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ONTOLOGY REPORT - ANNOTATIONS


Term:RNA processing
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Accession:GO:0006396 term browser browse the term
Definition:Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
Synonyms:alt_id: GO:0006394
 xref: Wikipedia:Post-transcriptional_modification


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RNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ADARB1 adenosine deaminase RNA specific B1 JBrowse link 21 44,663,136 44,816,756 RGD:9068941
G DDX54 DEAD-box helicase 54 JBrowse link 12 114,144,659 114,173,129 RGD:9068941
G DICER1 dicer 1, ribonuclease III JBrowse link 14 95,036,385 95,107,940 RGD:9068941
G ELAVL4 ELAV like RNA binding protein 4 JBrowse link 1 50,795,037 50,951,058 RGD:9068941
G RNGTT RNA guanylyltransferase and 5'-phosphatase JBrowse link 6 89,761,712 90,118,184 RGD:9068941
G WDHD1 WD repeat and HMG-box DNA binding protein 1 JBrowse link 14 53,805,148 53,890,034 RGD:9068941
7-methylguanosine cap hypermethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TGS1 trimethylguanosine synthase 1 JBrowse link 8 49,585,920 49,637,832 RGD:9068941
7-methylguanosine mRNA capping term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CMTR1 cap methyltransferase 1 JBrowse link 6 38,190,358 38,240,345 RGD:9068941
G CMTR2 cap methyltransferase 2 JBrowse link 16 71,114,691 71,121,996 RGD:9068941
G NCBP1 nuclear cap binding protein subunit 1 JBrowse link 9 96,845,422 96,885,624 RGD:9068941
G RAMAC RNA guanine-7 methyltransferase activating subunit JBrowse link 15 80,876,484 80,881,337 RGD:9068941
G RNGTT RNA guanylyltransferase and 5'-phosphatase JBrowse link 6 89,761,712 90,118,184 RGD:9068941
G RNMT RNA guanine-7 methyltransferase JBrowse link 18 2,729,921 2,767,279 RGD:9068941
alternative mRNA splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CDK13 cyclin dependent kinase 13 JBrowse link 7 44,177,940 44,324,319 RGD:9068941
G CELF4 CUGBP Elav-like family member 4 JBrowse link 18 34,052,355 34,374,624 RGD:9068941
G DDX17 DEAD-box helicase 17 JBrowse link 22 37,218,884 37,241,430 RGD:9068941
G DDX5 DEAD-box helicase 5 JBrowse link 17 63,689,078 63,696,493 RGD:9068941
G DHX9 DExH-box helicase 9 JBrowse link 1 162,006,822 162,055,833 RGD:9068941
G ESRP1 epithelial splicing regulatory protein 1 JBrowse link 8 93,202,915 93,532,172 RGD:9068941
G ESRP2 epithelial splicing regulatory protein 2 JBrowse link 16 67,995,763 68,005,823 RGD:9068941
G HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 JBrowse link 12 35,182,164 35,188,651 RGD:9068941
G HNRNPM heterogeneous nuclear ribonucleoprotein M JBrowse link 19 8,579,206 8,624,029 RGD:9068941
G INSR insulin receptor JBrowse link 19 7,255,444 7,411,916 RGD:9068941
G KDM1A lysine demethylase 1A JBrowse link 1 23,153,066 23,217,693 RGD:9068941
G MBNL1 muscleblind like splicing regulator 1 JBrowse link 3 156,858,039 157,057,239 RGD:9068941
G PQBP1 polyglutamine binding protein 1 JBrowse link X 49,046,351 49,058,587 RGD:9068941
G RBM17 RNA binding motif protein 17 JBrowse link 10 6,120,488 6,140,085 RGD:9068941
G RSRC1 arginine and serine rich coiled-coil 1 JBrowse link 3 163,203,152 163,561,997 RGD:9068941
G SCNM1 sodium channel modifier 1 JBrowse link 1 130,163,855 130,166,728 RGD:9068941
G SFPQ splicing factor proline and glutamine rich JBrowse link 1 35,624,862 35,641,551 RGD:9068941
G SFSWAP splicing factor SWAP JBrowse link 12 133,793,149 133,881,150 RGD:9068941
G SLU7 SLU7 homolog, splicing factor JBrowse link 5 162,486,743 162,504,316 RGD:9068941
G SRSF1 serine and arginine rich splicing factor 1 JBrowse link 17 56,937,295 56,944,874 RGD:9068941
G SRSF6 serine and arginine rich splicing factor 6 JBrowse link 20 40,888,396 40,892,152 RGD:9068941
box C/D snoRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LARP7 La ribonucleoprotein 7, transcriptional regulator JBrowse link 4 115,690,359 115,711,263 RGD:9068941
box H/ACA snoRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PARN poly(A)-specific ribonuclease JBrowse link 16 14,787,881 14,977,786 RGD:9068941
cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BOP1 BOP1 ribosomal biogenesis factor JBrowse link 8 144,015,518 144,043,278 RGD:9068941
G NPM1 nucleophosmin 1 JBrowse link 5 173,490,197 173,510,657 RGD:9068941
conversion of ds siRNA to ss siRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DICER1 dicer 1, ribonuclease III JBrowse link 14 95,036,385 95,107,940 RGD:9068941
conversion of ds siRNA to ss siRNA involved in RNA interference term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DICER1 dicer 1, ribonuclease III JBrowse link 14 95,036,385 95,107,940 RGD:9068941
endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FCF1 FCF1 rRNA-processing protein JBrowse link 14 74,112,199 74,134,008 RGD:9068941
G RCL1 RNA terminal phosphate cyclase like 1 JBrowse link 9 4,813,750 4,881,423 RGD:9068941
G UTP23 UTP23 small subunit processome component JBrowse link 8 115,984,355 115,990,708 RGD:9068941
endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FCF1 FCF1 rRNA-processing protein JBrowse link 14 74,112,199 74,134,008 RGD:9068941
G RCL1 RNA terminal phosphate cyclase like 1 JBrowse link 9 4,813,750 4,881,423 RGD:9068941
enzyme-directed rRNA pseudouridine synthesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DKC1 dyskerin pseudouridine synthase 1 JBrowse link X 154,084,412 154,098,475 RGD:9068941
G TSR3 TSR3 ribosome maturation factor JBrowse link 16 1,404,730 1,406,976 RGD:9068941
maturation of 5.8S rRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G C1D C1D nuclear receptor corepressor JBrowse link 2A 69,218,972 69,239,781 RGD:9068941
G EXOSC10 exosome component 10 JBrowse link 1 11,050,727 11,087,241 RGD:9068941
G MPHOSPH6 M-phase phosphoprotein 6 JBrowse link 16 82,174,049 82,195,669 RGD:9068941
G MTREX Mtr4 exosome RNA helicase JBrowse link 5 60,227,431 60,345,303 RGD:9068941
G NOL9 nucleolar protein 9 JBrowse link 1 6,541,712 6,571,463 RGD:9068941
G PRKDC protein kinase, DNA-activated, catalytic subunit JBrowse link 8 41,593,022 41,778,299 RGD:9068941
maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PES1 pescadillo ribosomal biogenesis factor 1 JBrowse link 22 29,405,669 29,420,974 RGD:9068941
G WDR12 WD repeat domain 12 JBrowse link 2B 208,260,696 208,292,604 RGD:9068941
maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BOP1 BOP1 ribosomal biogenesis factor JBrowse link 8 144,015,518 144,043,278 RGD:9068941
G GTPBP4 GTP binding protein 4 JBrowse link 10 1,071,809 1,103,527 RGD:9068941
G PES1 pescadillo ribosomal biogenesis factor 1 JBrowse link 22 29,405,669 29,420,974 RGD:9068941
G WDR12 WD repeat domain 12 JBrowse link 2B 208,260,696 208,292,604 RGD:9068941
maturation of SSU-rRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NOL11 nucleolar protein 11 JBrowse link 17 66,849,998 66,875,775 RGD:9068941
G RIOK1 RIO kinase 1 JBrowse link 6 7,496,461 7,524,216 RGD:9068941
G RIOK2 RIO kinase 2 JBrowse link 5 98,026,237 98,048,360 RGD:9068941
G RIOK3 RIO kinase 3 JBrowse link 18 20,331,222 20,360,825 RGD:9068941
G RPS19 ribosomal protein S19 JBrowse link 19 47,254,157 47,264,953 RGD:9068941
G UTP4 UTP4 small subunit processome component JBrowse link 16 68,891,923 68,927,421 RGD:9068941
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BYSL bystin like JBrowse link 6 42,806,531 42,818,684 RGD:9068941
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit JBrowse link 19 50,897,004 50,915,849 RGD:9068941
G GTF2H5 general transcription factor IIH subunit 5 JBrowse link 6 158,126,665 158,160,838 RGD:9068941
G RPS19 ribosomal protein S19 JBrowse link 19 47,254,157 47,264,953 RGD:9068941
mitochondrial mRNA polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PNPT1 polyribonucleotide nucleotidyltransferase 1 JBrowse link 2A 56,931,110 56,986,408 RGD:9068941
mitochondrial mRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TBRG4 transforming growth factor beta regulator 4 JBrowse link 7 45,879,666 45,891,651 RGD:9068941
mitochondrial RNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PNPT1 polyribonucleotide nucleotidyltransferase 1 JBrowse link 2A 56,931,110 56,986,408 RGD:9068941
G SUPV3L1 Suv3 like RNA helicase JBrowse link 10 68,180,665 68,209,538 RGD:9068941
mitochondrial RNA 5'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PNPT1 polyribonucleotide nucleotidyltransferase 1 JBrowse link 2A 56,931,110 56,986,408 RGD:9068941
G TRMT10C tRNA methyltransferase 10C, mitochondrial RNase P subunit JBrowse link 3 105,350,939 105,355,548 RGD:9068941
mitochondrial RNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FASTKD5 FAST kinase domains 5 JBrowse link 20 2,995,348 3,008,857 RGD:9068941
mitochondrial tRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HSD17B10 hydroxysteroid 17-beta dehydrogenase 10 JBrowse link X 53,754,164 53,757,643 RGD:9068941
G TRMT10C tRNA methyltransferase 10C, mitochondrial RNase P subunit JBrowse link 3 105,350,939 105,355,548 RGD:9068941
G TRNT1 tRNA nucleotidyl transferase 1 JBrowse link 3 3,173,889 3,198,042 RGD:9068941
mitochondrial tRNA 3'-trailer cleavage, endonucleolytic term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ELAC2 elaC ribonuclease Z 2 JBrowse link 17 43,331,453 43,357,469 RGD:9068941
mitochondrial tRNA 5'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HSD17B10 hydroxysteroid 17-beta dehydrogenase 10 JBrowse link X 53,754,164 53,757,643 RGD:9068941
G PRORP protein only RNase P catalytic subunit JBrowse link 14 34,056,234 34,209,657 RGD:9068941
G TRMT10C tRNA methyltransferase 10C, mitochondrial RNase P subunit JBrowse link 3 105,350,939 105,355,548 RGD:9068941
mitochondrial tRNA methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HSD17B10 hydroxysteroid 17-beta dehydrogenase 10 JBrowse link X 53,754,164 53,757,643 RGD:9068941
G TRMT5 tRNA methyltransferase 5 JBrowse link 14 59,836,893 59,847,145 RGD:9068941
