Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:RNA processing
go back to main search page
Accession:GO:0006396 term browser browse the term
Definition:Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
Synonyms:alt_id: GO:0006394
 xref: Wikipedia:Post-transcriptional_modification


show annotations for term's descendants       view all columns           Sort by:
 
RNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ADAD1 adenosine deaminase domain containing 1 JBrowse link 19 17,728,106 17,826,412 RGD:13508589
G ADAD2 adenosine deaminase domain containing 2 JBrowse link 5 68,163,216 68,170,044 RGD:13508589
G ADAR adenosine deaminase RNA specific JBrowse link 7 42,762,021 42,785,192 RGD:13508589
G ADARB1 adenosine deaminase RNA specific B1 JBrowse link 31 38,715,529 38,799,353 RGD:13508589
G ADARB2 adenosine deaminase RNA specific B2 (inactive) JBrowse link 2 33,510,081 33,848,968 RGD:13508589
G ADAT1 adenosine deaminase tRNA specific 1 JBrowse link 5 75,191,114 75,235,735 RGD:13508589
G CCNL1 cyclin L1 RGD:13508589
G CHERP calcium homeostasis endoplasmic reticulum protein JBrowse link 20 46,002,532 46,020,445 RGD:13508589
G CLP1 cleavage factor polyribonucleotide kinase subunit 1 JBrowse link 18 38,528,700 38,531,899 RGD:13508589
G DDX54 DEAD-box helicase 54 JBrowse link 26 10,562,773 10,568,631 RGD:9068941
G DICER1 dicer 1, ribonuclease III JBrowse link 8 63,970,245 64,029,438 RGD:13508589
G DKC1 dyskerin pseudouridine synthase 1 JBrowse link X 122,838,787 122,850,870 RGD:13508589
G DROSHA drosha ribonuclease III RGD:13508589
G ELAVL4 ELAV like RNA binding protein 4 JBrowse link 15 10,885,161 10,977,383 RGD:9068941
G EXOSC1 exosome component 1 JBrowse link 28 10,729,186 10,738,978 RGD:13508589
G EXOSC10 exosome component 10 JBrowse link 2 84,942,801 84,964,129 RGD:13508589
G EXOSC8 exosome component 8 JBrowse link 25 3,698,399 3,708,342 RGD:13508589
G GRSF1 G-rich RNA sequence binding factor 1 JBrowse link 13 60,088,198 60,102,292 RGD:13508589
G HNRNPK heterogeneous nuclear ribonucleoprotein K JBrowse link 1 75,499,334 75,511,525 RGD:13508589
G HNRNPUL1 heterogeneous nuclear ribonucleoprotein U like 1 JBrowse link 1 112,661,955 112,699,112 RGD:13508589
G JAK2 Janus kinase 2 JBrowse link 1 93,321,055 93,438,898 RGD:13508589
G LARP6 La ribonucleoprotein 6, translational regulator JBrowse link 30 34,521,695 34,535,629 RGD:13508589
G LARP7 La ribonucleoprotein 7, transcriptional regulator JBrowse link 32 32,421,648 32,439,431 RGD:13508589
G MRM1 mitochondrial rRNA methyltransferase 1 JBrowse link 9 36,474,568 36,478,387 RGD:13508589
G MRM3 mitochondrial rRNA methyltransferase 3 JBrowse link 9 45,004,382 45,011,834 RGD:13508589
G MRPL44 mitochondrial ribosomal protein L44 JBrowse link 37 29,681,751 29,689,489 RGD:13508589
G NOL9 nucleolar protein 9 JBrowse link 5 60,372,573 60,395,805 RGD:13508589
G NRDE2 NRDE-2, necessary for RNA interference, domain containing JBrowse link 8 61,285,998 61,332,518 RGD:13508589
G PRPF39 pre-mRNA processing factor 39 JBrowse link 8 22,510,816 22,549,481 RGD:13508589
G RCL1 RNA terminal phosphate cyclase like 1 JBrowse link 1 93,144,164 93,204,233 RGD:13508589
G RNASEL ribonuclease L JBrowse link 7 15,978,055 16,001,604 RGD:13508589
G RNGTT RNA guanylyltransferase and 5'-phosphatase JBrowse link 12 47,944,600 48,306,789 RGD:9068941
G RTCA RNA 3'-terminal phosphate cyclase JBrowse link 6 49,711,984 49,759,977 RGD:13508589
G SART3 spliceosome associated factor 3, U4/U6 recycling protein JBrowse link 26 18,308,065 18,345,903 RGD:13508589
G SUGP1 SURP and G-patch domain containing 1 JBrowse link 20 43,891,572 43,922,991 RGD:13508589
G SUGP2 SURP and G-patch domain containing 2 JBrowse link 20 44,097,273 44,132,846 RGD:13508589
G TARBP1 TAR (HIV-1) RNA binding protein 1 JBrowse link 4 5,359,396 5,442,393 RGD:13508589
G TRMT2A tRNA methyltransferase 2 homolog A JBrowse link 26 29,219,549 29,224,155 RGD:13508589
G TRNT1 tRNA nucleotidyl transferase 1 JBrowse link 20 14,275,853 14,296,908 RGD:13508589
G TRUB1 TruB pseudouridine synthase family member 1 JBrowse link 28 25,690,729 25,727,491 RGD:13508589
G TRUB2 TruB pseudouridine synthase family member 2 JBrowse link 9 55,194,123 55,203,881 RGD:13508589
G U2SURP U2 snRNP associated SURP domain containing JBrowse link 23 38,596,544 38,646,784 RGD:13508589
