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ONTOLOGY REPORT - ANNOTATIONS


Term:chromatin assembly or disassembly
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Accession:GO:0006333 term browser browse the term
Definition:The formation or destruction of chromatin structures.
Synonyms:exact_synonym: chromatin assembly/disassembly


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chromatin assembly or disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baz1b bromodomain adjacent to zinc finger domain, 1B ISO (MGI:MGI:2179578|PMID:11980720) RGD PMID:11980720 MGI:MGI:2179578 NCBI chr12:24,478,882...24,536,851
Ensembl chr12:24,478,898...24,537,313
JBrowse link
G Chd3 chromodomain helicase DNA binding protein 3 ISO (MGI:MGI:1333986|PMID:10204490) RGD PMID:10204490 MGI:MGI:1333986 NCBI chr10:55,943,467...55,970,417
Ensembl chr10:55,943,446...55,965,216
JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 ISO (MGI:MGI:2179578|PMID:11980720) RGD PMID:11980720 MGI:MGI:2179578 NCBI chr19:30,936,703...30,969,454
Ensembl chr19:30,936,703...30,969,454
JBrowse link
G Suv39h2 suppressor of variegation 3-9 homolog 2 ISO (PMID:10949293) RGD PMID:10949293 NCBI chr17:78,762,897...78,782,016
Ensembl chr17:78,762,991...78,782,016
JBrowse link
CENP-A containing nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cenpp centromere protein P IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:15,429,526...15,603,197
Ensembl chr17:15,429,708...15,603,199
JBrowse link
G Hjurp Holliday junction recognition protein ISO (PMID:19410544), (PMID:19410545) RGD PMID:19410544, PMID:19410545 NCBI chr 9:95,347,739...95,362,228
Ensembl chr 9:95,349,086...95,362,014
JBrowse link
G Itgb3bp integrin subunit beta 3 binding protein IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:118,476,410...118,541,928
Ensembl chr 5:118,476,430...118,673,780
JBrowse link
G Mis18a MIS18 kinetochore protein A ISO
IBA
MGI:MGI:5441069 (MGI:MGI:5438906|PMID:22516971)
PMID:21873635
RGD PMID:22516971, PMID:21873635 MGI:MGI:5438906, RGD:13792537 NCBI chr11:30,880,231...30,893,262
Ensembl chr11:30,879,887...30,893,310
JBrowse link
G Nasp nuclear autoantigenic sperm protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:135,446,485...135,472,113
Ensembl chr 5:135,446,962...135,472,116
JBrowse link
G Oip5 Opa interacting protein 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:111,413,662...111,422,320
Ensembl chr 3:111,416,536...111,422,203
JBrowse link
chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdan1 codanin 1 ISO (PMID:22407294) RGD PMID:22407294 NCBI chr 3:112,660,839...112,676,596
Ensembl chr 3:112,663,383...112,676,556
JBrowse link
G Chaf1a chromatin assembly factor 1 subunit A ISO (PMID:8858152) RGD PMID:8858152 NCBI chr 9:11,000,869...11,027,631
Ensembl chr 9:11,001,129...11,027,506
JBrowse link
G Chaf1b chromatin assembly factor 1 subunit B ISO (PMID:8858152) RGD PMID:8858152 NCBI chr11:34,101,248...34,121,371
Ensembl chr11:34,101,197...34,121,378
JBrowse link
G Hmgb1 high mobility group box 1 ISO (MGI:MGI:3807115|PMID:18650382) RGD PMID:18650382 MGI:MGI:3807115 NCBI chr12:7,082,529...7,090,246
Ensembl chr16:37,500,017...37,502,237
JBrowse link
G Noc2l NOC2-like nucleolar associated transcriptional repressor ISO (PMID:16322561) RGD PMID:16322561 NCBI chr 5:173,659,796...173,672,699
Ensembl chr 5:173,660,921...173,672,459
JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor ISO (PMID:8858152) RGD PMID:8858152 NCBI chr 5:147,499,880...147,535,240
Ensembl chr 5:147,499,882...147,535,240
JBrowse link
G Tp53 tumor protein p53 ISO (PMID:16322561) RGD PMID:16322561 NCBI chr10:56,186,299...56,198,449
Ensembl chr10:56,187,020...56,198,449
JBrowse link
DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnmt3a DNA methyltransferase 3 alpha ISO MGI:MGI:1261819 (MGI:MGI:3611125|PMID:16322236), (MGI:MGI:3768461|PMID:17938196) RGD PMID:16322236, PMID:17938196 MGI:MGI:3611125, MGI:MGI:3768461 NCBI chr 6:28,205,375...28,346,052
Ensembl chr 6:28,235,695...28,340,577
JBrowse link
G Dnmt3b DNA methyltransferase 3 beta ISO MGI:MGI:1261827 (MGI:MGI:3768461|PMID:17938196) RGD PMID:17938196 MGI:MGI:3768461 NCBI chr 3:149,131,541...149,170,061
Ensembl chr 3:149,131,785...149,208,786
JBrowse link
G Hdac1 histone deacetylase 1 ISO UniProtKB:Q9UBB5 (PMID:23770133) RGD PMID:23770133 NCBI chr 5:147,716,664...147,743,723
Ensembl chr 5:147,716,664...147,743,723
JBrowse link
G Hells helicase, lymphoid specific ISO
IBA
(MGI:MGI:3573964|PMID:15647320)
PMID:21873635
RGD PMID:15647320, PMID:21873635 MGI:MGI:3573964, RGD:13792537 NCBI chr 1:257,901,856...257,953,889
Ensembl chr 1:257,766,691...257,949,183
Ensembl chr 1:257,766,691...257,949,183
JBrowse link
G LOC100911660 lymphocyte-specific helicase-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:257,614,688...257,660,184
Ensembl chr 1:257,766,691...257,949,183
Ensembl chr 1:257,766,691...257,949,183
JBrowse link
G Mbd2 methyl-CpG binding domain protein 2 ISO UniProtKB:Q13547 (PMID:23770133) RGD PMID:23770133 NCBI chr18:65,814,026...65,885,115
Ensembl chr18:65,814,026...65,885,114
JBrowse link
G Mbd3 methyl-CpG binding domain protein 3 ISO (MGI:MGI:3611125|PMID:16322236) RGD PMID:16322236 MGI:MGI:3611125 NCBI chr 7:12,179,046...12,186,251
Ensembl chr 7:12,179,203...12,186,656
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 ISO (MGI:MGI:3611125|PMID:16322236) RGD PMID:16322236 MGI:MGI:3611125 NCBI chr 8:22,648,323...22,739,468
Ensembl chr 8:22,648,323...22,739,468
JBrowse link
DNA replication-dependent nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asf1a anti-silencing function 1A histone chaperone ISO
IBA
(PMID:14718166)
PMID:21873635
RGD PMID:14718166, PMID:21873635 RGD:13792537 NCBI chr20:34,894,419...34,909,265
Ensembl chr20:34,894,419...34,909,265
JBrowse link
G Asf1b anti-silencing function 1B histone chaperone ISO
IBA
(PMID:14718166)
PMID:21873635
RGD PMID:14718166, PMID:21873635 RGD:13792537 NCBI chr19:25,077,918...25,092,491
Ensembl chr19:25,077,918...25,092,491
JBrowse link
G Chaf1a chromatin assembly factor 1 subunit A ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 9:11,000,869...11,027,631
Ensembl chr 9:11,001,129...11,027,506
JBrowse link
G Chaf1b chromatin assembly factor 1 subunit B ISO (PMID:14718166) RGD PMID:14718166 NCBI chr11:34,101,248...34,121,371
Ensembl chr11:34,101,197...34,121,378
JBrowse link
G H3c1 H3 clustered histone 1 ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:43,616,206...43,616,735
Ensembl chr17:44,839,721...44,840,131
Ensembl chr17:44,839,721...44,840,131
Ensembl chr17:44,839,721...44,840,131
Ensembl chr17:44,839,721...44,840,131
JBrowse link
G Hat1 histone acetyltransferase 1 ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 3:58,022,395...58,070,067
Ensembl chr 3:58,022,238...58,070,068
JBrowse link
