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ONTOLOGY REPORT - ANNOTATIONS


Term:RNA processing
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Accession:GO:0006396 term browser browse the term
Definition:Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
Synonyms:alt_id: GO:0006394
 xref: Wikipedia:Post-transcriptional_modification


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RNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adarb1 adenosine deaminase RNA specific B1 JBrowse link NW_004955407 41,886,286 41,962,846 RGD:9068941
G Ddx54 DEAD-box helicase 54 JBrowse link NW_004955482 9,493,840 9,509,916 RGD:9068941
G Dicer1 dicer 1, ribonuclease III JBrowse link NW_004955438 17,374,899 17,431,599 RGD:9068941
G Elavl4 ELAV like RNA binding protein 4 JBrowse link NW_004955464 8,699,142 8,847,289 RGD:9068941
G Rngtt RNA guanylyltransferase and 5'-phosphatase JBrowse link NW_004955411 15,486,532 15,766,880 RGD:9068941
G Wdhd1 WD repeat and HMG-box DNA binding protein 1 JBrowse link NW_004955409 8,539,617 8,587,537 RGD:9068941
7-methylguanosine cap hypermethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tgs1 trimethylguanosine synthase 1 JBrowse link NW_004955454 14,896,085 14,937,678 RGD:9068941
7-methylguanosine mRNA capping term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cmtr1 cap methyltransferase 1 JBrowse link NW_004955437 5,721,420 5,766,316 RGD:9068941
G Cmtr2 cap methyltransferase 2 JBrowse link NW_004955484 3,999,655 4,006,632 RGD:9068941
G Ncbp1 nuclear cap binding protein subunit 1 JBrowse link NW_004955419 27,778,300 27,819,878 RGD:9068941
G Ramac RNA guanine-7 methyltransferase activating subunit JBrowse link NW_004955416 13,686,997 13,691,792 RGD:9068941
G Rngtt RNA guanylyltransferase and 5'-phosphatase JBrowse link NW_004955411 15,486,532 15,766,880 RGD:9068941
G Rnmt RNA guanine-7 methyltransferase JBrowse link NW_004955402 319,520 344,129 RGD:9068941
alternative mRNA splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdk13 cyclin dependent kinase 13 JBrowse link NW_004955460 3,590,854 3,701,148 RGD:9068941
G Celf4 CUGBP Elav-like family member 4 JBrowse link NW_004955402 23,607,160 23,898,495 RGD:9068941
G Ddx17 DEAD-box helicase 17 JBrowse link NW_004955413 24,646,317 24,664,614 RGD:9068941
G Ddx5 DEAD-box helicase 5 JBrowse link NW_004955478 7,367,049 7,375,043 RGD:9068941
G Dhx9 DExH-box helicase 9 JBrowse link NW_004955406 21,697,813 21,743,551 RGD:9068941
G Esrp1 epithelial splicing regulatory protein 1 JBrowse link NW_004955417 10,813,831 10,881,238 RGD:9068941
G Esrp2 epithelial splicing regulatory protein 2 JBrowse link NW_004955484 8,426,453 8,433,902 RGD:9068941
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 JBrowse link NW_004955458 1,530,163 1,536,874 RGD:9068941
G Hnrnpm heterogeneous nuclear ribonucleoprotein M JBrowse link NW_004955563 933,824 975,064 RGD:9068941
G Insr insulin receptor JBrowse link NW_004955563 1,867,400 2,011,845 RGD:9068941
G Kdm1a lysine demethylase 1A JBrowse link NW_004955452 3,044,042 3,104,650 RGD:9068941
G Mbnl1 muscleblind like splicing regulator 1 JBrowse link NW_004955448 3,864,862 4,065,122 RGD:9068941
G Pqbp1 polyglutamine binding protein 1 JBrowse link NW_004955543 430,324 434,205 RGD:9068941
G Rbm17 RNA binding motif protein 17 JBrowse link NW_004955421 22,732,757 22,745,926 RGD:9068941
G Rsrc1 arginine and serine rich coiled-coil 1 JBrowse link NW_004955448 8,947,553 9,249,465 RGD:9068941
G Scnm1 sodium channel modifier 1 JBrowse link NW_004955588 526,986 529,774 RGD:9068941
G Sfpq splicing factor proline and glutamine rich JBrowse link NW_004955452 13,267,968 13,283,823 RGD:9068941
G Sfswap splicing factor SWAP JBrowse link NW_004955482 808,684 871,377 RGD:9068941
G Slu7 SLU7 homolog, splicing factor JBrowse link NW_004955408 14,268,958 14,288,114 RGD:9068941
G Srsf1 serine and arginine rich splicing factor 1 JBrowse link NW_004955451 4,992,634 4,996,619 RGD:9068941
G Srsf6 serine and arginine rich splicing factor 6 JBrowse link NW_004955445 13,663,474 13,669,102 RGD:9068941
box C/D snoRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Larp7 La ribonucleoprotein 7, transcriptional regulator JBrowse link NW_004955457 14,178,674 14,200,164 RGD:9068941
box H/ACA snoRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Parn poly(A)-specific ribonuclease JBrowse link NW_004955442 4,255,726 4,421,083 RGD:9068941
cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bop1 BOP1 ribosomal biogenesis factor JBrowse link NW_004955454 2,882,694 2,907,177 RGD:9068941
G Npm1 nucleophosmin 1 JBrowse link NW_004955408 24,151,070 24,218,783 RGD:9068941
conversion of ds siRNA to ss siRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dicer1 dicer 1, ribonuclease III JBrowse link NW_004955438 17,374,899 17,431,599 RGD:9068941
conversion of ds siRNA to ss siRNA involved in RNA interference term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dicer1 dicer 1, ribonuclease III JBrowse link NW_004955438 17,374,899 17,431,599 RGD:9068941
endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fcf1 FCF1 rRNA-processing protein JBrowse link NW_004955523 801,117 818,521 RGD:9068941
G Rcl1 RNA terminal phosphate cyclase like 1 JBrowse link NW_004955434 9,073,643 9,137,387 RGD:9068941
G Utp23 UTP23 small subunit processome component JBrowse link NW_004955417 22,859,914 22,867,633 RGD:9068941
endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fcf1 FCF1 rRNA-processing protein JBrowse link NW_004955523 801,117 818,521 RGD:9068941
G Rcl1 RNA terminal phosphate cyclase like 1 JBrowse link NW_004955434 9,073,643 9,137,387 RGD:9068941
enzyme-directed rRNA pseudouridine synthesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dkc1 dyskerin pseudouridine synthase 1 JBrowse link NW_004955594 846,997 857,255 RGD:9068941
G Tsr3 TSR3 ribosome maturation factor JBrowse link NW_004955442 15,881,663 15,884,222 RGD:9068941
maturation of 5.8S rRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G C1d C1D nuclear receptor corepressor JBrowse link NW_004955424 16,787,094 16,801,600 RGD:9068941
G Exosc10 exosome component 10 JBrowse link NW_004955486 2,601,362 2,626,451 RGD:9068941
G Exosc4 exosome component 4 JBrowse link NW_004955454 2,732,308 2,734,398 RGD:9068941
G Mphosph6 M-phase phosphoprotein 6 JBrowse link NW_004955564 1,866,924 1,877,884 RGD:9068941
G Mtrex Mtr4 exosome RNA helicase JBrowse link NW_004955446 12,270,338 12,362,064 RGD:9068941
G Nol9 nucleolar protein 9 JBrowse link NW_004955486 6,066,093 6,079,756 RGD:9068941
G Prkdc protein kinase, DNA-activated, catalytic subunit JBrowse link NW_004955454 7,733,697 7,890,896 RGD:9068941
maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pes1 pescadillo ribosomal biogenesis factor 1 JBrowse link NW_004955455 4,794,189 4,808,235 RGD:9068941
G Wdr12 WD repeat domain 12 JBrowse link NW_004955457 11,947,816 11,970,066 RGD:9068941
maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bop1 BOP1 ribosomal biogenesis factor JBrowse link NW_004955454 2,882,694 2,907,177 RGD:9068941
G Gtpbp4 GTP binding protein 4 JBrowse link NW_004955492 5,594 33,558 RGD:9068941
G Pes1 pescadillo ribosomal biogenesis factor 1 JBrowse link NW_004955455 4,794,189 4,808,235 RGD:9068941
G Wdr12 WD repeat domain 12 JBrowse link NW_004955457 11,947,816 11,970,066 RGD:9068941
maturation of SSU-rRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nol11 nucleolar protein 11 JBrowse link NW_004955478 6,863,203 6,891,549 RGD:9068941
G Riok1 RIO kinase 1 JBrowse link NW_004955465 6,487,078 6,506,108 RGD:9068941
G Riok2 RIO kinase 2 JBrowse link NW_004955418 15,487,248 15,509,490 RGD:9068941
G Riok3 RIO kinase 3 JBrowse link NW_004955402 11,649,160 11,670,010 RGD:9068941
G Rps19 ribosomal protein S19 JBrowse link NW_004955555 969,345 976,122 RGD:9068941
G Utp4 UTP4 small subunit processome component JBrowse link NW_004955484 7,501,784 7,531,757 RGD:9068941
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bysl bystin like JBrowse link NW_004955437 8,257,081 8,266,627 RGD:9068941
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit JBrowse link NW_004955555 2,355,005 2,369,599 RGD:9068941
G Gtf2h5 general transcription factor IIH subunit 5 JBrowse link NW_004955439 4,226,530 4,234,390 RGD:9068941
G Rps19 ribosomal protein S19 JBrowse link NW_004955555 969,345 976,122 RGD:9068941
mitochondrial mRNA polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 JBrowse link NW_004955424 27,407,451 27,449,830 RGD:9068941
mitochondrial mRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tbrg4 transforming growth factor beta regulator 4 JBrowse link NW_004955456 7,197,690 7,207,102 RGD:9068941
mitochondrial RNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 JBrowse link NW_004955424 27,407,451 27,449,830 RGD:9068941
G Supv3l1 Suv3 like RNA helicase JBrowse link NW_004955437 21,880,778 21,905,540 RGD:9068941
mitochondrial RNA 5'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 JBrowse link NW_004955424 27,407,451 27,449,830 RGD:9068941
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit JBrowse link NW_004955427 3,133,225 3,137,070 RGD:9068941
mitochondrial RNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fastkd5 FAST kinase domains 5 JBrowse link NW_004955415 14,052,009 14,063,208 RGD:9068941
mitochondrial tRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hsd17b10 hydroxysteroid 17-beta dehydrogenase 10 JBrowse link NW_004955475 478,690 481,029 RGD:9068941
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit JBrowse link NW_004955427 3,133,225 3,137,070 RGD:9068941
G Trnt1 tRNA nucleotidyl transferase 1 JBrowse link NW_004955421 10,192,065 10,211,527 RGD:9068941
mitochondrial tRNA 3'-trailer cleavage, endonucleolytic term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Elac2 elaC ribonuclease Z 2 JBrowse link NW_004955467 4,406,947 4,428,769 RGD:9068941
mitochondrial tRNA 5'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hsd17b10 hydroxysteroid 17-beta dehydrogenase 10 JBrowse link NW_004955475 478,690 481,029 RGD:9068941
G Prorp protein only RNase P catalytic subunit JBrowse link NW_004955409 25,791,209 25,920,651 RGD:9068941
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit JBrowse link NW_004955427 3,133,225 3,137,070 RGD:9068941
mitochondrial tRNA methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hsd17b10 hydroxysteroid 17-beta dehydrogenase 10 JBrowse link NW_004955475 478,690 481,029 RGD:9068941
G Trmt5 tRNA methyltransferase 5 JBrowse link NW_004955466 8,679,795 8,690,203 RGD:9068941
