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ONTOLOGY REPORT - ANNOTATIONS


Term:chromatin remodeling
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Accession:GO:0006338 term browser browse the term
Definition:Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation.
Synonyms:exact_synonym: chromatin modeling;   chromatin modelling;   chromatin remodelling


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chromatin remodeling term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACTL6A actin like 6A JBrowse link 13 117,598,415 117,627,311 RGD:9068941
G ACTL6B actin like 6B JBrowse link 3 8,554,322 8,568,774 RGD:9068941
G ACTR6 actin related protein 6 JBrowse link 5 83,909,415 83,929,076 RGD:14298760
G ACTR8 actin related protein 8 JBrowse link 13 35,951,601 35,988,501 RGD:14298760
G ARID1A AT-rich interaction domain 1A JBrowse link 6 84,049,729 84,124,302 RGD:14298760
G ARID1B AT-rich interaction domain 1B JBrowse link 1 9,791,627 10,227,381 RGD:14298760
G ATRX ATRX chromatin remodeler JBrowse link X 61,584,028 61,872,341 RGD:14298760
G BAZ1A bromodomain adjacent to zinc finger domain 1A JBrowse link 7 64,969,626 65,069,969 RGD:14298760
G BAZ1B bromodomain adjacent to zinc finger domain 1B JBrowse link 3 10,761,461 10,843,918 RGD:14298760
G BAZ2A bromodomain adjacent to zinc finger domain 2A JBrowse link 5 21,932,527 21,983,033 RGD:9068941
G BPTF bromodomain PHD finger transcription factor JBrowse link 12 14,112,943 14,254,810 RGD:9068941
G BRD4 bromodomain containing 4 JBrowse link 2 62,250,958 62,345,851 RGD:9068941
G BRDT bromodomain testis associated JBrowse link 4 125,004,897 125,062,208 RGD:14298760
G CHD1 chromodomain helicase DNA binding protein 1 JBrowse link 2 105,113,149 105,205,303 RGD:14298760
G CHD1L chromodomain helicase DNA binding protein 1 like JBrowse link 4 100,264,963 100,425,728 RGD:14298760
G CHD7 chromodomain helicase DNA binding protein 7 JBrowse link 4 72,572,455 72,754,443 RGD:14298760
G CHDH choline dehydrogenase JBrowse link 13 35,910,688 35,950,438 RGD:14298760
G DAXX death domain associated protein JBrowse link 7 29,676,854 29,681,145 RGD:14298760
G DR1 down-regulator of transcription 1 JBrowse link 4 123,815,088 123,835,875 RGD:14298760
G EZH1 enhancer of zeste 1 polycomb repressive complex 2 subunit JBrowse link 12 20,107,744 20,139,764 RGD:9068941
G FOXA1 forkhead box A1 JBrowse link 7 62,471,233 62,479,638 RGD:14298760
G GATA3 GATA binding protein 3 JBrowse link 10 63,367,684 63,397,977 RGD:14298760
G GATAD1 GATA zinc finger domain containing 1 JBrowse link 9 72,360,321 72,370,064 RGD:14298760
G HCFC2 host cell factor C2 JBrowse link 5 80,366,826 80,409,798 RGD:14298760
G HDAC4 histone deacetylase 4 JBrowse link 15 138,378,237 138,657,266 RGD:9068941
G HMGB1 high mobility group box 1 JBrowse link 11 7,195,556 7,321,071 RGD:14298760
G HMGB2 high mobility group box 2 JBrowse link 14 16,709,966 16,712,288 RGD:14298760
G HMGB3 high mobility group box 3 JBrowse link X 122,591,413 122,599,496 RGD:14298760
G HMGB4 high mobility group box 4 JBrowse link 6 90,133,911 90,136,413 RGD:14298760
G HNF1A HNF1 homeobox A JBrowse link 14 40,868,819 40,888,322 RGD:14298760
G INO80 INO80 complex ATPase subunit JBrowse link 1 130,201,705 130,341,627 RGD:14298760
G INO80C INO80 complex subunit C JBrowse link 6 119,262,488 119,285,852 RGD:14298760
G INO80E INO80 complex subunit E JBrowse link 3 18,202,092 18,212,187 RGD:14298760
G KAT2B lysine acetyltransferase 2B JBrowse link 13 6,985,151 7,099,771 RGD:14298760
G KDM4A lysine demethylase 4A JBrowse link 6 167,597,954 167,642,381 RGD:14298760
G KDM4B lysine demethylase 4B JBrowse link 2 73,746,379 73,889,881 RGD:14298760