G Hist1h2ail1 histone cluster 1 H2a family member I like 1 ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:43,814,773...43,815,183
Ensembl chr17:43,814,773...43,815,183
Ensembl chr17:43,814,773...43,815,183
JBrowse link
G Hist1h3b histone cluster 1, H3b ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:44,760,023...44,764,058
Ensembl chr17:44,839,721...44,840,131
Ensembl chr17:44,839,721...44,840,131
Ensembl chr17:44,839,721...44,840,131
Ensembl chr17:44,839,721...44,840,131
JBrowse link
G Hist1h4b histone cluster 1 H4 family member B ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:44,522,144...44,526,587
Ensembl chr17:44,522,140...44,526,583
JBrowse link
G Hist1h4m histone cluster 1, H4m ISO (PMID:14718166) RGD PMID:14718166 Ensembl chr17:44,815,684...44,815,995 JBrowse link
G Hist2h4 histone cluster 2, H4 ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 2:198,411,955...198,412,350
Ensembl chr 2:198,411,955...198,412,350
JBrowse link
G Hist2h4a histone cluster 2 H4 family member A ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 4:170,800,539...170,800,979
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr 2:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
JBrowse link
G Ipo4 importin 4 ISO (PMID:14718166) RGD PMID:14718166 NCBI chr15:34,304,425...34,314,552
Ensembl chr15:34,304,425...34,314,345
JBrowse link
G LOC100912290 histone H4-like ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 4:170,092,457...170,117,607 JBrowse link
G LOC102548682 histone H4-like ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:43,616,218...43,673,659
Ensembl chr17:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr 2:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr 2:43,791,657...43,792,067
Ensembl chr 2:43,791,657...43,792,067
JBrowse link
G LOC102551184 histone H4-like ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:43,770,198...43,821,579 JBrowse link
G LOC684819 similar to H3 histone, family 2 isoform 2 ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:43,794,397...43,795,493 JBrowse link
G Nasp nuclear autoantigenic sperm protein ISO
ISS
IBA
(PMID:14718166)
(MGI:MGI:3694318|PMID:16728391)
GO_REF:0000024
PMID:21873635
RGD
UniProt
PMID:14718166, PMID:16728391, PMID:21873635 GO_REF:0000024, MGI:MGI:3694318, RGD:13792537 NCBI chr 5:135,446,485...135,472,113
Ensembl chr 5:135,446,962...135,472,116
JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 5:147,499,880...147,535,240
Ensembl chr 5:147,499,882...147,535,240
JBrowse link
G RGD1562378 histone H4 variant H4-v.1 ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 4:170,762,862...170,763,962
Ensembl chr 4:170,763,605...170,763,916
JBrowse link
DNA replication-independent nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asf1a anti-silencing function 1A histone chaperone ISO
IBA
(PMID:14718166)
PMID:21873635
RGD PMID:14718166, PMID:21873635 RGD:13792537 NCBI chr20:34,894,419...34,909,265
Ensembl chr20:34,894,419...34,909,265
JBrowse link
G Asf1b anti-silencing function 1B histone chaperone ISO
IBA
(PMID:14718166)
PMID:21873635
RGD PMID:14718166, PMID:21873635 RGD:13792537 NCBI chr19:25,077,918...25,092,491
Ensembl chr19:25,077,918...25,092,491
JBrowse link
G Atrx ATRX, chromatin remodeler IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:22391447)
Ensembl
UniProt
RGD
PMID:22391447 GO_REF:0000024, GO_REF:0000107 NCBI chr  X:76,820,110...76,979,155
Ensembl chr  X:76,692,970...76,708,878
Ensembl chr  X:76,692,970...76,708,878
JBrowse link
G Cabin1 calcineurin binding protein 1 IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(PMID:14718166)
GO_REF:0000002
Ensembl
RGD
InterPro
PMID:14718166, PMID:21873635 GO_REF:0000002, GO_REF:0000107, RGD:13792537 NCBI chr20:13,836,032...13,963,003
Ensembl chr20:13,836,030...13,963,003
JBrowse link
G H3f3a H3 histone family member 3A ISO (PMID:14718166) RGD PMID:14718166 NCBI chr13:99,091,246...99,102,828
Ensembl chr13:99,091,763...99,101,208
JBrowse link
G H3f3b H3 histone family member 3B ISO (PMID:14718166) RGD PMID:14718166 NCBI chr10:104,573,666...104,575,890
Ensembl chr10:104,573,664...104,575,890
JBrowse link
G Hat1 histone acetyltransferase 1 ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 3:58,022,395...58,070,067
Ensembl chr 3:58,022,238...58,070,068
JBrowse link
G Hira histone cell cycle regulator ISO
IBA
(PMID:14718166)
PMID:21873635
RGD PMID:14718166, PMID:21873635 RGD:13792537 NCBI chr11:86,168,196...86,276,430
Ensembl chr11:86,168,196...86,276,430
JBrowse link
G Hist1h4b histone cluster 1 H4 family member B ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:44,522,144...44,526,587
Ensembl chr17:44,522,140...44,526,583
JBrowse link
G Hist1h4m histone cluster 1, H4m ISO (PMID:14718166) RGD PMID:14718166 Ensembl chr17:44,815,684...44,815,995 JBrowse link
G Hist2h4 histone cluster 2, H4 ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 2:198,411,955...198,412,350
Ensembl chr 2:198,411,955...198,412,350
JBrowse link
G Hist2h4a histone cluster 2 H4 family member A ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 4:170,800,539...170,800,979
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr 2:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
JBrowse link
G Ipo4 importin 4 ISO (PMID:14718166) RGD PMID:14718166 NCBI chr15:34,304,425...34,314,552
Ensembl chr15:34,304,425...34,314,345
JBrowse link
G LOC100911837 protein HIRA-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:85,802,536...85,896,680
Ensembl chr11:85,802,605...85,895,613
JBrowse link
G LOC100912290 histone H4-like ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 4:170,092,457...170,117,607 JBrowse link
G LOC102548682 histone H4-like ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:43,616,218...43,673,659
Ensembl chr17:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr 2:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr 2:43,791,657...43,792,067
Ensembl chr 2:43,791,657...43,792,067
JBrowse link
G LOC102551184 histone H4-like ISO (PMID:14718166) RGD PMID:14718166 NCBI chr17:43,770,198...43,821,579 JBrowse link
G Nasp nuclear autoantigenic sperm protein ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 5:135,446,485...135,472,113
Ensembl chr 5:135,446,962...135,472,116
JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 5:147,499,880...147,535,240
Ensembl chr 5:147,499,882...147,535,240
JBrowse link
G RGD1562378 histone H4 variant H4-v.1 ISO (PMID:14718166) RGD PMID:14718166 NCBI chr 4:170,762,862...170,763,962
Ensembl chr 4:170,763,605...170,763,916
JBrowse link
G Ubn1 ubinuclein 1 ISO (PMID:14718166) RGD PMID:14718166 NCBI chr10:10,690,224...10,725,655
Ensembl chr10:10,690,224...10,725,655
JBrowse link
DNA replication-independent nucleosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Supt16h SPT16 homolog, facilitates chromatin remodeling subunit IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:28,574,841...28,611,959