G Trmt61b tRNA methyltransferase 61B JBrowse link NW_004955469 10,744,814 10,771,560 RGD:9068941
mitochondrial tRNA modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdk5rap1 CDK5 regulatory subunit associated protein 1 JBrowse link NW_004955422 27,878,048 27,907,157 RGD:9068941
mitochondrial tRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit JBrowse link NW_004955427 3,133,225 3,137,070 RGD:9068941
mitochondrial tRNA wobble uridine modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mto1 mitochondrial tRNA translation optimization 1 JBrowse link NW_004955493 8,636,093 8,655,090 RGD:9068941
mRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Zc3h3 zinc finger CCCH-type containing 3 JBrowse link NW_004955454 2,145,605 2,239,643 RGD:9068941
mRNA 3'-end processing by stem-loop binding and cleavage term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cpsf2 cleavage and polyadenylation specific factor 2 JBrowse link NW_004955438 14,449,320 14,483,003 RGD:9068941
G Cpsf3 cleavage and polyadenylation specific factor 3 JBrowse link NW_004955487 5,146,541 5,170,077 RGD:9068941
G Lsm11 LSM11, U7 small nuclear RNA associated JBrowse link NW_004955408 11,871,335 11,879,041 RGD:9068941
G Slbp stem-loop binding protein JBrowse link NW_004955514 954,489 968,670 RGD:9068941
G Znf473 zinc finger protein 473 JBrowse link NW_004955559 911,785 932,510 RGD:9068941
mRNA 3'-splice site recognition term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Slu7 SLU7 homolog, splicing factor JBrowse link NW_004955408 14,268,958 14,288,114 RGD:9068941
mRNA 5'-splice site recognition term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Psip1 PC4 and SFRS1 interacting protein 1 JBrowse link NW_004955434 18,312,646 18,357,753 RGD:9068941
G Sfswap splicing factor SWAP JBrowse link NW_004955482 808,684 871,377 RGD:9068941
G Srsf1 serine and arginine rich splicing factor 1 JBrowse link NW_004955451 4,992,634 4,996,619 RGD:9068941
G Srsf12 serine and arginine rich splicing factor 12 JBrowse link NW_004955411 15,851,482 15,918,864 RGD:9068941
mRNA alternative polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cpsf6 cleavage and polyadenylation specific factor 6 JBrowse link NW_004955458 15,684,040 15,708,011 RGD:9068941
G Cpsf7 cleavage and polyadenylation specific factor 7 JBrowse link NW_004955511 6,139,118 6,161,130 RGD:9068941
G Nudt21 nudix hydrolase 21 JBrowse link NW_004955433 14,220,356 14,234,423 RGD:9068941
G Virma vir like m6A methyltransferase associated JBrowse link NW_004955417 10,690,128 10,759,808 RGD:9068941
mRNA cis splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dcps decapping enzyme, scavenger JBrowse link NW_004955412 27,326,946 27,367,455 RGD:9068941
G Ncbp2 nuclear cap binding protein subunit 2 JBrowse link NW_004955420 12,979,368 12,992,500 RGD:9068941
G Rbm22 RNA binding motif protein 22 JBrowse link NW_004955415 3,895,272 3,905,801 RGD:9068941
G Wbp4 WW domain binding protein 4 JBrowse link NW_004955404 51,046,245 51,094,245 RGD:9068941
mRNA cleavage involved in mRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ern1 endoplasmic reticulum to nucleus signaling 1 JBrowse link NW_004955478 7,720,664 7,803,662 RGD:9068941
mRNA polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ahcyl1 adenosylhomocysteinase like 1 JBrowse link NW_004955435 13,487,441 13,525,924 RGD:9068941
G Aplp1 amyloid beta precursor like protein 1 JBrowse link NW_004955468 2,694,286 2,703,658 RGD:9068941
G App amyloid beta precursor protein JBrowse link NW_004955407 25,725,259 25,973,582 RGD:9068941
G Cdc73 cell division cycle 73 JBrowse link NW_004955406 30,533,919 30,665,812 RGD:9068941
G Cpsf1 cleavage and polyadenylation specific factor 1 JBrowse link NW_004955454 3,024,324 3,039,004 RGD:9068941
G Leo1 LEO1 homolog, Paf1/RNA polymerase II complex component JBrowse link NW_004955409 2,711,475 2,727,879 RGD:9068941
G Mtpap mitochondrial poly(A) polymerase JBrowse link NW_004955429 21,768,011 21,792,481 RGD:9068941
G Pabpc1l poly(A) binding protein cytoplasmic 1 like JBrowse link NW_004955445 12,425,738 12,450,830 RGD:9068941
G Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component JBrowse link NW_004955468 166,477 172,200 RGD:9068941
G Papola poly(A) polymerase alpha JBrowse link NW_004955438 18,267,515 18,334,379 RGD:9068941
G Ssu72 SSU72 homolog, RNA polymerase II CTD phosphatase JBrowse link NW_004955486 9,317,078 9,338,414 RGD:9068941
G Sympk symplekin JBrowse link NW_004955574 264,312 292,616 RGD:9068941
G Tent4b terminal nucleotidyltransferase 4B JBrowse link NW_004955433 8,288,432 8,347,347 RGD:9068941
G Tut1 terminal uridylyl transferase 1, U6 snRNA-specific JBrowse link NW_004955599 596,565 606,498 RGD:9068941
mRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Akap8l A-kinase anchoring protein 8 like JBrowse link NW_004955495 7,839,339 7,874,432 RGD:9068941
G Alkbh5 alkB homolog 5, RNA demethylase JBrowse link NW_004955478 11,104,445 11,128,980 RGD:9068941
G Cpsf6 cleavage and polyadenylation specific factor 6 JBrowse link NW_004955458 15,684,040 15,708,011 RGD:9068941
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 JBrowse link NW_004955410 28,032,193 28,042,459 RGD:9068941
G Khdrbs3 KH RNA binding domain containing, signal transduction associated 3 JBrowse link NW_004955461 9,751,057 9,926,211 RGD:9068941
G LOC102021406 histone H2A JBrowse link NW_004955593 911,641 911,919 RGD:9068941
G Mettl3 methyltransferase like 3 JBrowse link NW_004955550 2,211,270 2,227,715 RGD:9068941
G Nudt21 nudix hydrolase 21 JBrowse link NW_004955433 14,220,356 14,234,423 RGD:9068941
G Phrf1 PHD and ring finger domains 1 JBrowse link NW_004955476 11,446,194 11,476,892 RGD:9068941
G Prkaca protein kinase cAMP-activated catalytic subunit alpha JBrowse link NW_004955415 32,794,172 32,807,944 RGD:9068941
G Prmt9 protein arginine methyltransferase 9 JBrowse link NW_004955428 3,215,335 3,243,569 RGD:9068941
G Ptbp1 polypyrimidine tract binding protein 1 JBrowse link NW_004955495 6,990,565 7,002,492 RGD:9068941
G Qki QKI, KH domain containing RNA binding JBrowse link NW_004955439 17,925,205 18,079,727 RGD:9068941
G Scaf1 SR-related CTD associated factor 1 JBrowse link NW_004955559 1,229,479 1,234,563 RGD:9068941
G Scaf4 SR-related CTD associated factor 4 JBrowse link NW_004955407 31,269,673 31,303,823 RGD:9068941
G Scaf8 SR-related CTD associated factor 8 JBrowse link NW_004955439 7,282,264 7,361,855 RGD:9068941
G Sf3a1 splicing factor 3a subunit 1 JBrowse link NW_004955455 4,579,153 4,601,942 RGD:9068941
G Sf3a2 splicing factor 3a subunit 2 JBrowse link NW_004955495 5,896,648 5,904,287 RGD:9068941
G Sf3a3 splicing factor 3a subunit 3 JBrowse link NW_004955452 15,691,729 15,715,782 RGD:9068941
G Son SON DNA and RNA binding protein JBrowse link NW_004955407 32,974,656 33,007,073 RGD:9068941
G Srrm4 serine/arginine repetitive matrix 4 JBrowse link NW_004955455 12,318,529 12,473,420 RGD:9068941
G Tcerg1 transcription elongation regulator 1 JBrowse link NW_004955415 7,597,557 7,665,215 RGD:9068941
mRNA splice site selection term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Celf1 CUGBP Elav-like family member 1 JBrowse link NW_004955422 742,017 817,649 RGD:9068941
G Celf2 CUGBP Elav-like family member 2 JBrowse link NW_004955421 27,064,497 27,374,850 RGD:9068941
G Celf4 CUGBP Elav-like family member 4 JBrowse link NW_004955402 23,607,160 23,898,495 RGD:9068941
G Khdc4 KH domain containing 4, pre-mRNA splicing factor JBrowse link NW_004955545 2,100,440 2,120,412 RGD:9068941
G Mbnl1 muscleblind like splicing regulator 1 JBrowse link NW_004955448 3,864,862 4,065,122 RGD:9068941
G Nol3 nucleolar protein 3 JBrowse link NW_004955484 9,443,090 9,447,142 RGD:9068941
G Ptbp2 polypyrimidine tract binding protein 2 JBrowse link NW_004955435 1,703,588 1,773,016 RGD:9068941
G Rbmx RNA binding motif protein X-linked JBrowse link NW_004955489 8,280,842 8,286,252 RGD:9068941
G Setx senataxin JBrowse link NW_004955513 1,718,432 1,776,133 RGD:9068941
G Srsf10 serine and arginine rich splicing factor 10 JBrowse link NW_004955452 3,831,545 3,846,292 RGD:9068941
G Srsf6 serine and arginine rich splicing factor 6 JBrowse link NW_004955445 13,663,474 13,669,102 RGD:9068941
G Ythdc1 YTH domain containing 1 JBrowse link NW_004955447 4,474,920 4,505,359 RGD:9068941
mRNA splicing, via endonucleolytic cleavage and ligation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ern1 endoplasmic reticulum to nucleus signaling 1 JBrowse link NW_004955478 7,720,664 7,803,662 RGD:9068941
mRNA splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aqr aquarius intron-binding spliceosomal factor JBrowse link NW_004955416 2,214,990 2,304,924 RGD:9068941
G Bcas2 BCAS2 pre-mRNA processing factor JBrowse link NW_004955435 17,830,532 17,857,360 RGD:9068941
G Bud13 BUD13 homolog JBrowse link NW_004955412 18,095,069 18,113,386 RGD:9068941
G Bud31 BUD31 homolog JBrowse link NW_004955460 15,083,472 15,092,217 RGD:9068941
G Casc3 CASC3 exon junction complex subunit JBrowse link NW_004955451 14,784,915 14,804,191 RGD:9068941
G Cdc40 cell division cycle 40 JBrowse link NW_004955411 34,966,797 35,007,577 RGD:9068941
G Cdc5l cell division cycle 5 like JBrowse link NW_004955437 9,990,613 10,032,034 RGD:9068941
G Crnkl1 crooked neck pre-mRNA splicing factor 1 JBrowse link NW_004955415 28,158,351 28,171,335 RGD:9068941
G Cwc15 CWC15 spliceosome associated protein homolog JBrowse link NW_004955605 32,721 42,981 RGD:9068941
G Cwc22 CWC22 spliceosome associated protein homolog JBrowse link NW_004955403 17,070,588 17,125,918 RGD:9068941
G Cwc25 CWC25 spliceosome associated protein homolog JBrowse link NW_004955451 13,867,570 13,884,433 RGD:9068941
G Ddx39a DExD-box helicase 39A JBrowse link NW_004955415 33,021,976 33,030,479 RGD:9068941
G Ddx39b DExD-box helicase 39B JBrowse link NW_004955437 72,835 84,045 RGD:9068941
G Ddx41 DEAD-box helicase 41 JBrowse link NW_004955408 29,748,091 29,753,610 RGD:9068941
G Dhx16 DEAH-box helicase 16 JBrowse link NW_004955583 657,425 668,390 RGD:9068941
G Dhx38 DEAH-box helicase 38 JBrowse link NW_004955484 4,752,834 4,770,843 RGD:9068941
G Dhx8 DEAH-box helicase 8 JBrowse link NW_004955451 16,941,422 16,963,690 RGD:9068941
G Eftud2 elongation factor Tu GTP binding domain containing 2 JBrowse link NW_004955451 17,655,659 17,690,117 RGD:9068941
G Eif4a3 eukaryotic translation initiation factor 4A3 JBrowse link NW_004955506 2,749,534 2,760,873 RGD:9068941
