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ONTOLOGY REPORT - ANNOTATIONS


Term:transcription elongation from RNA polymerase II promoter
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Accession:GO:0006368 term browser browse the term
Definition:The extension of an RNA molecule after transcription initiation and promoter clearance at an RNA polymerase II promoter by the addition of ribonucleotides catalyzed by RNA polymerase II.
Synonyms:exact_synonym: RNA elongation from Pol II promoter
 related_synonym: RNA polymerase II transcription elongation factor activity


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transcription elongation from RNA polymerase II promoter term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADRM1 adhesion regulating molecule 1 ISO (PMID:11818576) UniProtKB PMID:11818576 NCBI chr24:46,309,478...46,314,892
Ensembl chr24:46,275,175...46,491,347
JBrowse link
G CDC73 cell division cycle 73 IEA InterPro
Ensembl
GO_REF:0000002, GO_REF:0000107 NCBI chr38:5,826,209...5,937,930
Ensembl chr38:5,805,916...5,938,111
JBrowse link
G CDK12 cyclin dependent kinase 12 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:22,900,170...22,979,353
Ensembl chr 9:22,917,979...22,979,019
JBrowse link
G CDK13 cyclin dependent kinase 13 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:9,801,350...9,920,401
Ensembl chr18:9,803,535...9,920,281
JBrowse link
G CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component IEA Ensembl GO_REF:0000107 NCBI chr21:33,915,804...33,949,597
Ensembl chr21:33,915,772...33,949,103
JBrowse link
G ELL elongation factor for RNA polymerase II IEA InterPro GO_REF:0000002 NCBI chr20:44,512,665...44,592,156
Ensembl chr20:44,489,219...44,598,497
JBrowse link
G ELL2 elongation factor for RNA polymerase II 2 IEA InterPro GO_REF:0000002 NCBI chr 3:13,673,653...13,746,604
Ensembl chr 3:13,673,785...13,746,316
JBrowse link
G ELL3 elongation factor for RNA polymerase II 3 IEA Ensembl GO_REF:0000107 NCBI chr30:10,514,633...10,517,963
Ensembl chr30:10,515,045...10,517,880
JBrowse link
G ELOA elongin A IEA InterPro GO_REF:0000002 NCBI chr 2:75,730,467...75,746,438
Ensembl chr 2:75,732,725...75,741,999
JBrowse link
G ELOB elongin B IEA InterPro GO_REF:0000002 NCBI chr 6:38,311,082...38,314,502
Ensembl chr 6:38,311,082...38,314,508
JBrowse link
G ELOF1 elongation factor 1 homolog IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:49,821,968...49,828,052
Ensembl chr14:1,384,324...1,385,366
Ensembl chr20:1,384,324...1,385,366
JBrowse link
G ENY2 ENY2 transcription and export complex 2 subunit IEA UniProt GO_REF:0000104 NCBI chr13:9,895,537...9,905,081
Ensembl chr13:9,895,630...9,905,301
JBrowse link
G ENY2 ENY2 transcription and export complex 2 subunit IEA UniProt GO_REF:0000104 Ensembl chr26:5,027,305...5,027,595 JBrowse link
G FKBP8 FKBP prolyl isomerase 8 IEA InterPro GO_REF:0000002 NCBI chr20:44,494,856...44,504,084
Ensembl chr20:44,489,219...44,598,497
JBrowse link
G GTF2F1 general transcription factor IIF subunit 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr20:53,771,201...53,780,646
Ensembl chr20:53,771,325...53,780,644
JBrowse link
G GTF2F2 general transcription factor IIF subunit 2 ISO RGD PMID:7929273 RGD:9681417 NCBI chr22:5,757,445...5,904,725
Ensembl chr22:5,757,960...5,904,814
JBrowse link
G ISYNA1 inositol-3-phosphate synthase 1 IEA InterPro GO_REF:0000002 NCBI chr20:44,594,816...44,598,495
Ensembl chr20:44,489,219...44,598,497
JBrowse link
G LEO1 LEO1 homolog, Paf1/RNA polymerase II complex component IEA InterPro
