrowse link
G Ncapd3 non-SMC condensin II complex, subunit D3 IBA
ISO
PMID:21873635
(PMID:14532007), (PMID:27737959)
RGD PMID:14532007, PMID:27737959, PMID:21873635 RGD:13792537 NCBI chr 8:28,075,629...28,145,024
Ensembl chr 8:28,075,551...28,144,741
JBrowse link
G Ncapg non-SMC condensin I complex, subunit G ISO
IBA
(PMID:11136719)
PMID:21873635
RGD PMID:11136719, PMID:21873635 RGD:13792537 NCBI chr14:69,898,268...69,927,885
Ensembl chr14:69,899,128...69,927,938
JBrowse link
G Ncaph non-SMC condensin I complex, subunit H IBA
ISO
PMID:21873635
(PMID:11136719), (PMID:11694586), (PMID:27737959)
RGD PMID:11136719, PMID:11694586, PMID:27737959, PMID:21873635 RGD:13792537 NCBI chr 3:119,583,798...119,611,148
Ensembl chr 3:119,583,648...119,611,136
JBrowse link
G Ncaph2 non-SMC condensin II complex, subunit H2 ISS
ISO
IEA
GO_REF:0000024
(MGI:MGI:5905517|PMID:27737959)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:27737959 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5905517 NCBI chr 7:130,326,597...130,343,655
Ensembl chr 7:130,326,600...130,342,493
JBrowse link
G Nipbl NIPBL, cohesin loading factor IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:57,508,830...57,676,197
Ensembl chr 2:57,509,428...57,600,820
JBrowse link
G Nusap1 nucleolar and spindle associated protein 1 ISO
IBA
(PMID:12963707)
PMID:21873635
RGD PMID:12963707, PMID:21873635 RGD:13792537 NCBI chr 3:111,422,267...111,452,600
Ensembl chr 3:111,422,267...111,452,971
JBrowse link
G Phf13 PHD finger protein 13 ISO
IBA
(PMID:19638409)
PMID:21873635
RGD PMID:19638409, PMID:21873635 RGD:13792537 NCBI chr 5:169,161,412...169,167,831
Ensembl chr 5:169,161,412...169,167,831
JBrowse link
G Smc2 structural maintenance of chromosomes 2 ISO (PMID:11136719) RGD PMID:11136719 NCBI chr 5:68,717,509...68,764,080
Ensembl chr 5:68,717,519...68,763,850
JBrowse link
G Smc4 structural maintenance of chromosomes 4 ISO
IBA
(PMID:11136719)
PMID:21873635
RGD PMID:11136719, PMID:21873635 RGD:13792537 NCBI chr 2:165,600,934...165,629,415
Ensembl chr 2:165,601,007...165,629,415
JBrowse link
G Ttn titin ISO (PMID:9548712) RGD PMID:9548712 NCBI chr 3:63,565,160...63,837,815 JBrowse link
negative regulation of chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H3f3a H3 histone family member 3A ISO MGI:MGI:1101768 (MGI:MGI:5502235|PMID:23903189) RGD PMID:23903189 MGI:MGI:5502235 NCBI chr13:99,091,246...99,102,828
Ensembl chr13:99,091,763...99,101,208
JBrowse link
G H3f3b H3 histone family member 3B ISO MGI:MGI:1097686 (MGI:MGI:5502235|PMID:23903189) RGD PMID:23903189 MGI:MGI:5502235 NCBI chr10:104,573,666...104,575,890
Ensembl chr10:104,573,664...104,575,890
JBrowse link
negative regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation-induced cytidine deaminase ISO (PMID:21496894) RGD PMID:21496894 NCBI chr 4:155,359,909...155,371,104
Ensembl chr 4:155,359,921...155,369,671
JBrowse link
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 ISO
ISS
(MGI:MGI:5285126|PMID:21496894)
GO_REF:0000024
RGD
UniProt
PMID:21496894 GO_REF:0000024, MGI:MGI:5285126 NCBI chr 4:155,386,367...155,414,034
Ensembl chr 4:155,386,711...155,401,480
JBrowse link
G Tet1 tet methylcytosine dioxygenase 1 ISO (PMID:21496894) RGD PMID:21496894 NCBI chr20:27,359,122...27,438,039
Ensembl chr20:27,366,213...27,437,427
JBrowse link
negative regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phf2 PHD finger protein 2 ISO (PMID:20129925) RGD PMID:20129925 NCBI chr17:16,240,458...16,274,626
Ensembl chr17:16,204,427...16,274,624
JBrowse link
G Phf8 PHD finger protein 8 ISO (PMID:20208542) RGD PMID:20208542 NCBI chr  X:21,063,487...21,168,750
Ensembl chr  X:21,063,562...21,168,750
JBrowse link
nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07012583.2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 2:198,418,691...198,424,443 JBrowse link
G AABR07031691.1 IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr18:27,205,850...27,206,777 JBrowse link
G AABR07031963.1 IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr18:40,853,988...40,873,685 JBrowse link
G AABR07040686.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr  X:107,584,653...107,585,312 JBrowse link
G AABR07058615.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 7:127,964,752...127,965,903 JBrowse link
G Anp32b acidic nuclear phosphoprotein 32 family member B IEA
ISO
GO_REF:0000107
(PMID:20538007)
Ensembl
RGD
PMID:20538007 GO_REF:0000107 NCBI chr 5:62,070,709...62,094,633
Ensembl chr 5:62,071,346...62,094,633
JBrowse link
G Asf1a anti-silencing function 1A histone chaperone ISO (PMID:11897662) RGD PMID:11897662 NCBI chr20:34,894,419...34,909,265
Ensembl chr20:34,894,419...34,909,265
JBrowse link
G Asf1b anti-silencing function 1B histone chaperone ISO (MGI:MGI:2675150|PMID:12842904) RGD PMID:12842904 MGI:MGI:2675150 NCBI chr19:25,077,918...25,092,491
Ensembl chr19:25,077,918...25,092,491
JBrowse link
G Atrx ATRX, chromatin remodeler ISO
ISS
(PMID:20651253)
GO_REF:0000024
RGD
UniProt
PMID:20651253 GO_REF:0000024 NCBI chr  X:76,820,110...76,979,155