G Gpkow G-patch domain and KOW motifs JBrowse link NW_004955543 625,247 633,065 RGD:9068941
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 JBrowse link NW_004955410 28,032,193 28,042,459 RGD:9068941
G Hnrnpc heterogeneous nuclear ribonucleoprotein C JBrowse link NW_004955550 1,949,975 2,002,297 RGD:9068941
G Ik IK cytokine JBrowse link NW_004955418 39,695 52,862 RGD:9068941
G Isy1 ISY1 splicing factor homolog JBrowse link NW_004955429 13,513,191 13,527,516 RGD:9068941
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link NW_004955437 321,367 325,556 RGD:9068941
G Lsm3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link NW_004955429 16,968,490 16,977,517 RGD:9068941
G Lsm4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link NW_004955524 3,157,607 3,165,196 RGD:9068941
G Lsm5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link NW_004955617 42,829 47,999 RGD:9068941
G Lsm6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link NW_004955428 1,931,684 1,944,445 RGD:9068941
G Lsm7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link NW_004955495 5,829,976 5,836,785 RGD:9068941
G Lsm8 LSM8 homolog, U6 small nuclear RNA associated JBrowse link NW_004955432 23,818,036 23,823,550 RGD:9068941
G Magohb mago homolog B, exon junction complex subunit JBrowse link NW_004955413 7,195,078 7,201,659 RGD:9068941
G Mettl14 methyltransferase like 14 JBrowse link NW_004955428 21,475,981 21,507,730 RGD:9068941
G Mettl3 methyltransferase like 3 JBrowse link NW_004955550 2,211,270 2,227,715 RGD:9068941
G Mfap1 microfibril associated protein 1 JBrowse link NW_004955416 10,263,729 10,273,403 RGD:9068941
G Nova1 NOVA alternative splicing regulator 1 JBrowse link NW_004955409 33,681,947 33,820,356 RGD:9068941
G Phf5a PHD finger protein 5A JBrowse link NW_004955413 27,018,730 27,026,937 RGD:9068941
G Plrg1 pleiotropic regulator 1 JBrowse link NW_004955471 8,764,465 8,777,396 RGD:9068941
G Ppie peptidylprolyl isomerase E JBrowse link NW_004955452 17,242,255 17,256,776 RGD:9068941
G Ppil1 peptidylprolyl isomerase like 1 JBrowse link NW_004955437 6,131,013 6,143,474 RGD:9068941
G Prpf19 pre-mRNA processing factor 19 JBrowse link NW_004955511 5,546,212 5,552,368 RGD:9068941
G Prpf3 pre-mRNA processing factor 3 JBrowse link NW_004955413 429,259 455,449 RGD:9068941
G Prpf31 pre-mRNA processing factor 31 JBrowse link NW_004955604 125,489 136,209 RGD:9068941
G Prpf38a pre-mRNA processing factor 38A JBrowse link NW_004955464 6,742,200 6,761,059 RGD:9068941
G Prpf4 pre-mRNA processing factor 4 JBrowse link NW_004955419 14,190,146 14,206,086 RGD:9068941
G Prpf8 pre-mRNA processing factor 8 JBrowse link NW_004955481 1,499,634 1,530,670 RGD:9068941
G Rbm8a RNA binding motif protein 8A JBrowse link NW_004955568 164,050 166,162 RGD:9068941
G Rbmx2 RNA binding motif protein X-linked 2 JBrowse link NW_004955473 4,654,257 4,664,419 RGD:9068941
G Rnf113a ring finger protein 113A JBrowse link NW_004955534 154,242 155,474 RGD:9068941
G Rsrc1 arginine and serine rich coiled-coil 1 JBrowse link NW_004955448 8,947,553 9,249,465 RGD:9068941
G Sart1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP JBrowse link NW_004955422 19,360,641 19,370,623 RGD:9068941
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein JBrowse link NW_004955455 9,802,260 9,833,326 RGD:9068941
G Sf3a1 splicing factor 3a subunit 1 JBrowse link NW_004955455 4,579,153 4,601,942 RGD:9068941
G Sf3a2 splicing factor 3a subunit 2 JBrowse link NW_004955495 5,896,648 5,904,287 RGD:9068941
G Sf3a3 splicing factor 3a subunit 3 JBrowse link NW_004955452 15,691,729 15,715,782 RGD:9068941
G Sf3b1 splicing factor 3b subunit 1 JBrowse link NW_004955403 3,134,960 3,163,395 RGD:9068941
G Sf3b2 splicing factor 3b subunit 2 JBrowse link NW_004955422 19,242,041 19,266,479 RGD:9068941
G Sf3b3 splicing factor 3b subunit 3 JBrowse link NW_004955484 3,307,794 3,357,600 RGD:9068941
G Sf3b4 splicing factor 3b subunit 4 JBrowse link NW_004955413 826,190 830,502 RGD:9068941
G Sf3b5 splicing factor 3b subunit 5 JBrowse link NW_004955436 16,380,412 16,381,373 RGD:9068941
G Sf3b6 splicing factor 3b subunit 6 JBrowse link NW_004955469 6,275,894 6,286,908 RGD:9068941
G Smu1 SMU1 DNA replication regulator and spliceosomal factor JBrowse link NW_004955472 2,570,248 2,600,551 RGD:9068941
G Snip1 Smad nuclear interacting protein 1 JBrowse link NW_004955452 15,352,080 15,365,545 RGD:9068941
G Snrnp200 small nuclear ribonucleoprotein U5 subunit 200 JBrowse link NW_004955470 3,828,943 3,856,059 RGD:9068941
G Snrnp70 small nuclear ribonucleoprotein U1 subunit 70 JBrowse link NW_004955559 1,618,246 1,634,144 RGD:9068941
G Snrpa1 small nuclear ribonucleoprotein polypeptide A' JBrowse link NW_004955416 28,166,885 28,178,404 RGD:9068941
G Snrpb small nuclear ribonucleoprotein polypeptides B and B1 JBrowse link NW_004955415 13,522,638 13,530,725 RGD:9068941
G Snrpb2 small nuclear ribonucleoprotein polypeptide B2 JBrowse link NW_004955415 25,880,013 25,889,295 RGD:9068941
G Snrpc small nuclear ribonucleoprotein polypeptide C JBrowse link NW_004955437 2,770,251 2,830,871 RGD:9068941
G Snrpd1 small nuclear ribonucleoprotein D1 polypeptide JBrowse link NW_004955402 10,283,970 10,294,869 RGD:9068941
G Snrpd2 small nuclear ribonucleoprotein D2 polypeptide JBrowse link NW_004955574 157,769 164,947 RGD:9068941
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide JBrowse link NW_004955455 8,021,946 8,045,325 RGD:9068941
G Snrpe small nuclear ribonucleoprotein polypeptide E JBrowse link NW_004955406 39,725,841 39,732,527 RGD:9068941
G Snrpf small nuclear ribonucleoprotein polypeptide F JBrowse link NW_004955405 32,236,876 32,242,716 RGD:9068941
G Snrpg small nuclear ribonucleoprotein polypeptide G JBrowse link NW_004955424 14,844,318 14,851,720 RGD:9068941
G Snu13 small nuclear ribonucleoprotein 13 JBrowse link NW_004955413 27,160,985 27,172,648 RGD:9068941
G Snw1 SNW domain containing 1 JBrowse link NW_004955438 1,561,562 1,601,492 RGD:9068941
G Srrm2 serine/arginine repetitive matrix 2 JBrowse link NW_004955442 14,478,350 14,498,152 RGD:9068941
G Srsf10 serine and arginine rich splicing factor 10 JBrowse link NW_004955452 3,831,545 3,846,292 RGD:9068941
G Syf2 SYF2 pre-mRNA splicing factor JBrowse link NW_004955452 4,850,049 4,856,647 RGD:9068941
G Tra2a transformer 2 alpha homolog JBrowse link NW_004955410 25,759,649 25,784,128 RGD:9068941
G Tra2b transformer 2 beta homolog JBrowse link NW_004955420 21,707,618 21,728,186 RGD:9068941
G Txnl4a thioredoxin like 4A JBrowse link NW_004955402 63,153,274 63,166,208 RGD:9068941
G U2af2 U2 small nuclear RNA auxiliary factor 2 JBrowse link NW_004955567 683,472 699,105 RGD:9068941
G Usp39 ubiquitin specific peptidase 39 JBrowse link NW_004955424 1,867,910 1,893,338 RGD:9068941
G Usp49 ubiquitin specific peptidase 49 JBrowse link NW_004955437 8,187,118 8,237,910 RGD:9068941
G Wbp4 WW domain binding protein 4 JBrowse link NW_004955404 51,046,245 51,094,245 RGD:9068941
G Wdr83 WD repeat domain 83 JBrowse link NW_004955415 31,774,017 31,778,737 RGD:9068941
G Xab2 XPA binding protein 2 JBrowse link NW_004955563 1,630,403 1,638,333 RGD:9068941
G Ythdc1 YTH domain containing 1 JBrowse link NW_004955447 4,474,920 4,505,359 RGD:9068941
G Zmat2 zinc finger matrin-type 2 JBrowse link NW_004955418 4,335 10,844 RGD:9068941
G Zrsr2 zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2 JBrowse link NW_004955519 2,377,955 2,402,446 RGD:9068941
ncRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Zcchc8 zinc finger CCHC-type containing 8 JBrowse link NW_004955482 6,163,990 6,184,967 RGD:9068941
negative regulation of mRNA polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ccnt1 cyclin T1 JBrowse link NW_004955500 7,580,625 7,606,913 RGD:9068941
G Cdk9 cyclin dependent kinase 9 JBrowse link NW_004955419 874,959 883,160 RGD:9068941
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component JBrowse link NW_004955414 26,347,508 26,373,726 RGD:9068941
G Nelfe negative elongation factor complex member E JBrowse link NW_004955437 467,018 473,084 RGD:9068941
G Rnf20 ring finger protein 20 JBrowse link NW_004955419 24,273,714 24,299,454 RGD:9068941
G Rnf40 ring finger protein 40 JBrowse link NW_004955493 7,627,189 7,640,711 RGD:9068941
G Supt5h SPT5 homolog, DSIF elongation factor subunit JBrowse link NW_004955468 95,997 123,005 RGD:9068941
negative regulation of mRNA splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acin1 apoptotic chromatin condensation inducer 1 JBrowse link NW_004955409 37,206,675 37,246,851 RGD:9068941
G C1qbp complement C1q binding protein JBrowse link NW_004955467 10,788,142 10,792,272 RGD:9068941
G Celf4 CUGBP Elav-like family member 4 JBrowse link NW_004955402 23,607,160 23,898,495 RGD:9068941
G Dyrk1a dual specificity tyrosine phosphorylation regulated kinase 1A JBrowse link NW_004955407 36,456,628 36,588,940 RGD:9068941
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 JBrowse link NW_004955410 28,032,193 28,042,459 RGD:9068941
G Hnrnpk heterogeneous nuclear ribonucleoprotein K JBrowse link NW_004955432 3,246,090 3,257,774 RGD:9068941
G Hnrnpl heterogeneous nuclear ribonucleoprotein L JBrowse link NW_004955468 668,177 683,540 RGD:9068941
G Npm1 nucleophosmin 1 JBrowse link NW_004955408 24,151,070 24,218,783 RGD:9068941
G Pcbp4 poly(rC) binding protein 4 JBrowse link NW_004955532 3,604,720 3,615,112 RGD:9068941
G Ptbp1 polypyrimidine tract binding protein 1 JBrowse link NW_004955495 6,990,565 7,002,492 RGD:9068941
G Ptbp3 polypyrimidine tract binding protein 3 JBrowse link NW_004955419 15,002,780 15,101,588 RGD:9068941
G Rbm10 RNA binding motif protein 10 JBrowse link NW_004955516 904,852 934,313 RGD:9068941
G Rbm42 RNA binding motif protein 42 JBrowse link NW_004955468 4,844,780 4,854,261 RGD:9068941
G Rnps1 RNA binding protein with serine rich domain 1 JBrowse link NW_004955442 14,995,404 15,009,358 RGD:9068941
G Sap18 Sin3A associated protein 18 JBrowse link NW_004955497 1,862,026 1,869,974 RGD:9068941
G Sfswap splicing factor SWAP JBrowse link NW_004955482 808,684 871,377 RGD:9068941
G Srsf10 serine and arginine rich splicing factor 10 JBrowse link NW_004955452 3,831,545 3,846,292 RGD:9068941
G Srsf4 serine and arginine rich splicing factor 4 JBrowse link NW_004955452 8,143,850 8,174,830 RGD:9068941
G Srsf6 serine and arginine rich splicing factor 6 JBrowse link NW_004955445 13,663,474 13,669,102 RGD:9068941
G Srsf7 serine and arginine rich splicing factor 7 JBrowse link NW_004955441 6,416,709 6,423,185 RGD:9068941
G Srsf9 serine and arginine rich splicing factor 9 JBrowse link NW_004955455 11,175,760 11,183,597 RGD:9068941
