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ONTOLOGY REPORT - ANNOTATIONS


Term:DNA packaging
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Accession:GO:0006323 term browser browse the term
Definition:Any process in which DNA and associated proteins are formed into a compact, orderly structure.
Synonyms:exact_synonym: DNA condensation;   DNA organisation;   DNA organization


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apoptotic chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acin1 apoptotic chromatin condensation inducer 1 ISO (PMID:10490026) UniProtKB PMID:10490026 NCBI chrNW_004936722:1,252,083...1,264,018 JBrowse link
G Dffb DNA fragmentation factor subunit beta ISO (PMID:10959840) UniProtKB PMID:10959840 NCBI chrNW_004936737:79,789...96,140 JBrowse link
G Ern2 endoplasmic reticulum to nucleus signaling 2 ISO (PMID:11175748) UniProtKB PMID:11175748 NCBI chrNW_004936501:8,332,507...8,350,176 JBrowse link
G Gper1 G protein-coupled estrogen receptor 1 ISO PMID:23907461 UniProt PMID:23907461 RGD:8553942 NCBI chrNW_004936754:1,288,891...1,293,555 JBrowse link
G Top2a DNA topoisomerase II alpha ISO (PMID:10959840) UniProtKB PMID:10959840 NCBI chrNW_004936490:15,441,463...15,465,692 JBrowse link
CENP-A containing nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hjurp Holliday junction recognition protein ISO (PMID:19410544), (PMID:19410545) UniProtKB PMID:19410544, PMID:19410545 NCBI chrNW_004936525:3,528,379...3,544,088 JBrowse link
G Mis18a MIS18 kinetochore protein A ISO (MGI:MGI:5438906|PMID:22516971) MGI PMID:22516971 MGI:MGI:5438906 NCBI chrNW_004936500:9,822,366...9,832,732 JBrowse link
chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdan1 codanin 1 ISO (PMID:22407294) UniProtKB PMID:22407294 NCBI chrNW_004936471:5,988,215...6,001,446 JBrowse link
G Chaf1a chromatin assembly factor 1 subunit A ISO (PMID:8858152) UniProtKB PMID:8858152 NCBI chrNW_004936588:2,536,141...2,564,897 JBrowse link
G Chaf1b chromatin assembly factor 1 subunit B ISO (PMID:8858152) UniProtKB PMID:8858152 NCBI chrNW_004936500:6,262,207...6,288,833 JBrowse link
G Hmgb1 high mobility group box 1 ISO (MGI:MGI:3807115|PMID:18650382) UniProt PMID:18650382 MGI:MGI:3807115 NCBI chrNW_004936472:25,236,728...25,246,585 JBrowse link
G Noc2l NOC2 like nucleolar associated transcriptional repressor ISO (PMID:16322561) UniProtKB PMID:16322561 NCBI chrNW_004936737:2,087,123...2,098,153 JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor ISO (PMID:8858152) UniProtKB PMID:8858152 NCBI chrNW_004936474:15,592,226...15,611,381 JBrowse link
G Tp53 tumor protein p53 ISO (PMID:16322561) UniProtKB PMID:16322561 NCBI chrNW_004936595:919,807...935,367 JBrowse link
chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk1 cyclin dependent kinase 1 ISO RGD PMID:15695611 RGD:2301352 NCBI chrNW_004936614:2,300,682...2,313,611 JBrowse link
G Smc5 structural maintenance of chromosomes 5 ISO (MGI:MGI:5882483|PMID:26919979) MGI PMID:26919979 MGI:MGI:5882483 NCBI chrNW_004936503:6,388,556...6,483,293 JBrowse link
G Top2a DNA topoisomerase II alpha ISO (MGI:MGI:2158879|PMID:11835580) MGI PMID:11835580 MGI:MGI:2158879 NCBI chrNW_004936490:15,441,463...15,465,692 JBrowse link
DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt3a DNA methyltransferase 3 alpha ISO (MGI:MGI:3611125|PMID:16322236)
(MGI:MGI:3768461|PMID:17938196)
MGI PMID:16322236, PMID:17938196 MGI:MGI:3611125, MGI:MGI:3768461 NCBI chrNW_004936493:6,963,406...7,013,256 JBrowse link
G Dnmt3b DNA methyltransferase 3 beta ISO (MGI:MGI:3768461|PMID:17938196) MGI PMID:17938196 MGI:MGI:3768461 NCBI chrNW_004936485:19,547,836...19,570,716 JBrowse link
G Hdac1 histone deacetylase 1 ISO (PMID:23770133) BHF-UCL PMID:23770133 NCBI chrNW_004936474:15,320,635...15,351,418 JBrowse link