Ensembl chr  X:76,692,970...76,708,878
Ensembl chr  X:76,692,970...76,708,878
JBrowse link
G Brd2 bromodomain containing 2 ISO
ISS
(PMID:18406326)
GO_REF:0000024
RGD
UniProt
PMID:18406326 GO_REF:0000024 NCBI chr20:3,910,555...3,921,074
Ensembl chr20:3,910,555...3,917,426
Ensembl chr20:3,910,555...3,917,426
JBrowse link
G Chaf1a chromatin assembly factor 1 subunit A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:11,000,869...11,027,631
Ensembl chr 9:11,001,129...11,027,506
JBrowse link
G Chaf1b chromatin assembly factor 1 subunit B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:34,101,248...34,121,371
Ensembl chr11:34,101,197...34,121,378
JBrowse link
G Daxx death-domain associated protein ISO
IBA
IEA
(MGI:MGI:5567907|PMID:20651253)
PMID:21873635
GO_REF:0000107
(PMID:20504901), (PMID:20651253)
RGD
Ensembl
PMID:20504901, PMID:20651253, PMID:21873635 GO_REF:0000107, MGI:MGI:5567907, RGD:13792537 NCBI chr20:5,480,103...5,485,962
Ensembl chr20:5,480,103...5,485,926
JBrowse link
G Grwd1 glutamate-rich WD repeat containing 1 IEA
ISO
ISS
GO_REF:0000107
(PMID:25990725), (PMID:27552915)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:25990725, PMID:27552915 GO_REF:0000024, GO_REF:0000107 NCBI chr 1:101,813,356...101,819,058
Ensembl chr 1:101,813,684...101,819,478
JBrowse link
G H1f0 H1 histone family, member 0 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:120,260,776...120,262,636 JBrowse link
G H1f1 H1.1 linker histone, cluster member IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:43,614,101...43,614,844
Ensembl chr17:43,614,101...43,614,844
JBrowse link
G H1f10 H1.10 linker histone IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:119,889,016...119,892,661
Ensembl chr 4:119,889,371...119,889,949
JBrowse link
G H1f2 H1.2 linker histone, cluster member IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:43,638,938...43,640,445
Ensembl chr17:43,639,749...43,640,387
JBrowse link
G H1f4 H1.4 linker histone, cluster member IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:43,734,461...43,735,120
Ensembl chr17:43,734,461...43,735,120
JBrowse link
G H1f5 H1.5 linker histone, cluster member IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:44,766,313...44,766,981
Ensembl chr17:44,766,313...44,766,981
JBrowse link
G H1f6 H1.6 linker histone, cluster member IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:43,675,190...43,675,934
Ensembl chr17:43,675,190...43,675,934
JBrowse link
G H1f8 H1.8 linker histone IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:147,844,658...147,849,779
Ensembl chr 4:147,844,658...147,849,779
JBrowse link
G H2afb3 H2A histone family, member B3 ISO (PMID:22795134) RGD PMID:22795134 NCBI chr  X:88,602,135...88,602,485
Ensembl chr  X:88,602,135...88,602,485
JBrowse link
G H2bc1 H2B clustered histone 1 ISO
IBA
ISS
(PMID:24699735)
(MGI:MGI:3702345|PMID:17261847), (MGI:MGI:5502464|PMID:23884607)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:17261847, PMID:23884607, PMID:24699735, PMID:21873635 GO_REF:0000024, MGI:MGI:3702345, MGI:MGI:5502464, RGD:13792537 NCBI chr17:43,423,111...43,423,580
Ensembl chr17:43,423,111...43,423,580
JBrowse link
G H2bc12 H2B clustered histone 12 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:44,527,421...44,527,801
Ensembl chr17:44,527,421...44,527,801
JBrowse link
G H2bc9 H2B clustered histone 9 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:44,519,815...44,520,269
Ensembl chr17:44,519,860...44,520,240
JBrowse link
G H2bu1 H2B.U histone 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:45,296,638...45,297,385
Ensembl chr10:45,296,638...45,297,385
JBrowse link
G H3c1 H3 clustered histone 1 ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr17:43,616,206...43,616,735
Ensembl chr17:44,839,721...44,840,131
Ensembl chr17:44,839,721...44,840,131
Ensembl chr17:44,839,721...44,840,131
Ensembl chr17:44,839,721...44,840,131
JBrowse link
G H3c13 H3 clustered histone 13 ISO (PMID:21636898), (PMID:25615412) RGD PMID:21636898, PMID:25615412 NCBI chr17:43,776,018...43,776,779
Ensembl chr17:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr 2:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr 2:43,791,657...43,792,067
Ensembl chr 2:43,791,657...43,792,067
JBrowse link
G H3f3a H3 histone family member 3A ISO (PMID:21636898), (PMID:25615412) RGD PMID:21636898, PMID:25615412 NCBI chr13:99,091,246...99,102,828
Ensembl chr13:99,091,763...99,101,208
JBrowse link
G H3f3b H3 histone family member 3B ISO (PMID:21636898), (PMID:25615412) RGD PMID:21636898, PMID:25615412 NCBI chr10:104,573,666...104,575,890
Ensembl chr10:104,573,664...104,575,890
JBrowse link
G H3f4 H3.4 histone ISO (PMID:20498094), (PMID:25615412) RGD PMID:20498094, PMID:25615412 NCBI chr10:45,304,696...45,305,106 JBrowse link
G H4f3 H1.3 linker histone, cluster member IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:43,797,711...43,798,450
Ensembl chr17:43,797,721...43,798,383
JBrowse link
G Hils1 histone linker H1 domain, spermatid-specific 1 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:82,775,691...82,776,487
