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ONTOLOGY REPORT - ANNOTATIONS


Term:rRNA processing
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Accession:GO:0006364 term browser browse the term
Definition:Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
Synonyms:narrow_synonym: 35S primary transcript processing
 alt_id: GO:0006365


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rRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bop1 BOP1 ribosomal biogenesis factor JBrowse link 7 117,514,529 117,538,342 RGD:1624291
G Bysl bystin-like JBrowse link 9 15,393,461 15,403,212 RGD:13792537
G Cdkn2a cyclin-dependent kinase inhibitor 2A JBrowse link 5 107,823,323 107,832,405 RGD:1600115
G Ddx10 DEAD-box helicase 10 JBrowse link 8 57,667,472 57,830,504 RGD:13792537
G Ddx21 DExD-box helicase 21 JBrowse link 20 32,213,147 32,232,632 RGD:1600115
G Ddx27 DEAD-box helicase 27 JBrowse link 3 163,767,236 163,786,408 RGD:1624291
G Ddx47 DEAD-box helicase 47 JBrowse link 4 168,775,134 168,787,594 RGD:1624291
RGD:13792537
G Ddx49 DEAD-box helicase 49 JBrowse link 16 20,873,585 20,881,312 RGD:13792537
G Ddx52 DExD-box helicase 52 JBrowse link 10 71,253,667 71,276,397 RGD:704356
G Ddx54 DEAD-box helicase 54 JBrowse link 12 41,469,642 41,484,887 RGD:13792537
G Ebna1bp2 EBNA1 binding protein 2 JBrowse link 5 137,458,692 137,463,255 RGD:13792537
G Eif4a3 eukaryotic translation initiation factor 4A3 JBrowse link 10 108,415,201 108,425,195 RGD:1600115
G Esf1 ESF1 nucleolar pre-rRNA processing protein homolog JBrowse link 3 133,178,591 133,232,358 RGD:13792537
G Exosc3 exosome component 3 JBrowse link 5 60,866,498 60,871,734 RGD:1624291
G Gar1 GAR1 ribonucleoprotein JBrowse link 2 235,250,453 235,258,464 RGD:1600115
G Gemin4 gem (nuclear organelle) associated protein 4 JBrowse link 10 64,364,808 64,375,885 RGD:1600115
G Imp3 IMP U3 small nucleolar ribonucleoprotein 3 JBrowse link 8 61,607,021 61,607,909 RGD:1624291
RGD:13792537
G Imp4 IMP U3 small nucleolar ribonucleoprotein 4 JBrowse link 9 37,769,959 37,775,097 RGD:13792537
G Krr1 KRR1, small subunit processome component homolog JBrowse link 7 54,756,043 54,767,477 RGD:1600115
G LOC100362830 ribosomal protein S7-like JBrowse link 5 169,021,517 169,022,178 RGD:13792537
G LOC108348080 probable rRNA-processing protein EBP2 JBrowse link 5 137,670,134 137,674,730 RGD:13792537
G Lyar Ly1 antibody reactive JBrowse link 14 77,308,211 77,321,931 RGD:1600115
RGD:13792537
RGD:1624291
G Mphosph10 M-phase phosphoprotein 10 JBrowse link 1 125,212,869 125,229,060 RGD:1600115
G Mrto4 MRT4 homolog, ribosome maturation factor JBrowse link 5 157,814,142 157,820,889 RGD:13792537
G Mterf4 mitochondrial transcription termination factor 4 JBrowse link 9 100,440,482 100,445,158 RGD:1600115
G Mtrex Mtr4 exosome RNA helicase JBrowse link 2 44,726,716 44,787,013 RGD:1624291
G Naf1 nuclear assembly factor 1 ribonucleoprotein JBrowse link 16 24,582,000 24,612,773 RGD:1600115
G Nol6 nucleolar protein 6 JBrowse link 5 57,444,448 57,473,803 RGD:13792537
G Nol8 nucleolar protein 8 JBrowse link 17 14,565,794 14,589,154 RGD:1624291
G Nop53 NOP53 ribosome biogenesis factor JBrowse link 1 77,836,522 77,843,991 RGD:13792537
G Npm3 nucleophosmin/nucleoplasmin, 3 JBrowse link 1 265,504,105 265,506,080 RGD:1624291
G Nvl nuclear VCP-like JBrowse link 13 99,410,026 99,468,783 RGD:1624291
G Pa2g4 proliferation-associated 2G4 JBrowse link 7 2,979,587 2,987,055 RGD:1600115
G Pes1 pescadillo ribosomal biogenesis factor 1 JBrowse link 14 84,211,600 84,227,980 RGD:1624291
G Pih1d1 PIH1 domain containing 1 JBrowse link 1 101,151,240 101,156,806 RGD:13792537
G Pih1d2 PIH1 domain containing 2 JBrowse link 8 55,050,284 55,060,289 RGD:13792537