G Hells helicase, lymphoid specific ISO (MGI:MGI:3573964|PMID:15647320) UniProtKB PMID:15647320 MGI:MGI:3573964 NCBI chrNW_004936601:626,354...662,477 JBrowse link
G Mbd2 methyl-CpG binding domain protein 2 ISO (PMID:23770133) BHF-UCL PMID:23770133 NCBI chrNW_004936497:9,512,350...9,619,250 JBrowse link
G Mbd3 methyl-CpG binding domain protein 3 ISO (MGI:MGI:3611125|PMID:16322236) MGI PMID:16322236 MGI:MGI:3611125 NCBI chrNW_004936588:865,046...873,821 JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 ISO (MGI:MGI:3611125|PMID:16322236) MGI PMID:16322236 MGI:MGI:3611125 NCBI chrNW_004936659:1,152,846...1,246,718 JBrowse link
DNA replication-dependent nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asf1a anti-silencing function 1A histone chaperone ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004936658:1,699,150...1,713,079 JBrowse link
G Asf1b anti-silencing function 1B histone chaperone ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004936659:2,772,310...2,782,687 JBrowse link
G Chaf1a chromatin assembly factor 1 subunit A ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004936588:2,536,141...2,564,897 JBrowse link
G Chaf1b chromatin assembly factor 1 subunit B ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004936500:6,262,207...6,288,833 JBrowse link
G Hat1 histone acetyltransferase 1 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004936509:2,105,866...2,153,089 JBrowse link
G Ipo4 importin 4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004936722:359,741...370,514 JBrowse link
G LOC101956307 histone H3 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004936671:3,131,668...3,132,428 JBrowse link
G LOC101966143 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004936580:173,731...175,254 JBrowse link
G LOC101967236 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004936671:2,803,784...2,804,173 JBrowse link
G LOC101972420 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004936671:2,019,007...2,019,428 JBrowse link
G LOC101972801 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004936671:1,953,045...1,953,612 JBrowse link
G LOC101974797 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004936671:1,881,645...1,882,070 JBrowse link
G LOC101978127 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004936587:2,702,038...2,704,472 JBrowse link
G LOC106145261 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004936671:1,888,128...1,888,666 JBrowse link
G Nasp nuclear autoantigenic sperm protein ISO (MGI:MGI:3694318|PMID:16728391)
(PMID:14718166)
UniProt
UniProtKB
PMID:14718166, PMID:16728391 MGI:MGI:3694318 NCBI chrNW_004936474:26,710,364...26,743,336 JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004936474:15,592,226...15,611,381 JBrowse link
DNA replication-independent nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asf1a anti-silencing function 1A histone chaperone ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004936658:1,699,150...1,713,079 JBrowse link
G Asf1b anti-silencing function 1B histone chaperone ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004936659:2,772,310...2,782,687 JBrowse link
G Atrx ATRX chromatin remodeler ISO (PMID:22391447) UniProtKB PMID:22391447 NCBI chrNW_004936683:2,496,307...2,718,539 JBrowse link
G Cabin1 calcineurin binding protein 1 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004936619:890,474...1,030,914 JBrowse link
G Hat1 histone acetyltransferase 1 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004936509:2,105,866...2,153,089 JBrowse link
G Ipo4 importin 4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004936722:359,741...370,514 JBrowse link
G LOC101957075 protein HIRA ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004936619:3,282,170...3,380,151 JBrowse link
G LOC101963041 histone H3.3 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004936526:2,835,002...2,842,328 JBrowse link