Ensembl
GO_REF:0000002, GO_REF:0000107 NCBI chr30:17,614,502...17,651,715
Ensembl chr30:17,598,076...17,651,290
JBrowse link
G LOC100688271 transcription and mRNA export factor ENY2 pseudogene IEA UniProt GO_REF:0000104 NCBI chr26:5,027,290...5,027,643 JBrowse link
G LOC102152097 RNA polymerase II elongation factor ELL2-like IEA InterPro GO_REF:0000002 NCBI chr  X:115,036,815...115,151,635 JBrowse link
G PAF1 PAF1 homolog, Paf1/RNA polymerase II complex component IEA InterPro
Ensembl
GO_REF:0000002, GO_REF:0000107 NCBI chr 1:113,828,219...113,832,747
Ensembl chr 1:113,828,007...113,832,735
JBrowse link
G PCID2 PCI domain containing 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr22:60,602,440...60,623,811
Ensembl chr22:60,602,888...60,623,719
JBrowse link
G RTF1 RTF1 homolog, Paf1/RNA polymerase II complex component IEA Ensembl GO_REF:0000107 NCBI chr30:8,468,001...8,524,712
Ensembl chr30:8,467,761...8,522,874
JBrowse link
G SETD2 SET domain containing 2, histone lysine methyltransferase IEA Ensembl GO_REF:0000107 NCBI chr20:41,675,539...41,800,697
Ensembl chr20:41,675,599...41,800,612
JBrowse link
G SOX10 SRY-box transcription factor 10 ISO RGD PMID:25524031 RGD:12879827 NCBI chr10:26,680,441...26,690,530
Ensembl chr10:26,681,122...26,689,882
JBrowse link
G SUPT16H SPT16 homolog, facilitates chromatin remodeling subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:18,387,624...18,429,553
Ensembl chr15:18,388,512...18,429,553
JBrowse link
G SUPT4H1 SPT4 homolog, DSIF elongation factor subunit IEA Ensembl GO_REF:0000107 NCBI chr 9:32,990,060...32,996,023
Ensembl chr 9:32,990,061...33,191,176
JBrowse link
G SUPT5H SPT5 homolog, DSIF elongation factor subunit IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 1:113,759,419...113,788,490
Ensembl chr 1:113,759,423...113,788,447
JBrowse link
G SUPT6H SPT6 homolog, histone chaperone and transcription elongation factor IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:42,859,154...42,896,044
Ensembl chr 9:42,859,361...42,904,487
JBrowse link
G WDR61 WD repeat domain 61 ISO (PMID:20178742) GO_Central PMID:20178742 NCBI chr 3:58,403,146...58,418,782
Ensembl chr 3:58,403,146...58,418,782
JBrowse link
maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POLR2I RNA polymerase II subunit I IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:116,586,022...116,587,551
Ensembl chr 1:116,586,329...116,587,550
JBrowse link
negative regulation of transcription elongation from RNA polymerase II promoter term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AXIN1 axin 1 ISO (MGI:MGI:1336856|PMID:10318824), (MGI:MGI:3840033|PMID:19204372) MGI PMID:10318824, PMID:19204372 MGI:MGI:1336856, MGI:MGI:3840033 NCBI chr 6:40,155,797...40,218,330
Ensembl chr 6:40,158,244...40,218,343
JBrowse link
G EAPP E2F associated phosphoprotein IEA Ensembl GO_REF:0000107 NCBI chr 8:13,316,239...13,399,221
Ensembl chr 8:13,375,980...13,399,173
JBrowse link
G EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit IEA Ensembl GO_REF:0000107 NCBI chr16:1,926,443...1,991,995
Ensembl chr16:1,925,956...1,991,838
JBrowse link
G HNRNPU heterogeneous nuclear ribonucleoprotein U IEA Ensembl GO_REF:0000107 NCBI chr 7:35,832,956...35,842,898
Ensembl chr 7:35,833,988...35,843,754
JBrowse link
G NELFA negative elongation factor complex member A IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:62,147,948...62,164,039
Ensembl chr 3:62,147,948...62,164,112
JBrowse link