Ensembl chr15:28,575,480...28,611,946
JBrowse link
heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07027368.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr17:26,772,096...26,772,732 JBrowse link
G Bahd1 bromo adjacent homology domain containing 1 ISO (PMID:19666599) RGD PMID:19666599 NCBI chr 3:110,708,790...110,732,038
Ensembl chr 3:110,723,481...110,732,060
JBrowse link
G Baz2a bromodomain adjacent to zinc finger domain, 2A ISO (MGI:MGI:3653583|PMID:16678107), (MGI:MGI:4462332|PMID:20168299) RGD PMID:16678107, PMID:20168299 MGI:MGI:3653583, MGI:MGI:4462332 NCBI chr 7:2,518,267...2,548,840
Ensembl chr 7:2,529,077...2,547,062
JBrowse link
G Ezh1 enhancer of zeste 1 polycomb repressive complex 2 subunit ISO (MGI:MGI:3820717|PMID:19026781) RGD PMID:19026781 MGI:MGI:3820717 NCBI chr10:89,104,026...89,139,978
Ensembl chr10:89,104,027...89,130,339
JBrowse link
G Hmga2 high mobility group AT-hook 2 ISO
ISS
(PMID:16901784)
GO_REF:0000024
RGD
UniProt
PMID:16901784 GO_REF:0000024 NCBI chr 7:65,159,944...65,275,408
Ensembl chr 7:65,159,944...65,275,408
JBrowse link
G LOC100362333 DNA-directed DNA polymerase epsilon 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:118,816,053...118,816,725
Ensembl chr 7:118,816,218...118,816,655
Ensembl chr 5:118,816,218...118,816,655
JBrowse link
G Pole3 DNA polymerase epsilon 3, accessory subunit IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:78,380,813...78,384,047
Ensembl chr 5:78,380,816...78,384,047
JBrowse link
G Sirt1 sirtuin 1 ISO (PMID:15469825) RGD PMID:15469825 NCBI chr20:26,831,971...26,851,587
Ensembl chr20:26,833,357...26,852,199
JBrowse link
heterochromatin assembly by small RNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fam172a family with sequence similarity 172, member A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:4,942,795...5,547,744
Ensembl chr 2:4,942,775...5,545,144
JBrowse link
G Nrde2 NRDE-2, necessary for RNA interference, domain containing IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:124,136,949...124,177,426
Ensembl chr 6:124,142,395...124,177,404
JBrowse link
G Znfx1 zinc finger, NFX1-type containing 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:163,787,101...163,847,671
Ensembl chr 3:163,787,101...163,847,671
JBrowse link
inactivation of X chromosome by heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smchd1 structural maintenance of chromosomes flexible hinge domain containing 1 ISO (MGI:MGI:5532809|PMID:23754746) RGD PMID:23754746 MGI:MGI:5532809 NCBI chr 9:119,675,750...119,818,620
Ensembl chr 9:119,676,628...119,818,310
JBrowse link
negative regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation-induced cytidine deaminase ISO (PMID:21496894) RGD PMID:21496894 NCBI chr 4:155,359,909...155,371,104
Ensembl chr 4:155,359,921...155,369,671
JBrowse link
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 ISO
ISS
(MGI:MGI:5285126|PMID:21496894)
GO_REF:0000024
RGD
UniProt
PMID:21496894 GO_REF:0000024, MGI:MGI:5285126 NCBI chr 4:155,386,367...155,414,034
Ensembl chr 4:155,386,711...155,401,480
JBrowse link
G Tet1 tet methylcytosine dioxygenase 1 ISO (PMID:21496894) RGD PMID:21496894 NCBI chr20:27,359,122...27,438,039
Ensembl chr20:27,366,213...27,437,427
JBrowse link
negative regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phf2 PHD finger protein 2 ISO (PMID:20129925) RGD PMID:20129925 NCBI chr17:16,240,458...16,274,626
Ensembl chr17:16,204,427...16,274,624
JBrowse link
G Phf8 PHD finger protein 8 ISO (PMID:20208542) RGD PMID:20208542 NCBI chr  X:21,063,487...21,168,750
Ensembl chr  X:21,063,562...21,168,750
JBrowse link
nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07012583.2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 2:198,418,691...198,424,443 JBrowse link
G AABR07031691.1 IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr18:27,205,850...27,206,777 JBrowse link
G AABR07031963.1 IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr18:40,853,988...40,873,685 JBrowse link
G AABR07040686.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr  X:107,584,653...107,585,312 JBrowse link
G AABR07058615.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 7:127,964,752...127,965,903 JBrowse link
G Anp32b acidic nuclear phosphoprotein 32 family member B IEA
ISO
GO_REF:0000107
(PMID:20538007)
Ensembl
RGD
PMID:20538007 GO_REF:0000107 NCBI chr 5:62,070,709...62,094,633
Ensembl chr 5:62,071,346...62,094,633
JBrowse link
G Asf1a anti-silencing function 1A histone chaperone ISO (PMID:11897662) RGD PMID:11897662 NCBI chr20:34,894,419...34,909,265
Ensembl chr20:34,894,419...34,909,265
JBrowse link
G Asf1b anti-silencing function 1B histone chaperone ISO (MGI:MGI:2675150|PMID:12842904) RGD PMID:12842904 MGI:MGI:2675150 NCBI chr19:25,077,918...25,092,491
Ensembl chr19:25,077,918...25,092,491
JBrowse link
G Atrx ATRX, chromatin remodeler ISO
ISS
(PMID:20651253)
GO_REF:0000024
RGD
UniProt
PMID:20651253 GO_REF:0000024 NCBI chr  X:76,820,110...76,979,155
Ensembl chr  X:76,692,970...76,708,878
Ensembl chr  X:76,692,970...76,708,878
JBrowse link
G Brd2 bromodomain containing 2 ISO
ISS
(PMID:18406326)
GO_REF:0000024
RGD
UniProt
PMID:18406326 GO_REF:0000024 NCBI chr20:3,910,555...3,921,074
Ensembl chr20:3,910,555...3,917,426
Ensembl chr20:3,910,555...3,917,426
JBrowse link
G Chaf1a chromatin assembly factor 1 subunit A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:11,000,869...11,027,631
Ensembl chr 9:11,001,129...11,027,506
JBrowse link
G Chaf1b chromatin assembly factor 1 subunit B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:34,101,248...34,121,371
Ensembl chr11:34,101,197...34,121,378
JBrowse link
G Daxx death-domain associated protein ISO
IBA
IEA
(MGI:MGI:5567907|PMID:20651253)
PMID:21873635
GO_REF:0000107
(PMID:20504901), (PMID:20651253)
RGD
Ensembl
PMID:20504901, PMID:20651253, PMID:21873635 GO_REF:0000107, MGI:MGI:5567907, RGD:13792537 NCBI chr20:5,480,103...5,485,962
Ensembl chr20:5,480,103...5,485,926
JBrowse link
G Grwd1 glutamate-rich WD repeat containing 1 IEA
ISO
ISS
GO_REF:0000107
(PMID:25990725), (PMID:27552915)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:25990725, PMID:27552915 GO_REF:0000024, GO_REF:0000107 NCBI chr 1:101,813,356...101,819,058
Ensembl chr 1:101,813,684...101,819,478
JBrowse link
G H1f0 H1 histone family, member 0 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:120,260,776...120,262,636 JBrowse link
G H1f1 H1.1 linker histone, cluster member IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:43,614,101...43,614,844
Ensembl chr17:43,614,101...43,614,844
JBrowse link
G H1f10 H1.10 linker histone IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:119,889,016...119,892,661
Ensembl chr 4:119,889,371...119,889,949
JBrowse link