G LOC101963257 histone H3.3 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004936594:959,493...961,703 JBrowse link
G LOC101966143 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004936580:173,731...175,254 JBrowse link
G LOC101967236 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004936671:2,803,784...2,804,173 JBrowse link
G LOC101972420 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004936671:2,019,007...2,019,428 JBrowse link
G LOC101972801 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004936671:1,953,045...1,953,612 JBrowse link
G LOC101974797 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004936671:1,881,645...1,882,070 JBrowse link
G LOC101978127 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004936587:2,702,038...2,704,472 JBrowse link
G LOC106145261 histone H4 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004936671:1,888,128...1,888,666 JBrowse link
G Nasp nuclear autoantigenic sperm protein ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004936474:26,710,364...26,743,336 JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004936474:15,592,226...15,611,381 JBrowse link
G Ubn1 ubinuclein 1 ISO (PMID:14718166) UniProtKB PMID:14718166 NCBI chrNW_004936530:4,795,974...4,826,217 JBrowse link
heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bahd1 bromo adjacent homology domain containing 1 ISO (PMID:19666599) UniProtKB PMID:19666599 NCBI chrNW_004936471:3,902,558...3,927,746 JBrowse link
G Baz2a bromodomain adjacent to zinc finger domain 2A ISO (MGI:MGI:3653583|PMID:16678107)
(MGI:MGI:4462332|PMID:20168299)
MGI PMID:16678107, PMID:20168299 MGI:MGI:3653583, MGI:MGI:4462332 NCBI chrNW_004936646:914,944...949,057 JBrowse link
G Ezh1 enhancer of zeste 1 polycomb repressive complex 2 subunit ISO (MGI:MGI:3820717|PMID:19026781) ARUK-UCL PMID:19026781 MGI:MGI:3820717 NCBI chrNW_004936490:17,430,383...17,465,889 JBrowse link
G Hmga2 high mobility group AT-hook 2 ISO (PMID:16901784) UniProtKB PMID:16901784 NCBI chrNW_004936545:3,944,419...3,958,289 JBrowse link
G Sirt1 sirtuin 1 ISO (PMID:15469825) BHF-UCL PMID:15469825 NCBI chrNW_004936521:10,296,097...10,316,673 JBrowse link
histone H3-S10 phosphorylation involved in chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnb1 cyclin B1 ISO (MGI:MGI:5494393|PMID:22053081) MGI PMID:22053081 MGI:MGI:5494393 NCBI chrNW_004936480:400,287...407,677 JBrowse link
inactivation of X chromosome by heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smchd1 structural maintenance of chromosomes flexible hinge domain containing 1 ISO (MGI:MGI:5532809|PMID:23754746) UniProtKB PMID:23754746 MGI:MGI:5532809 NCBI chrNW_004936672:1,686,070...1,838,315 JBrowse link
meiotic chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mastl microtubule associated serine/threonine kinase like ISO (PMID:23843240) AgBase PMID:23843240 NCBI chrNW_004936484:2,276,463...2,306,119 JBrowse link
G Ncaph non-SMC condensin I complex subunit H ISO (MGI:MGI:5317363|PMID:21795393)
(MGI:MGI:5784807|PMID:25961503)
MGI PMID:21795393, PMID:25961503 MGI:MGI:5317363, MGI:MGI:5784807 NCBI chrNW_004936744:440,958...468,964 JBrowse link
G Ncaph2 non-SMC condensin II complex subunit H2 ISO (MGI:MGI:5784807|PMID:25961503) MGI PMID:25961503 MGI:MGI:5784807 NCBI chrNW_004936629:320,885...327,290 JBrowse link
G Smc2 structural maintenance of chromosomes 2 ISO (MGI:MGI:5317363|PMID:21795393) MGI PMID:21795393 MGI:MGI:5317363 NCBI chrNW_004936793:909,663...958,883 JBrowse link
G Smc4 structural maintenance of chromosomes 4 ISO (MGI:MGI:5317363|PMID:21795393) MGI PMID:21795393 MGI:MGI:5317363 NCBI chrNW_004936708:362,605...395,217 JBrowse link
mitotic chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akap8 A-kinase anchoring protein 8 ISO (MGI:MGI:3512088|PMID:12082153) MGI PMID:12082153 MGI:MGI:3512088 NCBI chrNW_004936596:5,123,988...5,142,326 JBrowse link