G NELFB negative elongation factor complex member B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:48,411,725...48,425,044
Ensembl chr 9:48,408,005...48,423,308
JBrowse link
G NELFCD negative elongation factor complex member C/D IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr24:43,685,356...43,743,239
Ensembl chr24:43,734,236...43,743,233
JBrowse link
G NELFE negative elongation factor complex member E IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:1,406,411...1,412,387
Ensembl chr12:1,406,271...1,412,324
JBrowse link
G RECQL5 RecQ like helicase 5 IEA Ensembl GO_REF:0000107 NCBI chr 9:4,902,753...4,940,442
Ensembl chr 9:4,903,477...4,940,436
JBrowse link
G RNF168 ring finger protein 168 IEA Ensembl GO_REF:0000107 NCBI chr33:29,542,209...29,575,127
Ensembl chr33:29,539,182...29,628,248
JBrowse link
G RNF8 ring finger protein 8 ISO (PMID:20550933) UniProtKB PMID:20550933 NCBI chr12:6,380,365...6,415,407
Ensembl chr12:6,292,459...6,415,382
JBrowse link
G SHH sonic hedgehog signaling molecule IEA Ensembl GO_REF:0000107 NCBI chr16:18,650,553...18,663,571
Ensembl chr16:18,484,809...18,662,903
JBrowse link
G SUPT4H1 SPT4 homolog, DSIF elongation factor subunit IEA Ensembl GO_REF:0000107 NCBI chr 9:32,990,060...32,996,023
Ensembl chr 9:32,990,061...33,191,176
JBrowse link
positive regulation of transcription elongation from RNA polymerase II promoter term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRD4 bromodomain containing 4 IEA Ensembl GO_REF:0000107 NCBI chr20:46,844,795...46,927,620
Ensembl chr20:46,891,514...46,927,608
JBrowse link
G BTBD18 BTB domain containing 18 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:38,470,643...38,478,512
Ensembl chr18:38,471,214...38,478,068
JBrowse link
G CBX7 chromobox 7 ISO RGD PMID:19706751 RGD:9586729 NCBI chr10:25,876,022...25,896,284
Ensembl chr10:25,876,016...25,893,501
JBrowse link
G CDC73 cell division cycle 73 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr38:5,826,209...5,937,930
Ensembl chr38:5,805,916...5,938,111
JBrowse link
G CDK12 cyclin dependent kinase 12 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:22,900,170...22,979,353
Ensembl chr 9:22,917,979...22,979,019
JBrowse link
G CDK13 cyclin dependent kinase 13 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr18:9,801,350...9,920,401
Ensembl chr18:9,803,535...9,920,281
JBrowse link
G CTNNB1 catenin beta 1 IEA Ensembl GO_REF:0000107 NCBI chr23:10,559,722...10,572,933
Ensembl chr23:10,559,718...10,572,927
JBrowse link
G EAPP E2F associated phosphoprotein IEA Ensembl GO_REF:0000107 NCBI chr 8:13,316,239...13,399,221
Ensembl chr 8:13,375,980...13,399,173
JBrowse link
G ELL elongation factor for RNA polymerase II ISO (PMID:23932780) UniProtKB PMID:23932780 NCBI chr20:44,512,665...44,592,156
Ensembl chr20:44,489,219...44,598,497
JBrowse link
G ELOC elongin C IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr29:22,452,254...22,476,523
Ensembl chr29:22,453,544...22,476,429
JBrowse link
G GTF2F1 general transcription factor IIF subunit 1 IEA InterPro GO_REF:0000002 NCBI chr20:53,771,201...53,780,646
Ensembl chr20:53,771,325...53,780,644
JBrowse link
G IKZF1 IKAROS family zinc finger 1 ISO (MGI:MGI:5317044|PMID:21245044) MGI PMID:21245044 MGI:MGI:5317044 NCBI chr18:1,661,851...1,750,987
Ensembl chr18:1,661,690...1,770,768
JBrowse link
G LEO1 LEO1 homolog, Paf1/RNA polymerase II complex component IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr30:17,614,502...17,651,715
Ensembl chr30:17,598,076...17,651,290
JBrowse link