G WDHD1 WD repeat and HMG-box DNA binding protein 1 JBrowse link 8 30,820,488 30,872,515 RGD:9068941
G ZFC3H1 zinc finger C3H1-type containing JBrowse link 10 13,159,286 13,216,561 RGD:13508589
7-methylguanosine cap hypermethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TGS1 trimethylguanosine synthase 1 JBrowse link 29 7,241,050 7,281,811 RGD:13508589
7-methylguanosine mRNA capping term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CMTR1 cap methyltransferase 1 JBrowse link 12 6,454,605 6,505,127 RGD:13508589
G CMTR2 cap methyltransferase 2 JBrowse link 5 77,117,795 77,124,995 RGD:13508589
G NCBP1 nuclear cap binding protein subunit 1 JBrowse link 11 54,938,250 54,974,536 RGD:13508589
G RAMAC RNA guanine-7 methyltransferase activating subunit JBrowse link 3 54,776,831 54,782,047 RGD:9068941
G RNGTT RNA guanylyltransferase and 5'-phosphatase JBrowse link 12 47,944,600 48,306,789 RGD:13508589
G RNMT RNA guanine-7 methyltransferase JBrowse link 1 24,465,634 24,499,526 RGD:13508589
7-methylguanosine RNA capping term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TGS1 trimethylguanosine synthase 1 JBrowse link 29 7,241,050 7,281,811 RGD:13508589
alternative mRNA splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CDK13 cyclin dependent kinase 13 JBrowse link 18 9,801,350 9,920,401 RGD:13508589
G CELF4 CUGBP Elav-like family member 4 JBrowse link 7 52,940,941 53,012,206 RGD:9068941
G DDX17 DEAD-box helicase 17 JBrowse link 10 26,282,592 26,303,128 RGD:13508589
G DDX5 DEAD-box helicase 5 JBrowse link 9 12,300,706 12,307,931 RGD:13508589
G DHX9 DExH-box helicase 9 JBrowse link 7 16,233,763 16,292,576 RGD:13508589
G ESRP1 epithelial splicing regulatory protein 1 JBrowse link 29 39,322,516 39,388,363 RGD:9068941
G ESRP2 epithelial splicing regulatory protein 2 JBrowse link 5 81,287,330 81,297,533 RGD:13508589
G HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 JBrowse link 27 1,013,459 1,020,083 RGD:9068941
G HNRNPM heterogeneous nuclear ribonucleoprotein M JBrowse link 20 52,993,934 53,034,608 RGD:13508589
G INSR insulin receptor JBrowse link 20 52,017,261 52,136,061 RGD:9068941
G KDM1A lysine demethylase 1A JBrowse link 2 76,313,742 76,375,716 RGD:9068941
G MBNL1 muscleblind like splicing regulator 1 JBrowse link 23 46,697,755 46,941,300 RGD:9068941
G PQBP1 polyglutamine binding protein 1 JBrowse link X 42,056,660 42,060,508 RGD:13508589
G PUF60 poly(U) binding splicing factor 60 JBrowse link 13 37,375,781 37,387,969 RGD:13508589
G RBM17 RNA binding motif protein 17 JBrowse link 2 29,828,720 29,853,922 RGD:13508589
G RSRC1 arginine and serine rich coiled-coil 1 JBrowse link 23 51,492,912 51,890,603 RGD:13508589
G SCNM1 sodium channel modifier 1 JBrowse link 17 60,231,034 60,233,349 RGD:9068941
G SFPQ splicing factor proline and glutamine rich JBrowse link 15 6,879,955 6,896,309 RGD:13508589
G SFSWAP splicing factor SWAP JBrowse link 26 1,035,059 1,104,730 RGD:13508589
G SLU7 SLU7 homolog, splicing factor JBrowse link 4 50,314,063 50,328,999 RGD:13508589
G SRSF1 serine and arginine rich splicing factor 1 JBrowse link 9 32,692,517 32,696,325 RGD:9068941
G SRSF6 serine and arginine rich splicing factor 6 JBrowse link 24 31,217,190 31,222,852 RGD:13508589
box C/D snoRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FBL fibrillarin JBrowse link 1 113,632,899 113,643,805 RGD:13508589
G LARP7 La ribonucleoprotein 7, transcriptional regulator JBrowse link 32 32,421,648 32,439,431 RGD:9068941
box H/ACA snoRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DKC1 dyskerin pseudouridine synthase 1 JBrowse link X 122,838,787 122,850,870 RGD:13508589
G PARN poly(A)-specific ribonuclease JBrowse link 6 28,629,137 28,783,671 RGD:9068941
cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BOP1 BOP1 ribosomal biogenesis factor JBrowse link 13 37,698,635 37,723,803 RGD:9068941
G NOL9 nucleolar protein 9 JBrowse link 5 60,372,573 60,395,805 RGD:13508589
G NPM1 nucleophosmin 1 JBrowse link 4 40,756,464 40,770,174 RGD:9068941
cleavage involved in rRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NHP2 NHP2 ribonucleoprotein JBrowse link 11 3,389,549 3,393,010 RGD:13508589
G NOB1 NIN1 (RPN12) binding protein 1 homolog JBrowse link 5 79,958,145 79,966,166 RGD:13508589
