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ONTOLOGY REPORT - ANNOTATIONS


Term:transcription by RNA polymerase III
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Accession:GO:0006383 term browser browse the term
Definition:The synthesis of RNA from a DNA template by RNA polymerase III, originating at an RNAP III promoter.
Synonyms:exact_synonym: transcription from Pol III promoter;   transcription from RNA polymerase III promoter
 narrow_synonym: U2 snRNA transcription (S. cerevisiae);   U6 snRNA transcription (mammalian);   transcription from RNA polymerase III type 2 promoter;   transcription from RNA polymerase III type 3 promoter;   transcription from a RNA polymerase III hybrid type promoter
 related_synonym: RNA polymerase III transcription factor activity
 alt_id: GO:0001009;   GO:0001035;   GO:0001041


show annotations for term's descendants           Sort by:
 
transcription by RNA polymerase III term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crcp CGRP receptor component ISO
ISS
(PMID:12482973)
GO_REF:0000024
RGD
UniProt
PMID:12482973 GO_REF:0000024 NCBI chr12:30,125,237...30,160,857
Ensembl chr12:30,125,168...30,180,115
JBrowse link
G Gtf3c2 general transcription factor IIIC subunit 2 ISO
IBA
(PMID:17409385)
PMID:21873635
RGD PMID:17409385, PMID:21873635 RGD:13792537 NCBI chr 6:26,560,601...26,584,533
Ensembl chr 6:26,560,601...26,584,535
JBrowse link
G Gtf3c3 general transcription factor IIIC subunit 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:60,999,159...61,033,612
Ensembl chr 9:60,969,061...61,033,580
JBrowse link
G Gtf3c6 general transcription factor 3C subunit 6 ISO
IBA
(PMID:17409385)
PMID:21873635
RGD PMID:17409385, PMID:21873635 RGD:13792537 NCBI chr20:45,347,788...45,356,868
Ensembl chr20:45,347,271...45,356,358
JBrowse link
G Polr1c RNA polymerase I and III subunit C IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 9:17,120,759...17,124,871
Ensembl chr 9:17,120,759...17,124,871
JBrowse link
G Polr2f RNA polymerase II, I and III subunit F TAS RGD PMID:10393248 RGD:1299534 NCBI chr 7:120,380,543...120,392,214
Ensembl chr 7:120,380,544...120,390,954
JBrowse link
G Polr3d RNA polymerase III subunit D IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr15:52,129,471...52,134,140
Ensembl chr15:52,129,471...52,134,140
JBrowse link
G Polr3f RNA polymerase III subunit F IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 3:138,684,685...138,701,055
Ensembl chr 3:138,684,685...138,701,055
JBrowse link
G Polr3g RNA polymerase III subunit G ISO (PMID:20154270) RGD PMID:20154270 NCBI chr 2:9,537,642...9,578,551
Ensembl chr 2:9,537,642...9,578,310
JBrowse link
G Polr3gl RNA polymerase III subunit GL ISO (PMID:20154270) RGD PMID:20154270 NCBI chr 2:198,698,044...198,719,609
Ensembl chr 2:198,702,587...198,719,202
JBrowse link
G Polr3h RNA polymerase III subunit H ISO (PMID:12391170) RGD PMID:12391170 NCBI chr 7:123,146,248...123,156,558
Ensembl chr 7:123,146,249...123,156,558
JBrowse link
G Tbp TATA box binding protein ISO MGI:MGI:2429772 (MGI:MGI:2429335|PMID:12411709)
(PMID:26638071), (PMID:9027316)
RGD PMID:9027316, PMID:12411709, PMID:26638071 MGI:MGI:2429335 NCBI chr 1:57,491,381...57,509,335
Ensembl chr 1:57,491,643...57,508,449
JBrowse link
5S class rRNA transcription by RNA polymerase III term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gtf3c1 general transcription factor IIIC subunit 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:197,032,473...197,098,676
Ensembl chr 1:197,032,474...197,098,649
JBrowse link
negative regulation of transcription by RNA polymerase III term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Maf1 MAF1 homolog, negative regulator of RNA polymerase III ISS
ISO
IBA
GO_REF:0000024
(PMID:17499043), (PMID:18377933), (PMID:20233713)
PMID:21873635
(MGI:MGI:4947357|PMID:18377933)
UniProt
RGD
PMID:17499043, PMID:18377933, PMID:20233713, PMID:21873635 GO_REF:0000024, MGI:MGI:4947357, RGD:13792537 NCBI chr 7:117,417,643...117,420,722
Ensembl chr 7:117,417,687...117,420,719
JBrowse link
G Nab2 Ngfi-A binding protein 2 ISO (PMID:8668170) RGD PMID:8668170 NCBI chr 7:70,963,580...70,971,471
Ensembl chr 7:70,961,575...70,969,905
JBrowse link
G Prdx5 peroxiredoxin 5 IEA
ISO
GO_REF:0000107
(PMID:10095767)
Ensembl
RGD
PMID:10095767 GO_REF:0000107 NCBI chr 1:222,164,462...222,167,447
Ensembl chr 1:222,164,462...222,167,447
JBrowse link
positive regulation of transcription by RNA polymerase III term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ar androgen receptor ISO
IEA
(PMID:18487222)
GO_REF:0000107
RGD
Ensembl