G Akap8l A-kinase anchoring protein 8 like ISO (PMID:11034899) UniProtKB PMID:11034899 NCBI chrNW_004936596:5,088,260...5,123,735 JBrowse link
G Cdca5 cell division cycle associated 5 ISO (PMID:15837422) UniProtKB PMID:15837422 NCBI chrNW_004936599:4,285,007...4,291,875 JBrowse link
G Chmp1a charged multivesicular body protein 1A ISO (PMID:11559747) UniProtKB PMID:11559747 NCBI chrNW_004936641:366,563...376,303 JBrowse link
G Ncapd2 non-SMC condensin I complex subunit D2 ISO (PMID:11136719)
(PMID:27737959)
UniProtKB
UniProt
PMID:11136719, PMID:27737959 NCBI chrNW_004936709:1,250,442...1,275,823 JBrowse link
G Ncapd3 non-SMC condensin II complex subunit D3 ISO (PMID:14532007)
(PMID:27737959)
UniProtKB
UniProt
PMID:14532007, PMID:27737959 NCBI chrNW_004936684:1,618,271...1,687,905 JBrowse link
G Ncapg non-SMC condensin I complex subunit G ISO (PMID:11136719) UniProtKB PMID:11136719 NCBI chrNW_004936477:10,408,347...10,445,361 JBrowse link
G Ncaph non-SMC condensin I complex subunit H ISO (PMID:27737959)
(PMID:11136719), (PMID:11694586)
UniProt
UniProtKB
PMID:11136719, PMID:11694586, PMID:27737959 NCBI chrNW_004936744:440,958...468,964 JBrowse link
G Ncaph2 non-SMC condensin II complex subunit H2 ISO (MGI:MGI:5905517|PMID:27737959) UniProt PMID:27737959 MGI:MGI:5905517 NCBI chrNW_004936629:320,885...327,290 JBrowse link
G Nusap1 nucleolar and spindle associated protein 1 ISO (PMID:12963707) MGI PMID:12963707 NCBI chrNW_004936471:4,705,757...4,732,446 JBrowse link
G Phf13 PHD finger protein 13 ISO (PMID:19638409) UniProtKB PMID:19638409 NCBI chrNW_004936623:1,364,422...1,372,226 JBrowse link
G Smc2 structural maintenance of chromosomes 2 ISO (PMID:11136719) UniProtKB PMID:11136719 NCBI chrNW_004936793:909,663...958,883 JBrowse link
G Smc4 structural maintenance of chromosomes 4 ISO (PMID:11136719) UniProtKB PMID:11136719 NCBI chrNW_004936708:362,605...395,217 JBrowse link
G Ttn titin ISO (PMID:9548712) BHF-UCL PMID:9548712 NCBI chrNW_004936509:7,733,426...7,999,503 JBrowse link
negative regulation of chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101963041 histone H3.3 ISO (MGI:MGI:5502235|PMID:23903189) MGI PMID:23903189 MGI:MGI:5502235 NCBI chrNW_004936526:2,835,002...2,842,328 JBrowse link
G LOC101963257 histone H3.3 ISO (MGI:MGI:5502235|PMID:23903189) MGI PMID:23903189 MGI:MGI:5502235 NCBI chrNW_004936594:959,493...961,703 JBrowse link
negative regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation induced cytidine deaminase ISO (PMID:21496894) UniProtKB PMID:21496894 NCBI chrNW_004936870:25,039...34,601 JBrowse link
G Tet1 tet methylcytosine dioxygenase 1 ISO (PMID:21496894) UniProtKB PMID:21496894 NCBI chrNW_004936521:9,646,581...9,765,244 JBrowse link
negative regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phf2 PHD finger protein 2 ISO (PMID:20129925) UniProtKB PMID:20129925 NCBI chrNW_004936487:2,912,114...2,956,429 JBrowse link
G Phf8 PHD finger protein 8 ISO (PMID:20208542) UniProtKB PMID:20208542 NCBI chrNW_004936751:850,630...935,382 JBrowse link
nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anp32b acidic nuclear phosphoprotein 32 family member B ISO (PMID:20538007) UniProtKB PMID:20538007 NCBI chrNW_004936524:6,735,047...6,757,874 JBrowse link
G Asf1a anti-silencing function 1A histone chaperone ISO (PMID:11897662) MGI PMID:11897662 NCBI chrNW_004936658:1,699,150...1,713,079 JBrowse link
G Asf1b anti-silencing function 1B histone chaperone ISO (MGI:MGI:2675150|PMID:12842904) MGI PMID:12842904 MGI:MGI:2675150 NCBI chrNW_004936659:2,772,310...2,782,687 JBrowse link
G Atrx ATRX chromatin remodeler ISO (PMID:20651253) UniProtKB PMID:20651253 NCBI chrNW_004936683:2,496,307...2,718,539 JBrowse link