G Tra2b transformer 2 beta homolog JBrowse link NW_004955420 21,707,618 21,728,186 RGD:9068941
G U2af2 U2 small nuclear RNA auxiliary factor 2 JBrowse link NW_004955567 683,472 699,105 RGD:9068941
negative regulation of pre-miRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bcdin3d BCDIN3 domain containing RNA methyltransferase JBrowse link NW_004955547 427,127 432,482 RGD:9068941
G Lin28b lin-28 homolog B JBrowse link NW_004955411 30,381,208 30,499,678 RGD:9068941
negative regulation of primary miRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Il6 interleukin 6 JBrowse link NW_004955410 25,079,835 25,084,390 RGD:9068941
G Lin28b lin-28 homolog B JBrowse link NW_004955411 30,381,208 30,499,678 RGD:9068941
G Mecp2 methyl-CpG binding protein 2 JBrowse link NW_004955580 674,014 737,586 RGD:9068941
G Stat3 signal transducer and activator of transcription 3 JBrowse link NW_004955451 16,320,326 16,348,505 RGD:9068941
negative regulation of production of miRNAs involved in gene silencing by miRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Esr1 estrogen receptor 1 JBrowse link NW_004955439 9,588,631 9,953,606 RGD:9068941
G Ncor1 nuclear receptor corepressor 1 JBrowse link NW_004955467 1,408,292 1,568,539 RGD:9068941
G Ncor2 nuclear receptor corepressor 2 JBrowse link NW_004955482 4,927,482 5,031,848 RGD:9068941
G Ppp3ca protein phosphatase 3 catalytic subunit alpha JBrowse link NW_004955496 6,934,542 7,059,745 RGD:9068941
G Tgfb1 transforming growth factor beta 1 JBrowse link NW_004955555 274,405 288,441 RGD:9068941
G Tnf tumor necrosis factor JBrowse link NW_004955437 117,267 119,899 RGD:9068941
G Tp53 tumor protein p53 JBrowse link NW_004955467 9,241,391 9,256,716 RGD:9068941
G Zc3h10 zinc finger CCCH-type containing 10 JBrowse link NW_004955458 3,720,451 3,725,196 RGD:9068941
G Zc3h12a zinc finger CCCH-type containing 12A JBrowse link NW_004955452 15,306,398 15,314,959 RGD:9068941
G Zmpste24 zinc metallopeptidase STE24 JBrowse link NW_004955537 82,724 134,609 RGD:9068941
negative regulation of production of siRNA involved in RNA interference term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tert telomerase reverse transcriptase JBrowse link NW_004955504 649,248 669,796 RGD:9068941
negative regulation of RNA splicing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Akt2 AKT serine/threonine kinase 2 JBrowse link NW_004955578 950,258 1,004,438 RGD:9068941
G Ptbp1 polypyrimidine tract binding protein 1 JBrowse link NW_004955495 6,990,565 7,002,492 RGD:9068941
G Ptbp2 polypyrimidine tract binding protein 2 JBrowse link NW_004955435 1,703,588 1,773,016 RGD:9068941
G Ptbp3 polypyrimidine tract binding protein 3 JBrowse link NW_004955419 15,002,780 15,101,588 RGD:9068941
G Rps13 ribosomal protein S13 JBrowse link NW_004955414 31,887,626 31,890,439 RGD:9068941
G Rps26 ribosomal protein S26 JBrowse link NW_004955458 3,632,675 3,634,565 RGD:9068941
G Tmbim6 transmembrane BAX inhibitor motif containing 6 JBrowse link NW_004955547 335,344 358,503 RGD:9068941
negative regulation of rRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Kat2b lysine acetyltransferase 2B JBrowse link NW_004955430 12,109,493 12,196,102 RGD:9068941
G Shq1 SHQ1, H/ACA ribonucleoprotein assembly factor JBrowse link NW_004955421 15,358,387 15,455,534 RGD:9068941
polyadenylation-dependent snoRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Parn poly(A)-specific ribonuclease JBrowse link NW_004955442 4,255,726 4,421,083 RGD:9068941
positive regulation of mRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ccnb1 cyclin B1 JBrowse link NW_004955446 140,661 149,500 RGD:9068941
G Cdc73 cell division cycle 73 JBrowse link NW_004955406 30,533,919 30,665,812 RGD:9068941
G Dhx36 DEAH-box helicase 36 JBrowse link NW_004955448 5,634,072 5,676,272 RGD:9068941
G Leo1 LEO1 homolog, Paf1/RNA polymerase II complex component JBrowse link NW_004955409 2,711,475 2,727,879 RGD:9068941
G Ncbp1 nuclear cap binding protein subunit 1 JBrowse link NW_004955419 27,778,300 27,819,878 RGD:9068941
G Ncbp2 nuclear cap binding protein subunit 2 JBrowse link NW_004955420 12,979,368 12,992,500 RGD:9068941
G Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component JBrowse link NW_004955468 166,477 172,200 RGD:9068941
positive regulation of mRNA polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cpeb1 cytoplasmic polyadenylation element binding protein 1 JBrowse link NW_004955416 13,963,300 14,038,691 RGD:9068941
G Cpeb3 cytoplasmic polyadenylation element binding protein 3 JBrowse link NW_004955425 1,032,446 1,224,300 RGD:9068941
G Hsf1 heat shock transcription factor 1 JBrowse link NW_004955454 2,907,265 2,932,352 RGD:9068941
G Nudt21 nudix hydrolase 21 JBrowse link NW_004955433 14,220,356 14,234,423 RGD:9068941
positive regulation of mRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adarb1 adenosine deaminase RNA specific B1 JBrowse link NW_004955407 41,886,286 41,962,846 RGD:9068941
positive regulation of mRNA splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Celf3 CUGBP Elav-like family member 3 JBrowse link NW_004955589 700,965 715,684 RGD:9068941
G Celf4 CUGBP Elav-like family member 4 JBrowse link NW_004955402 23,607,160 23,898,495 RGD:9068941
G Dazap1 DAZ associated protein 1 JBrowse link NW_004955495 6,499,553 6,516,227 RGD:9068941
G Eif4a3 eukaryotic translation initiation factor 4A3 JBrowse link NW_004955506 2,749,534 2,760,873 RGD:9068941
G Hmx2 H6 family homeobox 2 JBrowse link NW_004955477 1,294,479 1,302,433 RGD:9068941
G Hspa8 heat shock protein family A (Hsp70) member 8 JBrowse link NW_004955412 23,863,513 23,867,984 RGD:9068941
G Lmntd2 lamin tail domain containing 2 JBrowse link NW_004955476 11,487,918 11,493,281 RGD:9068941
G Ncbp1 nuclear cap binding protein subunit 1 JBrowse link NW_004955419 27,778,300 27,819,878 RGD:9068941
G Nup98 nucleoporin 98 and 96 precursor JBrowse link NW_004955414 19,499,577 19,607,075 RGD:9068941
G Obi1 ORC ubiquitin ligase 1 JBrowse link NW_004955404 28,759,640 28,803,257 RGD:9068941
G Prdx6 peroxiredoxin 6 JBrowse link NW_004955406 13,717,267 13,728,216 RGD:9068941
G Prpf19 pre-mRNA processing factor 19 JBrowse link NW_004955511 5,546,212 5,552,368 RGD:9068941
G Sf3b4 splicing factor 3b subunit 4 JBrowse link NW_004955413 826,190 830,502 RGD:9068941
G Slc39a5 solute carrier family 39 member 5 JBrowse link NW_004955458 3,843,492 3,849,794 RGD:9068941
G Snrnp70 small nuclear ribonucleoprotein U1 subunit 70 JBrowse link NW_004955559 1,618,246 1,634,144 RGD:9068941
G Snw1 SNW domain containing 1 JBrowse link NW_004955438 1,561,562 1,601,492 RGD:9068941
G Thrap3 thyroid hormone receptor associated protein 3 JBrowse link NW_004955452 14,233,155 14,282,521 RGD:9068941
G Tra2a transformer 2 alpha homolog JBrowse link NW_004955410 25,759,649 25,784,128 RGD:9068941
G Tra2b transformer 2 beta homolog JBrowse link NW_004955420 21,707,618 21,728,186 RGD:9068941
positive regulation of production of miRNAs involved in gene silencing by miRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bmp4 bone morphogenetic protein 4 JBrowse link NW_004955409 9,432,835 9,439,680 RGD:9068941
G Ddx5 DEAD-box helicase 5 JBrowse link NW_004955478 7,367,049 7,375,043 RGD:9068941
G Egfr epidermal growth factor receptor JBrowse link NW_004955456 321,222 456,431 RGD:9068941
G Il6 interleukin 6 JBrowse link NW_004955410 25,079,835 25,084,390 RGD:9068941
G Lin28a lin-28 homolog A JBrowse link NW_004955452 5,793,583 5,808,662 RGD:9068941
G Map2k1 mitogen-activated protein kinase kinase 1 JBrowse link NW_004955450 9,181,851 9,205,277 RGD:9068941
G Map2k2 mitogen-activated protein kinase kinase 2 JBrowse link NW_004955495 4,695,239 4,718,380 RGD:9068941
G Myocd myocardin JBrowse link NW_004955467 4,653,065 4,743,438 RGD:9068941
G Nr2f1 nuclear receptor subfamily 2 group F member 1 JBrowse link NW_004955418 18,615,548 18,622,984 RGD:9068941
G Ripk1 receptor interacting serine/threonine kinase 1 JBrowse link NW_004955465 10,127,907 10,167,895 RGD:9068941
G Tgfb1 transforming growth factor beta 1 JBrowse link NW_004955555 274,405 288,441 RGD:9068941
G Tp53 tumor protein p53 JBrowse link NW_004955467 9,241,391 9,256,716 RGD:9068941
positive regulation of RNA splicing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dyrk1a dual specificity tyrosine phosphorylation regulated kinase 1A JBrowse link NW_004955407 36,456,628 36,588,940 RGD:9068941
G Ern1 endoplasmic reticulum to nucleus signaling 1 JBrowse link NW_004955478 7,720,664 7,803,662 RGD:9068941
G Habp4 hyaluronan binding protein 4 JBrowse link NW_004955422 23,449,175 23,475,919 RGD:9068941
G Hnrnpk heterogeneous nuclear ribonucleoprotein K JBrowse link NW_004955432 3,246,090 3,257,774 RGD:9068941
G Hnrnpll heterogeneous nuclear ribonucleoprotein L like JBrowse link NW_004955441 6,229,692 6,269,051 RGD:9068941
G Khdrbs3 KH RNA binding domain containing, signal transduction associated 3 JBrowse link NW_004955461 9,751,057 9,926,211 RGD:9068941
G Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 JBrowse link NW_004955446 1,020,707 1,098,327 RGD:9068941
G Polr2a RNA polymerase II subunit A JBrowse link NW_004955467 9,423,540 9,447,530 RGD:9068941
G Rbm20 RNA binding motif protein 20 JBrowse link NW_004955485 590,094 769,604 RGD:9068941
G Rbm22 RNA binding motif protein 22 JBrowse link NW_004955415 3,895,272 3,905,801 RGD:9068941
G Setx senataxin JBrowse link NW_004955513 1,718,432 1,776,133 RGD:9068941
G Slc38a2 solute carrier family 38 member 2 JBrowse link NW_004955500 5,517,323 5,530,055 RGD:9068941
G Srsf1 serine and arginine rich splicing factor 1 JBrowse link NW_004955451 4,992,634 4,996,619 RGD:9068941
G Srsf5 serine and arginine rich splicing factor 5 JBrowse link NW_004955466 612,221 617,087 RGD:9068941
G U2af2 U2 small nuclear RNA auxiliary factor 2 JBrowse link NW_004955567 683,472 699,105 RGD:9068941
G Zpr1 ZPR1 zinc finger JBrowse link NW_004955412 18,117,957 18,127,552 RGD:9068941
positive regulation of rRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bud23 BUD23 rRNA methyltransferase and ribosome maturation factor JBrowse link NW_004955456 14,047,409 14,057,483 RGD:9068941
G Dimt1 DIMT1 rRNA methyltransferase and ribosome maturation factor JBrowse link NW_004955446 6,235,004 6,244,422 RGD:9068941
G Heatr1 HEAT repeat containing 1 JBrowse link NW_004955492 3,627,889 3,672,269 RGD:9068941
G Riok1 RIO kinase 1 JBrowse link NW_004955465 6,487,078 6,506,108 RGD:9068941