G KDM4C lysine demethylase 4C JBrowse link 1 215,071,335 215,507,778 RGD:14298760
G KDM5A lysine demethylase 5A JBrowse link 5 67,628,791 67,716,143 RGD:14298760
G KDM5B lysine demethylase 5B JBrowse link 10 24,739,115 24,831,537 RGD:14298760
G KDM5C lysine demethylase 5C JBrowse link X 45,968,812 46,003,215 RGD:14298760
G KDM6A lysine demethylase 6A JBrowse link X 39,953,764 40,154,197 RGD:14298760
G KDM6B lysine demethylase 6B JBrowse link 12 53,087,072 53,108,949 RGD:9068941
G KLF1 Kruppel like factor 1 JBrowse link 2 66,144,767 66,148,500 RGD:9068941
G LOC100514356 lysine-specific demethylase 4D JBrowse link 9 27,102,104 27,106,143 RGD:14298760
G LOC100738242 high mobility group protein B3 pseudogene JBrowse link 8 137,595,910 137,596,549 RGD:14298760
G LOC110257883 lysine-specific demethylase 5D-like JBrowse link Y 39,582,253 39,631,823 RGD:14298760
G MEN1 menin 1 JBrowse link 2 7,358,130 7,364,952 RGD:9068941
G MORC2 MORC family CW-type zinc finger 2 JBrowse link 14 47,755,264 47,800,432 RGD:14298760
G MPND MPN domain containing JBrowse link 2 74,445,660 74,455,928 RGD:14298760
G MYB MYB proto-oncogene, transcription factor JBrowse link 1 28,819,500 28,856,222 RGD:9068941
G MYC MYC proto-oncogene, bHLH transcription factor JBrowse link 4 12,455,141 12,460,360 RGD:14298760
G MYSM1 Myb like, SWIRM and MPN domains 1 JBrowse link 6 153,755,209 153,798,412 RGD:14298760
G NPM1 nucleophosmin 1 JBrowse link 16 52,767,263 52,781,862 RGD:14298760
G NPM2 nucleophosmin/nucleoplasmin 2 JBrowse link 14 6,288,422 6,303,750 RGD:14298760
G NPM3 nucleophosmin/nucleoplasmin 3 JBrowse link 14 112,819,390 112,822,244 RGD:14298760
G NR3C1 nuclear receptor subfamily 3 group C member 1 JBrowse link 2 144,822,937 144,956,451 RGD:9068941
G NUDT5 nudix hydrolase 5 JBrowse link 10 59,765,444 59,787,773 RGD:9068941
G PABPC1L poly(A) binding protein cytoplasmic 1 like JBrowse link 17 47,321,259 47,351,905 RGD:14298760
G PADI4 peptidyl arginine deiminase 4 JBrowse link 6 75,935,909 75,966,275 RGD:14298760
G PAK1 p21 (RAC1) activated kinase 1 JBrowse link 9 11,830,095 11,973,074 RGD:14298760
G PAX7 paired box 7 JBrowse link 6 77,160,827 77,268,626 RGD:9068941
G PBRM1 polybromo 1 JBrowse link 13 34,689,718 34,821,117 RGD:14298760
G PIH1D1 PIH1 domain containing 1 JBrowse link 6 54,524,172 54,529,700 RGD:14298760
G RBBP4 RB binding protein 4, chromatin remodeling factor JBrowse link 6 88,987,092 89,006,815 RGD:9068941
G RERE arginine-glutamic acid dipeptide repeats JBrowse link 6 68,954,766 69,258,855 RGD:9068941
G RSF1 remodeling and spacing factor 1 JBrowse link 9 12,121,824 12,278,120 RGD:14298760
G RUVBL1 RuvB like AAA ATPase 1 JBrowse link 13 72,196,219 72,246,514 RGD:14298760
G RUVBL2 RuvB like AAA ATPase 2 JBrowse link 6 54,250,494 54,263,492 RGD:14298760
G SATB1 SATB homeobox 1 JBrowse link 13 5,315,985 5,410,686 RGD:14298760
G SATB2 SATB homeobox 2 JBrowse link 15 102,962,635 103,172,224 RGD:14298760
G SCMH1 Scm polycomb group protein homolog 1 JBrowse link 6 169,999,763 170,189,357 RGD:14298760
G SMARCA1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 JBrowse link X 106,039,961 106,116,156 RGD:9068941
G SMARCA2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 JBrowse link 1 219,624,773 219,815,438 RGD:14298760
RGD:9068941
G SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 JBrowse link 2 69,717,175 69,810,301 RGD:9068941
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 JBrowse link 8 84,184,572 84,224,943 RGD:9068941
G SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 JBrowse link 14 49,874,981 49,906,043 RGD:14298760
G SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 JBrowse link 13 30,409,979 30,576,270 RGD:9068941
G SMARCC2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2 JBrowse link 5 21,563,426 21,586,790 RGD:9068941
G SMARCD1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 JBrowse link 5 15,992,348 16,005,778 RGD:14298760
G SMARCD2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 JBrowse link 12 15,091,926 15,101,899 RGD:9068941
G SMARCD3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 JBrowse link 18 5,958,466 5,989,120 RGD:14298760
G SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 JBrowse link 12 21,784,410 21,807,170 RGD:9068941
G SMYD1 SET and MYND domain containing 1 JBrowse link 3 57,866,078 57,918,576 RGD:14298760
G SOX9 SRY-box transcription factor 9 JBrowse link 12 8,642,154 8,647,315 RGD:14298760
G SRCAP Snf2 related CREBBP activator protein JBrowse link 3 17,662,374 17,702,862 RGD:14298760
G SUV39H2 suppressor of variegation 3-9 homolog 2 JBrowse link 10 46,874,606 46,900,058 RGD:14298760
G TADA2A transcriptional adaptor 2A JBrowse link 12 38,875,156 38,928,011 RGD:14298760
G TADA2B transcriptional adaptor 2B JBrowse link 8 3,815,056 3,828,113 RGD:14298760
G TFAM transcription factor A, mitochondrial JBrowse link 14 92,261,713 92,279,731 RGD:14298760
G TNP1 transition protein 1 JBrowse link 15 119,037,492 119,038,099 RGD:14298760
G TOP1 DNA topoisomerase I JBrowse link 17 43,710,270 43,799,700 RGD:14298760
G TP63 tumor protein p63 JBrowse link 13 127,115,990 127,347,082 RGD:14298760
G TTF1 transcription termination factor 1 JBrowse link 1 272,180,488 272,212,504 RGD:9068941
G ZBTB1 zinc finger and BTB domain containing 1 JBrowse link 7 88,575,563 88,602,726 RGD:14298760
G ZBTB7A zinc finger and BTB domain containing 7A JBrowse link 2 74,678,293 74,699,347 RGD:14298760
ATP-dependent chromatin remodeling term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACTL6A actin like 6A JBrowse link 13 117,598,415 117,627,311 RGD:14298760
G ACTL6B actin like 6B JBrowse link 3 8,554,322 8,568,774 RGD:14298760
G ACTR5 actin related protein 5 JBrowse link 17 41,702,273 41,724,398 RGD:14298760
G ARID1A AT-rich interaction domain 1A JBrowse link 6 84,049,729 84,124,302 RGD:14298760
G ARID1B AT-rich interaction domain 1B JBrowse link 1 9,791,627 10,227,381 RGD:14298760
G CECR2 CECR2 histone acetyl-lysine reader JBrowse link 5 69,621,871 69,747,730 RGD:14298760
G CHD3 chromodomain helicase DNA binding protein 3 JBrowse link 12 53,135,767 53,163,244 RGD:14298760
G CHD8 chromodomain helicase DNA binding protein 8 JBrowse link 7 77,719,476 77,780,148 RGD:14298760
G ERCC6 ERCC excision repair 6, chromatin remodeling factor JBrowse link 14 89,998,125 90,075,911 RGD:14298760
G INO80 INO80 complex ATPase subunit JBrowse link 1 130,201,705 130,341,627 RGD:14298760
G INO80B INO80 complex subunit B JBrowse link 3 68,585,038 68,588,321 RGD:14298760
G PBRM1 polybromo 1 JBrowse link 13 34,689,718 34,821,117 RGD:14298760
G SMARCA1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 JBrowse link X 106,039,961 106,116,156 RGD:14298760
G SMARCA2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 JBrowse link 1 219,624,773 219,815,438 RGD:14298760
G SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 JBrowse link 2 69,717,175 69,810,301 RGD:14298760
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 JBrowse link 8 84,184,572 84,224,943 RGD:14298760
G SMARCAD1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 JBrowse link 8 125,410,221 125,488,471 RGD:14298760
G SMARCC1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 JBrowse link 13 30,409,979 30,576,270 RGD:14298760