G RRP36 ribosomal RNA processing 36 JBrowse link 12 11,549,179 11,553,925 RGD:13508589
conversion of ds siRNA to ss siRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DICER1 dicer 1, ribonuclease III JBrowse link 8 63,970,245 64,029,438 RGD:9068941
conversion of ds siRNA to ss siRNA involved in RNA interference term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DICER1 dicer 1, ribonuclease III JBrowse link 8 63,970,245 64,029,438 RGD:13508589
conversion of methionyl-tRNA to N-formyl-methionyl-tRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LOC100855730 cytosolic 10-formyltetrahydrofolate dehydrogenase JBrowse link 20 354,954 398,401 RGD:13508589
G MTFMT mitochondrial methionyl-tRNA formyltransferase JBrowse link 30 29,388,600 29,415,578 RGD:13508589
endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ABT1 activator of basal transcription 1 JBrowse link 35 24,357,502 24,360,731 RGD:13508589
G FCF1 FCF1 rRNA-processing protein JBrowse link 8 47,842,123 47,856,592 RGD:9068941
G RCL1 RNA terminal phosphate cyclase like 1 JBrowse link 1 93,144,164 93,204,233 RGD:9068941
G TBL3 transducin beta like 3 JBrowse link 6 38,956,227 38,962,189 RGD:13508589
G UTP23 UTP23 small subunit processome component JBrowse link 13 16,213,131 16,219,726 RGD:13508589
endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ABT1 activator of basal transcription 1 JBrowse link 35 24,357,502 24,360,731 RGD:13508589
G FCF1 FCF1 rRNA-processing protein JBrowse link 8 47,842,123 47,856,592 RGD:9068941
G KRI1 KRI1 homolog JBrowse link 20 50,610,386 50,618,814 RGD:13508589
G RCL1 RNA terminal phosphate cyclase like 1 JBrowse link 1 93,144,164 93,204,233 RGD:9068941
G RPP40 ribonuclease P/MRP subunit p40 JBrowse link 35 5,109,324 5,119,713 RGD:13508589
G RPS21 ribosomal protein S21 JBrowse link 24 46,361,607 46,362,315 RGD:13508589
G RRS1 ribosome biogenesis regulator 1 homolog JBrowse link 29 16,016,134 16,018,046 RGD:13508589
endonucleolytic cleavage involved in tRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G RPP40 ribonuclease P/MRP subunit p40 JBrowse link 35 5,109,324 5,119,713 RGD:13508589
endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BMS1 BMS1 ribosome biogenesis factor JBrowse link 28 4,178,625 4,235,749 RGD:13508589
G LOC610048 pre-rRNA-processing protein TSR1 homolog JBrowse link 12 16,856,138 16,860,100 RGD:13508589
G RCL1 RNA terminal phosphate cyclase like 1 JBrowse link 1 93,144,164 93,204,233 RGD:13508589
G TSR1 TSR1 ribosome maturation factor JBrowse link 9 46,421,656 46,432,938 RGD:13508589
endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G RPS21 ribosomal protein S21 JBrowse link 24 46,361,607 46,362,315 RGD:13508589
endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ABT1 activator of basal transcription 1 JBrowse link 35 24,357,502 24,360,731 RGD:13508589
G TBL3 transducin beta like 3 JBrowse link 6 38,956,227 38,962,189 RGD:13508589
enzyme-directed rRNA 2'-O-methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FTSJ3 FtsJ RNA 2'-O-methyltransferase 3 JBrowse link 9 11,774,625 11,783,154 RGD:13508589
enzyme-directed rRNA pseudouridine synthesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DKC1 dyskerin pseudouridine synthase 1 JBrowse link X 122,838,787 122,850,870 RGD:13508589
G RPUSD1 RNA pseudouridine synthase domain containing 1 JBrowse link 6 39,815,405 39,818,151 RGD:13508589
G RPUSD2 RNA pseudouridine synthase domain containing 2 JBrowse link 30 7,735,759 7,740,338 RGD:13508589
G RPUSD3 RNA pseudouridine synthase D3 JBrowse link 20 8,406,549 8,414,029 RGD:13508589
G RPUSD4 RNA pseudouridine synthase D4 JBrowse link 5 8,300,421 8,311,193 RGD:13508589
G TSR3 TSR3 ribosome maturation factor JBrowse link 6 39,418,737 39,421,524 RGD:13508589
exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ERI1 exoribonuclease 1 JBrowse link 16 35,441,304 35,499,501 RGD:13508589
G ERI2 ERI1 exoribonuclease family member 2 JBrowse link 6 24,549,760 24,557,568 RGD:13508589
G ERI3 ERI1 exoribonuclease family member 3 JBrowse link 15 15,948,986 16,076,804 RGD:13508589
G EXOSC10 exosome component 10 JBrowse link 2 84,942,801 84,964,129 RGD:13508589
G EXOSC2 exosome component 2 JBrowse link 9 53,266,396 53,276,236 RGD:13508589