G Pin4 peptidylprolyl cis/trans isomerase, NIMA-interacting 4 JBrowse link X 72,004,413 72,011,667 RGD:1624291
G Pop4 POP4 homolog, ribonuclease P/MRP subunit JBrowse link 1 94,661,127 94,669,461 RGD:13792537
G Pop5 POP5 homolog, ribonuclease P/MRP subunit JBrowse link 12 47,138,346 47,143,152 RGD:13792537
G Rbfa ribosome binding factor A JBrowse link 18 76,704,223 76,714,387 RGD:1600115
G Rexo4 REX4 homolog, 3'-5' exonuclease JBrowse link 3 5,500,578 5,510,908 RGD:1600115
G Rnasel ribonuclease L JBrowse link 13 71,188,712 71,202,636 RGD:2291995
G Rpf1 ribosome production factor 1 homolog JBrowse link 2 252,368,316 252,382,838 RGD:13792537
G Rpl11 ribosomal protein L11 JBrowse link 5 154,390,809 154,394,412 RGD:1624291
RGD:1600115
G Rpl14 ribosomal protein L14 JBrowse link 8 129,240,528 129,243,400 RGD:1624291
G Rpl26 ribosomal protein L26 JBrowse link 10 55,492,417 55,495,547 RGD:1624291
G Rpl27 ribosomal protein L27 JBrowse link 10 89,352,864 89,356,563 RGD:1624291
RGD:1600115
G Rpl35a ribosomal protein L35a JBrowse link 11 70,963,223 70,967,146 RGD:1624291
G Rpl5 ribosomal protein L5 JBrowse link 14 2,860,963 2,867,397 RGD:1624291
G Rpl7 ribosomal protein L7 JBrowse link 5 2,633,517 2,636,525 RGD:1624291
G Rpp25 ribonuclease P and MRP subunit p25 JBrowse link 8 62,283,336 62,284,716 RGD:1600115
G Rps15 ribosomal protein S15 JBrowse link 7 12,282,134 12,283,573 RGD:1624291
G Rps16 ribosomal protein S16 JBrowse link 1 85,405,499 85,408,444 RGD:1624291
G Rps17 ribosomal protein S17 JBrowse link 1 143,167,329 143,169,915 RGD:1624291
G Rps19 ribosomal protein S19 JBrowse link 1 81,750,873 81,756,629 RGD:1624291
G Rps24 ribosomal protein S24 JBrowse link 16 757,390 762,091 RGD:1624291
G Rps27 ribosomal protein S27 JBrowse link 2 189,572,175 189,573,280 RGD:1624291
RGD:1600115
G Rps28 ribosomal protein S28 JBrowse link 7 18,682,071 18,683,440 RGD:1624291
G Rps6 ribosomal protein S6 JBrowse link 5 105,197,821 105,200,681 RGD:1624291
G Rps7 ribosomal protein S7 JBrowse link 6 47,899,525 47,904,389 RGD:1624291
RGD:13792537
G Rrp1 ribosomal RNA processing 1 JBrowse link 20 10,982,016 10,993,260 RGD:13792537
G Rrp12 ribosomal RNA processing 12 homolog JBrowse link 1 261,106,768 261,140,416 RGD:13792537
G Rrp1b ribosomal RNA processing 1B JBrowse link 20 10,844,234 10,869,830 RGD:13792537
G Rrp36 ribosomal RNA processing 36 JBrowse link 9 16,618,853 16,627,128 RGD:1624291
G Rrp7a ribosomal RNA processing 7 homolog A JBrowse link 7 123,980,251 123,990,139 RGD:13792537
G Rrp8 ribosomal RNA processing 8 JBrowse link 1 170,574,670 170,578,693 RGD:1600115
G Rrp9 ribosomal RNA processing 9, U3 small nucleolar RNA binding protein JBrowse link 8 115,179,899 115,188,551 RGD:1624291
G Sbds SBDS, ribosome maturation factor JBrowse link 12 29,921,443 29,930,602 RGD:1624291
G Utp11 UTP11, small subunit processome component JBrowse link 5 142,666,288 142,681,173 RGD:1600115
G Utp14a UTP14A small subunit processome component JBrowse link X 135,092,123 135,117,409 RGD:1600115
G Utp15 UTP15, small subunit processome component JBrowse link 2 28,351,925 28,370,315 RGD:13792537
G Utp20 UTP20 small subunit processome component JBrowse link 7 29,296,360 29,378,105 RGD:1624291
G Wbp11 WW domain binding protein 11 JBrowse link 4 170,772,166 170,785,613 RGD:1600115
G Wbp11l1 WW domain-binding protein 11-like 1 JBrowse link 4 170,154,257 170,167,724 RGD:1600115
G Wdr18 WD repeat domain 18 JBrowse link 7 12,561,318 12,569,120 RGD:13792537
G Wdr36 WD repeat domain 36 JBrowse link 18 25,637,475 25,665,801 RGD:13792537
G Wdr55 WD repeat domain 55 JBrowse link 18 29,605,217 29,608,730 RGD:1600115
RGD:13792537
G Wdr74 WD repeat domain 74 JBrowse link 1 224,933,906 224,938,659 RGD:1624291