Ensembl chr10:82,775,691...82,776,487
JBrowse link
G Hist1h2ail1 histone cluster 1 H2a family member I like 1 ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr17:43,814,773...43,815,183
Ensembl chr17:43,814,773...43,815,183
Ensembl chr17:43,814,773...43,815,183
JBrowse link
G Hist1h2ao histone cluster 1, H2ao IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:44,744,534...44,744,931
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr 2:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
JBrowse link
G Hist1h2bc histone cluster 1, H2bc IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:44,736,184...44,738,393
Ensembl chr17:44,737,950...44,738,330
Ensembl chr17:44,737,950...44,738,330
JBrowse link
G Hist1h2bd histone cluster 1 H2B family member D IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:44,833,924...44,834,305
Ensembl chr17:44,833,924...44,834,305
JBrowse link
G Hist1h2bg histone cluster 1, H2bg IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:43,817,316...43,817,717
Ensembl chr17:43,817,378...43,817,720
JBrowse link
G Hist1h2bl histone cluster 1 H2B family member l IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:44,748,445...44,748,910
Ensembl chr17:44,748,482...44,748,862
JBrowse link
G Hist1h2bo histone cluster 1 H2B family member o IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:44,756,557...44,758,170
Ensembl chr17:44,756,555...44,793,927
JBrowse link
G Hist1h2bq histone cluster 1 H2B family member Q IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:43,679,925...43,689,311
Ensembl chr17:43,679,925...43,689,311
JBrowse link
G Hist1h3b histone cluster 1, H3b ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr17:44,760,023...44,764,058
Ensembl chr17:44,839,721...44,840,131
Ensembl chr17:44,839,721...44,840,131
Ensembl chr17:44,839,721...44,840,131
Ensembl chr17:44,839,721...44,840,131
JBrowse link
G Hist1h4b histone cluster 1 H4 family member B ISO
IBA
(PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412)
PMID:21873635
RGD PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412, PMID:21873635 RGD:13792537 NCBI chr17:44,522,144...44,526,587
Ensembl chr17:44,522,140...44,526,583
JBrowse link
G Hist1h4m histone cluster 1, H4m IBA
ISO
PMID:21873635
(PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412)
RGD PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412, PMID:21873635 RGD:13792537 Ensembl chr17:44,815,684...44,815,995 JBrowse link
G Hist2h2be histone cluster 2 H2B family member E IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:198,360,837...198,363,399
Ensembl chr 2:198,360,998...198,361,378
JBrowse link
G Hist2h3c2 histone cluster 2 H3 family member C2 ISO (PMID:21636898), (PMID:25615412) RGD PMID:21636898, PMID:25615412 NCBI chr 2:198,390,024...198,418,075
Ensembl chr 2:198,417,619...198,418,029
JBrowse link
G Hist2h4 histone cluster 2, H4 ISO
IBA
(PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412)
PMID:21873635
RGD PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412, PMID:21873635 RGD:13792537 NCBI chr 2:198,411,955...198,412,350
Ensembl chr 2:198,411,955...198,412,350
JBrowse link
G Hist2h4a histone cluster 2 H4 family member A IBA
ISO
PMID:21873635
(PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412)
RGD PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412, PMID:21873635 RGD:13792537 NCBI chr 4:170,800,539...170,800,979
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr 2:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
JBrowse link
G Hist3h2ba histone cluster 3, H2ba IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:45,289,741...45,290,370
Ensembl chr10:45,289,741...45,290,370
JBrowse link
G Hmgb1 high mobility group box 1 ISO (PMID:2465778) RGD PMID:2465778 NCBI chr12:7,082,529...7,090,246
Ensembl chr16:37,500,017...37,502,237
JBrowse link
G Hmgb2 high mobility group box 2 ISO (PMID:2465778) RGD PMID:2465778 NCBI chr16:36,077,615...36,080,191
Ensembl chr16:36,077,617...36,080,191
Ensembl chr11:36,077,617...36,080,191
JBrowse link
G Hp1bp3 heterochromatin protein 1, binding protein 3 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:156,581,732...156,609,059
Ensembl chr 5:156,581,732...156,609,059
JBrowse link
G Kat6a lysine acetyltransferase 6A IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:73,942,669...74,020,750
Ensembl chr16:73,943,455...74,023,005
JBrowse link
G Kat6b lysine acetyltransferase 6B IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr15:2,811,933...2,966,833
Ensembl chr15:2,813,537...2,966,576
JBrowse link
G LOC100364835 histone cluster 1, H2bd-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:43,764,654...43,765,101
Ensembl chr17:44,737,950...44,738,330
Ensembl chr17:44,737,950...44,738,330
JBrowse link
G LOC100365043 histone cluster 1, H2bd-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:43,808,617...43,817,817
Ensembl chr17:44,737,950...44,738,330
Ensembl chr17:44,737,950...44,738,330
Ensembl chr17:44,737,950...44,738,330
JBrowse link
