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ONTOLOGY REPORT - ANNOTATIONS


Term:DNA-templated transcription, termination
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Accession:GO:0006353 term browser browse the term
Definition:The cellular process that completes DNA-templated transcription; the formation of phosphodiester bonds ceases, the RNA-DNA hybrid dissociates, and RNA polymerase releases the DNA.
Synonyms:exact_synonym: termination of DNA-dependent transcription
 broad_synonym: transcriptional complex disassembly
 related_synonym: transcription termination factor activity;   transcription termination, DNA-dependent


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DNA-templated transcription, termination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mterf1 mitochondrial transcription termination factor 1 ISO
ISS
(PMID:20550934)
GO_REF:0000024
RGD
UniProt
PMID:20550934 GO_REF:0000024 NCBI chr 4:27,365,310...27,372,374
Ensembl chr 4:27,365,376...27,372,372
JBrowse link
G Polr2a RNA polymerase II subunit A ISO (PMID:26700805) RGD PMID:26700805 NCBI chr10:56,339,277...56,364,888
Ensembl chr10:56,339,284...56,365,084
JBrowse link
G Prmt5 protein arginine methyltransferase 5 ISO (PMID:26700805) RGD PMID:26700805 NCBI chr15:33,156,508...33,165,893
Ensembl chr15:33,156,492...33,165,895
JBrowse link
G Setx senataxin ISO (PMID:26700805) RGD PMID:26700805 NCBI chr 3:7,680,430...7,731,815
Ensembl chr 3:7,686,503...7,730,539
JBrowse link
G Smn1 survival of motor neuron 1, telomeric ISO
ISS
(PMID:26700805)
GO_REF:0000024
RGD
UniProt
PMID:26700805 GO_REF:0000024 NCBI chr 2:30,360,101...30,371,147
Ensembl chr 2:30,360,100...30,371,147
JBrowse link
negative regulation of DNA-templated transcription, termination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Per2 period circadian regulator 2 ISO (MGI:MGI:5430667|PMID:22767893) RGD PMID:22767893 MGI:MGI:5430667 NCBI chr 9:98,555,154...98,597,362
Ensembl chr 9:98,555,169...98,597,359
JBrowse link
negative regulation of termination of RNA polymerase II transcription, poly(A)-coupled term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Scaf4 SR-related CTD-associated factor 4 ISS
ISO
GO_REF:0000024
(PMID:31104839)
UniProt
RGD
PMID:31104839 GO_REF:0000024 NCBI chr11:30,371,713...30,428,073
Ensembl chr11:30,371,713...30,428,073
JBrowse link
G Scaf8 SR-related CTD-associated factor 8 ISS
ISO
GO_REF:0000024
(PMID:31104839)
UniProt
RGD
PMID:31104839 GO_REF:0000024 NCBI chr 1:44,017,801...44,120,619
Ensembl chr 1:44,019,059...44,120,615
JBrowse link
positive regulation of DNA-templated transcription, termination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Setx senataxin ISO (PMID:19515850) RGD PMID:19515850 NCBI chr 3:7,680,430...7,731,815
Ensembl chr 3:7,686,503...7,730,539
JBrowse link
positive regulation of termination of RNA polymerase II transcription, poly(A)-coupled term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Setx senataxin ISO (PMID:21700224) RGD PMID:21700224 NCBI chr 3:7,680,430...7,731,815
Ensembl chr 3:7,686,503...7,730,539
JBrowse link
regulation of termination of RNA polymerase I transcription term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zmpste24 zinc metallopeptidase STE24 ISO MGI:MGI:2180033 (MGI:MGI:5607719|PMID:20961378) RGD PMID:20961378 MGI:MGI:5607719 NCBI chr 5:139,982,404...140,015,541
Ensembl chr 5:139,983,680...140,015,541
JBrowse link
termination of mitochondrial transcription term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mterf1 mitochondrial transcription termination factor 1 ISO
IBA
ISS
(PMID:20550934)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:20550934, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 4:27,365,310...27,372,374
Ensembl chr 4:27,365,376...27,372,372
JBrowse link
G Mterf2 mitochondrial transcription termination factor 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:24,638,208...24,649,599
Ensembl chr 7:24,638,208...24,648,255
JBrowse link
termination of RNA polymerase I transcription term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cavin1 caveolae associated protein 1 ISO
IBA
ISS
IEA
(MGI:MGI:1266983|PMID:9582279)
PMID:21873635
(PMID:9582279)
GO_REF:0000107
RGD
Ensembl
PMID:9582279, PMID:21873635, PMID:9582279 GO_REF:0000107, MGI:MGI:1266983, RGD:13792537, RGD:8554461 NCBI chr10:88,862,513...88,874,495