G TRMT61B tRNA methyltransferase 61B JBrowse link 2A 28,935,376 28,955,575 RGD:9068941
mitochondrial tRNA modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CDK5RAP1 CDK5 regulatory subunit associated protein 1 JBrowse link 20 30,762,967 30,804,237 RGD:9068941
mitochondrial tRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TRMT10C tRNA methyltransferase 10C, mitochondrial RNase P subunit JBrowse link 3 105,350,939 105,355,548 RGD:9068941
mitochondrial tRNA wobble uridine modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G MTO1 mitochondrial tRNA translation optimization 1 JBrowse link 6 74,570,849 74,612,567 RGD:9068941
mRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ZC3H3 zinc finger CCCH-type containing 3 JBrowse link 8 143,203,325 143,309,829 RGD:9068941
mRNA 3'-end processing by stem-loop binding and cleavage term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CPSF2 cleavage and polyadenylation specific factor 2 JBrowse link 14 92,099,278 92,139,902 RGD:9068941
G CPSF3 cleavage and polyadenylation specific factor 3 JBrowse link 2A 9,576,871 9,626,202 RGD:9068941
G LSM11 LSM11, U7 small nuclear RNA associated JBrowse link 5 159,749,818 159,767,000 RGD:9068941
G SLBP stem-loop binding protein JBrowse link 4 1,744,612 1,772,962 RGD:9068941
G ZNF473 zinc finger protein 473 JBrowse link 19 55,953,855 55,976,515 RGD:9068941
mRNA 3'-splice site recognition term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SLU7 SLU7 homolog, splicing factor JBrowse link 5 162,486,743 162,504,316 RGD:9068941
mRNA 5'-splice site recognition term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LOC100979736 PC4 and SFRS1-interacting protein JBrowse link 9 15,784,740 15,831,449 RGD:9068941
G SFSWAP splicing factor SWAP JBrowse link 12 133,793,149 133,881,150 RGD:9068941
G SRSF1 serine and arginine rich splicing factor 1 JBrowse link 17 56,937,295 56,944,874 RGD:9068941
G SRSF12 serine and arginine rich splicing factor 12 JBrowse link 6 90,244,345 90,258,075 RGD:9068941
mRNA alternative polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CPSF6 cleavage and polyadenylation specific factor 6 JBrowse link 12 69,537,904 69,562,570 RGD:9068941
G CPSF7 cleavage and polyadenylation specific factor 7 JBrowse link 11 60,065,832 60,092,720 RGD:9068941
G NUDT21 nudix hydrolase 21 JBrowse link 16 55,847,736 55,870,008 RGD:9068941
G VIRMA vir like m6A methyltransferase associated JBrowse link 8 93,054,313 93,118,285 RGD:9068941
mRNA cis splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DCPS decapping enzyme, scavenger JBrowse link 11 125,028,350 125,073,044 RGD:9068941
G NCBP2 nuclear cap binding protein subunit 2 JBrowse link 3 204,214,282 204,221,446 RGD:9068941
G RBM22 RNA binding motif protein 22 JBrowse link 5 152,118,945 152,129,261 RGD:9068941
G WBP4 WW domain binding protein 4 JBrowse link 13 40,852,879 40,875,182 RGD:9068941
mRNA cleavage involved in mRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ERN1 endoplasmic reticulum to nucleus signaling 1 JBrowse link 17 63,226,949 63,317,825 RGD:9068941
mRNA polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AHCYL1 adenosylhomocysteinase like 1 JBrowse link 1 127,672,978 127,682,007 RGD:9068941
G APLP1 amyloid beta precursor like protein 1 JBrowse link 19 41,534,776 41,545,908 RGD:9068941
G APP amyloid beta precursor protein JBrowse link 21 25,683,236 25,995,262 RGD:9068941
G CDC73 cell division cycle 73 JBrowse link 1 172,875,365 173,004,942 RGD:9068941
G CPSF1 cleavage and polyadenylation specific factor 1 JBrowse link 8 144,149,253 144,166,183 RGD:9068941
G MTPAP mitochondrial poly(A) polymerase JBrowse link 10 30,818,591 30,854,542 RGD:9068941
G PABPC1L poly(A) binding protein cytoplasmic 1 like JBrowse link 20 42,333,592 42,362,510 RGD:9068941
G PAF1 PAF1 homolog, Paf1/RNA polymerase II complex component JBrowse link 19 45,031,819 45,037,169 RGD:9068941
G PAPOLA poly(A) polymerase alpha JBrowse link 14 96,454,378 96,518,038 RGD:9068941
G SSU72 SSU72 homolog, RNA polymerase II CTD phosphatase JBrowse link 1 1,463,184 1,494,797 RGD:9068941
G SYMPK symplekin JBrowse link 19 51,361,502 51,409,167 RGD:9068941
G TENT4B terminal nucleotidyltransferase 4B JBrowse link 16 49,299,504 49,376,175 RGD:9068941
G TUT1 terminal uridylyl transferase 1, U6 snRNA-specific JBrowse link 11 61,287,375 61,303,784 RGD:9068941
mRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AKAP8L A-kinase anchoring protein 8 like JBrowse link 19 15,897,896 15,936,684 RGD:9068941
G ALKBH5 alkB homolog 5, RNA demethylase JBrowse link 17 38,003,362 38,030,715 RGD:9068941
G CPSF6 cleavage and polyadenylation specific factor 6 JBrowse link 12 69,537,904 69,562,570 RGD:9068941
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 JBrowse link 7 26,439,245 26,450,732 RGD:9068941
G KHDRBS3 KH RNA binding domain containing, signal transduction associated 3 JBrowse link 8 135,084,505 135,282,770 RGD:9068941
G LOC100992822 histone H2A-Bbd type 2/3 JBrowse link X 154,205,452 154,206,043 RGD:9068941
G LOC117977735 histone H2A-Bbd type 2/3 RGD:9068941
G METTL3 methyltransferase like 3 JBrowse link 14 20,392,665 20,405,906 RGD:9068941
G NUDT21 nudix hydrolase 21 JBrowse link 16 55,847,736 55,870,008 RGD:9068941
G PHRF1 PHD and ring finger domains 1 JBrowse link 11 614,686 647,496 RGD:9068941
G PRKACA protein kinase cAMP-activated catalytic subunit alpha JBrowse link 19 14,385,183 14,406,205 RGD:9068941
G PRMT9 protein arginine methyltransferase 9 JBrowse link 4 151,631,498 151,677,866 RGD:9068941
G PTBP1 polypyrimidine tract binding protein 1 JBrowse link 19 766,372 781,888 RGD:9068941
G QKI QKI, KH domain containing RNA binding JBrowse link 6 166,398,884 166,517,389 RGD:9068941
G SCAF1 SR-related CTD associated factor 1 JBrowse link 19 55,574,124 55,592,698 RGD:9068941
G SCAF4 SR-related CTD associated factor 4 JBrowse link 21 31,421,160 31,482,543 RGD:9068941
G SCAF8 SR-related CTD associated factor 8 JBrowse link 6 158,514,265 158,768,718 RGD:9068941
G SF3A1 splicing factor 3a subunit 1 JBrowse link 22 29,171,654 29,194,882 RGD:9068941
G SF3A2 splicing factor 3a subunit 2 JBrowse link 19 2,219,326 2,231,343 RGD:9068941
G SF3A3 splicing factor 3a subunit 3 JBrowse link 1 38,578,225 38,612,009 RGD:9068941
G SON SON DNA and RNA binding protein JBrowse link 21 33,282,691 33,317,063 RGD:9068941
G SRRM4 serine/arginine repetitive matrix 4 JBrowse link 12 119,939,573 120,117,175 RGD:9068941
G TCERG1 transcription elongation regulator 1 JBrowse link 5 147,908,980 147,972,277 RGD:9068941
mRNA splice site selection term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CELF1 CUGBP Elav-like family member 1 JBrowse link 11 47,967,831 48,054,437 RGD:9068941
G CELF2 CUGBP Elav-like family member 2 JBrowse link 10 10,465,313 11,330,504 RGD:9068941
G CELF4 CUGBP Elav-like family member 4 JBrowse link 18 34,052,355 34,374,624 RGD:9068941
G KHDC4 KH domain containing 4, pre-mRNA splicing factor JBrowse link 1 135,076,831 135,097,760 RGD:9068941
G MBNL1 muscleblind like splicing regulator 1 JBrowse link 3 156,858,039 157,057,239 RGD:9068941
G NOL3 nucleolar protein 3 JBrowse link 16 66,904,738 66,909,956 RGD:9068941
G PTBP2 polypyrimidine tract binding protein 2 JBrowse link 1 98,105,913 98,196,729 RGD:9068941
G RBMX RNA binding motif protein X-linked JBrowse link X 136,264,406 136,275,360 RGD:9068941
G RBMXL1 RBMX like 1 RGD:9068941
G SETX senataxin JBrowse link 9 132,016,513 132,109,665 RGD:9068941
G SRSF10 serine and arginine rich splicing factor 10 JBrowse link 1 24,149,423 24,165,057 RGD:9068941
G SRSF6 serine and arginine rich splicing factor 6 JBrowse link 20 40,888,396 40,892,152 RGD:9068941
G YTHDC1 YTH domain containing 1 JBrowse link 4 62,095,953 62,132,609 RGD:9068941
mRNA splicing, via endonucleolytic cleavage and ligation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ERN1 endoplasmic reticulum to nucleus signaling 1 JBrowse link 17 63,226,949 63,317,825 RGD:9068941
mRNA splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AQR aquarius intron-binding spliceosomal factor JBrowse link 15 32,034,897 32,149,157 RGD:9068941
G BCAS2 BCAS2 pre-mRNA processing factor JBrowse link 1 123,024,910 123,039,073 RGD:9068941
G BUD13 BUD13 homolog JBrowse link 11 115,517,647 115,545,098 RGD:9068941
G BUD31 BUD31 homolog JBrowse link 7 104,884,088 104,894,865 RGD:9068941
G CASC3 CASC3 exon junction complex subunit JBrowse link 17 17,339,060 17,370,076 RGD:9068941
G CDC40 cell division cycle 40 JBrowse link 6 112,058,835 112,108,985 RGD:9068941
G CDC5L cell division cycle 5 like JBrowse link 6 45,265,845 45,326,392 RGD:9068941
G CRNKL1 crooked neck pre-mRNA splicing factor 1 JBrowse link 20 19,957,545 19,975,809 RGD:9068941
G CWC15 CWC15 spliceosome associated protein homolog JBrowse link 11 93,499,411 93,509,895 RGD:9068941
G CWC22 CWC22 spliceosome associated protein homolog JBrowse link 2B 184,901,707 184,963,884 RGD:9068941
G CWC25 CWC25 spliceosome associated protein homolog JBrowse link 17 18,719,907 18,745,213 RGD:9068941
G DBR1 debranching RNA lariats 1 JBrowse link 3 142,639,712 142,653,016 RGD:9068941
G DDX39A DExD-box helicase 39A JBrowse link 19 14,816,362 14,826,873 RGD:9068941
G DDX39B DExD-box helicase 39B JBrowse link 6 32,081,210 32,093,135 RGD:9068941
G DDX41 DEAD-box helicase 41 JBrowse link 5 179,874,281 179,880,685 RGD:9068941
G DHX16 DEAH-box helicase 16 JBrowse link 6 31,267,669 31,287,435 RGD:9068941
G DHX38 DEAH-box helicase 38 JBrowse link 16 71,955,021 71,974,199 RGD:9068941
G DHX8 DEAH-box helicase 8 JBrowse link 17 14,117,203 14,159,825 RGD:9068941
G EFTUD2 elongation factor Tu GTP binding domain containing 2 JBrowse link 17 12,595,715 12,644,147 RGD:9068941
G EIF4A3 eukaryotic translation initiation factor 4A3 RGD:9068941
G GPKOW G-patch domain and KOW motifs JBrowse link X 49,267,657 49,278,495 RGD:9068941