G H1f2 H1.2 linker histone, cluster member IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:43,638,938...43,640,445
Ensembl chr17:43,639,749...43,640,387
JBrowse link
G H1f4 H1.4 linker histone, cluster member IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:43,734,461...43,735,120
Ensembl chr17:43,734,461...43,735,120
JBrowse link
G H1f5 H1.5 linker histone, cluster member IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:44,766,313...44,766,981
Ensembl chr17:44,766,313...44,766,981
JBrowse link
G H1f6 H1.6 linker histone, cluster member IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:43,675,190...43,675,934
Ensembl chr17:43,675,190...43,675,934
JBrowse link
G H1f8 H1.8 linker histone IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:147,844,658...147,849,779
Ensembl chr 4:147,844,658...147,849,779
JBrowse link
G H2afb3 H2A histone family, member B3 ISO (PMID:22795134) RGD PMID:22795134 NCBI chr  X:88,602,135...88,602,485
Ensembl chr  X:88,602,135...88,602,485
JBrowse link
G H2bc1 H2B clustered histone 1 ISO
IBA
ISS
(PMID:24699735)
(MGI:MGI:3702345|PMID:17261847), (MGI:MGI:5502464|PMID:23884607)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:17261847, PMID:23884607, PMID:24699735, PMID:21873635 GO_REF:0000024, MGI:MGI:3702345, MGI:MGI:5502464, RGD:13792537 NCBI chr17:43,423,111...43,423,580
Ensembl chr17:43,423,111...43,423,580
JBrowse link
G H2bc12 H2B clustered histone 12 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:44,527,421...44,527,801
Ensembl chr17:44,527,421...44,527,801
JBrowse link
G H2bc9 H2B clustered histone 9 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:44,519,815...44,520,269
Ensembl chr17:44,519,860...44,520,240
JBrowse link
G H2bu1 H2B.U histone 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:45,296,638...45,297,385
Ensembl chr10:45,296,638...45,297,385
JBrowse link
G H3c1 H3 clustered histone 1 ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr17:43,616,206...43,616,735
Ensembl chr17:44,839,721...44,840,131
Ensembl chr17:44,839,721...44,840,131
Ensembl chr17:44,839,721...44,840,131
Ensembl chr17:44,839,721...44,840,131
JBrowse link
G H3c13 H3 clustered histone 13 ISO (PMID:21636898), (PMID:25615412) RGD PMID:21636898, PMID:25615412 NCBI chr17:43,776,018...43,776,779
Ensembl chr17:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr 2:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr 2:43,791,657...43,792,067
Ensembl chr 2:43,791,657...43,792,067
JBrowse link
G H3f3a H3 histone family member 3A ISO (PMID:21636898), (PMID:25615412) RGD PMID:21636898, PMID:25615412 NCBI chr13:99,091,246...99,102,828
Ensembl chr13:99,091,763...99,101,208
JBrowse link
G H3f3b H3 histone family member 3B ISO (PMID:21636898), (PMID:25615412) RGD PMID:21636898, PMID:25615412 NCBI chr10:104,573,666...104,575,890
Ensembl chr10:104,573,664...104,575,890
JBrowse link
G H3f4 H3.4 histone ISO (PMID:20498094), (PMID:25615412) RGD PMID:20498094, PMID:25615412 NCBI chr10:45,304,696...45,305,106 JBrowse link
G H4f3 H1.3 linker histone, cluster member IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr17:43,797,711...43,798,450
Ensembl chr17:43,797,721...43,798,383
JBrowse link
G Hils1 histone linker H1 domain, spermatid-specific 1 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:82,775,691...82,776,487
Ensembl chr10:82,775,691...82,776,487
JBrowse link
G Hist1h2ail1 histone cluster 1 H2a family member I like 1 ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr17:43,814,773...43,815,183
Ensembl chr17:43,814,773...43,815,183
Ensembl chr17:43,814,773...43,815,183
JBrowse link
G Hist1h2ao histone cluster 1, H2ao IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:44,744,534...44,744,931
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr 2:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
JBrowse link
G Hist1h2bc histone cluster 1, H2bc IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:44,736,184...44,738,393
Ensembl chr17:44,737,950...44,738,330
Ensembl chr17:44,737,950...44,738,330
JBrowse link
G Hist1h2bd histone cluster 1 H2B family member D IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:44,833,924...44,834,305
Ensembl chr17:44,833,924...44,834,305
JBrowse link
G Hist1h2bg histone cluster 1, H2bg IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:43,817,316...43,817,717
Ensembl chr17:43,817,378...43,817,720
JBrowse link
G Hist1h2bl histone cluster 1 H2B family member l IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:44,748,445...44,748,910
Ensembl chr17:44,748,482...44,748,862
JBrowse link
G Hist1h2bo histone cluster 1 H2B family member o IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:44,756,557...44,758,170
Ensembl chr17:44,756,555...44,793,927
JBrowse link
G Hist1h2bq histone cluster 1 H2B family member Q IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:43,679,925...43,689,311
Ensembl chr17:43,679,925...43,689,311
JBrowse link
G Hist1h3b histone cluster 1, H3b ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr17:44,760,023...44,764,058
Ensembl chr17:44,839,721...44,840,131
Ensembl chr17:44,839,721...44,840,131
Ensembl chr17:44,839,721...44,840,131
Ensembl chr17:44,839,721...44,840,131
JBrowse link
G Hist1h4b histone cluster 1 H4 family member B ISO
IBA
(PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412)
PMID:21873635
RGD PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412, PMID:21873635 RGD:13792537 NCBI chr17:44,522,144...44,526,587
Ensembl chr17:44,522,140...44,526,583
JBrowse link
G Hist1h4m histone cluster 1, H4m IBA
ISO
PMID:21873635
(PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412)
RGD PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412, PMID:21873635 RGD:13792537 Ensembl chr17:44,815,684...44,815,995 JBrowse link
G Hist2h2be histone cluster 2 H2B family member E IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:198,360,837...198,363,399
Ensembl chr 2:198,360,998...198,361,378
JBrowse link
G Hist2h3c2 histone cluster 2 H3 family member C2 ISO (PMID:21636898), (PMID:25615412) RGD PMID:21636898, PMID:25615412 NCBI chr 2:198,390,024...198,418,075
Ensembl chr 2:198,417,619...198,418,029
JBrowse link
G Hist2h4 histone cluster 2, H4 ISO
IBA
(PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412)
PMID:21873635
RGD PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412, PMID:21873635 RGD:13792537 NCBI chr 2:198,411,955...198,412,350
Ensembl chr 2:198,411,955...198,412,350
JBrowse link
G Hist2h4a histone cluster 2 H4 family member A IBA
ISO
PMID:21873635
(PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412)
RGD PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412, PMID:21873635 RGD:13792537 NCBI chr 4:170,800,539...170,800,979
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr 2:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
JBrowse link