G Brd2 bromodomain containing 2 ISO (PMID:18406326) UniProtKB PMID:18406326 NCBI chrNW_004936476:25,807,179...25,818,914 JBrowse link
G Daxx death domain associated protein ISO (MGI:MGI:5567907|PMID:20651253)
(PMID:20504901), (PMID:20651253)
UniProtKB PMID:20504901, PMID:20651253 MGI:MGI:5567907 NCBI chrNW_004936476:25,546,091...25,550,390 JBrowse link
G Grwd1 glutamate rich WD repeat containing 1 ISO (PMID:25990725)
(PMID:27552915)
UniProtKB PMID:25990725, PMID:27552915 NCBI chrNW_004936664:2,548,178...2,555,234 JBrowse link
G Hmgb1 high mobility group box 1 ISO (PMID:2465778) AgBase PMID:2465778 NCBI chrNW_004936472:25,236,728...25,246,585 JBrowse link
G Hmgb2 high mobility group box 2 ISO (PMID:2465778) AgBase PMID:2465778 NCBI chrNW_004936516:4,536,664...4,539,331 JBrowse link
G LOC101956307 histone H3 ISO (PMID:25615412)
(PMID:20498094), (PMID:21636898), (PMID:24699735)
UniProtKB PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chrNW_004936671:3,131,668...3,132,428 JBrowse link
G LOC101963041 histone H3.3 ISO (PMID:25615412)
(PMID:21636898)
UniProtKB PMID:21636898, PMID:25615412 NCBI chrNW_004936526:2,835,002...2,842,328 JBrowse link
G LOC101963257 histone H3.3 ISO (PMID:25615412)
(PMID:21636898)
UniProtKB PMID:21636898, PMID:25615412 NCBI chrNW_004936594:959,493...961,703 JBrowse link
G LOC101966143 histone H4 ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProtKB PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chrNW_004936580:173,731...175,254 JBrowse link
G LOC101967165 histone H2A-Bbd type 2/3 ISO (PMID:22795134) UniProtKB PMID:22795134 NCBI chrNW_004936927:232,353...232,857 JBrowse link
G LOC101967236 histone H4 ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProtKB PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chrNW_004936671:2,803,784...2,804,173 JBrowse link
G LOC101967299 histone H3 ISO (PMID:21636898), (PMID:25615412) UniProtKB PMID:21636898, PMID:25615412 NCBI chrNW_004936580:202,146...204,499 JBrowse link
G LOC101972420 histone H4 ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProtKB PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chrNW_004936671:2,019,007...2,019,428 JBrowse link
G LOC101972801 histone H4 ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProtKB PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chrNW_004936671:1,953,045...1,953,612 JBrowse link
G LOC101974797 histone H4 ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProtKB PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chrNW_004936671:1,881,645...1,882,070 JBrowse link
G LOC101978127 histone H4 ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProtKB PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chrNW_004936587:2,702,038...2,704,472 JBrowse link
G LOC106145261 histone H4 ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) UniProtKB PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chrNW_004936671:1,888,128...1,888,666 JBrowse link
G Mcm2 minichromosome maintenance complex component 2 ISO (MGI:MGI:2156014|PMID:10531422) MGI PMID:10531422 MGI:MGI:2156014 NCBI chrNW_004936798:756,350...768,600 JBrowse link
G Naa60 N-alpha-acetyltransferase 60, NatF catalytic subunit ISO (PMID:21981917) UniProtKB PMID:21981917 NCBI chrNW_004936694:818,386...838,258 JBrowse link
G Nap1l4 nucleosome assembly protein 1 like 4 ISO (MGI:MGI:5897488|PMID:28366643)
(PMID:9325046)
UniProtKB PMID:9325046, PMID:28366643 MGI:MGI:5897488 NCBI chrNW_004936794:1,074,126...1,106,613 JBrowse link
G Nasp nuclear autoantigenic sperm protein ISO (PMID:25615412) UniProtKB PMID:25615412 NCBI chrNW_004936474:26,710,364...26,743,336 JBrowse link
G Npm1 nucleophosmin 1 ISO (PMID:11602260) UniProtKB PMID:11602260 NCBI chrNW_004936609:3,712,628...3,725,635 JBrowse link
G Padi4 peptidyl arginine deiminase 4 ISO (MGI:MGI:5545819|PMID:24463520) UniProtKB PMID:24463520 MGI:MGI:5545819 NCBI chrNW_004936474:4,219,183...4,239,551 JBrowse link