G Ybey ybeY metalloendoribonuclease JBrowse link 20 12,917,111 12,926,587 RGD:1600115
cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bop1 BOP1 ribosomal biogenesis factor JBrowse link 7 117,514,529 117,538,342 RGD:1624291
G Nol9 nucleolar protein 9 JBrowse link 5 169,213,076 169,233,173 RGD:13792537
G Npm1 nucleophosmin 1 JBrowse link 10 18,080,949 18,091,062 RGD:11535027
cleavage involved in rRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LOC103690013 H/ACA ribonucleoprotein complex subunit 2 JBrowse link 10 37,069,387 37,072,758 RGD:13792537
G Nhp2 NHP2 ribonucleoprotein JBrowse link 10 34,975,701 34,979,082 RGD:13792537
G Nob1 NIN1 (RPN12) binding protein 1 homolog JBrowse link 19 38,397,466 38,409,924 RGD:1600115
G Rrp36 ribosomal RNA processing 36 JBrowse link 9 16,618,853 16,627,128 RGD:1600115
endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abt1 activator of basal transcription 1 JBrowse link 17 43,946,118 43,948,224 RGD:13792537
G Fcf1 FCF1 rRNA-processing protein JBrowse link 6 108,796,182 108,808,051 RGD:1624291
G Rcl1 RNA terminal phosphate cyclase-like 1 JBrowse link 1 247,228,012 247,272,369 RGD:1624291
G Tbl3 transducin (beta)-like 3 JBrowse link 10 14,066,984 14,072,197 RGD:13792537
G Utp23 UTP23, small subunit processome component JBrowse link 7 91,384,329 91,389,605 RGD:1624291
endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abt1 activator of basal transcription 1 JBrowse link 17 43,946,118 43,948,224 RGD:13792537
G AC135409.1 RGD:13792537
G Fcf1 FCF1 rRNA-processing protein JBrowse link 6 108,796,182 108,808,051 RGD:1624291
G Kri1 KRI1 homolog JBrowse link 8 22,301,025 22,317,049 RGD:13792537
G Rcl1 RNA terminal phosphate cyclase-like 1 JBrowse link 1 247,228,012 247,272,369 RGD:1624291
G Rpp40 ribonuclease P/MRP subunit p40 JBrowse link 17 29,638,647 29,647,709 RGD:13792537
G Rps21 ribosomal protein S21 JBrowse link 3 175,629,176 175,630,198 RGD:13792537
G Rrs1 ribosome biogenesis regulator 1 homolog JBrowse link 5 9,430,710 9,432,343 RGD:13792537
endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bms1 BMS1 ribosome biogenesis factor JBrowse link 4 150,433,567 150,471,783 RGD:13792537
G Rcl1 RNA terminal phosphate cyclase-like 1 JBrowse link 1 247,228,012 247,272,369 RGD:13792537
G Tsr1 TSR1, ribosome maturation factor JBrowse link 10 61,746,070 61,757,518 RGD:13792537
endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AC135409.1 RGD:13792537
G Rps21 ribosomal protein S21 JBrowse link 3 175,629,176 175,630,198 RGD:13792537
endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abt1 activator of basal transcription 1 JBrowse link 17 43,946,118 43,948,224 RGD:13792537
G Tbl3 transducin (beta)-like 3 JBrowse link 10 14,066,984 14,072,197 RGD:13792537
enzyme-directed rRNA 2'-O-methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ftsj3 FtsJ RNA 2'-O-methyltransferase 3 JBrowse link 10 94,439,059 94,445,503 RGD:1600115
enzyme-directed rRNA pseudouridine synthesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dkc1 dyskerin pseudouridine synthase 1 JBrowse link X 155,844,914 155,862,363 RGD:1600115
RGD:1624291
G LOC100911166 RNA pseudouridylate synthase domain-containing protein 2-like JBrowse link 3 112,519,789 112,524,281 RGD:13792537
G Rpusd1 RNA pseudouridine synthase domain containing 1 JBrowse link 10 15,099,104 15,102,968 RGD:13792537
G Rpusd2 RNA pseudouridine synthase domain containing 2 JBrowse link 3 110,835,654 110,840,903 RGD:13792537
G Tsr3 TSR3 ribosome maturation factor JBrowse link 10 14,598,014 14,600,576 RGD:1624291
exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Eri1 exoribonuclease 1 JBrowse link 16 60,307,148 60,327,237 RGD:13792537
G Eri3 ERI1 exoribonuclease family member 3 JBrowse link 5 136,406,009 136,533,408 RGD:13792537