G Hist3h2ba histone cluster 3, H2ba IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:45,289,741...45,290,370
Ensembl chr10:45,289,741...45,290,370
JBrowse link
G Hmgb1 high mobility group box 1 ISO (PMID:2465778) RGD PMID:2465778 NCBI chr12:7,082,529...7,090,246
Ensembl chr16:37,500,017...37,502,237
JBrowse link
G Hmgb2 high mobility group box 2 ISO (PMID:2465778) RGD PMID:2465778 NCBI chr16:36,077,615...36,080,191
Ensembl chr16:36,077,617...36,080,191
Ensembl chr11:36,077,617...36,080,191
JBrowse link
G Hp1bp3 heterochromatin protein 1, binding protein 3 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:156,581,732...156,609,059
Ensembl chr 5:156,581,732...156,609,059
JBrowse link
G Kat6a lysine acetyltransferase 6A IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:73,942,669...74,020,750
Ensembl chr16:73,943,455...74,023,005
JBrowse link
G Kat6b lysine acetyltransferase 6B IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr15:2,811,933...2,966,833
Ensembl chr15:2,813,537...2,966,576
JBrowse link
G LOC100364835 histone cluster 1, H2bd-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:43,764,654...43,765,101
Ensembl chr17:44,737,950...44,738,330
Ensembl chr17:44,737,950...44,738,330
JBrowse link
G LOC100365043 histone cluster 1, H2bd-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:43,808,617...43,817,817
Ensembl chr17:44,737,950...44,738,330
Ensembl chr17:44,737,950...44,738,330
Ensembl chr17:44,737,950...44,738,330
JBrowse link
G LOC100910200 histone H2B type 1-C/E/G-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:44,792,982...44,793,896
Ensembl chr17:44,737,950...44,738,330
Ensembl chr17:44,737,950...44,738,330
JBrowse link
G LOC100912290 histone H4-like ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr 4:170,092,457...170,117,607 JBrowse link
G LOC100912489 histone H4-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:170,144,871...170,145,311
Ensembl chr 4:170,144,951...170,145,262
JBrowse link
G LOC100912564 histone H4-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:170,182,634...170,183,074
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr 2:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr17:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
Ensembl chr 4:43,770,250...43,770,561
JBrowse link
G LOC102548682 histone H4-like ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr17:43,616,218...43,673,659
Ensembl chr17:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr 2:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr17:43,791,657...43,792,067
Ensembl chr 2:43,791,657...43,792,067
Ensembl chr 2:43,791,657...43,792,067
JBrowse link
G LOC102549061 histone H2B type 1-N-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:43,627,872...43,628,518
Ensembl chr17:43,627,930...43,628,310
JBrowse link
G LOC102551184 histone H4-like ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr17:43,770,198...43,821,579 JBrowse link
G LOC108348112 bromodomain-containing protein 2 ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr20:5,262,742...5,269,337
Ensembl chr20:5,262,120...5,269,337
JBrowse link
G LOC499544 LRRGT00154 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:61,991,742...62,018,698
Ensembl chr 2:61,991,742...62,018,698
JBrowse link
G LOC499843 LRRGT00091 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:90,720,921...90,751,055
Ensembl chr 3:90,720,921...90,751,055
JBrowse link
G LOC500948 LRRGT00073 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:16,279,392...16,280,134
Ensembl chr 8:16,279,392...16,347,545
JBrowse link
G LOC684444 similar to HIStone family member (his-41) IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:29,247,748...29,248,259
Ensembl chr 2:29,247,803...29,248,174
JBrowse link
G LOC684797 similar to Histone H2B 291B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:43,778,481...43,778,990
Ensembl chr17:44,737,950...44,738,330
Ensembl chr17:44,737,950...44,738,330
JBrowse link
G LOC684819 similar to H3 histone, family 2 isoform 2 ISO (PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412) RGD PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412 NCBI chr17:43,794,397...43,795,493 JBrowse link
G LOC690126 hypothetical protein LOC690126 ISO (PMID:21636898), (PMID:25615412) RGD PMID:21636898, PMID:25615412 NCBI chr 2:198,379,864...198,381,026
Ensembl chr 2:198,380,426...198,380,836
JBrowse link
G Macroh2a1 macroH2A.1 histone IEA GO_REF:0000002
GO_REF:0000104
InterPro
UniProt
GO_REF:0000002, GO_REF:0000104 NCBI chr17:9,282,109...9,344,698
Ensembl chr17:9,282,675...9,344,678
JBrowse link
G Macroh2a2 macroH2A.2 histone IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr20:31,352,924...31,402,483
Ensembl chr20:31,352,960...31,402,483
JBrowse link
G Mcm2 minichromosome maintenance complex component 2 ISO (MGI:MGI:2156014|PMID:10531422) RGD PMID:10531422 MGI:MGI:2156014 NCBI chr 4:120,825,699...120,840,221
Ensembl chr 4:120,825,699...120,840,111
JBrowse link
G Naa60 N(alpha)-acetyltransferase 60, NatF catalytic subunit ISO
ISS
(PMID:21981917)
GO_REF:0000024
RGD
UniProt
PMID:21981917 GO_REF:0000024 NCBI chr10:11,881,635...11,902,139
Ensembl chr10:11,881,739...11,901,785
JBrowse link
G Nap1l1 nucleosome assembly protein 1-like 1 IEA
IBA
GO_REF:0000002
PMID:21873635
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr 7:54,213,305...54,237,880
Ensembl chr 7:54,213,319...54,236,625
JBrowse link
G Nap1l3 nucleosome assembly protein 1-like 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:95,059,334...95,062,132
Ensembl chr  X:95,059,337...95,062,132
JBrowse link
G Nap1l4 nucleosome assembly protein 1-like 4 IEA
IBA
ISS
ISO
GO_REF:0000107
PMID:21873635
GO_REF:0000024
(MGI:MGI:5897488|PMID:28366643)
(PMID:9325046)
Ensembl
UniProt
RGD
PMID:9325046, PMID:28366643, PMID:21873635 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5897488, RGD:13792537 NCBI chr 1:216,715,352...216,751,742
Ensembl chr 1:216,715,363...216,750,844
JBrowse link
G Nap1l5 nucleosome assembly protein 1-like 5 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:89,149,314...89,152,511
Ensembl chr 4:89,149,317...89,151,184
JBrowse link
G Nasp nuclear autoantigenic sperm protein ISO (PMID:25615412) RGD PMID:25615412 NCBI chr 5:135,446,485...135,472,113
Ensembl chr 5:135,446,962...135,472,116
JBrowse link
G Npm1 nucleophosmin 1 ISO (PMID:11602260) RGD PMID:11602260 NCBI chr10:18,080,949...18,091,062
Ensembl chr10:18,080,950...18,090,950
JBrowse link
G Padi4 peptidyl arginine deiminase 4 ISO
ISS
(MGI:MGI:5545819|PMID:24463520)
GO_REF:0000024
RGD
UniProt
PMID:24463520 GO_REF:0000024, MGI:MGI:5545819 NCBI chr 5:159,260,675...159,293,906
Ensembl chr 5:159,260,675...159,293,673
JBrowse link
G Pkn3 protein kinase N3 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:8,628,033...8,656,464
Ensembl chr 3:8,628,033...8,659,117
JBrowse link