G SMARCC2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2 JBrowse link 5 21,563,426 21,586,790 RGD:14298760
G SMARCD2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2 JBrowse link 12 15,091,926 15,101,899 RGD:14298760
G SMARCE1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 JBrowse link 12 21,784,410 21,807,170 RGD:14298760
G SRCAP Snf2 related CREBBP activator protein JBrowse link 3 17,662,374 17,702,862 RGD:14298760
CENP-A containing nucleosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CENPP centromere protein P JBrowse link 3 42,053,074 42,309,745 RGD:14298760
G HJURP Holliday junction recognition protein JBrowse link 15 134,106,561 134,123,163 RGD:14298760
G MIS18A MIS18 kinetochore protein A JBrowse link 13 195,912,044 195,928,309 RGD:14298760
G NASP nuclear autoantigenic sperm protein JBrowse link 6 165,773,964 165,804,978 RGD:14298760
G OIP5 Opa interacting protein 5 JBrowse link 1 130,036,478 130,054,058 RGD:14298760
DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DNMT3A DNA methyltransferase 3 alpha JBrowse link 3 113,501,972 113,609,148 RGD:14298760
G DNMT3B DNA methyltransferase 3 beta JBrowse link 17 36,345,715 36,386,076 RGD:9068941
G HDAC1 histone deacetylase 1 JBrowse link 6 88,749,611 88,785,220 RGD:14298760
G HELLS helicase, lymphoid specific JBrowse link 14 105,923,727 105,967,003 RGD:14298760
G MBD2 methyl-CpG binding domain protein 2 JBrowse link 1 103,683,077 103,768,372 RGD:14298760
G MBD3 methyl-CpG binding domain protein 3 JBrowse link 2 76,913,880 76,923,435 RGD:14298760
G SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 JBrowse link 2 69,717,175 69,810,301 RGD:9068941
heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BAHD1 bromo adjacent homology domain containing 1 JBrowse link 1 130,849,835 130,874,735 RGD:14298760
G BAZ2A bromodomain adjacent to zinc finger domain 2A JBrowse link 5 21,932,527 21,983,033 RGD:9068941
G EZH1 enhancer of zeste 1 polycomb repressive complex 2 subunit JBrowse link 12 20,107,744 20,139,764 RGD:9068941
G HMGA2 high mobility group AT-hook 2 JBrowse link 5 30,188,521 30,329,635 RGD:9068941
G POLE3 DNA polymerase epsilon 3, accessory subunit JBrowse link 1 254,033,378 254,036,224 RGD:14298760
G SIRT1 sirtuin 1 JBrowse link 14 71,091,167 71,126,351 RGD:9068941
heterochromatin assembly by small RNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FAM172A family with sequence similarity 172 member A JBrowse link 2 100,477,770 100,893,594 RGD:14298760
G NRDE2 NRDE-2, necessary for RNA interference, domain containing JBrowse link 7 112,039,949 112,090,632 RGD:14298760
G TRMT10C tRNA methyltransferase 10C, mitochondrial RNase P subunit JBrowse link 13 157,495,075 157,522,349 RGD:14298760
G ZNFX1 zinc finger NFX1-type containing 1 JBrowse link 17 50,925,789 50,958,722 RGD:14298760
histone exchange term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACTR6 actin related protein 6 JBrowse link 5 83,909,415 83,929,076 RGD:14298760
G ANP32E acidic nuclear phosphoprotein 32 family member E JBrowse link 4 98,849,114 98,869,095 RGD:9068941
G DMAP1 DNA methyltransferase 1 associated protein 1 JBrowse link 6 167,083,053 167,091,654 RGD:14298760
G LOC100152601 acidic leucine-rich nuclear phosphoprotein 32 family member E pseudogene JBrowse link X 61,053,747 61,055,034 RGD:14298760
G NASP nuclear autoantigenic sperm protein JBrowse link 6 165,773,964 165,804,978 RGD:9068941
G PTMA prothymosin alpha JBrowse link 15 132,353,763 132,361,442 RGD:9068941
G RNF8 ring finger protein 8 JBrowse link 7 32,931,786 32,969,536 RGD:9068941
G SPTY2D1 SPT2 chromatin protein domain containing 1 JBrowse link 2 40,581,816 40,604,040 RGD:14298760