G Exosc10 exosome component 10 JBrowse link 5 165,374,964 165,398,195 RGD:13792537
G Exosc2 exosome component 2 JBrowse link 3 10,151,734 10,161,997 RGD:13792537
G Exosc3 exosome component 3 JBrowse link 5 60,866,498 60,871,734 RGD:13792537
G Exosc7 exosome component 7 JBrowse link 8 132,204,628 132,229,968 RGD:13792537
G Exosc8 exosome component 8 JBrowse link 2 143,925,643 143,932,240 RGD:13792537
G Exosc9 exosome component 9 JBrowse link 2 123,264,679 123,275,623 RGD:13792537
maturation of 5.8S rRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07052587.1 RGD:13792537
G AABR07064102.1 RGD:13792537
G AABR07064998.2 RGD:13792537
G AABR07065012.1 RGD:13792537
G AABR07065013.1 RGD:13792537
G C1d C1D nuclear receptor corepressor JBrowse link 14 100,415,645 100,427,878 RGD:1624291
RGD:13792537
G Eif6 eukaryotic translation initiation factor 6 JBrowse link 3 151,356,867 151,363,201 RGD:13792537
G Exosc10 exosome component 10 JBrowse link 5 165,374,964 165,398,195 RGD:1624291
G Exosc4 exosome component 4 JBrowse link 7 117,390,302 117,393,044 RGD:1624291
G Las1l LAS1-like, ribosome biogenesis factor JBrowse link X 65,081,591 65,102,344 RGD:13792537
G Mak16 MAK16 homolog JBrowse link 16 64,729,254 64,737,807 RGD:13792537
G Mphosph6 M phase phosphoprotein 6 JBrowse link 19 50,357,314 50,367,137 RGD:1624291
RGD:13792537
G Mtrex Mtr4 exosome RNA helicase JBrowse link 2 44,726,716 44,787,013 RGD:1624291
RGD:13792537
G Nol9 nucleolar protein 9 JBrowse link 5 169,213,076 169,233,173 RGD:1624291
G Nsa2 NSA2 ribosome biogenesis factor JBrowse link 2 27,942,546 27,949,089 RGD:13792537
G Prkdc protein kinase, DNA-activated, catalytic subunit JBrowse link 11 89,293,547 89,510,948 RGD:1624291
G Rpf1 ribosome production factor 1 homolog JBrowse link 2 252,368,316 252,382,838 RGD:13792537
G Rrp15 ribosomal RNA processing 15 homolog JBrowse link 13 105,155,824 105,178,907 RGD:13792537
maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ftsj3 FtsJ RNA 2'-O-methyltransferase 3 JBrowse link 10 94,439,059 94,445,503 RGD:13792537
G Pes1 pescadillo ribosomal biogenesis factor 1 JBrowse link 14 84,211,600 84,227,980 RGD:1624291
RGD:1600115
G Urb1 URB1 ribosome biogenesis homolog JBrowse link 11 30,916,740 30,977,423 RGD:13792537
G Wdr12 WD repeat domain 12 JBrowse link 9 66,851,499 66,878,534 RGD:1624291
RGD:13792537
RGD:1600115
maturation of 5S rRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sart1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP JBrowse link 1 220,762,496 220,771,158 RGD:13792537
maturation of LSU-rRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07003273.1 RGD:13792537
G AABR07006536.1 RGD:13792537
G AABR07007121.1 RGD:13792537
G AABR07018167.1 RGD:13792537
G AABR07027819.1 RGD:13792537
G AABR07029262.1 RGD:13792537
G AABR07030630.1 RGD:13792537
G AABR07045321.1 RGD:13792537
G AABR07049918.1 RGD:13792537
G AABR07052519.1 RGD:13792537
G AABR07052587.1 RGD:13792537
G AABR07054456.1 RGD:13792537
G AABR07057586.1 RGD:13792537
G AC094246.2 RGD:13792537
G AC128901.1 RGD:13792537
G Eif6 eukaryotic translation initiation factor 6 JBrowse link 3 151,356,867 151,363,201 RGD:13792537
G Las1l LAS1-like, ribosome biogenesis factor JBrowse link X 65,081,591 65,102,344 RGD:13792537
G LOC100359574 NHP2 non-histone chromosome protein 2-like 1-like JBrowse link 1 281,863,115 281,864,546 RGD:13792537
G LOC100359687 mitochondrial ribosomal protein L1-like JBrowse link 8 56,411,909 56,502,073 RGD:13792537
G LOC103690013 H/ACA ribonucleoprotein complex subunit 2 JBrowse link 10 37,069,387 37,072,758 RGD:13792537
G LOC103690888 60S ribosomal protein L10a-like JBrowse link X 112,555,128 112,555,864 RGD:13792537