G RGD1560617 hypothetical gene supported by NM_053561; AF062594 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:127,964,727...127,965,921 JBrowse link
G RGD1562378 histone H4 variant H4-v.1 ISO
IBA
(PMID:20498094), (PMID:21636898), (PMID:24699735), (PMID:25615412)
PMID:21873635
RGD PMID:20498094, PMID:21636898, PMID:24699735, PMID:25615412, PMID:21873635 RGD:13792537 NCBI chr 4:170,762,862...170,763,962
Ensembl chr 4:170,763,605...170,763,916
JBrowse link
G RGD1563307 similar to Set beta isoform IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:89,645,570...89,646,774
Ensembl chr 1:89,645,769...89,646,590
JBrowse link
G Rsf1 remodeling and spacing factor 1 ISO (PMID:12972596) RGD PMID:12972596 NCBI chr 1:162,549,222...162,671,962
Ensembl chr 1:162,549,420...162,662,170
JBrowse link
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein ISO (PMID:24526689) RGD PMID:24526689 NCBI chr12:48,628,198...48,656,096
Ensembl chr12:48,628,278...48,656,096
JBrowse link
G Set SET nuclear proto-oncogene IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr19:58,420,635...58,422,153
Ensembl chr19:58,419,961...58,421,504
JBrowse link
G Shprh SNF2 histone linker PHD RING helicase IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:5,240,139...5,313,064
Ensembl chr 1:5,240,180...5,313,054
JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 ISO (PMID:12972596) RGD PMID:12972596 NCBI chr19:30,936,703...30,969,454
Ensembl chr19:30,936,703...30,969,454
JBrowse link
G Smyd3 SET and MYND domain containing 3 ISO (MGI:MGI:5500979|PMID:23752591) RGD PMID:23752591 MGI:MGI:5500979 NCBI chr13:97,330,120...97,807,813 JBrowse link
G Sox9 SRY-box transcription factor 9 ISO
ISS
(PMID:20484372)
GO_REF:0000024
RGD
UniProt
PMID:20484372 GO_REF:0000024 NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379
JBrowse link
G Spty2d1 SPT2 chromatin protein domain containing 1 ISO
IBA
(PMID:23378026)
PMID:21873635
RGD PMID:23378026, PMID:21873635 RGD:13792537 NCBI chr 1:103,115,280...103,129,438
Ensembl chr 1:103,115,216...103,128,743
JBrowse link
G Tspy1 testis specific protein, Y-linked 1 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  Y:151,941...156,587
Ensembl chr  Y:151,937...155,263
JBrowse link
G Tspy26 testis specific protein, Y-linked 26 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:148,704,896...148,706,972
Ensembl chr 3:148,704,900...148,706,972
JBrowse link
G Tspyl1 TSPY-like 1 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr20:41,083,317...41,085,876
Ensembl chr20:41,083,317...41,085,875
JBrowse link
G Tspyl2 TSPY-like 2 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:22,408,118...22,413,886
Ensembl chr  X:22,408,118...22,413,741
JBrowse link
G Tspyl4 TSPY-like 4 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr20:41,100,071...41,102,067
Ensembl chr20:41,100,071...41,102,056
JBrowse link
G Tspyl5 TSPY-like 5 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:72,323,764...72,328,228
Ensembl chr 7:72,326,896...72,328,128
JBrowse link
nucleosome disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid1a AT-rich interaction domain 1A ISO (PMID:8895581) RGD PMID:8895581 NCBI chr 5:151,904,687...151,977,973
Ensembl chr 5:151,904,684...151,977,636
JBrowse link
G Arid2 AT-rich interaction domain 2 ISO (PMID:8895581) RGD PMID:8895581 NCBI chr 7:137,680,564...137,798,329
Ensembl chr 7:137,680,530...137,795,655
JBrowse link
G Grwd1 glutamate-rich WD repeat containing 1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:27552915)
Ensembl
UniProt
RGD
PMID:27552915 GO_REF:0000024, GO_REF:0000107 NCBI chr 1:101,813,356...101,819,058
Ensembl chr 1:101,813,684...101,819,478
JBrowse link
G H2bc1 H2B clustered histone 1 ISO
ISS
(MGI:MGI:5502464|PMID:23884607)
GO_REF:0000024
RGD
UniProt
PMID:23884607 GO_REF:0000024, MGI:MGI:5502464 NCBI chr17:43,423,111...43,423,580
Ensembl chr17:43,423,111...43,423,580
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 IDA
IEA
ISO
GO_REF:0000107
(PMID:8895581)
Ensembl
RGD
PMID:8895581, PMID:9001244 GO_REF:0000107, RGD:634124 NCBI chr 8:22,648,323...22,739,468
Ensembl chr 8:22,648,323...22,739,468
JBrowse link
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 ISO (PMID:8895581) RGD PMID:8895581 NCBI chr20:13,679,955...13,702,821
Ensembl chr20:13,680,716...13,704,931
JBrowse link
G Smarcc1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 ISO (PMID:8895581) RGD PMID:8895581 NCBI chr 8:118,206,678...118,326,264
Ensembl chr 8:118,206,698...118,325,537
JBrowse link
G Smarcc2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 ISO (PMID:8895581) RGD PMID:8895581 NCBI chr 7:2,875,898...2,905,463
Ensembl chr 7:2,875,909...2,904,453
JBrowse link
G Smarcd1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 ISO
IBA
(PMID:8895581)
PMID:21873635
RGD PMID:8895581, PMID:21873635 RGD:13792537 NCBI chr 7:141,355,623...141,366,725
Ensembl chr 7:141,355,994...141,366,732
JBrowse link
G Smarcd2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 ISO
IBA
(PMID:8895581)
PMID:21873635
RGD PMID:8895581, PMID:21873635 RGD:13792537 NCBI chr10:94,451,866...94,460,732
Ensembl chr10:94,451,866...94,460,732
JBrowse link
G Smarcd3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 ISO
IBA
(PMID:8895581)
PMID:21873635
RGD PMID:8895581, PMID:21873635 RGD:13792537 NCBI chr 4:7,076,710...7,108,334
Ensembl chr 4:7,076,759...7,108,328
JBrowse link
G Smarce1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 ISO (PMID:8895581) RGD PMID:8895581 NCBI chr10:87,116,827...87,138,890
Ensembl chr10:87,116,827...87,137,965
JBrowse link
G Tnp1 transition protein 1 ISO
ISS
(PMID:10781074)
GO_REF:0000024
RGD
UniProt
PMID:10781074 GO_REF:0000024 NCBI chr 9:80,294,837...80,295,446
Ensembl chr 9:80,294,840...80,295,446
JBrowse link
nucleosome positioning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07028349.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr17:66,238,947...66,241,440 JBrowse link
G Ctcf CCCTC-binding factor ISO
IEA
(PMID:18654629)
GO_REF:0000107
RGD
Ensembl
PMID:18654629 GO_REF:0000107 NCBI chr19:37,600,151...37,649,674
Ensembl chr19:37,600,148...37,649,673
JBrowse link
G H1f0 H1 histone family, member 0 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:120,260,776...120,262,636 JBrowse link
G H1f1 H1.1 linker histone, cluster member IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:43,614,101...43,614,844
Ensembl chr17:43,614,101...43,614,844
JBrowse link
G H1f10 H1.10 linker histone IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:119,889,016...119,892,661
Ensembl chr 4:119,889,371...119,889,949
JBrowse link
G H1f2 H1.2 linker histone, cluster member ISO
IBA
MGI:MGI:2665852 (MGI:MGI:2664444|PMID:12808097)
PMID:21873635
RGD PMID:12808097, PMID:21873635 MGI:MGI:2664444, RGD:13792537 NCBI chr17:43,638,938...43,640,445
Ensembl chr17:43,639,749...43,640,387