G Rsf1 remodeling and spacing factor 1 ISO (PMID:12972596) UniProtKB PMID:12972596 NCBI chrNW_004936498:6,273,740...6,432,127 JBrowse link
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein ISO (PMID:24526689) UniProtKB PMID:24526689 NCBI chrNW_004936769:450,919...490,938 JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 ISO (PMID:12972596) UniProtKB PMID:12972596 NCBI chrNW_004936535:4,857,816...4,890,266 JBrowse link
G Smyd3 SET and MYND domain containing 3 ISO (MGI:MGI:5500979|PMID:23752591) MGI PMID:23752591 MGI:MGI:5500979 NCBI chrNW_004936526:4,536,157...5,218,883 JBrowse link
G Sox9 SRY-box transcription factor 9 ISO (PMID:20484372) UniProtKB PMID:20484372 NCBI chrNW_004936655:1,849,044...1,852,648 JBrowse link
G Spty2d1 SPT2 chromatin protein domain containing 1 ISO (PMID:23378026) UniProtKB PMID:23378026 NCBI chrNW_004936528:667,453...689,291 JBrowse link
nucleosome positioning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctcf CCCTC-binding factor ISO (PMID:18654629) UniProtKB PMID:18654629 NCBI chrNW_004936475:17,987,137...18,031,733 JBrowse link
G H1-2 H1.2 linker histone, cluster member ISO (MGI:MGI:2664444|PMID:12808097) MGI PMID:12808097 MGI:MGI:2664444 NCBI chrNW_004936671:1,907,356...1,911,821 JBrowse link
G LOC101971055 histone H1oo ISO (MGI:MGI:5559660|PMID:22868987) UniProtKB PMID:22868987 MGI:MGI:5559660 NCBI chrNW_004936602:885,478...890,014 JBrowse link
G Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component ISO (PMID:22046413) CACAO PMID:22046413 NCBI chrNW_004936661:2,236,121...2,241,086 JBrowse link
G Rsf1 remodeling and spacing factor 1 ISO (PMID:9836642) UniProtKB PMID:9836642 NCBI chrNW_004936498:6,273,740...6,432,127 JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 ISO (PMID:9836642) UniProtKB PMID:9836642 NCBI chrNW_004936535:4,857,816...4,890,266 JBrowse link
pericentric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cenpv centromere protein V ISO (PMID:18772885) UniProtKB PMID:18772885 NCBI chrNW_004936821:267,137...276,969 JBrowse link
G Dicer1 dicer 1, ribonuclease III ISO (MGI:MGI:3528782|PMID:15713842) MGI PMID:15713842 MGI:MGI:3528782 NCBI chrNW_004936846:528,768...584,599 JBrowse link
G Hells helicase, lymphoid specific ISO (MGI:MGI:3041983|PMID:14612388) UniProtKB PMID:14612388 MGI:MGI:3041983 NCBI chrNW_004936601:626,354...662,477 JBrowse link
G LOC101963041 histone H3.3 ISO (MGI:MGI:5694896|PMID:26159997) MGI PMID:26159997 MGI:MGI:5694896 NCBI chrNW_004936526:2,835,002...2,842,328 JBrowse link
G LOC101963257 histone H3.3 ISO (MGI:MGI:5694896|PMID:26159997) MGI PMID:26159997 MGI:MGI:5694896 NCBI chrNW_004936594:959,493...961,703 JBrowse link
positive regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf7ip activating transcription factor 7 interacting protein ISO (PMID:27732843) UniProt PMID:27732843 NCBI chrNW_004936587:2,922,855...3,026,773 JBrowse link
G Dnmt1 DNA methyltransferase 1 ISO (PMID:24623306) UniProtKB PMID:24623306 NCBI chrNW_004936659:520,181...565,496 JBrowse link
G Morc2 MORC family CW-type zinc finger 2 ISO (PMID:28581500), (PMID:29211708)
(MGI:MGI:6271895|PMID:29728365)
UniProt PMID:28581500, PMID:29211708, PMID:29728365 MGI:MGI:6271895 NCBI chrNW_004936755:133,315...171,507 JBrowse link
G Mphosph8 M-phase phosphoprotein 8 ISO (PMID:28581500), (PMID:29211708) UniProt PMID:28581500, PMID:29211708 NCBI chrNW_004936720:1,972,063...2,025,283 JBrowse link
G Pphln1 periphilin 1 ISO (PMID:28581500) UniProt PMID:28581500 NCBI chrNW_004936512:1,001,733...1,158,647 JBrowse link
G Resf1 retroelement silencing factor 1 ISO (MGI:MGI:6271895|PMID:29728365) UniProt PMID:29728365 MGI:MGI:6271895 NCBI chrNW_004936607:4,247,824...4,274,410 JBrowse link
G Setdb1 SET domain bifurcated histone lysine methyltransferase 1 ISO (MGI:MGI:5440670|PMID:20164836), (MGI:MGI:6271895|PMID:29728365)