G EXOSC3 exosome component 3 JBrowse link 11 54,072,993 54,079,024 RGD:13508589
G EXOSC7 exosome component 7 JBrowse link 20 43,343,573 43,379,614 RGD:13508589
G EXOSC8 exosome component 8 JBrowse link 25 3,698,399 3,708,342 RGD:13508589
G EXOSC9 exosome component 9 JBrowse link 19 18,324,117 18,336,628 RGD:13508589
generation of catalytic spliceosome for first transesterification step term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PRPF19 pre-mRNA processing factor 19 JBrowse link 18 55,389,902 55,400,241 RGD:13508589
G XAB2 XPA binding protein 2 JBrowse link 20 52,392,521 52,406,071 RGD:13508589
generation of catalytic spliceosome for second transesterification step term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ISY1 ISY1 splicing factor homolog JBrowse link 20 2,945,636 2,972,245 RGD:13508589
G PRPF18 pre-mRNA processing factor 18 JBrowse link 2 22,868,184 22,922,647 RGD:13508589
maturation of 5.8S rRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G C1D C1D nuclear receptor corepressor JBrowse link 10 67,160,168 67,165,737 RGD:13508589
G EIF6 eukaryotic translation initiation factor 6 JBrowse link 24 24,259,623 24,266,453 RGD:13508589
G EXOSC10 exosome component 10 JBrowse link 2 84,942,801 84,964,129 RGD:9068941
G EXOSC4 exosome component 4 JBrowse link 13 37,574,359 37,576,331 RGD:13508589
G LAS1L LAS1 like ribosome biogenesis factor JBrowse link X 50,524,199 50,543,838 RGD:13508589
G MAK16 MAK16 homolog JBrowse link 16 31,167,001 31,180,093 RGD:13508589
G MPHOSPH6 M-phase phosphoprotein 6 JBrowse link 5 69,887,092 69,909,647 RGD:13508589
G MTREX Mtr4 exosome RNA helicase JBrowse link 2 42,660,448 42,763,133 RGD:13508589
G NOL9 nucleolar protein 9 JBrowse link 5 60,372,573 60,395,805 RGD:9068941
G NSA2 NSA2 ribosome biogenesis factor JBrowse link 2 57,304,160 57,311,836 RGD:13508589
G PRKDC protein kinase, DNA-activated, catalytic subunit JBrowse link 29 24,904 243,926 RGD:13508589
G RPF1 ribosome production factor 1 homolog JBrowse link 6 63,399,102 63,419,407 RGD:13508589
G RRP15 ribosomal RNA processing 15 homolog JBrowse link 38 13,377,518 13,416,809 RGD:13508589
maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FTSJ3 FtsJ RNA 2'-O-methyltransferase 3 JBrowse link 9 11,774,625 11,783,154 RGD:13508589
G PES1 pescadillo ribosomal biogenesis factor 1 JBrowse link 26 23,655,994 23,672,707 RGD:13508589
G URB1 URB1 ribosome biogenesis homolog JBrowse link 31 27,087,196 27,158,144 RGD:13508589
G WDR12 WD repeat domain 12 JBrowse link 37 11,762,598 11,787,025 RGD:13508589
maturation of 5S rRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SART1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP JBrowse link 18 51,297,419 51,313,804 RGD:13508589
maturation of LSU-rRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G EIF6 eukaryotic translation initiation factor 6 JBrowse link 24 24,259,623 24,266,453 RGD:13508589
G GTF3C6 general transcription factor IIIC subunit 6 JBrowse link 12 67,491,034 67,505,012 RGD:13508589
G LAS1L LAS1 like ribosome biogenesis factor JBrowse link X 50,524,199 50,543,838 RGD:13508589
G MAK16 MAK16 homolog JBrowse link 16 31,167,001 31,180,093 RGD:13508589
G MRPL1 mitochondrial ribosomal protein L1 JBrowse link 32 2,307,485 2,457,587 RGD:13508589
G NHP2 NHP2 ribonucleoprotein JBrowse link 11 3,389,549 3,393,010 RGD:13508589
G NOP2 NOP2 nucleolar protein JBrowse link 27 38,441,259 38,453,946 RGD:13508589
G NSA2 NSA2 ribosome biogenesis factor JBrowse link 2 57,304,160 57,311,836 RGD:13508589
G RPF1 ribosome production factor 1 homolog JBrowse link 6 63,399,102 63,419,407 RGD:13508589
G RPF2 ribosome production factor 2 homolog JBrowse link 12 67,516,991 67,566,287 RGD:13508589
G RPL10A ribosomal protein L10a JBrowse link 12 4,601,760 4,604,142 RGD:13508589
G RPL7A ribosomal protein L7a JBrowse link 9 49,783,635 49,786,328 RGD:13508589
G RRP15 ribosomal RNA processing 15 homolog JBrowse link 38 13,377,518 13,416,809 RGD:13508589
G RSL1D1 ribosomal L1 domain containing 1 JBrowse link 6 30,982,391 30,995,137 RGD:13508589
G SNU13 small nuclear ribonucleoprotein 13 JBrowse link 10 23,622,897 23,631,526 RGD:13508589
maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BOP1 BOP1 ribosomal biogenesis factor JBrowse link 13 37,698,635 37,723,803 RGD:9068941