G LOC100910200 histone H2B type 1-C/E/G-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:44,792,982...44,793,896
Ensembl chr17:44,737,950...44,738,330
Ensembl chr17:44,737,950...44,738,330
JBrowse link
G LOC100912290 histone H4-like ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr 4:170,092,457...170,117,607 JBrowse link
G LOC100912489 histone H4-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:170,144,871...170,145,311
Ensembl chr 4:170,144,951...170,145,262
JBrowse link
G LOC100912564 histone H4-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:170,182,634...170,183,074
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr 2:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
JBrowse link
G LOC102548682 histone H4-like ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr17:43,616,218...43,673,659
Ensembl chr17:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr 2:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr 2:43,791,657...43,792,067
Ensembl chr 2:43,791,657...43,792,067
JBrowse link
G LOC102549061 histone H2B type 1-N-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:43,627,872...43,628,518
Ensembl chr17:43,627,930...43,628,310
JBrowse link
G LOC102551184 histone H4-like ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr17:43,770,198...43,821,579 JBrowse link
G LOC108348112 bromodomain-containing protein 2 ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr20:5,262,742...5,269,337
Ensembl chr20:5,262,120...5,269,337
JBrowse link
G LOC499544 LRRGT00154 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:61,991,742...62,018,698
Ensembl chr 2:61,991,742...62,018,698
JBrowse link
G LOC499843 LRRGT00091 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:90,720,921...90,751,055
Ensembl chr 3:90,720,921...90,751,055
JBrowse link
G LOC500948 LRRGT00073 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:16,279,392...16,280,134
Ensembl chr 8:16,279,392...16,347,545
JBrowse link
G LOC684444 similar to HIStone family member (his-41) IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:29,247,748...29,248,259
Ensembl chr 2:29,247,803...29,248,174
JBrowse link
G LOC684797 similar to Histone H2B 291B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:43,778,481...43,778,990
Ensembl chr17:44,737,950...44,738,330
Ensembl chr17:44,737,950...44,738,330
JBrowse link
G LOC684819 similar to H3 histone, family 2 isoform 2 ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr17:43,794,397...43,795,493 JBrowse link
G LOC690126 hypothetical protein LOC690126 ISO (PMID:21636898), (PMID:25615412) RGD PMID:21636898, PMID:25615412 NCBI chr 2:198,379,864...198,381,026
Ensembl chr 2:198,380,426...198,380,836
JBrowse link
G Macroh2a1 macroH2A.1 histone IEA GO_REF:0000002
GO_REF:0000104
InterPro
UniProt
GO_REF:0000002, GO_REF:0000104 NCBI chr17:9,282,109...9,344,698
Ensembl chr17:9,282,675...9,344,678
JBrowse link
G Macroh2a2 macroH2A.2 histone IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr20:31,352,924...31,402,483
Ensembl chr20:31,352,960...31,402,483
JBrowse link
G Mcm2 minichromosome maintenance complex component 2 ISO (MGI:MGI:2156014|PMID:10531422) RGD PMID:10531422 MGI:MGI:2156014 NCBI chr 4:120,825,699...120,840,221
Ensembl chr 4:120,825,699...120,840,111
JBrowse link
G Naa60 N(alpha)-acetyltransferase 60, NatF catalytic subunit ISO
ISS
(PMID:21981917)
GO_REF:0000024
RGD
UniProt
PMID:21981917 GO_REF:0000024 NCBI chr10:11,881,635...11,902,139
Ensembl chr10:11,881,739...11,901,785
JBrowse link
G Nap1l1 nucleosome assembly protein 1-like 1 IEA
IBA
GO_REF:0000002
PMID:21873635
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr 7:54,213,305...54,237,880
Ensembl chr 7:54,213,319...54,236,625
JBrowse link
G Nap1l3 nucleosome assembly protein 1-like 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:95,059,334...95,062,132
Ensembl chr  X:95,059,337...95,062,132
JBrowse link
G Nap1l4 nucleosome assembly protein 1-like 4 IEA
IBA
ISS
ISO
GO_REF:0000107
PMID:21873635
GO_REF:0000024
(MGI:MGI:5897488|PMID:28366643)
(PMID:9325046)
Ensembl
UniProt
RGD
PMID:9325046, PMID:28366643, PMID:21873635 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5897488, RGD:13792537 NCBI chr 1:216,715,352...216,751,742
Ensembl chr 1:216,715,363...216,750,844
JBrowse link
G Nap1l5 nucleosome assembly protein 1-like 5 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:89,149,314...89,152,511
Ensembl chr 4:89,149,317...89,151,184
JBrowse link
G Nasp nuclear autoantigenic sperm protein ISO (PMID:25615412) RGD PMID:25615412 NCBI chr 5:135,446,485...135,472,113
Ensembl chr 5:135,446,962...135,472,116
JBrowse link
G Npm1 nucleophosmin 1 ISO (PMID:11602260) RGD PMID:11602260 NCBI chr10:18,080,949...18,091,062
Ensembl chr10:18,080,950...18,090,950
JBrowse link
G Padi4 peptidyl arginine deiminase 4 ISO
ISS
(MGI:MGI:5545819|PMID:24463520)
GO_REF:0000024
RGD
UniProt
PMID:24463520 GO_REF:0000024, MGI:MGI:5545819 NCBI chr 5:159,260,675...159,293,906
Ensembl chr 5:159,260,675...159,293,673
JBrowse link
G Pkn3 protein kinase N3 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:8,628,033...8,656,464