G Riok2 RIO kinase 2 JBrowse link NW_004955418 15,487,248 15,509,490 RGD:9068941
G Sirt7 sirtuin 7 JBrowse link NW_004955506 1,252,271 1,258,728 RGD:9068941
G Trmt112 tRNA methyltransferase subunit 11-2 JBrowse link NW_004955422 20,767,599 20,768,505 RGD:9068941
G Utp15 UTP15 small subunit processome component JBrowse link NW_004955425 27,018,938 27,035,715 RGD:9068941
G Wdr43 WD repeat domain 43 JBrowse link NW_004955469 10,777,332 10,835,577 RGD:9068941
G Wdr75 WD repeat domain 75 JBrowse link NW_004955403 9,352,615 9,383,206 RGD:9068941
pre-miRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adar adenosine deaminase RNA specific JBrowse link NW_004955545 1,078,319 1,106,938 RGD:9068941
G Ago1 argonaute RISC component 1 JBrowse link NW_004955452 13,935,028 13,967,281 RGD:9068941
G Ago2 argonaute RISC catalytic component 2 JBrowse link NW_004955461 14,194,268 14,260,949 RGD:9068941
G Ago3 argonaute RISC catalytic component 3 JBrowse link NW_004955452 13,977,487 14,108,729 RGD:9068941
G Ago4 argonaute RISC component 4 JBrowse link NW_004955452 13,882,416 13,922,590 RGD:9068941
G Dicer1 dicer 1, ribonuclease III JBrowse link NW_004955438 17,374,899 17,431,599 RGD:9068941
G Drosha drosha ribonuclease III JBrowse link NW_004955426 17,387,595 17,505,126 RGD:9068941
G Lin28a lin-28 homolog A JBrowse link NW_004955452 5,793,583 5,808,662 RGD:9068941
G Lin28b lin-28 homolog B JBrowse link NW_004955411 30,381,208 30,499,678 RGD:9068941
G Prkra protein activator of interferon induced protein kinase EIF2AK2 JBrowse link NW_004955403 18,394,609 18,410,381 RGD:9068941
G Tarbp2 TARBP2 subunit of RISC loading complex JBrowse link NW_004955458 793,753 798,755 RGD:9068941
G Tut4 terminal uridylyl transferase 4 JBrowse link NW_004955464 6,610,350 6,734,606 RGD:9068941
G Tut7 terminal uridylyl transferase 7 JBrowse link NW_004955432 1,268,217 1,330,385 RGD:9068941
pre-mRNA cleavage required for polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cpsf6 cleavage and polyadenylation specific factor 6 JBrowse link NW_004955458 15,684,040 15,708,011 RGD:9068941
G Cpsf7 cleavage and polyadenylation specific factor 7 JBrowse link NW_004955511 6,139,118 6,161,130 RGD:9068941
G Ncbp1 nuclear cap binding protein subunit 1 JBrowse link NW_004955419 27,778,300 27,819,878 RGD:9068941
G Ncbp2 nuclear cap binding protein subunit 2 JBrowse link NW_004955420 12,979,368 12,992,500 RGD:9068941
G Nudt21 nudix hydrolase 21 JBrowse link NW_004955433 14,220,356 14,234,423 RGD:9068941
G Tut1 terminal uridylyl transferase 1, U6 snRNA-specific JBrowse link NW_004955599 596,565 606,498 RGD:9068941
primary miRNA methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mettl3 methyltransferase like 3 JBrowse link NW_004955550 2,211,270 2,227,715 RGD:9068941
primary miRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dgcr8 DGCR8 microprocessor complex subunit JBrowse link NW_004955442 17,998,565 18,034,247 RGD:9068941
G Drosha drosha ribonuclease III JBrowse link NW_004955426 17,387,595 17,505,126 RGD:9068941
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 JBrowse link NW_004955410 28,032,193 28,042,459 RGD:9068941
G Mettl3 methyltransferase like 3 JBrowse link NW_004955550 2,211,270 2,227,715 RGD:9068941
G Pus10 pseudouridine synthase 10 JBrowse link NW_004955424 22,830,889 22,899,420 RGD:9068941
G Srrt serrate, RNA effector molecule JBrowse link NW_004955573 86,975 101,538 RGD:9068941
production of miRNAs involved in gene silencing by miRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adar adenosine deaminase RNA specific JBrowse link NW_004955545 1,078,319 1,106,938 RGD:9068941
G Ago1 argonaute RISC component 1 JBrowse link NW_004955452 13,935,028 13,967,281 RGD:9068941
G Ago2 argonaute RISC catalytic component 2 JBrowse link NW_004955461 14,194,268 14,260,949 RGD:9068941
G Ago3 argonaute RISC catalytic component 3 JBrowse link NW_004955452 13,977,487 14,108,729 RGD:9068941
G Ago4 argonaute RISC component 4 JBrowse link NW_004955452 13,882,416 13,922,590 RGD:9068941
G Dicer1 dicer 1, ribonuclease III JBrowse link NW_004955438 17,374,899 17,431,599 RGD:9068941
G Prkra protein activator of interferon induced protein kinase EIF2AK2 JBrowse link NW_004955403 18,394,609 18,410,381 RGD:9068941
G Pum1 pumilio RNA binding family member 1 JBrowse link NW_004955452 9,487,725 9,623,565 RGD:9068941
G Pum2 pumilio RNA binding family member 2 JBrowse link NW_004955469 2,810,825 2,886,911 RGD:9068941
G Rbm3 RNA binding motif protein 3 JBrowse link NW_004955543 166,891 173,987 RGD:9068941
G Snip1 Smad nuclear interacting protein 1 JBrowse link NW_004955452 15,352,080 15,365,545 RGD:9068941
G Spout1 SPOUT domain containing methyltransferase 1 JBrowse link NW_004955570 1,202,987 1,211,052 RGD:9068941
G Tarbp2 TARBP2 subunit of RISC loading complex JBrowse link NW_004955458 793,753 798,755 RGD:9068941
G Trim71 tripartite motif containing 71 JBrowse link NW_004955421 97,130 174,326 RGD:9068941
G Zc3h7a zinc finger CCCH-type containing 7A JBrowse link NW_004955442 6,847,224 6,884,537 RGD:9068941
G Zc3h7b zinc finger CCCH-type containing 7B JBrowse link NW_004955413 26,907,883 26,951,352 RGD:9068941
production of siRNA involved in RNA interference term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dicer1 dicer 1, ribonuclease III JBrowse link NW_004955438 17,374,899 17,431,599 RGD:9068941
G Prkra protein activator of interferon induced protein kinase EIF2AK2 JBrowse link NW_004955403 18,394,609 18,410,381 RGD:9068941
G Tarbp2 TARBP2 subunit of RISC loading complex JBrowse link NW_004955458 793,753 798,755 RGD:9068941
G Tert telomerase reverse transcriptase JBrowse link NW_004955504 649,248 669,796 RGD:9068941
recruitment of mRNA capping enzyme to RNA polymerase II holoenzyme complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ramac RNA guanine-7 methyltransferase activating subunit JBrowse link NW_004955416 13,686,997 13,691,792 RGD:9068941
regulation of alternative mRNA splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Celf3 CUGBP Elav-like family member 3 JBrowse link NW_004955589 700,965 715,684 RGD:9068941
G Celf4 CUGBP Elav-like family member 4 JBrowse link NW_004955402 23,607,160 23,898,495 RGD:9068941
G Celf5 CUGBP Elav-like family member 5 JBrowse link NW_004955495 5,182,758 5,214,724 RGD:9068941
G Celf6 CUGBP Elav-like family member 6 JBrowse link NW_004955450 4,822,125 4,853,572 RGD:9068941
G Ddx17 DEAD-box helicase 17 JBrowse link NW_004955413 24,646,317 24,664,614 RGD:9068941
G Ddx5 DEAD-box helicase 5 JBrowse link NW_004955478 7,367,049 7,375,043 RGD:9068941
G Dyrk1a dual specificity tyrosine phosphorylation regulated kinase 1A JBrowse link NW_004955407 36,456,628 36,588,940 RGD:9068941
G Fam172a family with sequence similarity 172 member A JBrowse link NW_004955418 18,213,824 18,624,082 RGD:9068941
G Fmr1 FMRP translational regulator 1 JBrowse link NW_004955498 566,741 594,837 RGD:9068941
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 JBrowse link NW_004955458 1,530,163 1,536,874 RGD:9068941
G Hnrnpl heterogeneous nuclear ribonucleoprotein L JBrowse link NW_004955468 668,177 683,540 RGD:9068941
G Hnrnpu heterogeneous nuclear ribonucleoprotein U JBrowse link NW_004955406 8,000,269 8,021,554 RGD:9068941
G Khdrbs1 KH RNA binding domain containing, signal transduction associated 1 JBrowse link NW_004955452 10,413,883 10,458,518 RGD:9068941
G Khdrbs3 KH RNA binding domain containing, signal transduction associated 3 JBrowse link NW_004955461 9,751,057 9,926,211 RGD:9068941
G Magoh mago homolog, exon junction complex subunit JBrowse link NW_004955464 5,919,289 5,929,152 RGD:9068941
G Mbnl2 muscleblind like splicing regulator 2 JBrowse link NW_004955404 12,979,671 13,132,239 RGD:9068941
G Myod1 myogenic differentiation 1 JBrowse link NW_004955414 32,523,959 32,526,575 RGD:9068941
G Nsrp1 nuclear speckle splicing regulatory protein 1 JBrowse link NW_004955481 3,142,009 3,192,060 RGD:9068941
G Ptbp1 polypyrimidine tract binding protein 1 JBrowse link NW_004955495 6,990,565 7,002,492 RGD:9068941
G Rbfox1 RNA binding fox-1 homolog 1 JBrowse link NW_004955442 10,345,261 10,694,602 RGD:9068941
G Rbfox2 RNA binding fox-1 homolog 2 JBrowse link NW_004955413 22,034,048 22,288,430 RGD:9068941
G Rbfox3 RNA binding fox-1 homolog 3 JBrowse link NW_004955506 3,243,637 3,646,789 RGD:9068941
G Rbm11 RNA binding motif protein 11 JBrowse link NW_004955407 16,071,186 16,082,332 RGD:9068941
G Rbm15 RNA binding motif protein 15 JBrowse link NW_004955435 13,846,297 13,854,639 RGD:9068941
G Rbm15b RNA binding motif protein 15B JBrowse link NW_004955532 3,080,207 3,082,312 RGD:9068941
G Rbm24 RNA binding motif protein 24 JBrowse link NW_004955483 8,705,533 8,716,772 RGD:9068941
G Rbm25 RNA binding motif protein 25 JBrowse link NW_004955523 2,213,766 2,270,417 RGD:9068941
G Rbm5 RNA binding motif protein 5 JBrowse link NW_004955532 1,929,540 1,957,297 RGD:9068941
G Rbm8a RNA binding motif protein 8A JBrowse link NW_004955568 164,050 166,162 RGD:9068941
G Rbmx RNA binding motif protein X-linked JBrowse link NW_004955489 8,280,842 8,286,252 RGD:9068941
G Rnps1 RNA binding protein with serine rich domain 1 JBrowse link NW_004955442 14,995,404 15,009,358 RGD:9068941
G Sap18 Sin3A associated protein 18 JBrowse link NW_004955497 1,862,026 1,869,974 RGD:9068941
G Srrm4 serine/arginine repetitive matrix 4 JBrowse link NW_004955455 12,318,529 12,473,420 RGD:9068941
G Srsf12 serine and arginine rich splicing factor 12 JBrowse link NW_004955411 15,851,482 15,918,864 RGD:9068941
G Srsf2 serine and arginine rich splicing factor 2 JBrowse link NW_004955506 5,569,280 5,572,164 RGD:9068941
G Srsf6 serine and arginine rich splicing factor 6 JBrowse link NW_004955445 13,663,474 13,669,102 RGD:9068941
G Thrap3 thyroid hormone receptor associated protein 3 JBrowse link NW_004955452 14,233,155 14,282,521 RGD:9068941
G Tra2b transformer 2 beta homolog JBrowse link NW_004955420 21,707,618 21,728,186 RGD:9068941
G Wtap WT1 associated protein JBrowse link NW_004955439 21,149,970 21,174,479 RGD:9068941
G Zbtb7a zinc finger and BTB domain containing 7A JBrowse link NW_004955495 4,747,905 4,754,066 RGD:9068941
regulation of mRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ahcyl1 adenosylhomocysteinase like 1 JBrowse link NW_004955435 13,487,441 13,525,924 RGD:9068941
G Papola poly(A) polymerase alpha JBrowse link NW_004955438 18,267,515 18,334,379 RGD:9068941
G Zfp36l1 ZFP36 ring finger protein like 1 JBrowse link NW_004955466 1,541,367 1,546,617 RGD:9068941