G DDX18 DEAD-box helicase 18 JBrowse link 19 32,014,586 32,030,634 RGD:13508589
G FTSJ3 FtsJ RNA 2'-O-methyltransferase 3 JBrowse link 9 11,774,625 11,783,154 RGD:13508589
G GTPBP4 GTP binding protein 4 JBrowse link 2 33,936,629 33,955,947 RGD:13508589
G NIFK nucleolar protein interacting with the FHA domain of MKI67 JBrowse link 19 28,486,049 28,498,711 RGD:13508589
G PES1 pescadillo ribosomal biogenesis factor 1 JBrowse link 26 23,655,994 23,672,707 RGD:13508589
G RPF2 ribosome production factor 2 homolog JBrowse link 12 67,516,991 67,566,287 RGD:13508589
G RPL35 ribosomal protein L35 JBrowse link 9 58,153,433 58,158,597 RGD:13508589
G RPL7 ribosomal protein L7 JBrowse link 29 21,881,048 21,884,401 RGD:13508589
G RPL7L1 ribosomal protein L7 like 1 JBrowse link 12 11,445,225 11,451,147 RGD:13508589
G URB1 URB1 ribosome biogenesis homolog JBrowse link 31 27,087,196 27,158,144 RGD:13508589
G WDR12 WD repeat domain 12 JBrowse link 37 11,762,598 11,787,025 RGD:13508589
G ZNHIT3 zinc finger HIT-type containing 3 JBrowse link 9 36,378,226 36,383,906 RGD:13508589
G ZNHIT6 zinc finger HIT-type containing 6 JBrowse link 6 62,335,344 62,393,418 RGD:13508589
maturation of SSU-rRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DDX52 DExD-box helicase 52 JBrowse link 9 37,368,243 37,390,526 RGD:13508589
G LSM6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 15 44,651,830 44,666,418 RGD:13508589
G NOB1 NIN1 (RPN12) binding protein 1 homolog JBrowse link 5 79,958,145 79,966,166 RGD:13508589
G NOL11 nucleolar protein 11 JBrowse link 9 12,817,669 12,845,632 RGD:13508589
G NOP14 NOP14 nucleolar protein JBrowse link 3 61,330,987 61,350,596 RGD:13508589
G RIOK1 RIO kinase 1 JBrowse link 35 7,355,484 7,383,537 RGD:13508589
G RIOK2 RIO kinase 2 JBrowse link 3 12,548,830 12,571,312 RGD:13508589
G RIOK3 RIO kinase 3 JBrowse link 7 64,835,810 64,860,464 RGD:13508589
G RPS19 ribosomal protein S19 JBrowse link 1 112,418,800 112,427,445 RGD:9068941
G SNU13 small nuclear ribonucleoprotein 13 JBrowse link 10 23,622,897 23,631,526 RGD:13508589
G SRFBP1 serum response factor binding protein 1 JBrowse link 11 11,937,274 12,001,841 RGD:13508589
G TSR3 TSR3 ribosome maturation factor JBrowse link 6 39,418,737 39,421,524 RGD:13508589
G UTP4 UTP4 small subunit processome component JBrowse link 5 80,474,219 80,508,953 RGD:9068941
G WDR3 WD repeat domain 3 JBrowse link 17 55,225,097 55,254,404 RGD:13508589
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BMS1 BMS1 ribosome biogenesis factor JBrowse link 28 4,178,625 4,235,749 RGD:13508589
G BYSL bystin like JBrowse link 12 10,580,881 10,592,313 RGD:13508589
G DCAF13 DDB1 and CUL4 associated factor 13 JBrowse link 13 4,835,147 4,860,706 RGD:13508589
G DHX37 DEAH-box helicase 37 JBrowse link 26 4,964,038 4,993,932 RGD:13508589
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit JBrowse link 1 110,173,781 110,191,612 RGD:9068941
G FAM207A family with sequence similarity 207 member A JBrowse link 31 38,559,175 38,593,152 RGD:13508589
G GTF2H5 general transcription factor IIH subunit 5 JBrowse link 1 47,669,196 47,681,370 RGD:13508589
G HEATR1 HEAT repeat containing 1 JBrowse link 4 3,501,191 3,547,212 RGD:13508589
G HELB DNA helicase B JBrowse link 10 8,766,023 8,797,055 RGD:13508589
G LOC100683749 40S ribosomal protein S14 pseudogene JBrowse link 11 54,482,786 54,483,327 RGD:13508589
G LOC610048 pre-rRNA-processing protein TSR1 homolog JBrowse link 12 16,856,138 16,860,100 RGD:13508589
G MRPS11 mitochondrial ribosomal protein S11 JBrowse link 3 51,705,698 51,714,922 RGD:13508589
G NGDN neuroguidin JBrowse link 8 3,704,430 3,713,517 RGD:13508589
G NOL10 nucleolar protein 10 JBrowse link 17 7,490,387 7,574,342 RGD:13508589
G PWP2 PWP2 small subunit processome component JBrowse link 31 38,000,181 38,012,882 RGD:13508589
G RPS16 ribosomal protein S16 JBrowse link 1 113,795,239 113,798,380 RGD:13508589
G RPS19 ribosomal protein S19 JBrowse link 1 112,418,800 112,427,445 RGD:9068941
G RPS8 ribosomal protein S8 JBrowse link 15 15,542,569 15,545,285 RGD:13508589
G TSR1 TSR1 ribosome maturation factor JBrowse link 9 46,421,656 46,432,938 RGD:13508589
G TSR2 TSR2 ribosome maturation factor JBrowse link X 46,189,810 46,194,949 RGD:13508589