Ensembl chr 3:8,628,033...8,659,117
JBrowse link
G RGD1560617 hypothetical gene supported by NM_053561; AF062594 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:127,964,727...127,965,921 JBrowse link
G RGD1562378 histone H4 variant H4-v.1 ISO
IBA
(PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412)
PMID:21873635
RGD PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412, PMID:21873635 RGD:13792537 NCBI chr 4:170,762,862...170,763,962
Ensembl chr 4:170,763,605...170,763,916
JBrowse link
G RGD1563307 similar to Set beta isoform IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:89,645,570...89,646,774
Ensembl chr 1:89,645,769...89,646,590
JBrowse link
G Rsf1 remodeling and spacing factor 1 ISO (PMID:12972596) RGD PMID:12972596 NCBI chr 1:162,549,222...162,671,962
Ensembl chr 1:162,549,420...162,662,170
JBrowse link
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein ISO (PMID:24526689) RGD PMID:24526689 NCBI chr12:48,628,198...48,656,096
Ensembl chr12:48,628,278...48,656,096
JBrowse link
G Set SET nuclear proto-oncogene IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr19:58,420,635...58,422,153
Ensembl chr19:58,419,961...58,421,504
JBrowse link
G Shprh SNF2 histone linker PHD RING helicase IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:5,240,139...5,313,064
Ensembl chr 1:5,240,180...5,313,054
JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 ISO (PMID:12972596) RGD PMID:12972596 NCBI chr19:30,936,703...30,969,454
Ensembl chr19:30,936,703...30,969,454
JBrowse link
G Smyd3 SET and MYND domain containing 3 ISO (MGI:MGI:5500979|PMID:23752591) RGD PMID:23752591 MGI:MGI:5500979 NCBI chr13:97,330,120...97,807,813 JBrowse link
G Sox9 SRY-box transcription factor 9 ISO
ISS
(PMID:20484372)
GO_REF:0000024
RGD
UniProt
PMID:20484372 GO_REF:0000024 NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379
JBrowse link
G Spty2d1 SPT2 chromatin protein domain containing 1 ISO
IBA
(PMID:23378026)
PMID:21873635
RGD PMID:23378026, PMID:21873635 RGD:13792537 NCBI chr 1:103,115,280...103,129,438
Ensembl chr 1:103,115,216...103,128,743
JBrowse link
G Tspy1 testis specific protein, Y-linked 1 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  Y:151,941...156,587
Ensembl chr  Y:151,937...155,263
JBrowse link
G Tspy26 testis specific protein, Y-linked 26 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:148,704,896...148,706,972
Ensembl chr 3:148,704,900...148,706,972
JBrowse link
G Tspyl1 TSPY-like 1 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr20:41,083,317...41,085,876
Ensembl chr20:41,083,317...41,085,875
JBrowse link
G Tspyl2 TSPY-like 2 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:22,408,118...22,413,886
Ensembl chr  X:22,408,118...22,413,741
JBrowse link
G Tspyl4 TSPY-like 4 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr20:41,100,071...41,102,067
Ensembl chr20:41,100,071...41,102,056
JBrowse link
G Tspyl5 TSPY-like 5 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:72,323,764...72,328,228
Ensembl chr 7:72,326,896...72,328,128
JBrowse link
nucleosome positioning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07028349.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr17:66,238,947...66,241,440 JBrowse link
G Ctcf CCCTC-binding factor ISO
IEA
(PMID:18654629)
GO_REF:0000107
RGD
Ensembl
PMID:18654629 GO_REF:0000107 NCBI chr19:37,600,151...37,649,674
Ensembl chr19:37,600,148...37,649,673
JBrowse link
G H1f0 H1 histone family, member 0 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:120,260,776...120,262,636 JBrowse link
G H1f1 H1.1 linker histone, cluster member IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:43,614,101...43,614,844
Ensembl chr17:43,614,101...43,614,844
JBrowse link
G H1f10 H1.10 linker histone IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:119,889,016...119,892,661
Ensembl chr 4:119,889,371...119,889,949
JBrowse link
G H1f2 H1.2 linker histone, cluster member ISO
IBA
MGI:MGI:2665852 (MGI:MGI:2664444|PMID:12808097)
PMID:21873635
RGD PMID:12808097, PMID:21873635 MGI:MGI:2664444, RGD:13792537 NCBI chr17:43,638,938...43,640,445
Ensembl chr17:43,639,749...43,640,387
JBrowse link
G H1f4 H1.4 linker histone, cluster member ISO
IBA
MGI:MGI:2665857 (MGI:MGI:2664444|PMID:12808097)
PMID:21873635
RGD PMID:12808097, PMID:21873635 MGI:MGI:2664444, RGD:13792537 NCBI chr17:43,734,461...43,735,120
Ensembl chr17:43,734,461...43,735,120
JBrowse link
G H1f5 H1.5 linker histone, cluster member IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:44,766,313...44,766,981
Ensembl chr17:44,766,313...44,766,981
JBrowse link
G H1f6 H1.6 linker histone, cluster member IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:43,675,190...43,675,934
Ensembl chr17:43,675,190...43,675,934
JBrowse link
G H1f8 H1.8 linker histone ISO
IBA
ISS
(MGI:MGI:5559660|PMID:22868987)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:22868987, PMID:21873635 GO_REF:0000024, MGI:MGI:5559660, RGD:13792537 NCBI chr 4:147,844,658...147,849,779
Ensembl chr 4:147,844,658...147,849,779