regulation of mRNA polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ncbp1 nuclear cap binding protein subunit 1 JBrowse link NW_004955419 27,778,300 27,819,878 RGD:9068941
G Ncbp2 nuclear cap binding protein subunit 2 JBrowse link NW_004955420 12,979,368 12,992,500 RGD:9068941
G Snrpa small nuclear ribonucleoprotein polypeptide A JBrowse link NW_004955578 579,087 590,010 RGD:9068941
G Zc3h3 zinc finger CCCH-type containing 3 JBrowse link NW_004955454 2,145,605 2,239,643 RGD:9068941
regulation of mRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdk11b cyclin dependent kinase 11B JBrowse link NW_004955486 9,251,242 9,270,218 RGD:9068941
G Dhx9 DExH-box helicase 9 JBrowse link NW_004955406 21,697,813 21,743,551 RGD:9068941
G Iws1 interacts with SUPT6H, CTD assembly factor 1 JBrowse link NW_004955459 3,021,320 3,063,363 RGD:9068941
G Nova1 NOVA alternative splicing regulator 1 JBrowse link NW_004955409 33,681,947 33,820,356 RGD:9068941
G Ptcd2 pentatricopeptide repeat domain 2 JBrowse link NW_004955575 1,126,978 1,156,727 RGD:9068941
G Safb scaffold attachment factor B JBrowse link NW_004955495 3,743,673 3,775,073 RGD:9068941
G Srpk1 SRSF protein kinase 1 JBrowse link NW_004955437 3,664,290 3,729,832 RGD:9068941
G Supt6h SPT6 homolog, histone chaperone and transcription elongation factor JBrowse link NW_004955481 4,462,270 4,497,364 RGD:9068941
regulation of mRNA splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase JBrowse link NW_004955506 5,577,735 5,588,307 RGD:9068941
G Khdrbs1 KH RNA binding domain containing, signal transduction associated 1 JBrowse link NW_004955452 10,413,883 10,458,518 RGD:9068941
G Khdrbs2 KH RNA binding domain containing, signal transduction associated 2 JBrowse link NW_004955502 1,486,799 1,944,298 RGD:9068941
G Khdrbs3 KH RNA binding domain containing, signal transduction associated 3 JBrowse link NW_004955461 9,751,057 9,926,211 RGD:9068941
G Larp7 La ribonucleoprotein 7, transcriptional regulator JBrowse link NW_004955457 14,178,674 14,200,164 RGD:9068941
G Mettl16 methyltransferase like 16 JBrowse link NW_004955481 762,030 836,299 RGD:9068941
G Rbm23 RNA binding motif protein 23 JBrowse link NW_004955409 37,384,872 37,392,896 RGD:9068941
G Rbm39 RNA binding motif protein 39 JBrowse link NW_004955422 25,719,771 25,755,757 RGD:9068941
G Son SON DNA and RNA binding protein JBrowse link NW_004955407 32,974,656 33,007,073 RGD:9068941
G Srsf10 serine and arginine rich splicing factor 10 JBrowse link NW_004955452 3,831,545 3,846,292 RGD:9068941
G Srsf3 serine and arginine rich splicing factor 3 JBrowse link NW_004955437 6,306,151 6,314,332 RGD:9068941
G Tia1 TIA1 cytotoxic granule associated RNA binding protein JBrowse link NW_004955424 14,887,722 14,920,844 RGD:9068941
G Ythdc1 YTH domain containing 1 JBrowse link NW_004955447 4,474,920 4,505,359 RGD:9068941
regulation of production of miRNAs involved in gene silencing by miRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tarbp2 TARBP2 subunit of RISC loading complex JBrowse link NW_004955458 793,753 798,755 RGD:9068941
regulation of RNA splicing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aff2 AF4/FMR2 family member 2 JBrowse link NW_004955498 1,012,323 1,497,031 RGD:9068941
G Ahnak AHNAK nucleoprotein JBrowse link NW_004955599 629,271 656,564 RGD:9068941
G Akap17a A-kinase anchoring protein 17A JBrowse link NW_004955499 1,119,658 1,130,250 RGD:9068941
G Brdt bromodomain testis associated JBrowse link NW_004955423 2,434,146 2,498,523 RGD:9068941
G Cdk12 cyclin dependent kinase 12 JBrowse link NW_004955451 14,244,392 14,345,885 RGD:9068941
G Celf1 CUGBP Elav-like family member 1 JBrowse link NW_004955422 742,017 817,649 RGD:9068941
G Clk1 CDC like kinase 1 JBrowse link NW_004955403 655,808 665,007 RGD:9068941
G Clk2 CDC like kinase 2 JBrowse link NW_004955545 1,716,294 1,727,187 RGD:9068941
G Clk3 CDC like kinase 3 JBrowse link NW_004955450 3,250,169 3,262,977 RGD:9068941
G Clk4 CDC like kinase 4 JBrowse link NW_004955408 1,726,283 1,747,314 RGD:9068941
G Esrp1 epithelial splicing regulatory protein 1 JBrowse link NW_004955417 10,813,831 10,881,238 RGD:9068941
G Esrp2 epithelial splicing regulatory protein 2 JBrowse link NW_004955484 8,426,453 8,433,902 RGD:9068941
G Fastk Fas activated serine/threonine kinase JBrowse link NW_004955491 5,513,482 5,516,681 RGD:9068941
G Hnrnpf heterogeneous nuclear ribonucleoprotein F JBrowse link NW_004955546 1,386,186 1,401,071 RGD:9068941
G Hnrnph1 heterogeneous nuclear ribonucleoprotein H1 JBrowse link NW_004955408 937,706 944,969 RGD:9068941
G Mbnl1 muscleblind like splicing regulator 1 JBrowse link NW_004955448 3,864,862 4,065,122 RGD:9068941
G Mbnl2 muscleblind like splicing regulator 2 JBrowse link NW_004955404 12,979,671 13,132,239 RGD:9068941
G Mbnl3 muscleblind like splicing regulator 3 JBrowse link NW_004955473 2,449,543 2,555,445 RGD:9068941
G Mettl4 methyltransferase like 4 JBrowse link NW_004955402 7,733,220 7,762,756 RGD:9068941
G Myod1 myogenic differentiation 1 JBrowse link NW_004955414 32,523,959 32,526,575 RGD:9068941
G Pqbp1 polyglutamine binding protein 1 JBrowse link NW_004955543 430,324 434,205 RGD:9068941
G Prx periaxin JBrowse link NW_004955578 852,789 873,319 RGD:9068941
G Rbm38 RNA binding motif protein 38 JBrowse link NW_004955445 2,036,314 2,050,882 RGD:9068941
G Rrp1b ribosomal RNA processing 1B JBrowse link NW_004955407 38,553,866 38,577,547 RGD:9068941
G Snrnp70 small nuclear ribonucleoprotein U1 subunit 70 JBrowse link NW_004955559 1,618,246 1,634,144 RGD:9068941
G Son SON DNA and RNA binding protein JBrowse link NW_004955407 32,974,656 33,007,073 RGD:9068941
G Srrm4 serine/arginine repetitive matrix 4 JBrowse link NW_004955455 12,318,529 12,473,420 RGD:9068941
G Tra2b transformer 2 beta homolog JBrowse link NW_004955420 21,707,618 21,728,186 RGD:9068941
G Znf326 zinc finger protein 326 JBrowse link NW_004955423 4,145,169 4,178,409 RGD:9068941
regulation of rRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ncl nucleolin JBrowse link NW_004955453 4,154,627 4,164,253 RGD:9068941
G Usp36 ubiquitin specific peptidase 36 JBrowse link NW_004955506 3,824,598 3,861,919 RGD:9068941
RNA 3' uridylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lin28a lin-28 homolog A JBrowse link NW_004955452 5,793,583 5,808,662 RGD:9068941
G Tent4a terminal nucleotidyltransferase 4A JBrowse link NW_004955504 4,443,051 4,476,373 RGD:9068941
G Tent4b terminal nucleotidyltransferase 4B JBrowse link NW_004955433 8,288,432 8,347,347 RGD:9068941
G Tut4 terminal uridylyl transferase 4 JBrowse link NW_004955464 6,610,350 6,734,606 RGD:9068941
G Tut7 terminal uridylyl transferase 7 JBrowse link NW_004955432 1,268,217 1,330,385 RGD:9068941
RNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lin28a lin-28 homolog A JBrowse link NW_004955452 5,793,583 5,808,662 RGD:9068941
G Lin28b lin-28 homolog B JBrowse link NW_004955411 30,381,208 30,499,678 RGD:9068941
G Tut4 terminal uridylyl transferase 4 JBrowse link NW_004955464 6,610,350 6,734,606 RGD:9068941
G Tut7 terminal uridylyl transferase 7 JBrowse link NW_004955432 1,268,217 1,330,385 RGD:9068941
RNA 5'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Piwil2 piwi like RNA-mediated gene silencing 2 JBrowse link NW_004955403 45,737,674 45,819,478 RGD:9068941
RNA splicing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ccar2 cell cycle and apoptosis regulator 2 JBrowse link NW_004955403 46,027,997 46,042,154 RGD:9068941
G Cdk12 cyclin dependent kinase 12 JBrowse link NW_004955451 14,244,392 14,345,885 RGD:9068941
G Celf3 CUGBP Elav-like family member 3 JBrowse link NW_004955589 700,965 715,684 RGD:9068941
G Ddx39b DExD-box helicase 39B JBrowse link NW_004955437 72,835 84,045 RGD:9068941
G Ddx47 DEAD-box helicase 47 JBrowse link NW_004955413 9,703,777 9,718,802 RGD:9068941
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 JBrowse link NW_004955458 1,530,163 1,536,874 RGD:9068941
G Ivns1abp influenza virus NS1A binding protein JBrowse link NW_004955406 23,866,705 23,881,184 RGD:9068941
G Luc7l3 LUC7 like 3 pre-mRNA splicing factor JBrowse link NW_004955451 11,027,949 11,062,521 RGD:9068941
G Mbnl1 muscleblind like splicing regulator 1 JBrowse link NW_004955448 3,864,862 4,065,122 RGD:9068941
G Rsrc1 arginine and serine rich coiled-coil 1 JBrowse link NW_004955448 8,947,553 9,249,465 RGD:9068941
G Scaf11 SR-related CTD associated factor 11 JBrowse link NW_004955500 5,187,112 5,229,929 RGD:9068941
G Scnm1 sodium channel modifier 1 JBrowse link NW_004955588 526,986 529,774 RGD:9068941
G Snrpf small nuclear ribonucleoprotein polypeptide F JBrowse link NW_004955405 32,236,876 32,242,716 RGD:9068941
G Srpk2 SRSF protein kinase 2 JBrowse link NW_004955410 9,807,936 10,034,760 RGD:9068941
G Srsf1 serine and arginine rich splicing factor 1 JBrowse link NW_004955451 4,992,634 4,996,619 RGD:9068941
G Srsf7 serine and arginine rich splicing factor 7 JBrowse link NW_004955441 6,416,709 6,423,185 RGD:9068941
G Taf15 TATA-box binding protein associated factor 15 JBrowse link NW_004955481 10,242,839 10,274,961 RGD:9068941
G Tardbp TAR DNA binding protein JBrowse link NW_004955486 2,656,121 2,674,808 RGD:9068941
G Tcerg1 transcription elongation regulator 1 JBrowse link NW_004955415 7,597,557 7,665,215 RGD:9068941
G U2af2 U2 small nuclear RNA auxiliary factor 2 JBrowse link NW_004955567 683,472 699,105 RGD:9068941
G Usb1 U6 snRNA biogenesis phosphodiesterase 1 JBrowse link NW_004955433 15,572,884 15,580,108 RGD:9068941
G Wbp11 WW domain binding protein 11 JBrowse link NW_004955413 11,533,303 11,549,067 RGD:9068941
G Wt1 WT1 transcription factor JBrowse link NW_004955476 10,464,688 10,504,473 RGD:9068941
RNA splicing, via transesterification reactions term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Scaf11 SR-related CTD associated factor 11 JBrowse link NW_004955500 5,187,112 5,229,929 RGD:9068941
G Slu7 SLU7 homolog, splicing factor JBrowse link NW_004955408 14,268,958 14,288,114 RGD:9068941
G Srsf10 serine and arginine rich splicing factor 10 JBrowse link NW_004955452 3,831,545 3,846,292 RGD:9068941
G Wdr83 WD repeat domain 83 JBrowse link NW_004955415 31,774,017 31,778,737 RGD:9068941
rRNA (guanine-N7)-methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bud23 BUD23 rRNA methyltransferase and ribosome maturation factor JBrowse link NW_004955456 14,047,409 14,057,483 RGD:9068941
G Trmt112 tRNA methyltransferase subunit 11-2 JBrowse link NW_004955422 20,767,599 20,768,505 RGD:9068941
rRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Eri1 exoribonuclease 1 JBrowse link NW_004955463 5,074,921 5,104,341 RGD:9068941