G UTP25 UTP25 small subunit processor component JBrowse link 7 8,477,026 8,512,713 RGD:13508589
G UTP3 UTP3 small subunit processome component JBrowse link 13 59,994,445 59,996,221 RGD:13508589
G UTP4 UTP4 small subunit processome component JBrowse link 5 80,474,219 80,508,953 RGD:13508589
G UTP6 UTP6 small subunit processome component JBrowse link 9 41,067,133 41,094,352 RGD:13508589
G WDR46 WD repeat domain 46 JBrowse link 12 2,721,262 2,729,365 RGD:13508589
mitochondrial mRNA polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PNPT1 polyribonucleotide nucleotidyltransferase 1 JBrowse link 10 56,478,771 56,520,992 RGD:13508589
mitochondrial mRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TBRG4 transforming growth factor beta regulator 4 RGD:13508589
mitochondrial RNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PNPT1 polyribonucleotide nucleotidyltransferase 1 JBrowse link 10 56,478,771 56,520,992 RGD:13508589
G SUPV3L1 Suv3 like RNA helicase JBrowse link 4 20,313,902 20,342,375 RGD:13508589
mitochondrial RNA 5'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PNPT1 polyribonucleotide nucleotidyltransferase 1 JBrowse link 10 56,478,771 56,520,992 RGD:13508589
G TRMT10C tRNA methyltransferase 10C, mitochondrial RNase P subunit JBrowse link 33 7,944,675 7,949,402 RGD:9068941
mitochondrial RNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FASTKD5 FAST kinase domains 5 JBrowse link 24 18,124,249 18,136,415 RGD:13508589
G PNPT1 polyribonucleotide nucleotidyltransferase 1 JBrowse link 10 56,478,771 56,520,992 RGD:13508589
mitochondrial tRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HSD17B10 hydroxysteroid 17-beta dehydrogenase 10 JBrowse link X 45,165,272 45,167,683 RGD:13508589
G TRMT10C tRNA methyltransferase 10C, mitochondrial RNase P subunit JBrowse link 33 7,944,675 7,949,402 RGD:13508589
G TRNT1 tRNA nucleotidyl transferase 1 JBrowse link 20 14,275,853 14,296,908 RGD:13508589
mitochondrial tRNA 3'-trailer cleavage, endonucleolytic term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ELAC2 elaC ribonuclease Z 2 JBrowse link 5 36,957,901 36,978,646 RGD:13508589
mitochondrial tRNA 5'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HSD17B10 hydroxysteroid 17-beta dehydrogenase 10 JBrowse link X 45,165,272 45,167,683 RGD:13508589
G PRORP protein only RNase P catalytic subunit JBrowse link 8 13,885,734 14,007,224 RGD:9068941
G TRMT10C tRNA methyltransferase 10C, mitochondrial RNase P subunit JBrowse link 33 7,944,675 7,949,402 RGD:13508589
mitochondrial tRNA methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HSD17B10 hydroxysteroid 17-beta dehydrogenase 10 JBrowse link X 45,165,272 45,167,683 RGD:13508589
G TRMT5 tRNA methyltransferase 5 JBrowse link 8 35,952,183 35,960,681 RGD:13508589
G TRMT61B tRNA methyltransferase 61B JBrowse link 17 22,742,380 22,757,362 RGD:13508589
mitochondrial tRNA modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CDK5RAP1 CDK5 regulatory subunit associated protein 1 JBrowse link 24 22,588,354 22,628,525 RGD:13508589
mitochondrial tRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TRMT10A tRNA methyltransferase 10A JBrowse link 32 21,554,096 21,570,894 RGD:13508589
G TRMT10B tRNA methyltransferase 10B JBrowse link 11 54,056,251 54,071,870 RGD:13508589
G TRMT10C tRNA methyltransferase 10C, mitochondrial RNase P subunit JBrowse link 33 7,944,675 7,949,402 RGD:13508589
mitochondrial tRNA wobble uridine modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G MTO1 mitochondrial tRNA translation optimization 1 JBrowse link 12 35,533,766 35,563,058 RGD:13508589
mRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CLP1 cleavage factor polyribonucleotide kinase subunit 1 JBrowse link 18 38,528,700 38,531,899 RGD:13508589
G RPRD1A regulation of nuclear pre-mRNA domain containing 1A JBrowse link 7 54,105,270 54,187,280 RGD:13508589
G RPRD1B regulation of nuclear pre-mRNA domain containing 1B JBrowse link 24 26,552,487 26,604,586 RGD:13508589
G RPRD2 regulation of nuclear pre-mRNA domain containing 2 JBrowse link 17 59,587,157 59,676,885 RGD:13508589
G ZC3H3 zinc finger CCCH-type containing 3 JBrowse link 13 37,128,915 37,214,643 RGD:13508589