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 JBrowse link 7 26,439,245 26,450,732 RGD:9068941
G HNRNPC heterogeneous nuclear ribonucleoprotein C JBrowse link 14 20,103,594 20,163,824 RGD:9068941
G IK IK cytokine JBrowse link 5 142,129,130 142,143,393 RGD:9068941
G ISY1 ISY1 splicing factor homolog JBrowse link 3 133,545,726 133,575,974 RGD:9068941
G LSM2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 6 32,344,669 32,354,630 RGD:9068941
G LSM3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 3 14,437,497 14,456,727 RGD:9068941
G LSM4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 19 18,757,390 18,773,812 RGD:9068941
G LSM5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated RGD:9068941
G LSM6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 4 150,171,597 150,185,947 RGD:9068941
G LSM7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 19 2,302,280 2,309,344 RGD:9068941
G LSM8 LSM8 homolog, U6 small nuclear RNA associated JBrowse link 7 122,844,848 122,856,577 RGD:9068941
G MAGOHB mago homolog B, exon junction complex subunit JBrowse link 12 10,898,453 10,906,029 RGD:9068941
G METTL14 methyltransferase like 14 JBrowse link 4 121,431,026 121,458,392 RGD:9068941
G METTL3 methyltransferase like 3 JBrowse link 14 20,392,665 20,405,906 RGD:9068941
G MFAP1 microfibril associated protein 1 JBrowse link 15 40,855,801 40,875,608 RGD:9068941
G NOVA1 NOVA alternative splicing regulator 1 JBrowse link 14 25,314,077 25,466,715 RGD:9068941
G PHF5A PHD finger protein 5A JBrowse link 22 40,441,275 40,450,174 RGD:9068941
G PLRG1 pleiotropic regulator 1 JBrowse link 4 158,719,568 158,735,103 RGD:9068941
G PPIE peptidylprolyl isomerase E JBrowse link 1 40,355,598 40,373,495 RGD:9068941
G PPIL1 peptidylprolyl isomerase like 1 JBrowse link 6 37,612,722 37,632,942 RGD:9068941
G PRPF19 pre-mRNA processing factor 19 JBrowse link 11 59,594,508 59,610,544 RGD:9068941
G PRPF3 pre-mRNA processing factor 3 JBrowse link 1 129,317,223 129,348,430 RGD:9068941
G PRPF31 pre-mRNA processing factor 31 JBrowse link 19 59,891,070 59,907,159 RGD:9068941
G PRPF38A pre-mRNA processing factor 38A JBrowse link 1 53,273,712 53,287,459 RGD:9068941
G PRPF4 pre-mRNA processing factor 4 JBrowse link 9 112,745,455 112,763,725 RGD:9068941
G PRPF6 pre-mRNA processing factor 6 JBrowse link 20 61,899,076 61,948,088 RGD:9068941
G PRPF8 pre-mRNA processing factor 8 JBrowse link 17 1,532,579 1,565,254 RGD:9068941
G RBM8A RNA binding motif protein 8A JBrowse link 1 113,834,110 113,839,429 RGD:9068941
G RBMX2 RNA binding motif protein X-linked 2 JBrowse link X 129,820,864 129,831,902 RGD:9068941
G RNF113A ring finger protein 113A JBrowse link X 119,328,861 119,330,150 RGD:9068941
G RSRC1 arginine and serine rich coiled-coil 1 JBrowse link 3 163,203,152 163,561,997 RGD:9068941
G SART1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP JBrowse link 11 64,654,470 64,670,720 RGD:9068941
G SART3 spliceosome associated factor 3, U4/U6 recycling protein JBrowse link 12 109,490,261 109,529,091 RGD:9068941
G SF3A1 splicing factor 3a subunit 1 JBrowse link 22 29,171,654 29,194,882 RGD:9068941
G SF3A2 splicing factor 3a subunit 2 JBrowse link 19 2,219,326 2,231,343 RGD:9068941
G SF3A3 splicing factor 3a subunit 3 JBrowse link 1 38,578,225 38,612,009 RGD:9068941
G SF3B1 splicing factor 3b subunit 1 JBrowse link 2B 202,530,200 202,573,346 RGD:9068941
G SF3B2 splicing factor 3b subunit 2 JBrowse link 11 64,743,629 64,759,772 RGD:9068941
G SF3B3 splicing factor 3b subunit 3 JBrowse link 16 70,361,068 70,409,679 RGD:9068941
G SF3B4 splicing factor 3b subunit 4 JBrowse link 1 128,924,317 128,929,610 RGD:9068941
G SF3B5 splicing factor 3b subunit 5 JBrowse link 6 146,593,845 146,594,592 RGD:9068941
G SF3B6 splicing factor 3b subunit 6 JBrowse link 2A 24,162,976 24,172,111 RGD:9068941
G SMU1 SMU1 DNA replication regulator and spliceosomal factor JBrowse link 9 33,627,765 33,659,530 RGD:9068941
G SNIP1 Smad nuclear interacting protein 1 JBrowse link 1 38,156,936 38,176,803 RGD:9068941
G SNRNP200 small nuclear ribonucleoprotein U5 subunit 200 JBrowse link 2A 97,197,137 97,228,511 RGD:9068941
G SNRNP70 small nuclear ribonucleoprotein U1 subunit 70 JBrowse link 19 55,021,402 55,044,351 RGD:9068941
G SNRPA1 small nuclear ribonucleoprotein polypeptide A' JBrowse link 15 99,289,668 99,303,839 RGD:9068941
G SNRPB small nuclear ribonucleoprotein polypeptides B and B1 JBrowse link 20 2,335,499 2,344,763 RGD:9068941
G SNRPB2 small nuclear ribonucleoprotein polypeptide B2 JBrowse link 20 16,670,823 16,682,418 RGD:9068941
G SNRPC small nuclear ribonucleoprotein polypeptide C JBrowse link 6 35,421,467 35,437,622 RGD:9068941
G SNRPD1 small nuclear ribonucleoprotein D1 polypeptide JBrowse link 18 18,488,929 18,506,284 RGD:9068941
G SNRPD2 small nuclear ribonucleoprotein D2 polypeptide JBrowse link 19 51,230,822 51,235,661 RGD:9068941
G SNRPD3 small nuclear ribonucleoprotein D3 polypeptide JBrowse link 22 22,227,328 22,255,511 RGD:9068941
G SNRPE small nuclear ribonucleoprotein polypeptide E JBrowse link 1 183,755,378 183,764,937 RGD:9068941
G SNRPF small nuclear ribonucleoprotein polypeptide F JBrowse link 12 96,841,638 96,848,864 RGD:9068941
G SNRPG small nuclear ribonucleoprotein polypeptide G JBrowse link 2A 71,451,219 71,463,884 RGD:9068941
G SNU13 small nuclear ribonucleoprotein 13 JBrowse link 22 40,653,338 40,668,216 RGD:9068941
G SNW1 SNW domain containing 1 JBrowse link 14 77,472,381 77,517,314 RGD:9068941
G SRRM2 serine/arginine repetitive matrix 2 JBrowse link 16 2,865,810 2,884,902 RGD:9068941
G SRSF10 serine and arginine rich splicing factor 10 JBrowse link 1 24,149,423 24,165,057 RGD:9068941
G SYF2 SYF2 pre-mRNA splicing factor JBrowse link 1 25,397,241 25,406,817 RGD:9068941
G TRA2A transformer 2 alpha homolog JBrowse link 7 23,791,748 23,820,124 RGD:9068941
G TRA2B transformer 2 beta homolog JBrowse link 3 191,414,777 191,436,103 RGD:9068941
G TXNL4A thioredoxin like 4A JBrowse link 18 76,937,460 76,952,428 RGD:9068941
G U2AF2 U2 small nuclear RNA auxiliary factor 2 JBrowse link 19 61,386,062 61,406,582 RGD:9068941
G USP39 ubiquitin specific peptidase 39 JBrowse link 2A 87,219,121 87,251,931 RGD:9068941
G USP49 ubiquitin specific peptidase 49 JBrowse link 6 42,678,680 42,781,748 RGD:9068941
G WBP4 WW domain binding protein 4 JBrowse link 13 40,852,879 40,875,182 RGD:9068941
G WDR83 WD repeat domain 83 JBrowse link 19 12,976,952 12,983,221 RGD:9068941
G XAB2 XPA binding protein 2 JBrowse link 19 7,764,264 7,774,305 RGD:9068941
G YTHDC1 YTH domain containing 1 JBrowse link 4 62,095,953 62,132,609 RGD:9068941
G ZMAT2 zinc finger matrin-type 2 JBrowse link 5 142,180,981 142,187,294 RGD:9068941
G ZRSR2 zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2 JBrowse link X 15,771,738 15,804,931 RGD:9068941
ncRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ZCCHC8 zinc finger CCHC-type containing 8 JBrowse link 12 124,297,279 124,325,110 RGD:9068941
negative regulation of mRNA polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CCNT1 cyclin T1 JBrowse link 12 40,906,907 40,935,392 RGD:9068941
G CDK9 cyclin dependent kinase 9 JBrowse link 9 127,580,862 127,584,936 RGD:9068941
G CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component JBrowse link 11 10,610,892 10,639,808 RGD:9068941
G NELFE negative elongation factor complex member E JBrowse link 6 32,499,538 32,506,382 RGD:9068941
G RNF20 ring finger protein 20 JBrowse link 9 100,732,240 100,761,725 RGD:9068941
G RNF40 ring finger protein 40 JBrowse link 16 31,129,324 31,142,280 RGD:9068941
G SUPT5H SPT5 homolog, DSIF elongation factor subunit JBrowse link 19 45,092,075 45,122,335 RGD:9068941
negative regulation of mRNA splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACIN1 apoptotic chromatin condensation inducer 1 JBrowse link 14 21,975,370 22,012,092 RGD:9068941
G AKR1C4 aldo-keto reductase family 1 member C4 JBrowse link 10 5,234,187 5,258,201 RGD:9068941
G C1QBP complement C1q binding protein JBrowse link 17 5,473,239 5,479,735 RGD:9068941
G CELF4 CUGBP Elav-like family member 4 JBrowse link 18 34,052,355 34,374,624 RGD:9068941
G DYRK1A dual specificity tyrosine phosphorylation regulated kinase 1A JBrowse link 21 37,092,172 37,231,916 RGD:9068941
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 JBrowse link 7 26,439,245 26,450,732 RGD:9068941
G HNRNPK heterogeneous nuclear ribonucleoprotein K JBrowse link 9 83,324,235 83,336,884 RGD:9068941
G HNRNPL heterogeneous nuclear ribonucleoprotein L JBrowse link 19 44,493,832 44,509,183 RGD:9068941
G NPM1 nucleophosmin 1 JBrowse link 5 173,490,197 173,510,657 RGD:9068941
G PCBP4 poly(rC) binding protein 4 JBrowse link 3 53,127,448 53,137,292 RGD:9068941
G PTBP1 polypyrimidine tract binding protein 1 JBrowse link 19 766,372 781,888 RGD:9068941
G PTBP3 polypyrimidine tract binding protein 3 JBrowse link 9 111,506,100 111,664,928 RGD:9068941
G RBM10 RNA binding motif protein 10 JBrowse link X 47,440,586 47,481,418 RGD:9068941
G RBM42 RNA binding motif protein 42 JBrowse link 19 41,295,079 41,303,817 RGD:9068941
G RBMXL1 RBMX like 1 RGD:9068941
G RNPS1 RNA binding protein with serine rich domain 1 JBrowse link 16 2,355,936 2,368,816 RGD:9068941
G SAP18 Sin3A associated protein 18 JBrowse link 13 20,776,818 20,785,533 RGD:9068941
G SFSWAP splicing factor SWAP JBrowse link 12 133,793,149 133,881,150 RGD:9068941
G SRSF10 serine and arginine rich splicing factor 10 JBrowse link 1 24,149,423 24,165,057 RGD:9068941
G SRSF4 serine and arginine rich splicing factor 4 JBrowse link 1 29,444,263 29,490,360 RGD:9068941
G SRSF6 serine and arginine rich splicing factor 6 JBrowse link 20 40,888,396 40,892,152 RGD:9068941
G SRSF7 serine and arginine rich splicing factor 7 JBrowse link 2A 39,536,722 39,545,562 RGD:9068941
G SRSF9 serine and arginine rich splicing factor 9 JBrowse link 12 121,417,557 121,425,708 RGD:9068941
G TRA2B transformer 2 beta homolog JBrowse link 3 191,414,777 191,436,103 RGD:9068941