G LOC108348298 ribosomal L1 domain-containing protein 1-like JBrowse link 10 4,487,809 4,499,727 RGD:13792537
G LOC108349606 60S ribosomal protein L7a-like JBrowse link 1 166,282,044 166,282,845 RGD:13792537
G Mak16 MAK16 homolog JBrowse link 16 64,729,254 64,737,807 RGD:13792537
G Mrpl1 mitochondrial ribosomal protein L1 JBrowse link 14 14,951,507 15,008,136 RGD:13792537
G Nhp2 NHP2 ribonucleoprotein JBrowse link 10 34,975,701 34,979,082 RGD:13792537
G Nop2 NOP2 nucleolar protein JBrowse link 4 157,646,759 157,658,502 RGD:13792537
G Nsa2 NSA2 ribosome biogenesis factor JBrowse link 2 27,942,546 27,949,089 RGD:13792537
G Rpf1 ribosome production factor 1 homolog JBrowse link 2 252,368,316 252,382,838 RGD:13792537
G Rpl10a ribosomal protein L10A JBrowse link 20 7,908,309 7,910,867 RGD:13792537
G Rpl7a ribosomal protein L7a JBrowse link 3 5,458,985 5,461,627 RGD:13792537
G Rrp15 ribosomal RNA processing 15 homolog JBrowse link 13 105,155,824 105,178,907 RGD:13792537
G Rsl1d1l1 ribosomal L1 domain containing 1-like 1 JBrowse link 10 4,447,239 4,459,125 RGD:13792537
G Snu13 small nuclear ribonucleoprotein 13 JBrowse link 7 123,282,754 123,287,721 RGD:13792537
maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07013798.1 RGD:13792537
G AABR07030263.1 RGD:13792537
G AABR07037343.1 RGD:13792537
G AABR07073381.1 RGD:13792537
G AC103056.1 RGD:13792537
G AC121415.1 RGD:13792537
G Bop1 BOP1 ribosomal biogenesis factor JBrowse link 7 117,514,529 117,538,342 RGD:1624291
RGD:13792537
RGD:1600115
G Ddx18 DEAD-box helicase 18 JBrowse link 13 37,522,558 37,536,066 RGD:13792537
G Ftsj3 FtsJ RNA 2'-O-methyltransferase 3 JBrowse link 10 94,439,059 94,445,503 RGD:13792537
G Gtpbp4 GTP binding protein 4 JBrowse link 17 63,111,086 63,145,618 RGD:1624291
G Nifk nucleolar protein interacting with the FHA domain of MKI67 JBrowse link 13 34,267,442 34,277,543 RGD:13792537
G Pes1 pescadillo ribosomal biogenesis factor 1 JBrowse link 14 84,211,600 84,227,980 RGD:1624291
RGD:13792537
RGD:1600115
G Rpf2 ribosome production factor 2 homolog JBrowse link 20 45,321,381 45,342,865 RGD:13792537
G Rpl35 ribosomal protein L35 JBrowse link 3 23,294,813 23,297,774 RGD:13792537
G Rpl7 ribosomal protein L7 JBrowse link 5 2,633,517 2,636,525 RGD:13792537
RGD:1600115
G Rpl7l1 ribosomal protein L7-like 1 JBrowse link 9 16,508,477 16,516,502 RGD:13792537
G Urb1 URB1 ribosome biogenesis homolog JBrowse link 11 30,916,740 30,977,423 RGD:13792537
G Wdr12 WD repeat domain 12 JBrowse link 9 66,851,499 66,878,534 RGD:1600115
RGD:13792537
RGD:1624291
G Znhit3 zinc finger, HIT-type containing 3 JBrowse link 10 72,227,710 72,235,932 RGD:13792537
G Znhit6 zinc finger, HIT-type containing 6 JBrowse link 2 251,453,503 251,484,760 RGD:13792537
maturation of SSU-rRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ddx52 DExD-box helicase 52 JBrowse link 10 71,253,667 71,276,397 RGD:13792537
G Helq helicase, POLQ-like JBrowse link 14 10,446,981 10,491,042 RGD:13792537
G LOC100359503 ribosomal protein S28-like JBrowse link 16 70,644,459 70,644,750 RGD:13792537
G LOC100359574 NHP2 non-histone chromosome protein 2-like 1-like JBrowse link 1 281,863,115 281,864,546 RGD:13792537
G LOC100360750 Sm protein F-like JBrowse link 13 47,380,376 47,382,933 RGD:13792537
G Lsm6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 19 32,770,640 32,785,215 RGD:13792537
G Nob1 NIN1 (RPN12) binding protein 1 homolog JBrowse link 19 38,397,466 38,409,924 RGD:13792537
G Nol11 nucleolar protein 11 JBrowse link 10 95,388,223 95,408,053 RGD:1624291
G Nop14 NOP14 nucleolar protein JBrowse link 14 81,340,141 81,361,277 RGD:13792537
G Riok1 RIO kinase 1 JBrowse link 17 27,429,421 27,452,353 RGD:1624291
RGD:13792537
G Riok2 RIO kinase 2 JBrowse link 1 59,130,008 59,146,457 RGD:1624291