mRNA 3'-end processing by stem-loop binding and cleavage term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CPSF2 cleavage and polyadenylation specific factor 2 JBrowse link 8 1,364,399 1,398,496 RGD:13508589
G CPSF3 cleavage and polyadenylation specific factor 3 JBrowse link 17 6,537,404 6,576,121 RGD:13508589
G LSM11 LSM11, U7 small nuclear RNA associated JBrowse link 4 52,532,660 52,546,273 RGD:9068941
G SLBP stem-loop binding protein JBrowse link 3 62,386,982 62,401,541 RGD:13508589
G SLBP2 uncharacterized LOC474694 JBrowse link 11 25,935,773 25,939,846 RGD:13508589
G ZNF473 zinc finger protein 473 JBrowse link 1 106,550,919 106,564,589 RGD:13508589
mRNA 3'-splice site recognition term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ISY1 ISY1 splicing factor homolog JBrowse link 20 2,945,636 2,972,245 RGD:13508589
G SLU7 SLU7 homolog, splicing factor JBrowse link 4 50,314,063 50,328,999 RGD:13508589
mRNA 5'-splice site recognition term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LOC100682636 U1 small nuclear ribonucleoprotein C pseudogene JBrowse link 33 10,139,384 10,139,966 RGD:13508589
G PRPF39 pre-mRNA processing factor 39 JBrowse link 8 22,510,816 22,549,481 RGD:13508589
G PSIP1 PC4 and SFRS1 interacting protein 1 JBrowse link 11 35,746,064 35,788,473 RGD:13508589
G SFSWAP splicing factor SWAP JBrowse link 26 1,035,059 1,104,730 RGD:13508589
G SNRPC small nuclear ribonucleoprotein polypeptide C JBrowse link 12 3,996,483 4,010,904 RGD:13508589
G SRSF1 serine and arginine rich splicing factor 1 JBrowse link 9 32,692,517 32,696,325 RGD:9068941
G SRSF12 serine and arginine rich splicing factor 12 JBrowse link 12 48,355,844 48,398,753 RGD:13508589
mRNA alternative polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CPSF6 cleavage and polyadenylation specific factor 6 JBrowse link 10 11,265,044 11,297,395 RGD:13508589
G CPSF7 cleavage and polyadenylation specific factor 7 JBrowse link 18 54,986,709 55,012,499 RGD:13508589
G NUDT21 nudix hydrolase 21 JBrowse link 2 59,736,739 59,751,967 RGD:9068941
G VIRMA vir like m6A methyltransferase associated JBrowse link 29 39,211,139 39,261,458 RGD:13508589
G YTHDC1 YTH domain containing 1 JBrowse link 13 58,818,424 58,858,241 RGD:13508589
mRNA cis splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CACTIN cactin, spliceosome C complex subunit JBrowse link 20 55,803,494 55,817,467 RGD:13508589
G CWC15 CWC15 spliceosome associated protein homolog JBrowse link 21 6,037,305 6,049,124 RGD:13508589
G DCPS decapping enzyme, scavenger JBrowse link 5 8,168,887 8,212,582 RGD:13508589
G NCBP1 nuclear cap binding protein subunit 1 JBrowse link 11 54,938,250 54,974,536 RGD:13508589
G NCBP2 nuclear cap binding protein subunit 2 JBrowse link 33 29,911,457 29,943,596 RGD:13508589
G PIGZ phosphatidylinositol glycan anchor biosynthesis class Z JBrowse link 33 29,945,980 29,965,906 RGD:13508589
G PRPF40A pre-mRNA processing factor 40 homolog A JBrowse link 19 53,649,424 53,710,095 RGD:13508589
G PRPF40B pre-mRNA processing factor 40 homolog B JBrowse link 27 5,017,861 5,038,033 RGD:13508589
G RBM14 RNA binding motif protein 14 JBrowse link 18 50,683,227 50,728,512 RGD:13508589
G RBM19 RNA binding motif protein 19 JBrowse link 26 11,042,737 11,169,786 RGD:13508589
G RBM22 RNA binding motif protein 22 JBrowse link 4 58,460,805 58,470,411 RGD:13508589
G RBM4B RNA binding motif protein 4B JBrowse link 18 50,676,138 50,686,061 RGD:13508589
G SART1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP JBrowse link 18 51,297,419 51,313,804 RGD:13508589
G SRSF1 serine and arginine rich splicing factor 1 JBrowse link 9 32,692,517 32,696,325 RGD:13508589
G SRSF12 serine and arginine rich splicing factor 12 JBrowse link 12 48,355,844 48,398,753 RGD:13508589
G SRSF2 serine and arginine rich splicing factor 2 JBrowse link 9 4,028,414 4,032,371 RGD:13508589
G SRSF3 serine and arginine rich splicing factor 3 JBrowse link 12 5,677,879 5,686,220 RGD:13508589
G SRSF4 serine and arginine rich splicing factor 4 JBrowse link 2 71,418,626 71,434,140 RGD:13508589
G SRSF5 serine and arginine rich splicing factor 5 JBrowse link 8 43,514,048 43,519,019 RGD:13508589
G SRSF6 serine and arginine rich splicing factor 6 JBrowse link 24 31,217,190 31,222,852 RGD:13508589
G SRSF7 serine and arginine rich splicing factor 7 JBrowse link 17 30,809,743 30,816,269 RGD:13508589