(PMID:24623306), (PMID:27732843)
UniProt PMID:20164836, PMID:24623306, PMID:27732843, PMID:29728365 MGI:MGI:5440670, MGI:MGI:6271895 NCBI chrNW_004936580:1,146,286...1,192,842 JBrowse link
G Tasor transcription activation suppressor ISO (PMID:28581500), (PMID:29211708) UniProt PMID:28581500, PMID:29211708 NCBI chrNW_004936473:7,053,797...7,098,608 JBrowse link
G Trim28 tripartite motif containing 28 ISO (PMID:24623306)
(MGI:MGI:5440670|PMID:20164836)
UniProtKB
UniProt
PMID:20164836, PMID:24623306 MGI:MGI:5440670 NCBI chrNW_004937062:126,832...132,938 JBrowse link
G Znf304 zinc finger protein 304 ISO (PMID:24623306) UniProtKB PMID:24623306 NCBI chrNW_004936897:244,051...253,580 JBrowse link
positive regulation of heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tpr translocated promoter region, nuclear basket protein ISO (PMID:20407419) UniProtKB PMID:20407419 NCBI chrNW_004936481:4,050,693...4,111,682 JBrowse link
positive regulation of subtelomeric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sirt6 sirtuin 6 ISO (PMID:21847107) BHF-UCL PMID:21847107 NCBI chrNW_004936588:2,387,162...2,394,066 JBrowse link
rDNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baz2a bromodomain adjacent to zinc finger domain 2A ISO (MGI:MGI:3587127|PMID:16085498), (MGI:MGI:3653583|PMID:16678107), (MGI:MGI:3852313|PMID:12198165), (MGI:MGI:3852588|PMID:19578370)
(MGI:MGI:4462332|PMID:20168299)
MGI PMID:12198165, PMID:16085498, PMID:16678107, PMID:19578370, PMID:20168299 MGI:MGI:3587127, MGI:MGI:3653583, MGI:MGI:3852313, MGI:MGI:3852588, MGI:MGI:4462332 NCBI chrNW_004936646:914,944...949,057 JBrowse link
G Bend3 BEN domain containing 3 ISO (PMID:26100909) UniProtKB PMID:26100909 NCBI chrNW_004936564:3,495,020...3,513,684 JBrowse link
G Rrp8 ribosomal RNA processing 8 ISO (PMID:18485871) UniProtKB PMID:18485871 NCBI chrNW_004936842:656,508...661,894 JBrowse link
G Sirt1 sirtuin 1 ISO (PMID:18485871) UniProtKB PMID:18485871 NCBI chrNW_004936521:10,296,097...10,316,673 JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 ISO (MGI:MGI:3587127|PMID:16085498) UniProtKB PMID:16085498 MGI:MGI:3587127 NCBI chrNW_004936535:4,857,816...4,890,266 JBrowse link
G Suv39h1 suppressor of variegation 3-9 homolog 1 ISO (PMID:18485871) UniProtKB PMID:18485871 NCBI chrNW_004936721:646,778...661,144 JBrowse link
G Ubtf upstream binding transcription factor ISO (MGI:MGI:3836497|PMID:19103806) MGI PMID:19103806 MGI:MGI:3836497 NCBI chrNW_004936541:671,178...687,485 JBrowse link
regulation of chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Parp10 poly(ADP-ribose) polymerase family member 10 ISO (PMID:15674325) UniProtKB PMID:15674325 NCBI chrNW_004936470:8,179,416...8,194,041 JBrowse link
G Spty2d1 SPT2 chromatin protein domain containing 1 ISO (PMID:26109053) UniProtKB PMID:26109053 NCBI chrNW_004936528:667,453...689,291 JBrowse link
regulation of chromosome condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnb1 cyclin B1 ISO positive regulation RGD PMID:15291744 RGD:1578405 NCBI chrNW_004936480:400,287...407,677 JBrowse link
G Mcph1 microcephalin 1 ISO (MGI:MGI:4437500|PMID:20169082) MGI PMID:20169082 MGI:MGI:4437500 NCBI chrNW_004936615:4,386,667...4,580,720 JBrowse link
G Wapl WAPL cohesin release factor ISO (MGI:MGI:5544860|PMID:23975099) MGI PMID:23975099 MGI:MGI:5544860 NCBI chrNW_004936804:354,201...431,655 JBrowse link
regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pou5f1 POU class 5 homeobox 1 ISO (PMID:19736317) BHF-UCL PMID:19736317 NCBI chrNW_004936837:827,568...838,933 JBrowse link
regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101971629 core histone macro-H2A.1 NOT ISO (PMID:24071584) UniProtKB PMID:24071584 NCBI chrNW_004936597:2,496,489...2,556,352 JBrowse link