JBrowse link
G H4f3 H1.3 linker histone, cluster member ISO
IBA
MGI:MGI:2666743 (MGI:MGI:2664444|PMID:12808097)
PMID:21873635
RGD PMID:12808097, PMID:21873635 MGI:MGI:2664444, RGD:13792537 NCBI chr17:43,797,711...43,798,450
Ensembl chr17:43,797,721...43,798,383
JBrowse link
G Hils1 histone linker H1 domain, spermatid-specific 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:82,775,691...82,776,487
Ensembl chr10:82,775,691...82,776,487
JBrowse link
G Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component ISO (PMID:22046413) RGD PMID:22046413 NCBI chr 1:85,362,421...85,367,999
Ensembl chr 1:85,362,268...85,368,031
JBrowse link
G Prdm9 PR/SET domain 9 ISO
ISS
(PMID:29072575)
GO_REF:0000024
RGD
UniProt
PMID:29072575 GO_REF:0000024 NCBI chr 1:57,533,602...57,555,155
Ensembl chr 1:57,533,577...57,555,048
JBrowse link
G Rsf1 remodeling and spacing factor 1 ISO (PMID:9836642) RGD PMID:9836642 NCBI chr 1:162,549,222...162,671,962
Ensembl chr 1:162,549,420...162,662,170
JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 ISO
IBA
(PMID:9836642)
PMID:21873635
RGD PMID:9836642, PMID:21873635 RGD:13792537 NCBI chr19:30,936,703...30,969,454
Ensembl chr19:30,936,703...30,969,454
JBrowse link
pericentric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cenpv centromere protein V ISO
IBA
(PMID:18772885)
PMID:21873635
RGD PMID:18772885, PMID:21873635 RGD:13792537 NCBI chr10:48,846,513...48,861,893
Ensembl chr10:48,846,728...48,860,902
JBrowse link
G Dicer1 dicer 1 ribonuclease III ISO MGI:MGI:3589287 (MGI:MGI:3528782|PMID:15713842) RGD PMID:15713842 MGI:MGI:3528782 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G H3f3a H3 histone family member 3A ISO MGI:MGI:1101768 (MGI:MGI:5694896|PMID:26159997) RGD PMID:26159997 MGI:MGI:5694896 NCBI chr13:99,091,246...99,102,828
Ensembl chr13:99,091,763...99,101,208
JBrowse link
G H3f3b H3 histone family member 3B ISO MGI:MGI:1097686 (MGI:MGI:5694896|PMID:26159997) RGD PMID:26159997 MGI:MGI:5694896 NCBI chr10:104,573,666...104,575,890
Ensembl chr10:104,573,664...104,575,890
JBrowse link
G Hells helicase, lymphoid specific ISO
IBA
(MGI:MGI:3041983|PMID:14612388)
PMID:21873635
RGD PMID:14612388, PMID:21873635 MGI:MGI:3041983, RGD:13792537 NCBI chr 1:257,901,856...257,953,889
Ensembl chr 1:257,766,691...257,949,183
Ensembl chr 1:257,766,691...257,949,183
JBrowse link
G LOC100911660 lymphocyte-specific helicase-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:257,614,688...257,660,184
Ensembl chr 1:257,766,691...257,949,183
Ensembl chr 1:257,766,691...257,949,183
JBrowse link
positive regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf7ip activating transcription factor 7 interacting protein ISO (PMID:27732843) RGD PMID:27732843 NCBI chr 4:170,476,998...170,563,063
Ensembl chr 4:170,518,673...170,559,532
JBrowse link
G Dnmt1 DNA methyltransferase 1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:24623306)
Ensembl
UniProt
RGD
PMID:24623306 GO_REF:0000024, GO_REF:0000107 NCBI chr 8:21,922,515...21,968,495
Ensembl chr 8:21,922,515...21,968,495
JBrowse link
G Morc2 MORC family CW-type zinc finger 2 ISO (PMID:28581500), (PMID:29211708)
(MGI:MGI:6271895|PMID:29728365)
RGD PMID:28581500, PMID:29211708, PMID:29728365 MGI:MGI:6271895 NCBI chr14:83,889,138...83,930,263
Ensembl chr14:83,889,089...83,930,522
JBrowse link
G Mphosph8 M-phase phosphoprotein 8 ISS
ISO
GO_REF:0000024
(PMID:28581500), (PMID:29211708)
UniProt
RGD
PMID:28581500, PMID:29211708 GO_REF:0000024 NCBI chr15:36,918,843...36,946,712
Ensembl chr15:36,918,843...36,946,708
JBrowse link
G Pphln1 periphilin 1 ISO (PMID:28581500) RGD PMID:28581500 NCBI chr 7:134,602,109...134,693,807
Ensembl chr 7:134,603,121...134,695,864
JBrowse link
G Resf1 retroelement silencing factor 1 ISO (MGI:MGI:6271895|PMID:29728365) RGD PMID:29728365 MGI:MGI:6271895 NCBI chr 4:183,879,177...183,905,807
Ensembl chr 4:183,896,303...183,905,297
JBrowse link
G Setdb1 SET domain bifurcated histone lysine methyltransferase 1 ISO
IBA
(PMID:24623306), (PMID:27732843)
PMID:21873635
(MGI:MGI:5440670|PMID:20164836), (MGI:MGI:6271895|PMID:29728365)
RGD PMID:20164836, PMID:24623306, PMID:27732843, PMID:29728365, PMID:21873635 MGI:MGI:5440670, MGI:MGI:6271895, RGD:13792537 NCBI chr 2:196,495,867...196,527,412
Ensembl chr 2:196,495,867...196,527,127
JBrowse link
G Setdb2 SET domain bifurcated histone lysine methyltransferase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:38,699,135...39,745,035
Ensembl chr15:39,712,861...39,742,103
Ensembl chr15:39,712,861...39,742,103
JBrowse link
G Tasor transcription activation suppressor ISO (PMID:28581500), (PMID:29211708) RGD PMID:28581500, PMID:29211708 NCBI chr16:3,050,506...3,108,168
Ensembl chr16:3,051,449...3,105,531
JBrowse link
G Trim28 tripartite motif-containing 28 ISO
ISS
(PMID:24623306)
(MGI:MGI:5440670|PMID:20164836)
GO_REF:0000024
RGD
UniProt
PMID:20164836, PMID:24623306 GO_REF:0000024, MGI:MGI:5440670 NCBI chr 1:65,544,369...65,551,043
Ensembl chr 1:65,544,373...65,551,043
JBrowse link