rRNA base methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nsun5 NOP2/Sun RNA methyltransferase 5 JBrowse link NW_004955456 14,331,890 14,336,650 RGD:9068941
rRNA methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dimt1 DIMT1 rRNA methyltransferase and ribosome maturation factor JBrowse link NW_004955446 6,235,004 6,244,422 RGD:9068941
G Fbl fibrillarin JBrowse link NW_004955578 1,176,713 1,186,873 RGD:9068941
G Mettl5 methyltransferase like 5 JBrowse link NW_004955449 4,795,925 4,806,757 RGD:9068941
G Nsun4 NOP2/Sun RNA methyltransferase 4 JBrowse link NW_004955464 11,934,146 11,962,513 RGD:9068941
G Trmt112 tRNA methyltransferase subunit 11-2 JBrowse link NW_004955422 20,767,599 20,768,505 RGD:9068941
G Zcchc4 zinc finger CCHC-type containing 4 JBrowse link NW_004955443 19,664,773 19,717,054 RGD:9068941
rRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bop1 BOP1 ribosomal biogenesis factor JBrowse link NW_004955454 2,882,694 2,907,177 RGD:9068941
G Ddx27 DEAD-box helicase 27 JBrowse link NW_004955445 8,881,062 8,899,895 RGD:9068941
G Ddx47 DEAD-box helicase 47 JBrowse link NW_004955413 9,703,777 9,718,802 RGD:9068941
G Exosc3 exosome component 3 JBrowse link NW_004955419 28,683,896 28,692,006 RGD:9068941
G Imp3 IMP U3 small nucleolar ribonucleoprotein 3 JBrowse link NW_004955450 2,690,814 2,692,336 RGD:9068941
G Lyar Ly1 antibody reactive JBrowse link NW_004955514 5,358,843 5,375,990 RGD:9068941
G Mtrex Mtr4 exosome RNA helicase JBrowse link NW_004955446 12,270,338 12,362,064 RGD:9068941
G Nol8 nucleolar protein 8 JBrowse link NW_004955515 5,448,530 5,473,278 RGD:9068941
G Npm3 nucleophosmin/nucleoplasmin 3 JBrowse link NW_004955485 8,510,404 8,512,198 RGD:9068941
G Nvl nuclear VCP like JBrowse link NW_004955520 1,010,966 1,069,176 RGD:9068941
G Pes1 pescadillo ribosomal biogenesis factor 1 JBrowse link NW_004955455 4,794,189 4,808,235 RGD:9068941
G Pin4 peptidylprolyl cis/trans isomerase, NIMA-interacting 4 JBrowse link NW_004955475 11,563,379 11,577,133 RGD:9068941
G Rnasel ribonuclease L JBrowse link NW_004955406 21,413,950 21,424,860 RGD:9068941
G Rpl11 ribosomal protein L11 JBrowse link NW_004955452 3,626,609 3,630,911 RGD:9068941
G Rpl14 ribosomal protein L14 JBrowse link NW_004955420 29,430,757 29,434,669 RGD:9068941
G Rpl26 ribosomal protein L26 JBrowse link NW_004955467 8,519,760 8,525,514 RGD:9068941
G Rpl27 ribosomal protein L27 JBrowse link NW_004955451 16,788,505 16,790,468 RGD:9068941
G Rpl35a ribosomal protein L35a JBrowse link NW_004955420 11,957,070 11,960,713 RGD:9068941
G Rpl5 ribosomal protein L5 JBrowse link NW_004955423 1,748,809 1,758,622 RGD:9068941
G Rpl7 ribosomal protein L7 JBrowse link NW_004955444 6,910,818 6,914,047 RGD:9068941
G Rps15 ribosomal protein S15 JBrowse link NW_004955495 6,492,968 6,495,435 RGD:9068941
G Rps16 ribosomal protein S16 JBrowse link NW_004955468 130,244 132,258 RGD:9068941
G Rps17 ribosomal protein S17 JBrowse link NW_004955416 14,039,596 14,042,908 RGD:9068941
G Rps19 ribosomal protein S19 JBrowse link NW_004955555 969,345 976,122 RGD:9068941
G Rps24 ribosomal protein S24 JBrowse link NW_004955437 14,435,822 14,442,662 RGD:9068941
G Rps27 ribosomal protein S27 JBrowse link NW_004955545 599,762 601,399 RGD:9068941
G Rps28 ribosomal protein S28 JBrowse link NW_004955563 1,073,556 1,074,149 RGD:9068941
G Rps6 ribosomal protein S6 JBrowse link NW_004955434 21,744,045 21,745,646 RGD:9068941
G Rps7 ribosomal protein S7 JBrowse link NW_004955487 3,793,168 3,798,007 RGD:9068941
G Rrp36 ribosomal RNA processing 36 JBrowse link NW_004955437 8,995,983 9,001,517 RGD:9068941
G Rrp9 ribosomal RNA processing 9, U3 small nucleolar RNA binding protein JBrowse link NW_004955532 3,584,111 3,591,234 RGD:9068941
G Sbds SBDS ribosome maturation factor JBrowse link NW_004955456 8,773,917 8,782,427 RGD:9068941
G Utp20 UTP20 small subunit processome component JBrowse link NW_004955405 36,829,984 36,910,149 RGD:9068941
G Wdr55 WD repeat domain 55 JBrowse link NW_004955418 33,237 37,676 RGD:9068941
G Wdr74 WD repeat domain 74 JBrowse link NW_004955599 408,076 413,770 RGD:9068941
rRNA pseudouridine synthesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dkc1 dyskerin pseudouridine synthase 1 JBrowse link NW_004955594 846,997 857,255 RGD:9068941
snoRNA guided rRNA pseudouridine synthesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dkc1 dyskerin pseudouridine synthase 1 JBrowse link NW_004955594 846,997 857,255 RGD:9068941
G Gar1 GAR1 ribonucleoprotein JBrowse link NW_004955496 476,061 483,030 RGD:9068941
G Nhp2 NHP2 ribonucleoprotein JBrowse link NW_004955408 2,090,772 2,094,453 RGD:9068941
G Nop10 NOP10 ribonucleoprotein JBrowse link NW_004955416 272,127 273,068 RGD:9068941
snoRNA polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tent4b terminal nucleotidyltransferase 4B JBrowse link NW_004955433 8,288,432 8,347,347 RGD:9068941
snRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Toe1 target of EGR1, exonuclease JBrowse link NW_004955464 12,924,185 12,927,567 RGD:9068941
snRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ints1 integrator complex subunit 1 JBrowse link NW_004955460 9,116,650 9,149,470 RGD:9068941
G Ints10 integrator complex subunit 10 JBrowse link NW_004955403 43,519,239 43,546,209 RGD:9068941
G Ints11 integrator complex subunit 11 JBrowse link NW_004955486 9,479,057 9,491,629 RGD:9068941
G Ints12 integrator complex subunit 12 JBrowse link NW_004955496 3,564,548 3,580,178 RGD:9068941
G Ints2 integrator complex subunit 2 JBrowse link NW_004955451 2,822,081 2,876,117 RGD:9068941
G Ints3 integrator complex subunit 3 JBrowse link NW_004955545 352,170 394,751 RGD:9068941
G Ints4 integrator complex subunit 4 JBrowse link NW_004955414 13,934,830 14,053,648 RGD:9068941
G Ints5 integrator complex subunit 5 JBrowse link NW_004955599 551,989 556,341 RGD:9068941
G Ints6 integrator complex subunit 6 JBrowse link NW_004955431 4,728,011 4,810,236 RGD:9068941
G Ints7 integrator complex subunit 7 JBrowse link NW_004955406 5,299,696 5,371,496 RGD:9068941
G Ints8 integrator complex subunit 8 JBrowse link NW_004955417 10,975,716 11,027,697 RGD:9068941
G Ints9 integrator complex subunit 9 JBrowse link NW_004955403 51,111,418 51,199,430 RGD:9068941
G Tut1 terminal uridylyl transferase 1, U6 snRNA-specific JBrowse link NW_004955599 596,565 606,498 RGD:9068941
spliceosomal complex assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Crnkl1 crooked neck pre-mRNA splicing factor 1 JBrowse link NW_004955415 28,158,351 28,171,335 RGD:9068941
G Ddx39b DExD-box helicase 39B JBrowse link NW_004955437 72,835 84,045 RGD:9068941
G Gcfc2 GC-rich sequence DNA-binding factor 2 JBrowse link NW_004955424 10,174,291 10,202,201 RGD:9068941
G Ncbp1 nuclear cap binding protein subunit 1 JBrowse link NW_004955419 27,778,300 27,819,878 RGD:9068941
G Prpf19 pre-mRNA processing factor 19 JBrowse link NW_004955511 5,546,212 5,552,368 RGD:9068941
G Rbm5 RNA binding motif protein 5 JBrowse link NW_004955532 1,929,540 1,957,297 RGD:9068941
G Scaf11 SR-related CTD associated factor 11 JBrowse link NW_004955500 5,187,112 5,229,929 RGD:9068941
G Srpk2 SRSF protein kinase 2 JBrowse link NW_004955410 9,807,936 10,034,760 RGD:9068941
G Usp39 ubiquitin specific peptidase 39 JBrowse link NW_004955424 1,867,910 1,893,338 RGD:9068941
G Zrsr2 zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2 JBrowse link NW_004955519 2,377,955 2,402,446 RGD:9068941
spliceosomal complex disassembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tfip11 tuftelin interacting protein 11 JBrowse link NW_004955455 1,083,816 1,097,233 RGD:9068941
spliceosomal snRNP assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Clns1a chloride nucleotide-sensitive channel 1A JBrowse link NW_004955414 14,219,909 14,239,450 RGD:9068941
G Ddx20 DEAD-box helicase 20 JBrowse link NW_004955435 15,209,640 15,219,698 RGD:9068941
G Gemin2 gem nuclear organelle associated protein 2 JBrowse link NW_004955409 22,142,082 22,153,699 RGD:9068941
G Gemin4 gem nuclear organelle associated protein 4 JBrowse link NW_004955481 2,294,406 2,301,297 RGD:9068941
G Gemin5 gem nuclear organelle associated protein 5 JBrowse link NW_004955408 9,136,490 9,179,087 RGD:9068941
G Gemin6 gem nuclear organelle associated protein 6 JBrowse link NW_004955441 6,456,482 6,461,027 RGD:9068941
G Gemin8 gem nuclear organelle associated protein 8 JBrowse link NW_004955519 4,205,660 4,228,174 RGD:9068941
G Prmt5 protein arginine methyltransferase 5 JBrowse link NW_004955409 37,369,507 37,378,034 RGD:9068941
G Prmt7 protein arginine methyltransferase 7 JBrowse link NW_004955484 8,299,427 8,352,465 RGD:9068941
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein JBrowse link NW_004955455 9,802,260 9,833,326 RGD:9068941
G Snrpb small nuclear ribonucleoprotein polypeptides B and B1 JBrowse link NW_004955415 13,522,638 13,530,725 RGD:9068941
G Snrpc small nuclear ribonucleoprotein polypeptide C JBrowse link NW_004955437 2,770,251 2,830,871 RGD:9068941
G Snrpd1 small nuclear ribonucleoprotein D1 polypeptide JBrowse link NW_004955402 10,283,970 10,294,869 RGD:9068941
G Snrpd2 small nuclear ribonucleoprotein D2 polypeptide JBrowse link NW_004955574 157,769 164,947 RGD:9068941
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide JBrowse link NW_004955455 8,021,946 8,045,325 RGD:9068941
G Snrpe small nuclear ribonucleoprotein polypeptide E JBrowse link NW_004955406 39,725,841 39,732,527 RGD:9068941
G Snrpf small nuclear ribonucleoprotein polypeptide F JBrowse link NW_004955405 32,236,876 32,242,716 RGD:9068941
G Snrpg small nuclear ribonucleoprotein polypeptide G JBrowse link NW_004955424 14,844,318 14,851,720 RGD:9068941
G Strap serine/threonine kinase receptor associated protein JBrowse link NW_004955413 12,533,422 12,558,138 RGD:9068941
G Tdrd6 tudor domain containing 6 JBrowse link NW_004955437 11,517,094 11,531,816 RGD:9068941
spliceosomal tri-snRNP complex assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link NW_004955437 321,367 325,556 RGD:9068941
G Prpf19 pre-mRNA processing factor 19 JBrowse link NW_004955511 5,546,212 5,552,368 RGD:9068941
G Prpf3 pre-mRNA processing factor 3 JBrowse link NW_004955413 429,259 455,449 RGD:9068941
G Prpf31 pre-mRNA processing factor 31 JBrowse link NW_004955604 125,489 136,209 RGD:9068941
G Prpf8 pre-mRNA processing factor 8 JBrowse link NW_004955481 1,499,634 1,530,670 RGD:9068941
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein JBrowse link NW_004955455 9,802,260 9,833,326 RGD:9068941