senescence-associated heterochromatin focus assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmga1 high mobility group AT-hook 1 ISO (PMID:16901784) UniProtKB PMID:16901784 NCBI chrNW_004936476:24,795,854...24,803,138 JBrowse link
G Hmga2 high mobility group AT-hook 2 ISO (PMID:16901784) UniProtKB PMID:16901784 NCBI chrNW_004936545:3,944,419...3,958,289 JBrowse link
sperm chromatin condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fshr follicle stimulating hormone receptor ISO (MGI:MGI:1855818|PMID:10775161) MGI PMID:10775161 MGI:MGI:1855818 NCBI chrNW_004936508:3,601,205...3,754,234 JBrowse link
G LOC101974551 testis-specific H1 histone ISO (MGI:MGI:3531623|PMID:15710904) UniProtKB PMID:15710904 MGI:MGI:3531623 NCBI chrNW_004936512:6,199,894...6,200,786 JBrowse link
G Selenof selenoprotein F ISO RGD PMID:11344099 RGD:728803 NCBI chrNW_004936732:1,947,357...1,978,328 JBrowse link
G Sycp1 synaptonemal complex protein 1 ISO (MGI:MGI:5315075|PMID:22164254) MGI PMID:22164254 MGI:MGI:5315075 NCBI chrNW_004936627:239,232...365,062 JBrowse link
G Sycp3 synaptonemal complex protein 3 ISO (MGI:MGI:5315075|PMID:22164254) MGI PMID:22164254 MGI:MGI:5315075 NCBI chrNW_004936492:12,316,868...12,326,778 JBrowse link
G Tssk6 testis specific serine kinase 6 ISO (MGI:MGI:3580211|PMID:15870294) UniProtKB PMID:15870294 MGI:MGI:3580211 NCBI chrNW_004936596:1,953,797...1,955,753 JBrowse link
spermatogenesis, exchange of chromosomal proteins term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chd5 chromodomain helicase DNA binding protein 5 ISO (MGI:MGI:5559810|PMID:24252660) UniProtKB PMID:24252660 MGI:MGI:5559810 NCBI chrNW_004936623:988,423...1,046,969 JBrowse link
G Fshr follicle stimulating hormone receptor ISO (MGI:MGI:2682484|PMID:14680821) MGI PMID:14680821 MGI:MGI:2682484 NCBI chrNW_004936508:3,601,205...3,754,234 JBrowse link
G Piwil1 piwi like RNA-mediated gene silencing 1 ISO (MGI:MGI:5905675|PMID:28552346) UniProtKB PMID:28552346 MGI:MGI:5905675 NCBI chrNW_004936660:1,398,640...1,418,865 JBrowse link
G Psme4 proteasome activator subunit 4 ISO (MGI:MGI:5494329|PMID:23706739) UniProtKB PMID:23706739 MGI:MGI:5494329 NCBI chrNW_004936491:404,921...503,783 JBrowse link
G Rnf8 ring finger protein 8 ISO (MGI:MGI:5905675|PMID:28552346) UniProtKB PMID:28552346 MGI:MGI:5905675 NCBI chrNW_004936476:22,074,146...22,121,286 JBrowse link
G Sycp3 synaptonemal complex protein 3 ISO (PMID:14643120) UniProtKB PMID:14643120 NCBI chrNW_004936492:12,316,868...12,326,778 JBrowse link
G Tnp1 transition protein 1 ISO (MGI:MGI:3041389|PMID:15083521), (MGI:MGI:3056208|PMID:15189834), (MGI:MGI:3620321|PMID:15163613), (MGI:MGI:5897488|PMID:28366643) UniProtKB PMID:15083521, PMID:15163613, PMID:15189834, PMID:28366643 MGI:MGI:3041389, MGI:MGI:3056208, MGI:MGI:3620321, MGI:MGI:5897488 NCBI chrNW_004936586:504,864...505,447 JBrowse link
subtelomeric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101963041 histone H3.3 ISO (MGI:MGI:5694896|PMID:26159997) MGI PMID:26159997 MGI:MGI:5694896 NCBI chrNW_004936526:2,835,002...2,842,328 JBrowse link
G LOC101963257 histone H3.3 ISO (MGI:MGI:5694896|PMID:26159997) MGI PMID:26159997 MGI:MGI:5694896 NCBI chrNW_004936594:959,493...961,703 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11968
    cellular process 11136
      cellular component organization or biogenesis 4888
        cellular component organization 4810
          organelle organization 2972
            chromosome organization 864
              DNA conformation change 160
                DNA packaging 125
                  chromatin assembly + 89
                  chromosome condensation + 27
                  nonrepetitive DNA condensation 0
                  nucleoid DNA packaging + 0
                  rDNA condensation 0
                  sperm chromatin condensation + 11
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.