G U2AF2 U2 small nuclear RNA auxiliary factor 2 JBrowse link 19 61,386,062 61,406,582 RGD:9068941
negative regulation of pre-miRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BCDIN3D BCDIN3 domain containing RNA methyltransferase JBrowse link 12 39,802,601 39,807,948 RGD:9068941
G LIN28B lin-28 homolog B JBrowse link 6 106,646,991 106,772,374 RGD:9068941
negative regulation of primary miRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G IL6 interleukin 6 JBrowse link 7 23,027,560 23,032,419 RGD:9068941
G LIN28B lin-28 homolog B JBrowse link 6 106,646,991 106,772,374 RGD:9068941
G MECP2 methyl-CpG binding protein 2 JBrowse link X 153,458,248 153,527,854 RGD:9068941
G STAT3 signal transducer and activator of transcription 3 JBrowse link 17 15,152,358 15,227,084 RGD:9068941
negative regulation of production of miRNAs involved in gene silencing by miRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ESR1 estrogen receptor 1 JBrowse link 6 154,200,521 154,635,806 RGD:9068941
G NCOR1 nuclear receptor corepressor 1 JBrowse link 2A 110,362,694 110,416,423 RGD:9068941
G NCOR2 nuclear receptor corepressor 2 JBrowse link 12 126,200,793 126,412,757 RGD:9068941
G PPP3CA protein phosphatase 3 catalytic subunit alpha JBrowse link 4 104,113,512 104,435,954 RGD:9068941
G TGFB1 transforming growth factor beta 1 JBrowse link 19 46,831,659 46,852,973 RGD:9068941
G TNF tumor necrosis factor JBrowse link 6 32,126,618 32,129,389 RGD:9068941
G TP53 tumor protein p53 JBrowse link 17 7,687,132 7,706,120 RGD:9068941
G ZC3H10 zinc finger CCCH-type containing 10 JBrowse link 12 33,042,271 33,047,463 RGD:9068941
G ZC3H12A zinc finger CCCH-type containing 12A JBrowse link 1 38,093,036 38,103,556 RGD:9068941
G ZMPSTE24 zinc metallopeptidase STE24 JBrowse link 1 40,869,076 40,912,747 RGD:9068941
negative regulation of production of siRNA involved in RNA interference term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TERT telomerase reverse transcriptase JBrowse link 5 1,300,397 1,338,241 RGD:9068941
negative regulation of RNA splicing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AKT2 AKT serine/threonine kinase 2 JBrowse link 19 45,791,043 45,846,359 RGD:9068941
G PTBP1 polypyrimidine tract binding protein 1 JBrowse link 19 766,372 781,888 RGD:9068941
G PTBP2 polypyrimidine tract binding protein 2 JBrowse link 1 98,105,913 98,196,729 RGD:9068941
G PTBP3 polypyrimidine tract binding protein 3 JBrowse link 9 111,506,100 111,664,928 RGD:9068941
G RPS13 ribosomal protein S13 JBrowse link 11 16,818,649 16,821,999 RGD:9068941
G RPS26 ribosomal protein S26 JBrowse link 12 33,119,551 33,121,920 RGD:9068941
G TMBIM6 transmembrane BAX inhibitor motif containing 6 JBrowse link 12 39,879,951 39,902,607 RGD:9068941
negative regulation of rRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G KAT2B lysine acetyltransferase 2B JBrowse link 3 20,286,080 20,399,970 RGD:9068941
G SHQ1 SHQ1, H/ACA ribonucleoprotein assembly factor JBrowse link 3 74,619,864 74,718,948 RGD:9068941
polyadenylation-dependent snoRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PARN poly(A)-specific ribonuclease JBrowse link 16 14,787,881 14,977,786 RGD:9068941
positive regulation of mRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CCNB1 cyclin B1 JBrowse link 5 46,394,362 46,405,332 RGD:9068941
G CDC73 cell division cycle 73 JBrowse link 1 172,875,365 173,004,942 RGD:9068941
G DHX36 DEAH-box helicase 36 JBrowse link 3 158,885,041 158,935,952 RGD:9068941
G NCBP1 nuclear cap binding protein subunit 1 JBrowse link 9 96,845,422 96,885,624 RGD:9068941
G NCBP2 nuclear cap binding protein subunit 2 JBrowse link 3 204,214,282 204,221,446 RGD:9068941
G PAF1 PAF1 homolog, Paf1/RNA polymerase II complex component JBrowse link 19 45,031,819 45,037,169 RGD:9068941
positive regulation of mRNA polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CPEB1 cytoplasmic polyadenylation element binding protein 1 JBrowse link 15 80,443,096 80,546,163 RGD:9068941
G CPEB3 cytoplasmic polyadenylation element binding protein 3 JBrowse link 10 92,314,573 92,505,160 RGD:9068941
G HSF1 heat shock transcription factor 1 JBrowse link 8 144,062,137 144,067,725 RGD:9068941
G NUDT21 nudix hydrolase 21 JBrowse link 16 55,847,736 55,870,008 RGD:9068941
positive regulation of mRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ADARB1 adenosine deaminase RNA specific B1 JBrowse link 21 44,663,136 44,816,756 RGD:9068941
positive regulation of mRNA splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CELF3 CUGBP Elav-like family member 3 JBrowse link 1 130,701,452 130,718,578 RGD:9068941
G CELF4 CUGBP Elav-like family member 4 JBrowse link 18 34,052,355 34,374,624 RGD:9068941
G DAZAP1 DAZ associated protein 1 JBrowse link 19 1,391,441 1,409,016 RGD:9068941
G EIF4A3 eukaryotic translation initiation factor 4A3 RGD:9068941
G HMX2 H6 family homeobox 2 RGD:9068941
G HSPA8 heat shock protein family A (Hsp70) member 8 JBrowse link 11 121,809,800 121,814,628 RGD:9068941
G LMNTD2 lamin tail domain containing 2 JBrowse link 11 588,693 594,851 RGD:9068941
G NCBP1 nuclear cap binding protein subunit 1 JBrowse link 9 96,845,422 96,885,624 RGD:9068941
G NUP98 nucleoporin 98 and 96 precursor JBrowse link 11 3,660,482 3,782,552 RGD:9068941
G OBI1 ORC ubiquitin ligase 1 JBrowse link 13 78,874,466 78,918,298 RGD:9068941
G PRDX6 peroxiredoxin 6 JBrowse link 1 152,694,606 152,706,521 RGD:9068941
G PRPF19 pre-mRNA processing factor 19 JBrowse link 11 59,594,508 59,610,544 RGD:9068941
G RBMXL1 RBMX like 1 RGD:9068941
G SF3B4 splicing factor 3b subunit 4 JBrowse link 1 128,924,317 128,929,610 RGD:9068941
G SLC39A5 solute carrier family 39 member 5 JBrowse link 12 32,929,033 32,936,826 RGD:9068941
G SNRNP70 small nuclear ribonucleoprotein U1 subunit 70 JBrowse link 19 55,021,402 55,044,351 RGD:9068941
G SNW1 SNW domain containing 1 JBrowse link 14 77,472,381 77,517,314 RGD:9068941
G STH saitohin JBrowse link 17 11,485,834 11,486,265 RGD:9068941
G THRAP3 thyroid hormone receptor associated protein 3 JBrowse link 1 36,679,221 36,742,694 RGD:9068941
G TRA2A transformer 2 alpha homolog JBrowse link 7 23,791,748 23,820,124 RGD:9068941
G TRA2B transformer 2 beta homolog JBrowse link 3 191,414,777 191,436,103 RGD:9068941
G ZFP64 ZFP64 zinc finger protein JBrowse link 20 49,548,550 49,653,429 RGD:9068941
positive regulation of production of miRNAs involved in gene silencing by miRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BMP4 bone morphogenetic protein 4 JBrowse link 14 52,821,872 52,828,781 RGD:9068941
G DDX5 DEAD-box helicase 5 JBrowse link 17 63,689,078 63,696,493 RGD:9068941
G EGFR epidermal growth factor receptor JBrowse link 7 56,048,212 56,117,642 RGD:9068941
G IL6 interleukin 6 JBrowse link 7 23,027,560 23,032,419 RGD:9068941
G LIN28A lin-28 homolog A JBrowse link 1 26,739,267 26,758,028 RGD:9068941
G LOC100977025 dual specificity mitogen-activated protein kinase kinase 2 JBrowse link 19 4,064,626 4,097,933 RGD:9068941
G MAP2K1 mitogen-activated protein kinase kinase 1 JBrowse link 15 63,613,988 63,714,928 RGD:9068941
G MYOCD myocardin JBrowse link 17 43,578,967 43,681,659 RGD:9068941
G NR2F1 nuclear receptor subfamily 2 group F member 1 JBrowse link 5 21,909,691 21,918,776 RGD:9068941
G RIPK1 receptor interacting serine/threonine kinase 1 JBrowse link 6 2,997,290 3,046,230 RGD:9068941
G TGFB1 transforming growth factor beta 1 JBrowse link 19 46,831,659 46,852,973 RGD:9068941
G TP53 tumor protein p53 JBrowse link 17 7,687,132 7,706,120 RGD:9068941
positive regulation of RNA splicing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DYRK1A dual specificity tyrosine phosphorylation regulated kinase 1A JBrowse link 21 37,092,172 37,231,916 RGD:9068941
G ERN1 endoplasmic reticulum to nucleus signaling 1 JBrowse link 17 63,226,949 63,317,825 RGD:9068941
G HABP4 hyaluronan binding protein 4 JBrowse link 9 95,640,088 95,708,956 RGD:9068941
G HNRNPK heterogeneous nuclear ribonucleoprotein K JBrowse link 9 83,324,235 83,336,884 RGD:9068941
G HNRNPLL heterogeneous nuclear ribonucleoprotein L like JBrowse link 2A 39,345,857 39,389,111 RGD:9068941
G HSPA1A heat shock protein family A (Hsp70) member 1A JBrowse link 6 32,363,499 32,366,005 RGD:9068941
G KHDRBS3 KH RNA binding domain containing, signal transduction associated 3 JBrowse link 8 135,084,505 135,282,770 RGD:9068941
G PIK3R1 phosphoinositide-3-kinase regulatory subunit 1 JBrowse link 5 47,268,477 47,350,960 RGD:9068941
G POLR2A RNA polymerase II subunit A JBrowse link 17 7,502,807 7,532,761 RGD:9068941
G RBM20 RNA binding motif protein 20 JBrowse link 10 110,767,653 110,882,909 RGD:9068941
G RBM22 RNA binding motif protein 22 JBrowse link 5 152,118,945 152,129,261 RGD:9068941
G SETX senataxin JBrowse link 9 132,016,513 132,109,665 RGD:9068941
G SLC38A2 solute carrier family 38 member 2 JBrowse link 12 43,230,007 43,244,343 RGD:9068941
G SRSF1 serine and arginine rich splicing factor 1 JBrowse link 17 56,937,295 56,944,874 RGD:9068941
G SRSF5 serine and arginine rich splicing factor 5 JBrowse link 14 69,230,730 69,236,596 RGD:9068941
G U2AF2 U2 small nuclear RNA auxiliary factor 2 JBrowse link 19 61,386,062 61,406,582 RGD:9068941
G ZPR1 ZPR1 zinc finger JBrowse link 11 115,547,951 115,557,883 RGD:9068941
positive regulation of rRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BUD23 BUD23 rRNA methyltransferase and ribosome maturation factor JBrowse link 7 80,836,518 80,851,501 RGD:9068941
G DIMT1 DIMT1 rRNA methyltransferase and ribosome maturation factor JBrowse link 5 53,234,921 53,250,082 RGD:9068941
G HEATR1 HEAT repeat containing 1 JBrowse link 1 217,109,359 217,164,794 RGD:9068941
G RIOK1 RIO kinase 1 JBrowse link 6 7,496,461 7,524,216 RGD:9068941
G RIOK2 RIO kinase 2 JBrowse link 5 98,026,237 98,048,360 RGD:9068941
G SIRT7 sirtuin 7 JBrowse link 17 82,020,077 82,026,016 RGD:9068941