RGD:13792537
G Riok3 RIO kinase 3 JBrowse link 18 3,565,166 3,590,739 RGD:1624291
RGD:13792537
G Rps14 ribosomal protein S14 JBrowse link 18 56,042,532 56,047,316 RGD:1600115
G Rps19 ribosomal protein S19 JBrowse link 1 81,750,873 81,756,629 RGD:1624291
G Rps28 ribosomal protein S28 JBrowse link 7 18,682,071 18,683,440 RGD:13792537
G Snu13 small nuclear ribonucleoprotein 13 JBrowse link 7 123,282,754 123,287,721 RGD:13792537
G Srfbp1 serum response factor binding protein 1 JBrowse link 18 47,456,406 47,478,967 RGD:13792537
G Tsr3 TSR3 ribosome maturation factor JBrowse link 10 14,598,014 14,600,576 RGD:13792537
G Utp4 UTP4 small subunit processome component JBrowse link 19 39,087,995 39,116,124 RGD:1624291
G Wdr3 WD repeat domain 3 JBrowse link 2 202,447,749 202,470,398 RGD:13792537
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07005506.1 RGD:13792537
G AABR07056611.1 RGD:13792537
G Bms1 BMS1 ribosome biogenesis factor JBrowse link 4 150,433,567 150,471,783 RGD:13792537
G Bysl bystin-like JBrowse link 9 15,393,461 15,403,212 RGD:1624291
RGD:1600115
G Dcaf13 DDB1 and CUL4 associated factor 13 JBrowse link 7 78,005,232 78,040,220 RGD:13792537
G Dhx37 DEAH-box helicase 37 JBrowse link 12 36,594,058 36,614,165 RGD:13792537
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit JBrowse link 1 80,293,574 80,307,334 RGD:1624291
G Fam207a family with sequence similarity 207, member A JBrowse link 20 11,863,145 11,896,833 RGD:1600115
G Gtf2h5 general transcription factor IIH subunit 5 JBrowse link 1 46,978,345 46,985,032 RGD:1624291
G Heatr1 HEAT repeat containing 1 JBrowse link 17 66,446,135 66,488,303 RGD:13792537
G LOC100363452 ribosomal protein S8-like JBrowse link 3 103,192,670 103,193,343 RGD:13792537
G LOC100911847 40S ribosomal protein S14-like JBrowse link 5 144,083,030 144,083,602 RGD:13792537
G LOC108348069 HEAT repeat-containing protein 1 JBrowse link 17 66,578,885 66,619,465 RGD:13792537
G LOC297756 ribosomal protein S8-like JBrowse link 5 2,799,565 2,803,855 RGD:13792537
G Mrps11 mitochondrial ribosomal protein S11 JBrowse link 1 140,477,645 140,487,249 RGD:13792537
G NEWGENE_1562416 TSR2, ribosome maturation factor JBrowse link X 20,224,112 20,232,647 RGD:13792537
G Ngdn neuroguidin JBrowse link 15 33,677,333 33,684,840 RGD:13792537
G Nol10 nucleolar protein 10 JBrowse link 6 42,656,661 42,745,099 RGD:13792537
G Pwp2 PWP2, small subunit processome component JBrowse link 20 11,228,892 11,243,204 RGD:13792537
G Rps14 ribosomal protein S14 JBrowse link 18 56,042,532 56,047,316 RGD:13792537
G Rps16 ribosomal protein S16 JBrowse link 1 85,405,499 85,408,444 RGD:13792537
G Rps19 ribosomal protein S19 JBrowse link 1 81,750,873 81,756,629 RGD:1624291
G Rps8 ribosomal protein S8 JBrowse link 5 136,020,941 136,023,511 RGD:13792537
G Rrp36 ribosomal RNA processing 36 JBrowse link 9 16,618,853 16,627,128 RGD:13792537
G Tsr1 TSR1, ribosome maturation factor JBrowse link 10 61,746,070 61,757,518 RGD:13792537
G Tsr2 TSR2, ribosome maturation factor JBrowse link X 20,141,406 20,146,082 RGD:13792537
G Utp25 UTP25, small subunit processor component JBrowse link 13 111,828,052 111,849,654 RGD:13792537
G Utp3 UTP3, small subunit processome component JBrowse link 14 21,153,998 21,155,652 RGD:13792537
G Utp4 UTP4 small subunit processome component JBrowse link 19 39,087,995 39,116,124 RGD:13792537
G Utp6 UTP6 small subunit processome component JBrowse link 10 67,255,177 67,285,754 RGD:13792537
G Wdr46 WD repeat domain 46 JBrowse link 20 5,447,860 5,455,632 RGD:13792537
negative regulation of rRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Kat2b lysine acetyltransferase 2B JBrowse link 9 4,440,982 4,492,949 RGD:1624291