Ensembl chr10:88,860,733...88,874,528
JBrowse link
G Lipe lipase E, hormone sensitive type ISS PMID:9582279 UniProt PMID:9582279 RGD:8554461 NCBI chr 1:82,248,031...82,266,727
Ensembl chr 1:82,248,046...82,266,727
JBrowse link
G Polr1h RNA polymerase I subunit H IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:2,088,518...2,092,436
Ensembl chr20:2,088,533...2,092,436
JBrowse link
G Ttf1 transcription termination factor 1 ISO
IBA
(MGI:MGI:72087|PMID:7720715)
PMID:21873635
RGD PMID:7720715, PMID:21873635 MGI:MGI:72087, RGD:13792537 NCBI chr 3:7,635,630...7,660,153
Ensembl chr 3:7,635,933...7,660,673
JBrowse link
termination of RNA polymerase II transcription term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Maz MYC associated zinc finger protein ISO (PMID:1502157) RGD PMID:1502157 NCBI chr 1:198,456,699...198,460,126
Ensembl chr 1:198,456,699...198,460,126
JBrowse link
G Med18 mediator complex subunit 18 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:150,649,136...150,654,123
Ensembl chr 5:150,649,829...150,653,172
JBrowse link
G Pcf11 PCF11 cleavage and polyadenylation factor subunit IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:157,463,014...157,494,134
Ensembl chr 1:157,468,626...157,494,008
JBrowse link
G Scaf8 SR-related CTD-associated factor 8 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:44,017,801...44,120,619
Ensembl chr 1:44,019,059...44,120,615
JBrowse link
G Setx senataxin ISO
IBA
(MGI:MGI:5430667|PMID:22767893)
PMID:21873635
RGD PMID:22767893, PMID:21873635 MGI:MGI:5430667, RGD:13792537 NCBI chr 3:7,680,430...7,731,815
Ensembl chr 3:7,686,503...7,730,539
JBrowse link
G Ssu72 SSU72 homolog, RNA polymerase II CTD phosphatase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:173,152,964...173,182,720
Ensembl chr 5:173,152,964...173,182,719
JBrowse link
termination of RNA polymerase III transcription term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Polr3k RNA polymerase III subunit K IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:177,374,812...177,379,009
Ensembl chr 3:177,374,812...177,379,008
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20015
    metabolic process 12259
      organic substance metabolic process 11639
        macromolecule metabolic process 10084
          gene expression 6295
            transcription, DNA-templated 3420
              DNA-templated transcription, termination 19
                negative regulation of DNA-templated transcription, termination + 3
                positive regulation of DNA-templated transcription, termination + 1
                regulation of DNA-templated transcription, termination + 5
                termination of RNA polymerase I transcription + 5
                termination of RNA polymerase II transcription + 7
                termination of RNA polymerase III transcription 1
                termination of mitochondrial transcription 2
                transcription termination from bacterial-type RNA polymerase promoter 0
                transcription ternary complex disassembly 0
Path 2
Term Annotations click to browse term
  biological_process 20015
    cellular process 18788
      cellular metabolic process 11067
        heterocycle metabolic process 5634
          nucleobase-containing compound metabolic process 5483
            nucleic acid metabolic process 4980
              RNA metabolic process 4470
                RNA biosynthetic process 3479
                  nucleic acid-templated transcription 3465
                    transcription, DNA-templated 3420
                      DNA-templated transcription, termination 19
                        negative regulation of DNA-templated transcription, termination + 3
                        positive regulation of DNA-templated transcription, termination + 1
                        regulation of DNA-templated transcription, termination + 5
                        termination of RNA polymerase I transcription + 5
                        termination of RNA polymerase II transcription + 7
                        termination of RNA polymerase III transcription 1
                        termination of mitochondrial transcription 2
                        transcription termination from bacterial-type RNA polymerase promoter 0
                        transcription ternary complex disassembly 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.