G TRMT112 tRNA methyltransferase subunit 11-2 JBrowse link 11 63,018,695 63,020,086 RGD:9068941
G UTP15 UTP15 small subunit processome component JBrowse link 5 42,336,817 42,351,574 RGD:9068941
G WDR43 WD repeat domain 43 JBrowse link 2A 28,955,612 29,034,485 RGD:9068941
G WDR75 WD repeat domain 75 JBrowse link 2B 194,668,211 194,702,343 RGD:9068941
pre-miRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ADAR adenosine deaminase RNA specific JBrowse link 1 133,549,380 133,595,115 RGD:9068941
G AGO1 argonaute RISC component 1 JBrowse link 1 36,324,733 36,370,798 RGD:9068941
G AGO2 argonaute RISC catalytic component 2 JBrowse link 8 140,278,610 140,361,124 RGD:9068941
G AGO4 argonaute RISC component 4 JBrowse link 1 36,249,040 36,299,259 RGD:9068941
G DICER1 dicer 1, ribonuclease III JBrowse link 14 95,036,385 95,107,940 RGD:9068941
G DROSHA drosha ribonuclease III JBrowse link 5 84,191,596 84,322,590 RGD:9068941
G LIN28A lin-28 homolog A JBrowse link 1 26,739,267 26,758,028 RGD:9068941
G LIN28B lin-28 homolog B JBrowse link 6 106,646,991 106,772,374 RGD:9068941
G LOC100968913 argonaute RISC catalytic component 3 JBrowse link 1 36,371,926 36,497,190 RGD:9068941
G PRKRA protein activator of interferon induced protein kinase EIF2AK2 JBrowse link 2B 183,393,819 183,413,174 RGD:9068941
G TARBP2 TARBP2 subunit of RISC loading complex JBrowse link 12 36,031,822 36,038,080 RGD:9068941
G TUT4 terminal uridylyl transferase 4 JBrowse link 1 53,292,477 53,422,893 RGD:9068941
G TUT7 terminal uridylyl transferase 7 JBrowse link 9 85,489,974 85,554,745 RGD:9068941
pre-mRNA cleavage required for polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CPSF6 cleavage and polyadenylation specific factor 6 JBrowse link 12 69,537,904 69,562,570 RGD:9068941
G CPSF7 cleavage and polyadenylation specific factor 7 JBrowse link 11 60,065,832 60,092,720 RGD:9068941
G NCBP1 nuclear cap binding protein subunit 1 JBrowse link 9 96,845,422 96,885,624 RGD:9068941
G NCBP2 nuclear cap binding protein subunit 2 JBrowse link 3 204,214,282 204,221,446 RGD:9068941
G NUDT21 nudix hydrolase 21 JBrowse link 16 55,847,736 55,870,008 RGD:9068941
G TUT1 terminal uridylyl transferase 1, U6 snRNA-specific JBrowse link 11 61,287,375 61,303,784 RGD:9068941
primary miRNA methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G METTL3 methyltransferase like 3 JBrowse link 14 20,392,665 20,405,906 RGD:9068941
primary miRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DGCR8 DGCR8 microprocessor complex subunit JBrowse link 22 18,518,789 18,544,740 RGD:9068941
G DROSHA drosha ribonuclease III JBrowse link 5 84,191,596 84,322,590 RGD:9068941
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 JBrowse link 7 26,439,245 26,450,732 RGD:9068941
G METTL3 methyltransferase like 3 JBrowse link 14 20,392,665 20,405,906 RGD:9068941
G PUS10 pseudouridine synthase 10 JBrowse link 2A 62,171,933 62,252,283 RGD:9068941
G SRRT serrate, RNA effector molecule JBrowse link 7 106,296,488 106,310,257 RGD:9068941
production of miRNAs involved in gene silencing by miRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ADAR adenosine deaminase RNA specific JBrowse link 1 133,549,380 133,595,115 RGD:9068941
G AGO1 argonaute RISC component 1 JBrowse link 1 36,324,733 36,370,798 RGD:9068941
G AGO2 argonaute RISC catalytic component 2 JBrowse link 8 140,278,610 140,361,124 RGD:9068941
G AGO4 argonaute RISC component 4 JBrowse link 1 36,249,040 36,299,259 RGD:9068941
G DICER1 dicer 1, ribonuclease III JBrowse link 14 95,036,385 95,107,940 RGD:9068941
G LOC100968913 argonaute RISC catalytic component 3 JBrowse link 1 36,371,926 36,497,190 RGD:9068941
G PRKRA protein activator of interferon induced protein kinase EIF2AK2 JBrowse link 2B 183,393,819 183,413,174 RGD:9068941
G PUM1 pumilio RNA binding family member 1 JBrowse link 1 31,230,268 31,364,348 RGD:9068941
G PUM2 pumilio RNA binding family member 2 JBrowse link 2A 20,350,669 20,455,002 RGD:9068941
G RBM3 RNA binding motif protein 3 JBrowse link X 48,734,777 48,738,077 RGD:9068941
G SNIP1 Smad nuclear interacting protein 1 JBrowse link 1 38,156,936 38,176,803 RGD:9068941
G SPOUT1 SPOUT domain containing methyltransferase 1 JBrowse link 9 128,612,741 128,620,510 RGD:9068941
G TARBP2 TARBP2 subunit of RISC loading complex JBrowse link 12 36,031,822 36,038,080 RGD:9068941
G TRIM71 tripartite motif containing 71 JBrowse link 3 33,050,997 33,127,389 RGD:9068941
G ZC3H7A zinc finger CCCH-type containing 7A JBrowse link 16 11,917,628 11,948,957 RGD:9068941
G ZC3H7B zinc finger CCCH-type containing 7B JBrowse link 22 40,286,098 40,343,159 RGD:9068941
production of siRNA involved in RNA interference term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DICER1 dicer 1, ribonuclease III JBrowse link 14 95,036,385 95,107,940 RGD:9068941
G PRKRA protein activator of interferon induced protein kinase EIF2AK2 JBrowse link 2B 183,393,819 183,413,174 RGD:9068941
G TARBP2 TARBP2 subunit of RISC loading complex JBrowse link 12 36,031,822 36,038,080 RGD:9068941
G TERT telomerase reverse transcriptase JBrowse link 5 1,300,397 1,338,241 RGD:9068941
recruitment of mRNA capping enzyme to RNA polymerase II holoenzyme complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G RAMAC RNA guanine-7 methyltransferase activating subunit JBrowse link 15 80,876,484 80,881,337 RGD:9068941
regulation of alternative mRNA splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CELF3 CUGBP Elav-like family member 3 JBrowse link 1 130,701,452 130,718,578 RGD:9068941
G CELF4 CUGBP Elav-like family member 4 JBrowse link 18 34,052,355 34,374,624 RGD:9068941
G DDX17 DEAD-box helicase 17 JBrowse link 22 37,218,884 37,241,430 RGD:9068941
G DDX5 DEAD-box helicase 5 JBrowse link 17 63,689,078 63,696,493 RGD:9068941
G DYRK1A dual specificity tyrosine phosphorylation regulated kinase 1A JBrowse link 21 37,092,172 37,231,916 RGD:9068941
G FAM172A family with sequence similarity 172 member A JBrowse link 5 21,394,235 21,886,210 RGD:9068941
G FMR1 FMRP translational regulator 1 JBrowse link X 147,366,713 147,405,327 RGD:9068941
G HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 JBrowse link 12 35,182,164 35,188,651 RGD:9068941
G HNRNPL heterogeneous nuclear ribonucleoprotein L JBrowse link 19 44,493,832 44,509,183 RGD:9068941
G HNRNPU heterogeneous nuclear ribonucleoprotein U JBrowse link 1 225,830,663 225,842,031 RGD:9068941
G KHDRBS1 KH RNA binding domain containing, signal transduction associated 1 JBrowse link 1 32,312,598 32,342,587 RGD:9068941
G KHDRBS3 KH RNA binding domain containing, signal transduction associated 3 JBrowse link 8 135,084,505 135,282,770 RGD:9068941
G MAGOH mago homolog, exon junction complex subunit JBrowse link 1 54,099,198 54,111,147 RGD:9068941
G MBNL2 muscleblind like splicing regulator 2 JBrowse link 13 97,538,615 97,711,843 RGD:9068941
G MYOD1 myogenic differentiation 1 JBrowse link 11 17,456,124 17,458,690 RGD:9068941
G NSRP1 nuclear speckle splicing regulatory protein 1 JBrowse link 17 27,100,683 27,171,202 RGD:9068941
G PTBP1 polypyrimidine tract binding protein 1 JBrowse link 19 766,372 781,888 RGD:9068941
G RBFOX1 RNA binding fox-1 homolog 1 JBrowse link 16 5,415,947 7,889,215 RGD:9068941
G RBFOX2 RNA binding fox-1 homolog 2 JBrowse link 22 34,580,587 34,870,251 RGD:9068941
G RBFOX3 RNA binding fox-1 homolog 3 JBrowse link 17 78,711,056 79,099,721 RGD:9068941
G RBM11 RNA binding motif protein 11 JBrowse link 21 14,309,922 14,322,142 RGD:9068941
G RBM15 RNA binding motif protein 15 JBrowse link 1 127,320,147 127,354,537 RGD:9068941
G RBM15B RNA binding motif protein 15B JBrowse link 3 52,555,251 52,562,454 RGD:9068941
G RBM24 RNA binding motif protein 24 JBrowse link 6 17,501,025 17,513,370 RGD:9068941
G RBM25 RNA binding motif protein 25 JBrowse link 14 72,498,805 72,563,611 RGD:9068941
G RBM4 RNA binding motif protein 4 JBrowse link 11 65,319,464 65,349,183 RGD:9068941
G RBM5 RNA binding motif protein 5 JBrowse link 3 51,251,889 51,282,338 RGD:9068941
G RBM8A RNA binding motif protein 8A JBrowse link 1 113,834,110 113,839,429 RGD:9068941
G RBMX RNA binding motif protein X-linked JBrowse link X 136,264,406 136,275,360 RGD:9068941
G RBMXL1 RBMX like 1 RGD:9068941
G REST RE1 silencing transcription factor JBrowse link 4 73,556,780 73,582,419 RGD:9068941
G RNPS1 RNA binding protein with serine rich domain 1 JBrowse link 16 2,355,936 2,368,816 RGD:9068941
G SAP18 Sin3A associated protein 18 JBrowse link 13 20,776,818 20,785,533 RGD:9068941
G SRRM4 serine/arginine repetitive matrix 4 JBrowse link 12 119,939,573 120,117,175 RGD:9068941
G SRSF12 serine and arginine rich splicing factor 12 JBrowse link 6 90,244,345 90,258,075 RGD:9068941
G SRSF2 serine and arginine rich splicing factor 2 JBrowse link 17 76,375,957 76,379,258 RGD:9068941
G SRSF6 serine and arginine rich splicing factor 6 JBrowse link 20 40,888,396 40,892,152 RGD:9068941
G THRAP3 thyroid hormone receptor associated protein 3 JBrowse link 1 36,679,221 36,742,694 RGD:9068941
G TRA2B transformer 2 beta homolog JBrowse link 3 191,414,777 191,436,103 RGD:9068941
G WTAP WT1 associated protein JBrowse link 6 162,620,947 162,650,683 RGD:9068941
G ZBTB7A zinc finger and BTB domain containing 7A JBrowse link 19 4,013,208 4,037,630 RGD:9068941
regulation of mRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AHCYL1 adenosylhomocysteinase like 1 JBrowse link 1 127,672,978 127,682,007 RGD:9068941
G PAPOLA poly(A) polymerase alpha JBrowse link 14 96,454,378 96,518,038 RGD:9068941
G ZFP36L1 ZFP36 ring finger protein like 1 JBrowse link 14 68,247,341 68,255,805 RGD:9068941
regulation of mRNA polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NCBP1 nuclear cap binding protein subunit 1 JBrowse link 9 96,845,422 96,885,624 RGD:9068941
G NCBP2 nuclear cap binding protein subunit 2 JBrowse link 3 204,214,282 204,221,446 RGD:9068941
G SNRPA small nuclear ribonucleoprotein polypeptide A JBrowse link 19 46,302,198 46,316,593 RGD:9068941