G Shq1 SHQ1, H/ACA ribonucleoprotein assembly factor JBrowse link 4
4
133,037,515
133,131,711
133,127,183
133,133,170
RGD:1624291
positive regulation of rRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bud23 BUD23, rRNA methyltransferase and ribosome maturation factor JBrowse link 12 24,669,626 24,680,833 RGD:1624291
G Dimt1 DIMT1 rRNA methyltransferase and ribosome maturation factor JBrowse link 2 38,120,562 38,144,871 RGD:1624291
G Heatr1 HEAT repeat containing 1 JBrowse link 17 66,446,135 66,488,303 RGD:1624291
G Riok1 RIO kinase 1 JBrowse link 17 27,429,421 27,452,353 RGD:1624291
G Riok2 RIO kinase 2 JBrowse link 1 59,130,008 59,146,457 RGD:1624291
G Sirt7 sirtuin 7 JBrowse link 10 109,796,046 109,802,821 RGD:1600115
RGD:1624291
G Trmt112 tRNA methyltransferase subunit 11-2 JBrowse link 1 222,167,927 222,168,780 RGD:1624291
G Utp15 UTP15, small subunit processome component JBrowse link 2 28,351,925 28,370,315 RGD:1624291
G Wdr43 WD repeat domain 43 JBrowse link 6 23,433,532 23,473,179 RGD:1624291
G Wdr75 WD repeat domain 75 JBrowse link 9 52,687,845 52,717,808 RGD:1624291
regulation of rRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ncl nucleolin JBrowse link 9 93,369,119 93,377,643 RGD:9588272
G Usp36 ubiquitin specific peptidase 36 JBrowse link 10 107,292,828 107,324,355 RGD:1624291
rRNA (guanine-N7)-methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bud23 BUD23, rRNA methyltransferase and ribosome maturation factor JBrowse link 12 24,669,626 24,680,833 RGD:1624291
RGD:13792537
G Trmt112 tRNA methyltransferase subunit 11-2 JBrowse link 1 222,167,927 222,168,780 RGD:1624291
RGD:13792537
rRNA 2'-O-methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mrm1 mitochondrial rRNA methyltransferase 1 JBrowse link 10 72,136,241 72,143,075 RGD:1600115
G Mrm3 mitochondrial rRNA methyltransferase 3 JBrowse link 10 64,398,308 64,406,193 RGD:1600115
rRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Eri1 exoribonuclease 1 JBrowse link 16 60,307,148 60,327,237 RGD:1624291
RGD:1600115
rRNA acetylation involved in maturation of SSU-rRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nat10 N-acetyltransferase 10 JBrowse link 3 93,658,119 93,698,136 RGD:13792537
rRNA base methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Emg1 EMG1 N1-specific pseudouridine methyltransferase JBrowse link 4 157,222,366 157,230,647 RGD:13792537
G Fdxacb1 ferredoxin-fold anticodon binding domain containing 1 JBrowse link 8 55,196,758 55,201,610 RGD:13792537
G Mettl15 methyltransferase like 15 JBrowse link 3 100,186,106 100,366,148 RGD:13792537
G Nop2 NOP2 nucleolar protein JBrowse link 4 157,646,759 157,658,502 RGD:13792537
G Nsun5 NOP2/Sun RNA methyltransferase 5 JBrowse link 12 24,341,940 24,346,900 RGD:13792537
RGD:1624291
rRNA methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bmt2 base methyltransferase of 25S rRNA 2 homolog JBrowse link 4 40,064,131 40,136,074 RGD:1600115
G Dimt1 DIMT1 rRNA methyltransferase and ribosome maturation factor JBrowse link 2 38,120,562 38,144,871 RGD:1624291
RGD:13792537
G Fbl fibrillarin JBrowse link 1 85,103,519 85,112,619 RGD:1600115
RGD:13792537
RGD:1624291
G Fbll1 fibrillarin-like 1 JBrowse link 10 20,620,957 20,622,600 RGD:13792537
G Ftsj3 FtsJ RNA 2'-O-methyltransferase 3 JBrowse link 10 94,439,059 94,445,503 RGD:13792537
G LOC103690007 5-methylcytosine rRNA methyltransferase NSUN4 JBrowse link 5 134,362,953 134,383,690 RGD:13792537
G Mettl5 methyltransferase like 5 JBrowse link 3 56,101,597 56,113,823 RGD:1624291
G Mrm2 mitochondrial rRNA methyltransferase 2 JBrowse link 12 16,398,749 16,403,656 RGD:1600115
G Nsun3 NOP2/Sun RNA methyltransferase 3 JBrowse link 11 38,535,971 38,590,274 RGD:13792537