G MAP2K1 mitogen-activated protein kinase kinase 1 ISO RGD PMID:18086894 RGD:2292639 NCBI chr30:30,683,192...30,760,479
Ensembl chr30:30,683,107...30,760,479
JBrowse link
G SUPT16H SPT16 homolog, facilitates chromatin remodeling subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:18,387,624...18,429,553
Ensembl chr15:18,388,512...18,429,553
JBrowse link
G SUPT6H SPT6 homolog, histone chaperone and transcription elongation factor IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000104 NCBI chr 9:42,859,154...42,896,044
Ensembl chr 9:42,859,361...42,904,487
JBrowse link
regulation of transcription elongation from RNA polymerase II promoter term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EAF1 ELL associated factor 1 ISO (PMID:32087315) ARUK-UCL PMID:32087315 NCBI chr23:27,188,983...27,203,441
Ensembl chr23:27,159,751...27,203,558
JBrowse link
G EAF2 ELL associated factor 2 ISO (PMID:32087315) ARUK-UCL PMID:32087315 NCBI chr33:25,113,348...25,147,064
Ensembl chr33:25,112,570...25,146,692
JBrowse link
G LDB1 LIM domain binding 1 IEA Ensembl GO_REF:0000107 NCBI chr28:14,646,409...14,658,324
Ensembl chr28:14,646,056...14,658,548
JBrowse link
G SUPT4H1 SPT4 homolog, DSIF elongation factor subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:32,990,060...32,996,023
Ensembl chr 9:32,990,061...33,191,176
JBrowse link
G WDR43 WD repeat domain 43 IEA Ensembl GO_REF:0000107 NCBI chr17:22,769,281...22,813,559
Ensembl chr17:22,769,318...22,812,199
JBrowse link
G ZMYND11 zinc finger MYND-type containing 11 ISO (MGI:MGI:5560379|PMID:24590075) UniProtKB PMID:24590075 MGI:MGI:5560379 NCBI chr 2:34,492,283...34,614,152
Ensembl chr 2:34,493,994...34,570,523
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16187
    metabolic process 10658
      organic substance metabolic process 10133
        macromolecule metabolic process 8796
          gene expression 5421
            transcription, DNA-templated 3091
              DNA-templated transcription, elongation 76
                transcription elongation from RNA polymerase II promoter 55
                  maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter 1
                  negative regulation of transcription elongation from RNA polymerase II promoter 13
                  positive regulation of transcription elongation from RNA polymerase II promoter + 16
                  regulation of transcription elongation from RNA polymerase II promoter + 33
Path 2
Term Annotations click to browse term
  biological_process 16187
    metabolic process 10658
      cellular metabolic process 9650
        cellular aromatic compound metabolic process 5119
          nucleobase-containing compound metabolic process 4916
            nucleic acid metabolic process 4467
              RNA metabolic process 4002
                RNA biosynthetic process 3149
                  nucleic acid-templated transcription 3138
                    transcription, DNA-templated 3091
                      DNA-templated transcription, elongation 76
                        transcription elongation from RNA polymerase II promoter 55
                          maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter 1
                          negative regulation of transcription elongation from RNA polymerase II promoter 13
                          positive regulation of transcription elongation from RNA polymerase II promoter + 16
                          regulation of transcription elongation from RNA polymerase II promoter + 33
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.