G ZC3H3 zinc finger CCCH-type containing 3 JBrowse link 8 143,203,325 143,309,829 RGD:9068941
regulation of mRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CDK11B cyclin dependent kinase 11B JBrowse link 1 1,557,887 1,567,942 RGD:9068941
G DHX9 DExH-box helicase 9 JBrowse link 1 162,006,822 162,055,833 RGD:9068941
G IWS1 interacts with SUPT6H, CTD assembly factor 1 JBrowse link 2B 128,132,447 128,192,258 RGD:9068941
G NOVA1 NOVA alternative splicing regulator 1 JBrowse link 14 25,314,077 25,466,715 RGD:9068941
G PTCD2 pentatricopeptide repeat domain 2 JBrowse link 5 43,552,528 43,591,161 RGD:9068941
G SAFB scaffold attachment factor B JBrowse link 19 5,575,592 5,620,513 RGD:9068941
G SRPK1 SRSF protein kinase 1 JBrowse link 6 36,596,292 36,683,363 RGD:9068941
G SUPT6H SPT6 homolog, histone chaperone and transcription elongation factor JBrowse link 17 28,578,199 28,617,347 RGD:9068941
regulation of mRNA splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G JMJD6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase JBrowse link 17 76,356,142 76,370,117 RGD:9068941
G KHDRBS1 KH RNA binding domain containing, signal transduction associated 1 JBrowse link 1 32,312,598 32,342,587 RGD:9068941
G KHDRBS2 KH RNA binding domain containing, signal transduction associated 2 JBrowse link 6 64,550,407 65,228,125 RGD:9068941
G KHDRBS3 KH RNA binding domain containing, signal transduction associated 3 JBrowse link 8 135,084,505 135,282,770 RGD:9068941
G LARP7 La ribonucleoprotein 7, transcriptional regulator JBrowse link 4 115,690,359 115,711,263 RGD:9068941
G METTL16 methyltransferase like 16 JBrowse link 17 2,292,498 2,505,933 RGD:9068941
G RBM23 RNA binding motif protein 23 JBrowse link 14 21,817,434 21,835,661 RGD:9068941
G RBM39 RNA binding motif protein 39 JBrowse link 20 33,151,973 33,191,072 RGD:9068941
G SON SON DNA and RNA binding protein JBrowse link 21 33,282,691 33,317,063 RGD:9068941
G SRSF10 serine and arginine rich splicing factor 10 JBrowse link 1 24,149,423 24,165,057 RGD:9068941
G SRSF3 serine and arginine rich splicing factor 3 JBrowse link 6 37,352,484 37,362,196 RGD:9068941
G TIA1 TIA1 cytotoxic granule associated RNA binding protein JBrowse link 2A 71,381,348 71,420,208 RGD:9068941
G YTHDC1 YTH domain containing 1 JBrowse link 4 62,095,953 62,132,609 RGD:9068941
regulation of production of miRNAs involved in gene silencing by miRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TARBP2 TARBP2 subunit of RISC loading complex JBrowse link 12 36,031,822 36,038,080 RGD:9068941
regulation of RNA splicing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AFF2 AF4/FMR2 family member 2 JBrowse link X 147,950,886 148,446,235 RGD:9068941
G AHNAK AHNAK nucleoprotein JBrowse link 11 61,149,485 61,259,175 RGD:9068941
G AKAP17A A-kinase anchoring protein 17A JBrowse link X 1,721,734 1,730,701 RGD:9068941
G BRDT bromodomain testis associated JBrowse link 1 93,348,994 93,413,343 RGD:9068941
G CDK12 cyclin dependent kinase 12 JBrowse link 17 17,937,024 18,040,763 RGD:9068941
G CELF1 CUGBP Elav-like family member 1 JBrowse link 11 47,967,831 48,054,437 RGD:9068941
G CLK1 CDC like kinase 1 JBrowse link 2B 206,267,364 206,279,129 RGD:9068941
G CLK2 CDC like kinase 2 JBrowse link 1 134,213,237 134,223,842 RGD:9068941
G CLK3 CDC like kinase 3 JBrowse link 15 73,181,664 73,196,466 RGD:9068941
G CLK4 CDC like kinase 4 JBrowse link 5 181,017,365 181,041,632 RGD:9068941
G ESRP1 epithelial splicing regulatory protein 1 JBrowse link 8 93,202,915 93,532,172 RGD:9068941
G ESRP2 epithelial splicing regulatory protein 2 JBrowse link 16 67,995,763 68,005,823 RGD:9068941
G FASTK Fas activated serine/threonine kinase JBrowse link 7 154,816,011 154,820,266 RGD:9068941
G FUS FUS RNA binding protein JBrowse link 16 31,551,035 31,562,494 RGD:9068941
G HNRNPF heterogeneous nuclear ribonucleoprotein F JBrowse link 10 43,548,945 43,572,750 RGD:9068941
G HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 JBrowse link 5 182,044,229 182,053,647 RGD:9068941
G MBNL1 muscleblind like splicing regulator 1 JBrowse link 3 156,858,039 157,057,239 RGD:9068941
G MBNL2 muscleblind like splicing regulator 2 JBrowse link 13 97,538,615 97,711,843 RGD:9068941
G MBNL3 muscleblind like splicing regulator 3 JBrowse link X 131,808,495 131,879,019 RGD:9068941
G METTL4 methyltransferase like 4 JBrowse link 18 14,018,279 14,051,974 RGD:9068941
G MYOD1 myogenic differentiation 1 JBrowse link 11 17,456,124 17,458,690 RGD:9068941
G PQBP1 polyglutamine binding protein 1 JBrowse link X 49,046,351 49,058,587 RGD:9068941
G PRX periaxin JBrowse link 19 45,952,420 45,971,987 RGD:9068941
G RBM38 RNA binding motif protein 38 JBrowse link 20 55,010,623 55,027,746 RGD:9068941
G RRP1B ribosomal RNA processing 1B JBrowse link 21 43,217,516 43,251,192 RGD:9068941
G SNRNP70 small nuclear ribonucleoprotein U1 subunit 70 JBrowse link 19 55,021,402 55,044,351 RGD:9068941
G SON SON DNA and RNA binding protein JBrowse link 21 33,282,691 33,317,063 RGD:9068941
G SRRM4 serine/arginine repetitive matrix 4 JBrowse link 12 119,939,573 120,117,175 RGD:9068941
G TRA2B transformer 2 beta homolog JBrowse link 3 191,414,777 191,436,103 RGD:9068941
G ZNF326 zinc finger protein 326 JBrowse link 1 91,405,460 91,438,913 RGD:9068941
regulation of rRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NCL nucleolin JBrowse link 2B 237,490,378 237,500,193 RGD:9068941
G USP36 ubiquitin specific peptidase 36 JBrowse link 17 78,416,541 78,461,683 RGD:9068941
RNA 3' uridylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LIN28A lin-28 homolog A JBrowse link 1 26,739,267 26,758,028 RGD:9068941
G TENT4A terminal nucleotidyltransferase 4A JBrowse link 5 6,709,590 6,752,159 RGD:9068941
G TENT4B terminal nucleotidyltransferase 4B JBrowse link 16 49,299,504 49,376,175 RGD:9068941
G TUT4 terminal uridylyl transferase 4 JBrowse link 1 53,292,477 53,422,893 RGD:9068941
G TUT7 terminal uridylyl transferase 7 JBrowse link 9 85,489,974 85,554,745 RGD:9068941
RNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LIN28A lin-28 homolog A JBrowse link 1 26,739,267 26,758,028 RGD:9068941
G LIN28B lin-28 homolog B JBrowse link 6 106,646,991 106,772,374 RGD:9068941
G TUT4 terminal uridylyl transferase 4 JBrowse link 1 53,292,477 53,422,893 RGD:9068941
G TUT7 terminal uridylyl transferase 7 JBrowse link 9 85,489,974 85,554,745 RGD:9068941
RNA 5'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PIWIL2 piwi like RNA-mediated gene silencing 2 JBrowse link 8 18,459,052 18,546,688 RGD:9068941
RNA splicing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CCAR2 cell cycle and apoptosis regulator 2 JBrowse link 8 18,792,993 18,809,354 RGD:9068941
G CDK12 cyclin dependent kinase 12 JBrowse link 17 17,937,024 18,040,763 RGD:9068941
G CELF3 CUGBP Elav-like family member 3 JBrowse link 1 130,701,452 130,718,578 RGD:9068941
G DDX39B DExD-box helicase 39B JBrowse link 6 32,081,210 32,093,135 RGD:9068941
G DDX47 DEAD-box helicase 47 JBrowse link 12 13,216,152 13,232,852 RGD:9068941
G FUS FUS RNA binding protein JBrowse link 16 31,551,035 31,562,494 RGD:9068941
G HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 JBrowse link 12 35,182,164 35,188,651 RGD:9068941
G IVNS1ABP influenza virus NS1A binding protein JBrowse link 1 164,974,734 164,995,608 RGD:9068941
G LUC7L3 LUC7 like 3 pre-mRNA splicing factor JBrowse link 17 49,686,554 49,723,092 RGD:9068941
G MBNL1 muscleblind like splicing regulator 1 JBrowse link 3 156,858,039 157,057,239 RGD:9068941
G RSRC1 arginine and serine rich coiled-coil 1 JBrowse link 3 163,203,152 163,561,997 RGD:9068941
G SCAF11 SR-related CTD associated factor 11 JBrowse link 12 43,603,961 43,678,883 RGD:9068941
G SCNM1 sodium channel modifier 1 JBrowse link 1 130,163,855 130,166,728 RGD:9068941
G SNRPF small nuclear ribonucleoprotein polypeptide F JBrowse link 12 96,841,638 96,848,864 RGD:9068941
G SRPK2 SRSF protein kinase 2 JBrowse link 7 109,834,478 110,119,558 RGD:9068941
G SRSF1 serine and arginine rich splicing factor 1 JBrowse link 17 56,937,295 56,944,874 RGD:9068941
G SRSF7 serine and arginine rich splicing factor 7 JBrowse link 2A 39,536,722 39,545,562 RGD:9068941
G TAF15 TATA-box binding protein associated factor 15 JBrowse link 17 21,243,270 21,280,464 RGD:9068941
G TARDBP TAR DNA binding protein JBrowse link 1 10,996,006 11,008,732 RGD:9068941
G TCERG1 transcription elongation regulator 1 JBrowse link 5 147,908,980 147,972,277 RGD:9068941
G U2AF2 U2 small nuclear RNA auxiliary factor 2 JBrowse link 19 61,386,062 61,406,582 RGD:9068941
G UMOD uromodulin JBrowse link 16 20,429,822 20,449,266 RGD:9068941
G USB1 U6 snRNA biogenesis phosphodiesterase 1 JBrowse link 16 57,408,841 57,430,665 RGD:9068941
G WBP11 WW domain binding protein 11 JBrowse link 12 15,189,323 15,206,377 RGD:9068941
G WT1 WT1 transcription factor JBrowse link 11 32,238,720 32,282,879 RGD:9068941
RNA splicing, via transesterification reactions term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DBR1 debranching RNA lariats 1 JBrowse link 3 142,639,712 142,653,016 RGD:9068941
G SCAF11 SR-related CTD associated factor 11 JBrowse link 12 43,603,961 43,678,883 RGD:9068941
G SLU7 SLU7 homolog, splicing factor JBrowse link 5 162,486,743 162,504,316 RGD:9068941
G SRSF10 serine and arginine rich splicing factor 10 JBrowse link 1 24,149,423 24,165,057 RGD:9068941
G WDR83 WD repeat domain 83 JBrowse link 19 12,976,952 12,983,221 RGD:9068941
rRNA (guanine-N7)-methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BUD23 BUD23 rRNA methyltransferase and ribosome maturation factor JBrowse link 7 80,836,518 80,851,501 RGD:9068941
G TRMT112 tRNA methyltransferase subunit 11-2 JBrowse link 11 63,018,695 63,020,086 RGD:9068941
rRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ERI1 exoribonuclease 1 RGD:9068941
rRNA base methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NSUN5 NOP2/Sun RNA methyltransferase 5 JBrowse link 7 80,454,524 80,461,353 RGD:9068941