PMID:18487222 GO_REF:0000107 NCBI chr  X:67,656,253...67,828,998
Ensembl chr  X:67,656,253...67,829,026
JBrowse link
G Brf1 BRF1, RNA polymerase III transcription initiation factor subunit IMP RGD PMID:18456653 RGD:9586716 NCBI chr 6:137,762,230...137,808,573
Ensembl chr 6:137,765,122...137,808,303
JBrowse link
G Cebpa CCAAT/enhancer binding protein alpha IEA
ISO
GO_REF:0000107
(PMID:12695546)
Ensembl
RGD
PMID:12695546 GO_REF:0000107 NCBI chr 1:91,363,492...91,366,164
Ensembl chr 1:91,363,492...91,366,164
JBrowse link
G Chd8 chromodomain helicase DNA binding protein 8 ISO
ISS
(PMID:17938208)
GO_REF:0000024
RGD
UniProt
PMID:17938208 GO_REF:0000024 NCBI chr15:28,612,932...28,672,574
Ensembl chr15:28,612,932...28,672,569
JBrowse link
G Ell elongation factor for RNA polymerase II ISO (PMID:23932780) RGD PMID:23932780 NCBI chr16:20,594,129...20,641,441
Ensembl chr16:20,594,072...20,641,908
JBrowse link
G Foxa2 forkhead box A2 ISO (MGI:MGI:4456945|PMID:15737987) RGD PMID:15737987 MGI:MGI:4456945 NCBI chr 3:142,383,084...142,387,493
Ensembl chr 3:142,383,278...142,387,481
JBrowse link
G Ice1 interactor of little elongation complex ELL subunit 1 ISO (PMID:23932780) RGD PMID:23932780 NCBI chr 1:35,280,481...35,322,769
Ensembl chr 1:35,280,701...35,319,182
JBrowse link
G Ice2 interactor of little elongation complex ELL subunit 2 ISO
IBA
(PMID:23932780)
PMID:21873635
RGD PMID:23932780, PMID:21873635 RGD:13792537 NCBI chr 8:75,625,147...75,666,959
Ensembl chr 8:75,625,174...75,666,866
JBrowse link
G Mtor mechanistic target of rapamycin kinase ISO (PMID:20233713) RGD PMID:20233713 NCBI chr 5:165,263,813...165,373,967
Ensembl chr 5:165,263,800...165,373,967
JBrowse link
G Rptor regulatory associated protein of MTOR, complex 1 ISO (PMID:20233713) RGD PMID:20233713 NCBI chr10:108,750,620...109,058,691
Ensembl chr10:108,750,620...109,058,691
JBrowse link
G Zc3h8 zinc finger CCCH type containing 8 ISO (PMID:23932780) RGD PMID:23932780 NCBI chr 3:121,471,836...121,488,528
Ensembl chr 3:121,471,810...121,488,540
JBrowse link
regulation of transcription by RNA polymerase III term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brf2 BRF2, RNA polymerase III transcription initiation factor subunit ISO
ISS
(PMID:26638071)
GO_REF:0000024
RGD
UniProt
PMID:26638071 GO_REF:0000024 NCBI chr16:69,089,955...69,094,678
Ensembl chr16:69,089,955...69,094,680
JBrowse link
G Dhx36 DEAH-box helicase 36 ISS
ISO
GO_REF:0000024
(PMID:18279852)
UniProt
RGD
PMID:18279852 GO_REF:0000024 NCBI chr 2:152,785,844...152,824,549
Ensembl chr 2:152,785,844...152,824,547
JBrowse link
G Tenm1 teneurin transmembrane protein 1 ISO (MGI:MGI:5487510|PMID:22209827) RGD PMID:22209827 MGI:MGI:5487510 NCBI chr  X:129,034,755...129,336,023
NCBI chr  X:128,923,951...128,951,520
JBrowse link
RNA polymerase III preinitiation complex assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bdp1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:30,248,458...30,340,211
Ensembl chr 2:30,250,633...30,340,208
JBrowse link
G Brf1 BRF1, RNA polymerase III transcription initiation factor subunit IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:137,762,230...137,808,573
Ensembl chr 6:137,765,122...137,808,303
JBrowse link
snRNA transcription by RNA polymerase III term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ell elongation factor for RNA polymerase II ISO (PMID:23932780) RGD PMID:23932780 NCBI chr16:20,594,129...20,641,441
Ensembl chr16:20,594,072...20,641,908
JBrowse link
G Ice1 interactor of little elongation complex ELL subunit 1 ISO (PMID:23932780) RGD PMID:23932780 NCBI chr 1:35,280,481...35,322,769
Ensembl chr 1:35,280,701...35,319,182
JBrowse link
G Ice2 interactor of little elongation complex ELL subunit 2 ISO
IBA
(PMID:23932780)
PMID:21873635
RGD PMID:23932780, PMID:21873635 RGD:13792537 NCBI chr 8:75,625,147...75,666,959
Ensembl chr 8:75,625,174...75,666,866
JBrowse link
G Snapc1 small nuclear RNA activating complex, polypeptide 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:96,871,675...96,893,422
Ensembl chr 6:96,871,625...96,893,444
JBrowse link
G Snapc3 small nuclear RNA activating complex, polypeptide 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:101,526,591...101,554,015
Ensembl chr 5:101,526,551...101,553,489
JBrowse link
G Snapc4 small nuclear RNA activating complex, polypeptide 4 ISO (PMID:9418884) RGD PMID:9418884 NCBI chr 3:3,808,596...3,827,425
Ensembl chr 3:3,809,407...3,824,284
JBrowse link
G Snapc5 small nuclear RNA activating complex, polypeptide 5 ISO (PMID:9732265) RGD PMID:9732265 NCBI chr 8:69,127,708...69,131,539
Ensembl chr 8:69,127,708...69,131,539