positive regulation of heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tpr translocated promoter region, nuclear basket protein ISO
ISS
(PMID:20407419)
GO_REF:0000024
RGD
UniProt
PMID:20407419 GO_REF:0000024 NCBI chr13:67,611,685...67,672,833
Ensembl chr13:67,611,708...67,672,827
JBrowse link
positive regulation of subtelomeric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sirt6 sirtuin 6 ISO (PMID:21847107) RGD PMID:21847107 NCBI chr 7:10,937,622...10,943,048
Ensembl chr 7:10,937,599...10,943,063
JBrowse link
rDNA condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nipbl NIPBL, cohesin loading factor IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:57,508,830...57,676,197
Ensembl chr 2:57,509,428...57,600,820
JBrowse link
rDNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baz2a bromodomain adjacent to zinc finger domain, 2A ISO (MGI:MGI:3587127|PMID:16085498), (MGI:MGI:3653583|PMID:16678107), (MGI:MGI:3852313|PMID:12198165), (MGI:MGI:3852588|PMID:19578370), (MGI:MGI:4462332|PMID:20168299) RGD PMID:12198165, PMID:16085498, PMID:16678107, PMID:19578370, PMID:20168299 MGI:MGI:3587127, MGI:MGI:3653583, MGI:MGI:3852313, MGI:MGI:3852588, MGI:MGI:4462332 NCBI chr 7:2,518,267...2,548,840
Ensembl chr 7:2,529,077...2,547,062
JBrowse link
G Bend3 BEN domain containing 3 ISO
IBA
(PMID:26100909)
PMID:21873635
RGD PMID:26100909, PMID:21873635 RGD:13792537 NCBI chr20:48,248,193...48,270,905
Ensembl chr20:48,248,455...48,268,147
JBrowse link
G Rrp8 ribosomal RNA processing 8 ISO
IBA
ISS
(PMID:18485871)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:18485871, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 1:170,574,670...170,578,693
Ensembl chr 1:170,574,349...170,579,616
JBrowse link
G Sirt1 sirtuin 1 ISO
IEA
(PMID:18485871)
GO_REF:0000107
RGD
Ensembl
PMID:18485871 GO_REF:0000107 NCBI chr20:26,831,971...26,851,587
Ensembl chr20:26,833,357...26,852,199
JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 ISO (MGI:MGI:3587127|PMID:16085498) RGD PMID:16085498 MGI:MGI:3587127 NCBI chr19:30,936,703...30,969,454
Ensembl chr19:30,936,703...30,969,454
JBrowse link
G Suv39h1 suppressor of variegation 3-9 homolog 1 ISO (PMID:18485871) RGD PMID:18485871 NCBI chr  X:146,532,002...146,533,538 JBrowse link
G Suv39h1l1 suppressor of variegation 3-9 homolog 1 (Drosophila)-like 1 IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr  X:15,171,280...15,185,191
Ensembl chr  X:15,171,499...15,185,191
JBrowse link
G Ubtf upstream binding transcription factor ISO (MGI:MGI:3836497|PMID:19103806) RGD PMID:19103806 MGI:MGI:3836497 NCBI chr10:90,250,275...90,265,772
Ensembl chr10:90,250,275...90,265,017
JBrowse link
regulation of chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Parp10 poly (ADP-ribose) polymerase family, member 10 ISO (PMID:15674325) RGD PMID:15674325 NCBI chr 7:117,291,592...117,300,878
Ensembl chr 7:117,291,877...117,300,662
JBrowse link
G Spty2d1 SPT2 chromatin protein domain containing 1 ISO
IBA
(PMID:26109053)
PMID:21873635
RGD PMID:26109053, PMID:21873635 RGD:13792537 NCBI chr 1:103,115,280...103,129,438
Ensembl chr 1:103,115,216...103,128,743
JBrowse link
regulation of chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnb1 cyclin B1 IMP positive regulation RGD PMID:15291744 RGD:1578405 NCBI chr 2:30,782,133...30,791,106
Ensembl chr 2:30,783,915...30,791,221
JBrowse link
G Mcph1 microcephalin 1 ISO MGI:MGI:4332146 (MGI:MGI:4437500|PMID:20169082) RGD PMID:20169082 MGI:MGI:4437500 NCBI chr16:75,904,087...76,110,624
Ensembl chr16:75,904,006...76,110,553
JBrowse link
G Wapl WAPL cohesin release factor ISO
IBA
MGI:MGI:5551791|MGI:MGI:5551807 (MGI:MGI:5544860|PMID:23975099)
PMID:21873635
RGD PMID:23975099, PMID:21873635 MGI:MGI:5544860, RGD:13792537 NCBI chr16:11,029,325...11,108,867
Ensembl chr16:11,032,531...11,106,589
JBrowse link
regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pou5f1 POU class 5 homeobox 1 ISO (PMID:19736317) RGD PMID:19736317 NCBI chr20:3,747,231...3,751,994
Ensembl chr20:3,747,221...3,751,994
JBrowse link
regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Macroh2a1 macroH2A.1 histone NOT ISO (PMID:24071584) RGD PMID:24071584 NCBI chr17:9,282,109...9,344,698
Ensembl chr17:9,282,675...9,344,678
JBrowse link
G Naa40 N(alpha)-acetyltransferase 40, NatD catalytic subunit IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:222,478,021...222,495,382
Ensembl chr 1:222,478,021...222,495,382
JBrowse link
senescence-associated heterochromatin focus assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdkn2a cyclin-dependent kinase inhibitor 2A ISO (PMID:16901784) RGD PMID:16901784 NCBI chr 5:107,823,323...107,832,405
Ensembl chr 5:107,823,330...107,841,175
JBrowse link
G Hmga1 high mobility group AT-hook 1 ISO
ISS
(PMID:16901784)
GO_REF:0000024
RGD
UniProt
PMID:16901784 GO_REF:0000024 NCBI chr20:7,132,501...7,140,155
Ensembl chr20:7,136,007...7,138,980
JBrowse link
G Hmga2 high mobility group AT-hook 2 ISO
ISS
(PMID:16901784)
GO_REF:0000024
RGD
UniProt
PMID:16901784 GO_REF:0000024 NCBI chr 7:65,159,944...65,275,408