rRNA methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DIMT1 DIMT1 rRNA methyltransferase and ribosome maturation factor JBrowse link 5 53,234,921 53,250,082 RGD:9068941
G FBL fibrillarin JBrowse link 19 45,413,978 45,425,930 RGD:9068941
G METTL5 methyltransferase like 5 JBrowse link 2B 174,549,310 174,562,269 RGD:9068941
G NSUN4 NOP2/Sun RNA methyltransferase 4 JBrowse link 1 46,999,724 47,024,152 RGD:9068941
G TRMT112 tRNA methyltransferase subunit 11-2 JBrowse link 11 63,018,695 63,020,086 RGD:9068941
G ZCCHC4 zinc finger CCHC-type containing 4 JBrowse link 4 24,997,557 25,054,886 RGD:9068941
rRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BOP1 BOP1 ribosomal biogenesis factor JBrowse link 8 144,015,518 144,043,278 RGD:9068941
G DDX27 DEAD-box helicase 27 JBrowse link 20 46,626,761 46,647,238 RGD:9068941
G DDX47 DEAD-box helicase 47 JBrowse link 12 13,216,152 13,232,852 RGD:9068941
G EXOSC3 exosome component 3 JBrowse link 9 38,552,659 38,558,075 RGD:9068941
G IMP3 IMP U3 small nucleolar ribonucleoprotein 3 JBrowse link 15 74,140,632 74,141,810 RGD:9068941
G LYAR Ly1 antibody reactive JBrowse link 4 4,348,263 4,370,716 RGD:9068941
G MTREX Mtr4 exosome RNA helicase JBrowse link 5 60,227,431 60,345,303 RGD:9068941
G NOL8 nucleolar protein 8 JBrowse link 9 91,492,883 91,521,466 RGD:9068941
G NPM3 nucleophosmin/nucleoplasmin 3 JBrowse link 10 101,855,759 101,857,843 RGD:9068941
G NVL nuclear VCP like JBrowse link 1 204,704,095 204,807,027 RGD:9068941
G PES1 pescadillo ribosomal biogenesis factor 1 JBrowse link 22 29,405,669 29,420,974 RGD:9068941
G PIN4 peptidylprolyl cis/trans isomerase, NIMA-interacting 4 JBrowse link X 71,503,148 71,586,017 RGD:9068941
G RNASEL ribonuclease L JBrowse link 1 161,744,169 161,759,741 RGD:9068941
G RPL11 ribosomal protein L11 JBrowse link 1 23,868,700 23,873,313 RGD:9068941
G RPL14 ribosomal protein L14 JBrowse link 3 40,632,699 40,637,697 RGD:9068941
G RPL26 ribosomal protein L26 JBrowse link 17 48,008,951 48,015,977 RGD:9068941
G RPL27 ribosomal protein L27 JBrowse link 17 14,548,798 14,553,727 RGD:9068941
G RPL35A ribosomal protein L35a JBrowse link 3 205,258,700 205,264,485 RGD:9068941
G RPL5 ribosomal protein L5 JBrowse link 1 94,231,605 94,241,522 RGD:9068941
G RPL7 ribosomal protein L7 JBrowse link 8 71,476,492 71,480,285 RGD:9068941
G RPS15 ribosomal protein S15 RGD:9068941
G RPS16 ribosomal protein S16 JBrowse link 19 45,079,106 45,081,985 RGD:9068941
G RPS17 ribosomal protein S17 JBrowse link 15 80,436,657 80,440,462 RGD:9068941
G RPS19 ribosomal protein S19 JBrowse link 19 47,254,157 47,264,953 RGD:9068941
G RPS24 ribosomal protein S24 JBrowse link 10 77,217,260 77,224,186 RGD:9068941
G RPS27 ribosomal protein S27 JBrowse link 1 132,975,795 132,977,192 RGD:9068941
G RPS28 ribosomal protein S28 JBrowse link 19 8,458,321 8,459,250 RGD:9068941
G RPS6 ribosomal protein S6 JBrowse link 9 19,674,380 19,678,397 RGD:9068941
G RPS7 ribosomal protein S7 JBrowse link 2A 3,511,821 3,517,785 RGD:9068941
G RRP36 ribosomal RNA processing 36 JBrowse link 6 43,908,750 43,916,314 RGD:9068941
G RRP9 ribosomal RNA processing 9, U3 small nucleolar RNA binding protein JBrowse link 3 53,103,621 53,112,127 RGD:9068941
G SBDS SBDS ribosome maturation factor JBrowse link 7 74,022,350 74,030,407 RGD:9068941
G UTP20 UTP20 small subunit processome component JBrowse link 12 102,265,283 102,372,830 RGD:9068941
G WDR55 WD repeat domain 55 JBrowse link 5 142,145,749 142,152,992 RGD:9068941
G WDR74 WD repeat domain 74 JBrowse link 11 61,542,300 61,549,754 RGD:9068941
rRNA pseudouridine synthesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DKC1 dyskerin pseudouridine synthase 1 JBrowse link X 154,084,412 154,098,475 RGD:9068941
snoRNA guided rRNA pseudouridine synthesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DKC1 dyskerin pseudouridine synthase 1 JBrowse link X 154,084,412 154,098,475 RGD:9068941
G GAR1 GAR1 ribonucleoprotein JBrowse link 4 112,878,912 112,888,134 RGD:9068941
G NHP2 NHP2 ribonucleoprotein JBrowse link 5 180,566,008 180,570,502 RGD:9068941
G NOP10 NOP10 ribonucleoprotein JBrowse link 15 31,684,833 31,686,305 RGD:9068941
snoRNA polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TENT4B terminal nucleotidyltransferase 4B JBrowse link 16 49,299,504 49,376,175 RGD:9068941
snRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TOE1 target of EGR1, exonuclease JBrowse link 1 46,000,974 46,005,279 RGD:9068941
snRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G INTS1 integrator complex subunit 1 JBrowse link 7 1,838,001 1,871,974 RGD:9068941
G INTS10 integrator complex subunit 10 JBrowse link 8 15,991,599 16,026,516 RGD:9068941
G INTS11 integrator complex subunit 11 JBrowse link 1 1,266,581 1,281,430 RGD:9068941
G INTS12 integrator complex subunit 12 JBrowse link 4 108,760,946 108,786,766 RGD:9068941
G INTS2 integrator complex subunit 2 JBrowse link 17 61,086,226 61,142,870 RGD:9068941
G INTS3 integrator complex subunit 3 JBrowse link 1 132,714,200 132,759,842 RGD:9068941
G INTS4 integrator complex subunit 4 JBrowse link 11 76,582,411 76,622,849 RGD:9068941
G INTS5 integrator complex subunit 5 JBrowse link 11 61,358,029 61,364,549 RGD:9068941
G INTS6 integrator complex subunit 6 JBrowse link 13 51,233,645 51,328,618 RGD:9068941
G INTS7 integrator complex subunit 7 JBrowse link 1 192,372,012 192,466,510 RGD:9068941
G INTS8 integrator complex subunit 8 JBrowse link 8 93,645,053 93,702,373 RGD:9068941
G INTS9 integrator complex subunit 9 JBrowse link 8 25,247,565 25,369,907 RGD:9068941
G TUT1 terminal uridylyl transferase 1, U6 snRNA-specific JBrowse link 11 61,287,375 61,303,784 RGD:9068941
spliceosomal complex assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CRNKL1 crooked neck pre-mRNA splicing factor 1 JBrowse link 20 19,957,545 19,975,809 RGD:9068941
G DDX39B DExD-box helicase 39B JBrowse link 6 32,081,210 32,093,135 RGD:9068941
G GCFC2 GC-rich sequence DNA-binding factor 2 JBrowse link 2A 77,237,702 77,286,670 RGD:9068941
G NCBP1 nuclear cap binding protein subunit 1 JBrowse link 9 96,845,422 96,885,624 RGD:9068941
G PRPF19 pre-mRNA processing factor 19 JBrowse link 11 59,594,508 59,610,544 RGD:9068941
G RBM5 RNA binding motif protein 5 JBrowse link 3 51,251,889 51,282,338 RGD:9068941
G SCAF11 SR-related CTD associated factor 11 JBrowse link 12 43,603,961 43,678,883 RGD:9068941
G SRPK2 SRSF protein kinase 2 JBrowse link 7 109,834,478 110,119,558 RGD:9068941
G USP39 ubiquitin specific peptidase 39 JBrowse link 2A 87,219,121 87,251,931 RGD:9068941
G ZRSR2 zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2 JBrowse link X 15,771,738 15,804,931 RGD:9068941
spliceosomal complex disassembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TFIP11 tuftelin interacting protein 11 JBrowse link 22 25,276,657 25,296,310 RGD:9068941
spliceosomal snRNP assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CLNS1A chloride nucleotide-sensitive channel 1A JBrowse link 11 76,321,769 76,343,055 RGD:9068941
G DDX20 DEAD-box helicase 20 JBrowse link 1 125,918,392 125,929,961 RGD:9068941
G GEMIN2 gem nuclear organelle associated protein 2 JBrowse link 14 38,240,343 38,262,370 RGD:9068941
G GEMIN4 gem nuclear organelle associated protein 4 JBrowse link 17 637,677 644,438 RGD:9068941
G GEMIN5 gem nuclear organelle associated protein 5 JBrowse link 5 156,284,947 156,335,833 RGD:9068941
G GEMIN6 gem nuclear organelle associated protein 6 JBrowse link 2A 39,571,370 39,574,467 RGD:9068941
G GEMIN7 gem nuclear organelle associated protein 7 JBrowse link 19 50,627,968 50,642,832 RGD:9068941
G GEMIN8 gem nuclear organelle associated protein 8 JBrowse link X 13,901,769 13,923,039 RGD:9068941
G PRMT5 protein arginine methyltransferase 5 JBrowse link 14 21,836,984 21,846,018 RGD:9068941
G PRMT7 protein arginine methyltransferase 7 JBrowse link 16 68,081,700 68,131,907 RGD:9068941
G SART3 spliceosome associated factor 3, U4/U6 recycling protein JBrowse link 12 109,490,261 109,529,091 RGD:9068941
G SNRPB small nuclear ribonucleoprotein polypeptides B and B1 JBrowse link 20 2,335,499 2,344,763 RGD:9068941
G SNRPC small nuclear ribonucleoprotein polypeptide C JBrowse link 6 35,421,467 35,437,622 RGD:9068941
G SNRPD1 small nuclear ribonucleoprotein D1 polypeptide JBrowse link 18 18,488,929 18,506,284 RGD:9068941
G SNRPD2 small nuclear ribonucleoprotein D2 polypeptide JBrowse link 19 51,230,822 51,235,661 RGD:9068941
G SNRPD3 small nuclear ribonucleoprotein D3 polypeptide JBrowse link 22 22,227,328 22,255,511 RGD:9068941
G SNRPE small nuclear ribonucleoprotein polypeptide E JBrowse link 1 183,755,378 183,764,937 RGD:9068941
G SNRPF small nuclear ribonucleoprotein polypeptide F JBrowse link 12 96,841,638 96,848,864 RGD:9068941
G SNRPG small nuclear ribonucleoprotein polypeptide G JBrowse link 2A 71,451,219 71,463,884 RGD:9068941
G STRAP serine/threonine kinase receptor associated protein JBrowse link 12 16,279,134 16,302,212 RGD:9068941
G TDRD6 tudor domain containing 6 JBrowse link 6 47,542,367 47,556,964 RGD:9068941
spliceosomal tri-snRNP complex assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LOC100967331 ubiquitin carboxyl-terminal hydrolase 4 JBrowse link 3 50,279,642 50,343,901 RGD:9068941
G LSM2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 6 32,344,669 32,354,630 RGD:9068941
G PRPF19 pre-mRNA processing factor 19 JBrowse link 11 59,594,508 59,610,544 RGD:9068941
G PRPF3 pre-mRNA processing factor 3 JBrowse link 1 129,317,223 129,348,430 RGD:9068941
G PRPF31 pre-mRNA processing factor 31 JBrowse link 19 59,891,070 59,907,159 RGD:9068941
G PRPF6 pre-mRNA processing factor 6 JBrowse link 20 61,899,076 61,948,088 RGD:9068941
G PRPF8 pre-mRNA processing factor 8 JBrowse link 17 1,532,579 1,565,254 RGD:9068941
G SART3 spliceosome associated factor 3, U4/U6 recycling protein JBrowse link 12 109,490,261 109,529,091 RGD:9068941
tRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PTCD1 pentatricopeptide repeat domain 1 JBrowse link 7 104,894,369 104,913,860 RGD:9068941
G SSB small RNA binding exonuclease protection factor La JBrowse link 2B 174,536,382 174,549,609 RGD:9068941
tRNA 3'-terminal CCA addition term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TRNT1 tRNA nucleotidyl transferase 1 JBrowse link 3 3,173,889 3,198,042 RGD:9068941
tRNA 5'-leader removal term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G POP1 POP1 homolog, ribonuclease P/MRP subunit JBrowse link 8 96,938,574 96,980,896 RGD:9068941
G POP4 POP4 homolog, ribonuclease P/MRP subunit JBrowse link 19 35,296,084 35,307,008 RGD:9068941
G POP5 POP5 homolog, ribonuclease P/MRP subunit JBrowse link 12 121,535,005 121,537,350 RGD:9068941
G POP7 POP7 homolog, ribonuclease P/MRP subunit JBrowse link 7 106,124,018 106,135,430 RGD:9068941
G RPP14 ribonuclease P/MRP subunit p14 JBrowse link 3 59,653,220 59,666,531 RGD:9068941
G RPP21 ribonuclease P/MRP subunit p21 JBrowse link 6 30,994,039 30,995,764 RGD:9068941
G RPP25 ribonuclease P and MRP subunit p25 RGD:9068941
G RPP30 ribonuclease P/MRP subunit p30 JBrowse link 10 91,138,993 91,171,848 RGD:9068941
G RPP38 ribonuclease P/MRP subunit p38 JBrowse link 10 15,694,410 15,701,569 RGD:9068941
G RPP40 ribonuclease P/MRP subunit p40 JBrowse link 6 5,015,953 5,024,540 RGD:9068941
G SSB small RNA binding exonuclease protection factor La JBrowse link 2B 174,536,382 174,549,609 RGD:9068941
tRNA C5-cytosine methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NSUN6 NOP2/Sun RNA methyltransferase 6 JBrowse link 10 19,196,248 19,304,089 RGD:9068941
tRNA demethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ALKBH1 alkB homolog 1, histone H2A dioxygenase JBrowse link 14 77,428,033 77,462,905 RGD:9068941
tRNA dihydrouridine synthesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DUS2 dihydrouridine synthase 2 JBrowse link 16 67,787,953 67,845,287 RGD:9068941
tRNA methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ALKBH8 alkB homolog 8, tRNA methyltransferase JBrowse link 11 105,872,588 105,937,472 RGD:9068941
G BCDIN3D BCDIN3 domain containing RNA methyltransferase JBrowse link 12 39,802,601 39,807,948 RGD:9068941
G METTL2A methyltransferase like 2A JBrowse link 20 30,900,046 30,904,284 RGD:9068941
G METTL2B methyltransferase like 2B RGD:9068941
G METTL6 methyltransferase like 6 JBrowse link 3 15,643,545 15,690,253 RGD:9068941
G NSUN2 NOP2/Sun RNA methyltransferase 2 JBrowse link 5 6,596,414 6,629,121 RGD:9068941
G NSUN6 NOP2/Sun RNA methyltransferase 6 JBrowse link 10 19,196,248 19,304,089 RGD:9068941
G TRDMT1 tRNA aspartic acid methyltransferase 1 JBrowse link 10 17,726,701 17,791,345 RGD:9068941
G TRMO tRNA methyltransferase O JBrowse link 9 97,115,398 97,133,361 RGD:9068941
G TRMT10A tRNA methyltransferase 10A JBrowse link 4 102,631,501 102,648,770 RGD:9068941
tRNA methylthiolation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CDKAL1 CDK5 regulatory subunit associated protein 1 like 1 JBrowse link 6 20,705,442 21,406,933 RGD:9068941
tRNA modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AARS1 alanyl-tRNA synthetase 1 JBrowse link 16 70,086,735 70,121,902 RGD:9068941
G ANKRD16 ankyrin repeat domain 16 JBrowse link 10 5,887,294 5,915,357 RGD:9068941
G DTWD1 DTW domain containing 1 JBrowse link 15 46,902,304 46,926,401 RGD:9068941
G DTWD2 DTW domain containing 2 JBrowse link 5 119,989,422 120,146,114 RGD:9068941
G METTL1 methyltransferase like 1 JBrowse link 12 31,414,619 31,418,588 RGD:9068941
G WDR4 WD repeat domain 4 JBrowse link 21 42,471,576 42,502,418 RGD:9068941
tRNA N1-guanine methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TRMT10A tRNA methyltransferase 10A JBrowse link 4 102,631,501 102,648,770 RGD:9068941
tRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ADAT1 adenosine deaminase tRNA specific 1 JBrowse link 16 75,510,780 75,540,312 RGD:9068941
G FARS2 phenylalanyl-tRNA synthetase 2, mitochondrial JBrowse link 6 5,279,111 5,790,110 RGD:9068941
G POP5 POP5 homolog, ribonuclease P/MRP subunit JBrowse link 12 121,535,005 121,537,350 RGD:9068941
G SSB small RNA binding exonuclease protection factor La JBrowse link 2B 174,536,382 174,549,609 RGD:9068941
G THG1L tRNA-histidine guanylyltransferase 1 like JBrowse link 5 159,737,327 159,747,405 RGD:9068941
tRNA pseudouridine synthesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PUS1 pseudouridine synthase 1 JBrowse link 12 134,011,927 134,027,160 RGD:9068941
G PUS10 pseudouridine synthase 10 JBrowse link 2A 62,171,933 62,252,283 RGD:9068941
G PUS3 pseudouridine synthase 3 JBrowse link 11 124,622,279 124,631,736 RGD:9068941
G PUS7 pseudouridine synthase 7 JBrowse link 7 110,177,282 110,243,923 RGD:9068941
tRNA splicing, via endonucleolytic cleavage and ligation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CLP1 cleavage factor polyribonucleotide kinase subunit 1 JBrowse link 11 56,368,732 56,373,129 RGD:9068941
G DDX1 DEAD-box helicase 1 JBrowse link 2A 15,716,044 15,753,482 RGD:9068941
G RTCB RNA 2',3'-cyclic phosphate and 5'-OH ligase JBrowse link 22 31,248,280 31,273,030 RGD:9068941
G RTRAF RNA transcription, translation and transport factor JBrowse link 14 50,874,274 50,889,493 RGD:9068941
G TRPT1 tRNA phosphotransferase 1 JBrowse link 11 62,928,097 62,930,568 RGD:9068941
G TSEN2 tRNA splicing endonuclease subunit 2 JBrowse link 3 12,754,106 12,800,801 RGD:9068941
G TSEN54 tRNA splicing endonuclease subunit 54 JBrowse link 17 75,017,357 75,025,166 RGD:9068941
G ZBTB8OS zinc finger and BTB domain containing 8 opposite strand JBrowse link 1 33,081,560 33,111,089 RGD:9068941
tRNA thio-modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G MOCS3 molybdenum cofactor synthesis 3 JBrowse link 20 48,432,496 48,435,534 RGD:9068941
G URM1 ubiquitin related modifier 1 JBrowse link 9 128,160,921 128,181,976 RGD:9068941
tRNA threonylcarbamoyladenosine modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G OSGEP O-sialoglycoprotein endopeptidase JBrowse link 14 19,373,836 19,381,888 RGD:9068941
G TPRKB TP53RK binding protein JBrowse link 2A 75,326,512 75,334,293 RGD:9068941
tRNA wobble base cytosine methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NSUN3 NOP2/Sun RNA methyltransferase 3 JBrowse link 3 97,807,732 97,878,472 RGD:9068941
tRNA wobble cytosine modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ALKBH1 alkB homolog 1, histone H2A dioxygenase JBrowse link 14 77,428,033 77,462,905 RGD:9068941
tRNA wobble uridine modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ALKBH8 alkB homolog 8, tRNA methyltransferase JBrowse link 11 105,872,588 105,937,472 RGD:9068941
G ELP3 elongator acetyltransferase complex subunit 3 JBrowse link 8 24,570,410 24,669,941 RGD:9068941
G MOCS3 molybdenum cofactor synthesis 3 JBrowse link 20 48,432,496 48,435,534 RGD:9068941
G MTO1 mitochondrial tRNA translation optimization 1 JBrowse link 6 74,570,849 74,612,567 RGD:9068941
G URM1 ubiquitin related modifier 1 JBrowse link 9 128,160,921 128,181,976 RGD:9068941
tRNA-guanine transglycosylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G QTRT1 queuine tRNA-ribosyltransferase catalytic subunit 1 JBrowse link 19 10,916,336 10,928,899 RGD:9068941
G QTRT2 queuine tRNA-ribosyltransferase accessory subunit 2 JBrowse link 3 118,114,739 118,146,349 RGD:9068941
U2 snRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G INTS1 integrator complex subunit 1 JBrowse link 7 1,838,001 1,871,974 RGD:9068941
U2-type prespliceosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SF3A1 splicing factor 3a subunit 1 JBrowse link 22 29,171,654 29,194,882 RGD:9068941
G SF3A2 splicing factor 3a subunit 2 JBrowse link 19 2,219,326 2,231,343 RGD:9068941
G SF3A3 splicing factor 3a subunit 3 JBrowse link 1 38,578,225 38,612,009 RGD:9068941
U6 snRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TUT1 terminal uridylyl transferase 1, U6 snRNA-specific JBrowse link 11 61,287,375 61,303,784 RGD:9068941
G USB1 U6 snRNA biogenesis phosphodiesterase 1 JBrowse link 16 57,408,841 57,430,665 RGD:9068941
wybutosine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TYW5 tRNA-yW synthesizing protein 5 JBrowse link 2B 205,338,762 205,362,872 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12491
    metabolic process 7938
      organic substance metabolic process 7624
        macromolecule metabolic process 6594
          gene expression 4074
            RNA processing 518
              RNA 3'-end processing + 58
              RNA 5'-end processing + 16
              RNA capping + 7
              RNA splicing + 259
              chloroplast RNA processing + 0
              conversion of ds siRNA to ss siRNA + 1
              dsRNA processing + 49
              mRNA processing + 271
              mitochondrial RNA processing + 13
              ncRNA processing + 180
              tRNA-type intron splice site recognition and cleavage 0
Path 2
Term Annotations click to browse term
  biological_process 12491
    cellular process 11602
      cellular metabolic process 7296
        cellular nitrogen compound metabolic process 4199
          nucleobase-containing compound metabolic process 3681
            nucleic acid metabolic process 3379
              RNA metabolic process 3001
                RNA processing 518
                  RNA 3'-end processing + 58
                  RNA 5'-end processing + 16
                  RNA capping + 7
                  RNA splicing + 259
                  chloroplast RNA processing + 0
                  conversion of ds siRNA to ss siRNA + 1
                  dsRNA processing + 49
                  mRNA processing + 271
                  mitochondrial RNA processing + 13
                  ncRNA processing + 180
                  tRNA-type intron splice site recognition and cleavage 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.