JBrowse link
G Zc3h8 zinc finger CCCH type containing 8 ISO (PMID:23932780) RGD PMID:23932780 NCBI chr 3:121,471,836...121,488,528
Ensembl chr 3:121,471,810...121,488,540
JBrowse link
termination of RNA polymerase III transcription term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Polr3k RNA polymerase III subunit K IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:177,374,812...177,379,009
Ensembl chr 3:177,374,812...177,379,008
JBrowse link
transcription initiation from RNA polymerase III promoter term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crcp CGRP receptor component IEA
IBA
GO_REF:0000002
PMID:21873635
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr12:30,125,237...30,160,857
Ensembl chr12:30,125,168...30,180,115
JBrowse link
G Gtf3c1 general transcription factor IIIC subunit 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:197,032,473...197,098,676
Ensembl chr 1:197,032,474...197,098,649
JBrowse link
G Gtf3c5 general transcription factor IIIC subunit 5 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:7,144,354...7,164,678
Ensembl chr 3:7,144,250...7,164,654
JBrowse link
G Polr3h RNA polymerase III subunit H IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:123,146,248...123,156,558
Ensembl chr 7:123,146,249...123,156,558
JBrowse link
G Snapc5 small nuclear RNA activating complex, polypeptide 5 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:69,127,708...69,131,539
Ensembl chr 8:69,127,708...69,131,539
JBrowse link
tRNA transcription by RNA polymerase III term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07006025.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:214,015,219...214,024,153 JBrowse link
G AABR07042789.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr19:8,943,753...8,943,956 JBrowse link
G AC109542.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:214,452,127...214,455,039 JBrowse link
G Polr2l-ps1 polymerase (RNA) II (DNA directed) polypeptide L, pseudogene 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:8,943,599...8,943,966 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    metabolic process 12256
      organic substance metabolic process 11636
        macromolecule metabolic process 10081
          gene expression 6295
            transcription, DNA-templated 3419
              transcription by RNA polymerase III 41
                5S class rRNA transcription by RNA polymerase III 1
                negative regulation of transcription by RNA polymerase III + 3
                positive regulation of transcription by RNA polymerase III 11
                promoter clearance from RNA polymerase III promoter 0
                regulation of transcription by RNA polymerase III + 17
                snRNA transcription by RNA polymerase III 8
                snoRNA transcription by RNA polymerase III 0
                tRNA transcription by RNA polymerase III 4
                termination of RNA polymerase III transcription 1
                transcription elongation from RNA polymerase III promoter + 0
                transcription initiation from RNA polymerase III promoter + 7
Path 2
Term Annotations click to browse term
  biological_process 20014
    metabolic process 12256
      organic substance metabolic process 11636
        organic cyclic compound metabolic process 5931
          nucleobase-containing compound metabolic process 5483
            nucleic acid metabolic process 4980
              RNA metabolic process 4470
                RNA biosynthetic process 3478
                  nucleic acid-templated transcription 3464
                    transcription, DNA-templated 3419
                      transcription by RNA polymerase III 41
                        5S class rRNA transcription by RNA polymerase III 1
                        negative regulation of transcription by RNA polymerase III + 3
                        positive regulation of transcription by RNA polymerase III 11
                        promoter clearance from RNA polymerase III promoter 0
                        regulation of transcription by RNA polymerase III + 17
                        snRNA transcription by RNA polymerase III 8
                        snoRNA transcription by RNA polymerase III 0
                        tRNA transcription by RNA polymerase III 4
                        termination of RNA polymerase III transcription 1
                        transcription elongation from RNA polymerase III promoter + 0
                        transcription initiation from RNA polymerase III promoter + 7
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.