JBrowse link
G H1f4 H1.4 linker histone, cluster member ISO
IBA
MGI:MGI:2665857 (MGI:MGI:2664444|PMID:12808097)
PMID:21873635
RGD PMID:12808097, PMID:21873635 MGI:MGI:2664444, RGD:13792537 NCBI chr17:43,734,461...43,735,120
Ensembl chr17:43,734,461...43,735,120
JBrowse link
G H1f5 H1.5 linker histone, cluster member IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:44,766,313...44,766,981
Ensembl chr17:44,766,313...44,766,981
JBrowse link
G H1f6 H1.6 linker histone, cluster member IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:43,675,190...43,675,934
Ensembl chr17:43,675,190...43,675,934
JBrowse link
G H1f8 H1.8 linker histone ISO
IBA
ISS
(MGI:MGI:5559660|PMID:22868987)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:22868987, PMID:21873635 GO_REF:0000024, MGI:MGI:5559660, RGD:13792537 NCBI chr 4:147,844,658...147,849,779
Ensembl chr 4:147,844,658...147,849,779
JBrowse link
G H4f3 H1.3 linker histone, cluster member ISO
IBA
MGI:MGI:2666743 (MGI:MGI:2664444|PMID:12808097)
PMID:21873635
RGD PMID:12808097, PMID:21873635 MGI:MGI:2664444, RGD:13792537 NCBI chr17:43,797,711...43,798,450
Ensembl chr17:43,797,721...43,798,383
JBrowse link
G Hils1 histone linker H1 domain, spermatid-specific 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:82,775,691...82,776,487
Ensembl chr10:82,775,691...82,776,487
JBrowse link
G Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component ISO (PMID:22046413) RGD PMID:22046413 NCBI chr 1:85,362,421...85,367,999
Ensembl chr 1:85,362,268...85,368,031
JBrowse link
G Prdm9 PR/SET domain 9 ISO
ISS
(PMID:29072575)
GO_REF:0000024
RGD
UniProt
PMID:29072575 GO_REF:0000024 NCBI chr 1:57,533,602...57,555,155
Ensembl chr 1:57,533,577...57,555,048
JBrowse link
G Rsf1 remodeling and spacing factor 1 ISO (PMID:9836642) RGD PMID:9836642 NCBI chr 1:162,549,222...162,671,962
Ensembl chr 1:162,549,420...162,662,170
JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 ISO
IBA
(PMID:9836642)
PMID:21873635
RGD PMID:9836642, PMID:21873635 RGD:13792537 NCBI chr19:30,936,703...30,969,454
Ensembl chr19:30,936,703...30,969,454
JBrowse link
pericentric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cenpv centromere protein V ISO
IBA
(PMID:18772885)
PMID:21873635
RGD PMID:18772885, PMID:21873635 RGD:13792537 NCBI chr10:48,846,513...48,861,893
Ensembl chr10:48,846,728...48,860,902
JBrowse link
G Dicer1 dicer 1 ribonuclease III ISO MGI:MGI:3589287 (MGI:MGI:3528782|PMID:15713842) RGD PMID:15713842 MGI:MGI:3528782 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G H3f3a H3 histone family member 3A ISO MGI:MGI:1101768 (MGI:MGI:5694896|PMID:26159997) RGD PMID:26159997 MGI:MGI:5694896 NCBI chr13:99,091,246...99,102,828
Ensembl chr13:99,091,763...99,101,208
JBrowse link
G H3f3b H3 histone family member 3B ISO MGI:MGI:1097686 (MGI:MGI:5694896|PMID:26159997) RGD PMID:26159997 MGI:MGI:5694896 NCBI chr10:104,573,666...104,575,890
Ensembl chr10:104,573,664...104,575,890
JBrowse link
G Hells helicase, lymphoid specific ISO
IBA
(MGI:MGI:3041983|PMID:14612388)
PMID:21873635
RGD PMID:14612388, PMID:21873635 MGI:MGI:3041983, RGD:13792537 NCBI chr 1:257,901,856...257,953,889
Ensembl chr 1:257,766,691...257,949,183
Ensembl chr 1:257,766,691...257,949,183
JBrowse link
G LOC100911660 lymphocyte-specific helicase-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:257,614,688...257,660,184
Ensembl chr 1:257,766,691...257,949,183
Ensembl chr 1:257,766,691...257,949,183
JBrowse link
positive regulation of chromatin assembly or disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tal1 TAL bHLH transcription factor 1, erythroid differentiation factor ISO (PMID:20855495) RGD PMID:20855495 NCBI chr 5:133,864,401...133,878,604
Ensembl chr 5:133,864,798...133,878,830
JBrowse link
positive regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf7ip activating transcription factor 7 interacting protein ISO (PMID:27732843) RGD PMID:27732843 NCBI chr 4:170,476,998...170,563,063
Ensembl chr 4:170,518,673...170,559,532
JBrowse link
G Dnmt1 DNA methyltransferase 1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:24623306)
Ensembl
UniProt
RGD
PMID:24623306 GO_REF:0000024, GO_REF:0000107 NCBI chr 8:21,922,515...21,968,495
Ensembl chr 8:21,922,515...21,968,495
JBrowse link
G Morc2 MORC family CW-type zinc finger 2 ISO (PMID:28581500), (PMID:29211708)
(MGI:MGI:6271895|PMID:29728365)
RGD PMID:28581500, PMID:29211708, PMID:29728365 MGI:MGI:6271895 NCBI chr14:83,889,138...83,930,263
Ensembl chr14:83,889,089...83,930,522
JBrowse link
G Mphosph8 M-phase phosphoprotein 8 ISS
ISO
GO_REF:0000024
(PMID:28581500), (PMID:29211708)
UniProt
RGD
PMID:28581500, PMID:29211708 GO_REF:0000024 NCBI chr15:36,918,843...36,946,712
Ensembl chr15:36,918,843...36,946,708
JBrowse link
G Pphln1 periphilin 1 ISO (PMID:28581500) RGD PMID:28581500 NCBI chr 7:134,602,109...134,693,807
Ensembl chr 7:134,603,121...134,695,864
JBrowse link
G Resf1 retroelement silencing factor 1 ISO (MGI:MGI:6271895|PMID:29728365) RGD PMID:29728365 MGI:MGI:6271895 NCBI chr 4:183,879,177...183,905,807
Ensembl chr 4:183,896,303...183,905,297
JBrowse link
G Setdb1 SET domain bifurcated histone lysine methyltransferase 1 ISO
IBA
(PMID:24623306), (PMID:27732843)
PMID:21873635
(MGI:MGI:5440670|PMID:20164836), (MGI:MGI:6271895|PMID:29728365)
RGD PMID:20164836, PMID:24623306, PMID:27732843, PMID:29728365, PMID:21873635 MGI:MGI:5440670, MGI:MGI:6271895, RGD:13792537 NCBI chr 2:196,495,867...196,527,412
Ensembl chr 2:196,495,867...196,527,127
JBrowse link
G Setdb2 SET domain bifurcated histone lysine methyltransferase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:38,699,135...39,745,035
Ensembl chr15:39,712,861...39,742,103
Ensembl chr15:39,712,861...39,742,103
JBrowse link
G Tasor transcription activation suppressor ISO (PMID:28581500), (PMID:29211708) RGD PMID:28581500, PMID:29211708 NCBI chr16:3,050,506...3,108,168
Ensembl chr16:3,051,449...3,105,531
JBrowse link
G Trim28 tripartite motif-containing 28 ISO
ISS
(PMID:24623306)
(MGI:MGI:5440670|PMID:20164836)
GO_REF:0000024
RGD
UniProt
PMID:20164836, PMID:24623306 GO_REF:0000024, MGI:MGI:5440670 NCBI chr 1:65,544,369...65,551,043
Ensembl chr 1:65,544,373...65,551,043
JBrowse link
positive regulation of heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tpr translocated promoter region, nuclear basket protein ISO
ISS
(PMID:20407419)
GO_REF:0000024
RGD
UniProt
PMID:20407419 GO_REF:0000024 NCBI chr13:67,611,685...67,672,833
Ensembl chr13:67,611,708...67,672,827
JBrowse link
positive regulation of subtelomeric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sirt6 sirtuin 6 ISO (PMID:21847107) RGD PMID:21847107 NCBI chr 7:10,937,622...10,943,048
Ensembl chr 7:10,937,599...10,943,063
JBrowse link
rDNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baz2a bromodomain adjacent to zinc finger domain, 2A ISO (MGI:MGI:3587127|PMID:16085498), (MGI:MGI:3653583|PMID:16678107), (MGI:MGI:3852313|PMID:12198165), (MGI:MGI:3852588|PMID:19578370), (MGI:MGI:4462332|PMID:20168299) RGD PMID:12198165, PMID:16085498, PMID:16678107, PMID:19578370, PMID:20168299 MGI:MGI:3587127, MGI:MGI:3653583, MGI:MGI:3852313, MGI:MGI:3852588, MGI:MGI:4462332 NCBI chr 7:2,518,267...2,548,840
Ensembl chr 7:2,529,077...2,547,062
JBrowse link
G Bend3 BEN domain containing 3 ISO
IBA
(PMID:26100909)
PMID:21873635
RGD PMID:26100909, PMID:21873635 RGD:13792537 NCBI chr20:48,248,193...48,270,905
Ensembl chr20:48,248,455...48,268,147
JBrowse link
G Rrp8 ribosomal RNA processing 8 ISO
IBA
ISS
(PMID:18485871)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:18485871, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 1:170,574,670...170,578,693
Ensembl chr 1:170,574,349...170,579,616
JBrowse link
G Sirt1 sirtuin 1 ISO
IEA
(PMID:18485871)
GO_REF:0000107
RGD
Ensembl
PMID:18485871 GO_REF:0000107 NCBI chr20:26,831,971...26,851,587
Ensembl chr20:26,833,357...26,852,199
JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 ISO (MGI:MGI:3587127|PMID:16085498) RGD PMID:16085498 MGI:MGI:3587127 NCBI chr19:30,936,703...30,969,454
Ensembl chr19:30,936,703...30,969,454
JBrowse link
G Suv39h1 suppressor of variegation 3-9 homolog 1 ISO (PMID:18485871) RGD PMID:18485871 NCBI chr  X:146,532,002...146,533,538 JBrowse link
G Suv39h1l1 suppressor of variegation 3-9 homolog 1 (Drosophila)-like 1 IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr  X:15,171,280...15,185,191
Ensembl chr  X:15,171,499...15,185,191
JBrowse link
G Ubtf upstream binding transcription factor ISO (MGI:MGI:3836497|PMID:19103806) RGD PMID:19103806 MGI:MGI:3836497 NCBI chr10:90,250,275...90,265,772
Ensembl chr10:90,250,275...90,265,017
JBrowse link
regulation of chromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Parp10 poly (ADP-ribose) polymerase family, member 10 ISO (PMID:15674325) RGD PMID:15674325 NCBI chr 7:117,291,592...117,300,878
Ensembl chr 7:117,291,877...117,300,662
JBrowse link
G Spty2d1 SPT2 chromatin protein domain containing 1 ISO
IBA
(PMID:26109053)
PMID:21873635
RGD PMID:26109053, PMID:21873635 RGD:13792537 NCBI chr 1:103,115,280...103,129,438
Ensembl chr 1:103,115,216...103,128,743
JBrowse link
regulation of chromatin assembly or disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC103690017 serine/threonine-protein kinase tousled-like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:57,318,512...57,411,623
Ensembl chr 3:57,318,795...57,389,901
JBrowse link
G Tlk1 tousled-like kinase 1 ISO
IBA
(PMID:12660173)
PMID:21873635
RGD PMID:12660173, PMID:21873635 RGD:13792537 NCBI chr 3:57,012,738...57,376,336
Ensembl chr 3:57,013,025...57,119,001
JBrowse link
G Tlk2 tousled-like kinase 2 ISO
IBA
(PMID:12660173)
PMID:21873635
RGD PMID:12660173, PMID:21873635 RGD:13792537 NCBI chr10:93,410,181...93,507,277
Ensembl chr10:93,415,399...93,507,277
JBrowse link
regulation of chromatin disassembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Map1s microtubule-associated protein 1S ISO
IEA
(PMID:12762840)
GO_REF:0000107
RGD
Ensembl
PMID:12762840 GO_REF:0000107 NCBI chr16:20,268,663...20,278,850
Ensembl chr16:20,267,581...20,278,814
JBrowse link
G Padi2 peptidyl arginine deiminase 2 IEA
ISO
GO_REF:0000107
(PMID:22853951)
Ensembl
RGD
PMID:22853951 GO_REF:0000107 NCBI chr 5:159,428,479...159,471,113
Ensembl chr 5:159,428,515...159,471,144
JBrowse link
regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pou5f1 POU class 5 homeobox 1 ISO (PMID:19736317) RGD PMID:19736317 NCBI chr20:3,747,231...3,751,994
Ensembl chr20:3,747,221...3,751,994
JBrowse link
regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Macroh2a1 macroH2A.1 histone NOT ISO (PMID:24071584) RGD PMID:24071584 NCBI chr17:9,282,109...9,344,698
Ensembl chr17:9,282,675...9,344,678
JBrowse link
G Naa40 N(alpha)-acetyltransferase 40, NatD catalytic subunit IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:222,478,021...222,495,382
Ensembl chr 1:222,478,021...222,495,382
JBrowse link
senescence-associated heterochromatin focus assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdkn2a cyclin-dependent kinase inhibitor 2A ISO (PMID:16901784) RGD PMID:16901784 NCBI chr 5:107,823,323...107,832,405
Ensembl chr 5:107,823,330...107,841,175
JBrowse link
G Hmga1 high mobility group AT-hook 1 ISO
ISS
(PMID:16901784)
GO_REF:0000024
RGD
UniProt
PMID:16901784 GO_REF:0000024 NCBI chr20:7,132,501...7,140,155
Ensembl chr20:7,136,007...7,138,980
JBrowse link
G Hmga2 high mobility group AT-hook 2 ISO
ISS
(PMID:16901784)
GO_REF:0000024
RGD
UniProt
PMID:16901784 GO_REF:0000024 NCBI chr 7:65,159,944...65,275,408
Ensembl chr 7:65,159,944...65,275,408
JBrowse link
subtelomeric heterochromatin assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G H3f3a H3 histone family member 3A ISO MGI:MGI:1101768 (MGI:MGI:5694896|PMID:26159997) RGD PMID:26159997 MGI:MGI:5694896 NCBI chr13:99,091,246...99,102,828
Ensembl chr13:99,091,763...99,101,208
JBrowse link
G H3f3b H3 histone family member 3B ISO MGI:MGI:1097686 (MGI:MGI:5694896|PMID:26159997) RGD PMID:26159997 MGI:MGI:5694896 NCBI chr10:104,573,666...104,575,890
Ensembl chr10:104,573,664...104,575,890
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20027
    cellular process 18798
      cellular component organization or biogenesis 6789
        cellular component organization 6534
          chromatin organization 848
            chromatin assembly or disassembly 189
              DNA replication-dependent nucleosome organization + 20
              DNA replication-independent nucleosome organization + 27
              chromatin assembly + 169
              chromatin disassembly + 15
              negative regulation of chromatin assembly or disassembly + 5
              positive regulation of chromatin assembly or disassembly + 13
              regulation of chromatin assembly or disassembly + 28
Path 2
Term Annotations click to browse term
  biological_process 20027
    cellular process 18798
      cellular component organization or biogenesis 6789
        cellular component organization 6534
          organelle organization 4101
            chromosome organization 1251
              chromatin organization 848
                chromatin assembly or disassembly 189
                  DNA replication-dependent nucleosome organization + 20
                  DNA replication-independent nucleosome organization + 27
                  chromatin assembly + 169
                  chromatin disassembly + 15
                  negative regulation of chromatin assembly or disassembly + 5
                  positive regulation of chromatin assembly or disassembly + 13
                  regulation of chromatin assembly or disassembly + 28
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.