G SRCAP Snf2 related CREBBP activator protein JBrowse link 3 17,662,374 17,702,862 RGD:14298760
G VPS72 vacuolar protein sorting 72 homolog JBrowse link 4 98,062,261 98,074,074 RGD:14298760
G ZNHIT1 zinc finger HIT-type containing 1 JBrowse link 3 8,918,873 8,926,595 RGD:14298760
inactivation of X chromosome by heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SMCHD1 structural maintenance of chromosomes flexible hinge domain containing 1 JBrowse link 6 103,809,732 103,986,057 RGD:14298760
negative regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AICDA activation induced cytidine deaminase JBrowse link 5 62,777,236 62,787,342 RGD:9068941
G APOBEC1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 JBrowse link 5 62,811,819 62,820,532 RGD:14298760
G TET1 tet methylcytosine dioxygenase 1 JBrowse link 14 71,675,671 71,812,732 RGD:14298760
negative regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PHF2 PHD finger protein 2 JBrowse link 3 42,988,607 43,078,811 RGD:14298760
G PHF8 PHD finger protein 8 JBrowse link X 46,648,164 46,761,192 RGD:14298760
nucleosome mobilization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BPTF bromodomain PHD finger transcription factor JBrowse link 12 14,112,943 14,254,810 RGD:14298760
G INO80 INO80 complex ATPase subunit JBrowse link 1 130,201,705 130,341,627 RGD:14298760
G POLE3 DNA polymerase epsilon 3, accessory subunit JBrowse link 1 254,033,378 254,036,224 RGD:14298760
pericentric heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CENPV centromere protein V JBrowse link 12 59,200,041 59,215,941 RGD:14298760
G DICER1 dicer 1, ribonuclease III JBrowse link 7 116,361,630 116,436,471 RGD:9068941
G H3-3A H3 histone, family 3A JBrowse link 10 13,939,938 13,947,976 RGD:14298760
G HELLS helicase, lymphoid specific JBrowse link 14 105,923,727 105,967,003 RGD:14298760
G LOC100521680 histone H3.3 JBrowse link 12 5,632,326 5,634,977 RGD:14298760
G ZNFX1 zinc finger NFX1-type containing 1 JBrowse link 17 50,925,789 50,958,722 RGD:14298760
positive regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATF7IP activating transcription factor 7 interacting protein JBrowse link 5 58,022,734 58,149,980 RGD:14298760
G DNMT1 DNA methyltransferase 1 JBrowse link 2 68,981,564 69,040,364 RGD:14298760
G MORC2 MORC family CW-type zinc finger 2 JBrowse link 14 47,755,264 47,800,432 RGD:14298760
G MPHOSPH8 M-phase phosphoprotein 8 JBrowse link 11 447,019 480,121 RGD:14298760
G PPHLN1 periphilin 1 JBrowse link 5 73,556,205 73,696,403 RGD:14298760
G RESF1 retroelement silencing factor 1 JBrowse link 5 42,263,560 42,299,596 RGD:9068941
G SETDB1 SET domain bifurcated histone lysine methyltransferase 1 JBrowse link 4 98,259,801 98,293,238 RGD:14298760
G TASOR transcription activation suppressor JBrowse link 13 38,491,048 38,557,256 RGD:14298760
G TRIM28 tripartite motif containing 28 JBrowse link 6 63,094,382 63,101,532 RGD:14298760
G ZNF304 zinc finger protein 304 JBrowse link 6 61,740,677 61,790,290 RGD:9068941
positive regulation of heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TPR translocated promoter region, nuclear basket protein JBrowse link 9 127,481,678 127,540,393 RGD:14298760
positive regulation of subtelomeric heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SIRT6 sirtuin 6 JBrowse link 2 74,568,539 74,577,774 RGD:14298760
rDNA heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BAZ2A bromodomain adjacent to zinc finger domain 2A JBrowse link 5 21,932,527 21,983,033 RGD:9068941
G BEND3 BEN domain containing 3 JBrowse link 1 73,184,745 73,224,663 RGD:14298760