G Nsun4 NOP2/Sun RNA methyltransferase 4 JBrowse link 5 134,885,377 134,905,492 RGD:1624291
RGD:13792537
G Tfb1m transcription factor B1, mitochondrial JBrowse link 1 44,433,116 44,474,674 RGD:1600115
RGD:13792537
G Tfb2m transcription factor B2, mitochondrial JBrowse link 13 97,820,493 97,838,275 RGD:13792537
G Trmt112 tRNA methyltransferase subunit 11-2 JBrowse link 1 222,167,927 222,168,780 RGD:1624291
G Zcchc4 zinc finger CCHC-type containing 4 JBrowse link 14 60,511,494 60,553,167 RGD:1600115
RGD:13792537
RGD:1624291
rRNA pseudouridine synthesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dkc1 dyskerin pseudouridine synthase 1 JBrowse link X 155,844,914 155,862,363 RGD:1624291
RGD:13792537
G LOC103690013 H/ACA ribonucleoprotein complex subunit 2 JBrowse link 10 37,069,387 37,072,758 RGD:13792537
G Nhp2 NHP2 ribonucleoprotein JBrowse link 10 34,975,701 34,979,082 RGD:13792537
G Nop10 NOP10 ribonucleoprotein JBrowse link 3 103,747,654 103,748,739 RGD:13792537
snoRNA guided rRNA pseudouridine synthesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dkc1 dyskerin pseudouridine synthase 1 JBrowse link X 155,844,914 155,862,363 RGD:633420
G Gar1 GAR1 ribonucleoprotein JBrowse link 2 235,250,453 235,258,464 RGD:633420
RGD:13792537
G Nhp2 NHP2 ribonucleoprotein JBrowse link 10 34,975,701 34,979,082 RGD:633420
G Nop10 NOP10 ribonucleoprotein JBrowse link 3 103,747,654 103,748,739 RGD:633420

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19576
    cellular process 18361
      cellular component organization or biogenesis 6480
        cellular component biogenesis 3142
          ribonucleoprotein complex biogenesis 486
            ribosome biogenesis 348
              rRNA processing 230
                chloroplast rRNA processing 0
                cleavage involved in rRNA processing + 27
                maturation of 2S rRNA + 0
                maturation of 4.5S rRNA 0
                maturation of 5.8S rRNA + 39
                maturation of 5S rRNA + 1
                maturation of LSU-rRNA + 56
                maturation of SSU-rRNA + 59
                negative regulation of rRNA processing 2
                positive regulation of rRNA processing 10
                rRNA 3'-end processing + 10
                rRNA 5'-end processing + 2
                rRNA modification + 32
                regulation of rRNA processing + 14
                snoRNA release from pre-rRNA 0
Path 2
Term Annotations click to browse term
  biological_process 19576
    metabolic process 11899
      cellular metabolic process 10737
        cellular aromatic compound metabolic process 5503
          nucleobase-containing compound metabolic process 5276
            nucleic acid metabolic process 4782
              RNA metabolic process 4290
                ncRNA metabolic process 489
                  rRNA metabolic process 242
                    rRNA processing 230
                      chloroplast rRNA processing 0
                      cleavage involved in rRNA processing + 27
                      maturation of 2S rRNA + 0
                      maturation of 4.5S rRNA 0
                      maturation of 5.8S rRNA + 39
                      maturation of 5S rRNA + 1
                      maturation of LSU-rRNA + 56
                      maturation of SSU-rRNA + 59
                      negative regulation of rRNA processing 2
                      positive regulation of rRNA processing 10
                      rRNA 3'-end processing + 10
                      rRNA 5'-end processing + 2
                      rRNA modification + 32
                      regulation of rRNA processing + 14
                      snoRNA release from pre-rRNA 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.