G Usp4 ubiquitin specific peptidase 4 JBrowse link NW_004955532 1,247,110 1,284,564 RGD:9068941
tRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ssb small RNA binding exonuclease protection factor La JBrowse link NW_004955449 4,806,468 4,815,175 RGD:9068941
tRNA 3'-terminal CCA addition term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Trnt1 tRNA nucleotidyl transferase 1 JBrowse link NW_004955421 10,192,065 10,211,527 RGD:9068941
tRNA 5'-leader removal term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pop1 POP1 homolog, ribonuclease P/MRP subunit JBrowse link NW_004955417 13,823,027 13,856,448 RGD:9068941
G Pop4 POP4 homolog, ribonuclease P/MRP subunit JBrowse link NW_004955468 7,983,394 7,994,863 RGD:9068941
G Pop5 POP5 homolog, ribonuclease P/MRP subunit JBrowse link NW_004955455 11,069,131 11,071,814 RGD:9068941
G Pop7 POP7 homolog, ribonuclease P/MRP subunit JBrowse link NW_004955573 217,809 218,915 RGD:9068941
G Rpp14 ribonuclease P/MRP subunit p14 JBrowse link NW_004955430 1,794,460 1,802,527 RGD:9068941
G Rpp21 ribonuclease P/MRP subunit p21 JBrowse link NW_004955583 467,197 468,564 RGD:9068941
G Rpp25 ribonuclease P and MRP subunit p25 JBrowse link NW_004955450 3,026,257 3,027,683 RGD:9068941
G Rpp30 ribonuclease P/MRP subunit p30 JBrowse link NW_004955425 2,276,006 2,302,882 RGD:9068941
G Rpp38 ribonuclease P/MRP subunit p38 JBrowse link NW_004955429 19,358,765 19,360,973 RGD:9068941
G Rpp40 ribonuclease P/MRP subunit p40 JBrowse link NW_004955465 8,540,500 8,550,255 RGD:9068941
G Ssb small RNA binding exonuclease protection factor La JBrowse link NW_004955449 4,806,468 4,815,175 RGD:9068941
tRNA C5-cytosine methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nsun6 NOP2/Sun RNA methyltransferase 6 JBrowse link NW_004955429 9,594,964 9,639,614 RGD:9068941
tRNA demethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Alkbh1 alkB homolog 1, histone H2A dioxygenase JBrowse link NW_004955438 1,531,114 1,556,483 RGD:9068941
tRNA dihydrouridine synthesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dus2 dihydrouridine synthase 2 JBrowse link NW_004955484 8,564,015 8,609,987 RGD:9068941
tRNA methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Alkbh8 alkB homolog 8, tRNA methyltransferase JBrowse link NW_004955412 9,875,905 9,923,728 RGD:9068941
G Bcdin3d BCDIN3 domain containing RNA methyltransferase JBrowse link NW_004955547 427,127 432,482 RGD:9068941
G Mettl2a methyltransferase like 2A JBrowse link NW_004955478 9,263,817 9,277,850 RGD:9068941
G Mettl6 methyltransferase like 6 JBrowse link NW_004955430 1,910,557 1,933,249 RGD:9068941
G Nsun2 NOP2/Sun RNA methyltransferase 2 JBrowse link NW_004955504 4,339,044 4,360,176 RGD:9068941
G Nsun6 NOP2/Sun RNA methyltransferase 6 JBrowse link NW_004955429 9,594,964 9,639,614 RGD:9068941
G Trdmt1 tRNA aspartic acid methyltransferase 1 JBrowse link NW_004955429 10,741,512 10,774,268 RGD:9068941
G Trmo tRNA methyltransferase O JBrowse link NW_004955419 27,553,040 27,568,417 RGD:9068941
G Trmt10a tRNA methyltransferase 10A JBrowse link NW_004955496 8,021,747 8,037,562 RGD:9068941
tRNA methylthiolation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdkal1 CDK5 regulatory subunit associated protein 1 like 1 JBrowse link NW_004955483 5,398,748 5,993,071 RGD:9068941
tRNA modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aars1 alanyl-tRNA synthetase 1 JBrowse link NW_004955484 3,090,678 3,115,224 RGD:9068941
G Ankrd16 ankyrin repeat domain 16 JBrowse link NW_004955421 22,520,707 22,535,618 RGD:9068941
G Dtwd1 DTW domain containing 1 JBrowse link NW_004955409 4,550,906 4,568,484 RGD:9068941
G Dtwd2 DTW domain containing 2 JBrowse link NW_004955408 38,497,442 38,609,561 RGD:9068941
G Mettl1 methyltransferase like 1 JBrowse link NW_004955458 5,478,445 5,481,964 RGD:9068941
G Wdr4 WD repeat domain 4 JBrowse link NW_004955407 39,044,328 39,066,277 RGD:9068941
tRNA N1-guanine methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Trmt10a tRNA methyltransferase 10A JBrowse link NW_004955496 8,021,747 8,037,562 RGD:9068941
tRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adat1 adenosine deaminase tRNA specific 1 JBrowse link NW_004955484 1,942,868 1,964,901 RGD:9068941
G Fars2 phenylalanyl-tRNA synthetase 2, mitochondrial JBrowse link NW_004955465 7,878,115 8,345,749 RGD:9068941
G Pop5 POP5 homolog, ribonuclease P/MRP subunit JBrowse link NW_004955455 11,069,131 11,071,814 RGD:9068941
G Ssb small RNA binding exonuclease protection factor La JBrowse link NW_004955449 4,806,468 4,815,175 RGD:9068941
G Thg1l tRNA-histidine guanylyltransferase 1 like JBrowse link NW_004955408 11,857,380 11,863,786 RGD:9068941
tRNA pseudouridine synthesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pus1 pseudouridine synthase 1 JBrowse link NW_004955482 749,265 756,964 RGD:9068941
G Pus10 pseudouridine synthase 10 JBrowse link NW_004955424 22,830,889 22,899,420 RGD:9068941
G Pus3 pseudouridine synthase 3 JBrowse link NW_004955412 26,941,837 26,951,524 RGD:9068941
G Pus7 pseudouridine synthase 7 JBrowse link NW_004955410 10,062,768 10,119,751 RGD:9068941
tRNA splicing, via endonucleolytic cleavage and ligation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Clp1 cleavage factor polyribonucleotide kinase subunit 1 JBrowse link NW_004955511 2,588,825 2,592,108 RGD:9068941
G Ddx1 DEAD-box helicase 1 JBrowse link NW_004955487 9,085,950 9,117,599 RGD:9068941
G Rtcb RNA 2',3'-cyclic phosphate and 5'-OH ligase JBrowse link NW_004955405 41,360,370 41,375,215 RGD:9068941
G Rtraf RNA transcription, translation and transport factor JBrowse link NW_004955409 11,034,815 11,049,400 RGD:9068941
G Trpt1 tRNA phosphotransferase 1 JBrowse link NW_004955422 20,851,806 20,854,349 RGD:9068941
G Tsen2 tRNA splicing endonuclease subunit 2 JBrowse link NW_004955429 14,970,105 14,997,459 RGD:9068941
G Tsen54 tRNA splicing endonuclease subunit 54 JBrowse link NW_004955553 2,367,476 2,376,704 RGD:9068941
G Zbtb8os zinc finger and BTB domain containing 8 opposite strand JBrowse link NW_004955452 10,944,281 10,955,250 RGD:9068941
tRNA thio-modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mocs3 molybdenum cofactor synthesis 3 JBrowse link NW_004955445 7,470,030 7,472,323 RGD:9068941
G Urm1 ubiquitin related modifier 1 JBrowse link NW_004955570 876,487 894,045 RGD:9068941
tRNA threonylcarbamoyladenosine modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Osgep O-sialoglycoprotein endopeptidase JBrowse link NW_004955550 1,266,191 1,273,093 RGD:9068941
G Tprkb TP53RK binding protein JBrowse link NW_004955424 11,961,994 11,969,610 RGD:9068941
tRNA wobble base cytosine methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nsun3 NOP2/Sun RNA methyltransferase 3 JBrowse link NW_004955407 3,322,246 3,397,289 RGD:9068941
tRNA wobble cytosine modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Alkbh1 alkB homolog 1, histone H2A dioxygenase JBrowse link NW_004955438 1,531,114 1,556,483 RGD:9068941
tRNA wobble uridine modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Alkbh8 alkB homolog 8, tRNA methyltransferase JBrowse link NW_004955412 9,875,905 9,923,728 RGD:9068941
G Elp3 elongator acetyltransferase complex subunit 3 JBrowse link NW_004955403 50,565,496 50,635,226 RGD:9068941
G Mocs3 molybdenum cofactor synthesis 3 JBrowse link NW_004955445 7,470,030 7,472,323 RGD:9068941
G Mto1 mitochondrial tRNA translation optimization 1 JBrowse link NW_004955493 8,636,093 8,655,090 RGD:9068941
G Urm1 ubiquitin related modifier 1 JBrowse link NW_004955570 876,487 894,045 RGD:9068941
tRNA-guanine transglycosylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Qtrt1 queuine tRNA-ribosyltransferase catalytic subunit 1 JBrowse link NW_004955495 1,851,861 1,857,599 RGD:9068941
G Qtrt2 queuine tRNA-ribosyltransferase accessory subunit 2 JBrowse link NW_004955427 14,139,024 14,169,402 RGD:9068941
U2 snRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ints1 integrator complex subunit 1 JBrowse link NW_004955460 9,116,650 9,149,470 RGD:9068941
U2-type prespliceosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sf3a1 splicing factor 3a subunit 1 JBrowse link NW_004955455 4,579,153 4,601,942 RGD:9068941
G Sf3a2 splicing factor 3a subunit 2 JBrowse link NW_004955495 5,896,648 5,904,287 RGD:9068941
G Sf3a3 splicing factor 3a subunit 3 JBrowse link NW_004955452 15,691,729 15,715,782 RGD:9068941
U6 snRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tut1 terminal uridylyl transferase 1, U6 snRNA-specific JBrowse link NW_004955599 596,565 606,498 RGD:9068941
G Usb1 U6 snRNA biogenesis phosphodiesterase 1 JBrowse link NW_004955433 15,572,884 15,580,108 RGD:9068941
wybutosine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tyw5 tRNA-yW synthesizing protein 5 JBrowse link NW_004955403 1,326,027 1,351,039 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11826
    metabolic process 7570
      organic substance metabolic process 7273
        macromolecule metabolic process 6317
          gene expression 3899
            RNA processing 507
              RNA 3'-end processing + 58
              RNA 5'-end processing + 16
              RNA capping + 7
              RNA splicing + 249
              chloroplast RNA processing + 0
              conversion of ds siRNA to ss siRNA + 1
              dsRNA processing + 49
              mRNA processing + 264
              mitochondrial RNA processing + 13
              ncRNA processing + 179
              tRNA-type intron splice site recognition and cleavage 0
Path 2
Term Annotations click to browse term
  biological_process 11826
    cellular process 11036
      cellular metabolic process 6992
        cellular nitrogen compound metabolic process 4036
          nucleobase-containing compound metabolic process 3545
            nucleic acid metabolic process 3259
              RNA metabolic process 2892
                RNA processing 507
                  RNA 3'-end processing + 58
                  RNA 5'-end processing + 16
                  RNA capping + 7
                  RNA splicing + 249
                  chloroplast RNA processing + 0
                  conversion of ds siRNA to ss siRNA + 1
                  dsRNA processing + 49
                  mRNA processing + 264
                  mitochondrial RNA processing + 13
                  ncRNA processing + 179
                  tRNA-type intron splice site recognition and cleavage 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.