Ensembl chr 7:65,159,944...65,275,408
JBrowse link
sperm chromatin condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fshr follicle stimulating hormone receptor ISO MGI:MGI:2384087 (MGI:MGI:1855818|PMID:10775161) RGD PMID:10775161 MGI:MGI:1855818 NCBI chr 6:12,796,383...12,997,817
Ensembl chr 6:12,796,383...12,997,817
JBrowse link
G H1f7 H1.7 linker histone ISO
ISS
(MGI:MGI:3531623|PMID:15710904)
GO_REF:0000024
RGD
UniProt
PMID:15710904 GO_REF:0000024, MGI:MGI:3531623 NCBI chr 7:139,871,491...139,872,858
Ensembl chr 7:139,871,479...139,872,900
JBrowse link
G Selenof selenoprotein F IMP RGD PMID:11344099 RGD:728803 NCBI chr 2:250,600,823...250,633,903
Ensembl chr 2:250,600,823...250,633,897
JBrowse link
G Sycp1 synaptonemal complex protein 1 ISO
IEA
MGI:MGI:109542 (MGI:MGI:5315075|PMID:22164254)
GO_REF:0000107
RGD
Ensembl
PMID:22164254 GO_REF:0000107, MGI:MGI:5315075 NCBI chr 2:205,274,766...205,426,869
Ensembl chr 2:205,274,769...205,426,869
JBrowse link
G Sycp3 synaptonemal complex protein 3 ISO MGI:MGI:105931 (MGI:MGI:5315075|PMID:22164254) RGD PMID:22164254 MGI:MGI:5315075 NCBI chr 7:29,029,887...29,044,344
Ensembl chr 7:29,029,263...29,044,251
JBrowse link
G Tssk6 testis-specific serine kinase 6 ISO (MGI:MGI:3580211|PMID:15870294) RGD PMID:15870294 MGI:MGI:3580211 NCBI chr16:21,272,282...21,274,756
Ensembl chr16:21,273,387...21,274,688
JBrowse link
spermatogenesis, exchange of chromosomal proteins term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chd5 chromodomain helicase DNA binding protein 5 ISO
ISS
(MGI:MGI:5559810|PMID:24252660)
GO_REF:0000024
RGD
UniProt
PMID:24252660 GO_REF:0000024, MGI:MGI:5559810 NCBI chr 5:169,519,212...169,572,059
Ensembl chr 5:169,519,212...169,567,107
JBrowse link
G Fshr follicle stimulating hormone receptor ISO MGI:MGI:2384087 (MGI:MGI:2682484|PMID:14680821) RGD PMID:14680821 MGI:MGI:2682484 NCBI chr 6:12,796,383...12,997,817
Ensembl chr 6:12,796,383...12,997,817
JBrowse link
G H2bc1 H2B clustered histone 1 ISO
ISS
(MGI:MGI:5502464|PMID:23884607)
GO_REF:0000024
RGD
UniProt
PMID:23884607 GO_REF:0000024, MGI:MGI:5502464 NCBI chr17:43,423,111...43,423,580
Ensembl chr17:43,423,111...43,423,580
JBrowse link
G Piwil1 piwi-like RNA-mediated gene silencing 1 ISO (MGI:MGI:5905675|PMID:28552346) RGD PMID:28552346 MGI:MGI:5905675 NCBI chr12:31,608,641...31,629,961
Ensembl chr12:31,609,053...31,629,881
JBrowse link
G Psme4 proteasome activator subunit 4 ISO
IBA
(MGI:MGI:5494329|PMID:23706739)
PMID:21873635
RGD PMID:23706739, PMID:21873635 MGI:MGI:5494329, RGD:13792537 NCBI chr14:115,166,165...115,269,041
Ensembl chr14:115,166,416...115,269,056
JBrowse link
G Rnf8 ring finger protein 8 ISO
ISS
(MGI:MGI:5905675|PMID:28552346)
GO_REF:0000024
RGD
UniProt
PMID:28552346 GO_REF:0000024, MGI:MGI:5905675 NCBI chr20:8,285,380...8,309,858
Ensembl chr20:8,285,296...8,309,908
JBrowse link
G Sycp3 synaptonemal complex protein 3 ISO (PMID:14643120) RGD PMID:14643120 NCBI chr 7:29,029,887...29,044,344
Ensembl chr 7:29,029,263...29,044,251
JBrowse link
G Tnp1 transition protein 1 ISS
ISO
GO_REF:0000024
(MGI:MGI:3041389|PMID:15083521), (MGI:MGI:3056208|PMID:15189834), (MGI:MGI:3620321|PMID:15163613), (MGI:MGI:5897488|PMID:28366643)
UniProt
RGD
PMID:15083521, PMID:15163613, PMID:15189834, PMID:28366643 GO_REF:0000024, MGI:MGI:3041389, MGI:MGI:3056208, MGI:MGI:3620321, MGI:MGI:5897488 NCBI chr 9:80,294,837...80,295,446
Ensembl chr 9:80,294,840...80,295,446
JBrowse link
G Tnp2 transition protein 2 IEA
ISO
ISS
GO_REF:0000107
(MGI:MGI:3041389|PMID:15083521), (MGI:MGI:3056208|PMID:15189834), (MGI:MGI:3620321|PMID:15163613), (MGI:MGI:5897488|PMID:28366643)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:15083521, PMID:15163613, PMID:15189834, PMID:28366643 GO_REF:0000024, GO_REF:0000107, MGI:MGI:3041389, MGI:MGI:3056208, MGI:MGI:3620321, MGI:MGI:5897488 NCBI chr10:4,953,898...4,954,626
Ensembl chr10:4,953,879...4,954,624
JBrowse link
subtelomeric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H3f3a H3 histone family member 3A ISO MGI:MGI:1101768 (MGI:MGI:5694896|PMID:26159997) RGD PMID:26159997 MGI:MGI:5694896 NCBI chr13:99,091,246...99,102,828
Ensembl chr13:99,091,763...99,101,208
JBrowse link
G H3f3b H3 histone family member 3B ISO MGI:MGI:1097686 (MGI:MGI:5694896|PMID:26159997) RGD PMID:26159997 MGI:MGI:5694896 NCBI chr10:104,573,666...104,575,890
Ensembl chr10:104,573,664...104,575,890
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20015
    cellular process 18788
      cellular component organization or biogenesis 6766
        cellular component organization 6510
          organelle organization 4074
            chromosome organization 1250
              DNA conformation change 312
                DNA packaging 215
                  chromatin assembly + 169
                  chromosome condensation + 46
                  nonrepetitive DNA condensation 0
                  nucleoid DNA packaging + 0
                  rDNA condensation 1
                  sperm chromatin condensation + 13
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.