G RRP8 ribosomal RNA processing 8 JBrowse link 9 3,152,162 3,169,380 RGD:14298760
G SIRT1 sirtuin 1 JBrowse link 14 71,091,167 71,126,351 RGD:14298760
G SMARCA5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 JBrowse link 8 84,184,572 84,224,943 RGD:14298760
G SUV39H1 suppressor of variegation 3-9 homolog 1 JBrowse link X 42,797,309 42,811,457 RGD:14298760
G UBTF upstream binding transcription factor JBrowse link 12 18,989,833 19,006,145 RGD:9068941
regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G POU5F1 POU class 5 homeobox 1 JBrowse link 7 23,564,654 23,570,691 RGD:9068941
regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G H2AFY H2A histone family, member Y JBrowse link 2 137,535,128 137,623,886 RGD:9068941
G NAA40 N-alpha-acetyltransferase 40, NatD catalytic subunit JBrowse link 2 8,115,288 8,130,075 RGD:14298760
senescence-associated heterochromatin focus assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HMGA1 high mobility group AT-hook 1 JBrowse link 7 30,320,090 30,329,413 RGD:9068941
G HMGA2 high mobility group AT-hook 2 JBrowse link 5 30,188,521 30,329,635 RGD:9068941
G P14ARF p14ARF protein JBrowse link 1 200,774,496 200,799,149 RGD:14298760
spermatogenesis, exchange of chromosomal proteins term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CHD5 chromodomain helicase DNA binding protein 5 JBrowse link 6 67,017,410 67,086,685 RGD:9068941
G FSHR follicle stimulating hormone receptor JBrowse link 3 91,607,236 91,775,255 RGD:14298760
G LOC100152135 histone H2B type 1-A-like JBrowse link 7 20,465,043 20,466,398 RGD:14298760
G PIWIL1 piwi like RNA-mediated gene silencing 1 JBrowse link 14 24,729,346 24,760,056 RGD:14298760
G PSME4 proteasome activator subunit 4 JBrowse link 3 87,231,510 87,337,709 RGD:14298760
G RNF8 ring finger protein 8 JBrowse link 7 32,931,786 32,969,536 RGD:9068941
G SYCP3 synaptonemal complex protein 3 JBrowse link 5 82,492,744 82,501,068 RGD:14298760
G TNP1 transition protein 1 JBrowse link 15 119,037,492 119,038,099 RGD:14298760
G TNP2 transition protein 2 JBrowse link 3 31,868,517 31,871,530 RGD:14298760
subtelomeric heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G H3-3A H3 histone, family 3A JBrowse link 10 13,939,938 13,947,976 RGD:14298760
G LOC100521680 histone H3.3 JBrowse link 12 5,632,326 5,634,977 RGD:14298760

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16411
    cellular process 15624
      cellular component organization or biogenesis 5902
        cellular component organization 5740
          chromatin organization 687
            chromatin remodeling 166
              ATP-dependent chromatin remodeling + 44
              chromatin remodeling at centromere + 11
              chromatin remodeling in response to cation stress 0
              chromatin remodeling involved in meiosis I 0
              heterochromatin assembly + 49
              nucleosome mobilization 3
Path 2
Term Annotations click to browse term
  biological_process 16411
    cellular process 15624
      cellular component organization or biogenesis 5902
        cellular component organization 5740
          organelle organization 3604
            chromosome organization 1067
              chromatin organization 687
                chromatin remodeling 166
                  ATP-dependent chromatin remodeling + 44
                  chromatin remodeling at centromere + 11
                  chromatin remodeling in response to cation stress 0
                  chromatin remodeling involved in meiosis I 0
                  heterochromatin assembly + 49
                  nucleosome mobilization 3
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.