G SRSF9 serine and arginine rich splicing factor 9 JBrowse link 26 16,363,275 16,369,699 RGD:13508589
G WBP11 WW domain binding protein 11 JBrowse link 27 31,805,590 31,822,602 RGD:13508589
G WBP4 WW domain binding protein 4 JBrowse link 22 9,504,525 9,565,230 RGD:13508589
mRNA cleavage involved in mRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ERN1 endoplasmic reticulum to nucleus signaling 1 JBrowse link 9 11,930,614 12,006,724 RGD:13508589
mRNA polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AHCYL1 adenosylhomocysteinase like 1 JBrowse link 6 41,945,224 41,983,917 RGD:13508589
G APLP1 amyloid beta precursor like protein 1 JBrowse link 1 116,774,392 116,783,101 RGD:9068941
G APP amyloid beta precursor protein JBrowse link 31 21,351,207 21,614,466 RGD:13508589
G CDC73 cell division cycle 73 JBrowse link 38 5,826,209 5,937,930 RGD:9068941
G CLP1 cleavage factor polyribonucleotide kinase subunit 1 JBrowse link 18 38,528,700 38,531,899 RGD:13508589
G CPSF1 cleavage and polyadenylation specific factor 1 JBrowse link 13 37,817,440 37,827,868 RGD:13508589
G CPSF2 cleavage and polyadenylation specific factor 2 JBrowse link 8 1,364,399 1,398,496 RGD:13508589
G CPSF3 cleavage and polyadenylation specific factor 3 JBrowse link 17 6,537,404 6,576,121 RGD:13508589
G CSTF2 cleavage stimulation factor subunit 2 JBrowse link X 74,758,399 74,782,470 RGD:13508589
G FIP1L1 factor interacting with PAPOLA and CPSF1 JBrowse link 13 46,011,473 46,083,024 RGD:13508589
G LEO1 LEO1 homolog, Paf1/RNA polymerase II complex component JBrowse link 30 17,614,502 17,651,715 RGD:9068941
G MTPAP mitochondrial poly(A) polymerase JBrowse link 2 16,666,742 16,695,753 RGD:13508589
G PABPC1L poly(A) binding protein cytoplasmic 1 like JBrowse link 24 32,327,479 32,348,964 RGD:13508589
G PAF1 PAF1 homolog, Paf1/RNA polymerase II complex component JBrowse link 1 113,828,219 113,832,747 RGD:9068941
G PAPOLA poly(A) polymerase alpha JBrowse link 8 65,240,704 65,283,231 RGD:13508589
G PAPOLG poly(A) polymerase gamma JBrowse link 10 60,879,161 60,910,417 RGD:13508589
G PCF11 PCF11 cleavage and polyadenylation factor subunit JBrowse link 21 16,006,022 16,028,369 RGD:13508589
G SCAF8 SR-related CTD associated factor 8 JBrowse link 1 44,562,589 44,777,864 RGD:13508589
G SSU72 SSU72 homolog, RNA polymerase II CTD phosphatase JBrowse link 5 56,620,803 56,650,131 RGD:13508589
G SYMPK symplekin JBrowse link 1 109,757,951 109,795,672 RGD:13508589
G TENT2 terminal nucleotidyltransferase 2 JBrowse link 3 27,273,188 27,335,897 RGD:13508589
G TENT4B terminal nucleotidyltransferase 4B JBrowse link 2 65,068,088 65,147,853 RGD:13508589
G TUT1 terminal uridylyl transferase 1, U6 snRNA-specific JBrowse link 18 54,048,519 54,061,431 RGD:13508589
G TUT4 terminal uridylyl transferase 4 JBrowse link 15 8,832,208 8,958,136 RGD:13508589
G TUT7 terminal uridylyl transferase 7 JBrowse link 1 73,400,648 73,464,935 RGD:13508589
G WDR33 WD repeat domain 33 JBrowse link 19 22,788,462 22,904,610 RGD:13508589
mRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AICDA activation induced cytidine deaminase JBrowse link 27 37,064,107 37,073,791 RGD:13508589
G AKAP8L A-kinase anchoring protein 8 like JBrowse link 20 46,773,585 46,800,544 RGD:9068941
G ALKBH5 alkB homolog 5, RNA demethylase JBrowse link 5 41,339,292 41,365,641 RGD:13508589
G AURKAIP1 aurora kinase A interacting protein 1 JBrowse link 5 56,539,987 56,541,578 RGD:13508589
G CASC3 CASC3 exon junction complex subunit JBrowse link 9 22,403,139 22,427,475 RGD:13508589
G CPSF6 cleavage and polyadenylation specific factor 6 JBrowse link 10 11,265,044 11,297,395 RGD:9068941
G CSTF3 cleavage stimulation factor subunit 3 JBrowse link 18 34,493,922 34,563,899 RGD:13508589
G DBR1 debranching RNA lariats 1 JBrowse link 23 34,375,691 34,388,317 RGD:13508589
G ERN2 endoplasmic reticulum to nucleus signaling 2 JBrowse link 6 22,150,275 22,165,382 RGD:13508589
G GPATCH1 G-patch domain containing 1 JBrowse link 1 119,009,605 119,052,676 RGD:13508589
G H2AB1 H2A.B variant histone 1 JBrowse link X 122,910,412 122,913,373 RGD:9068941
G H2AB3 H2A.B variant histone 3 JBrowse link X 123,309,084 123,310,276 RGD:9068941
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 JBrowse link 14 39,498,805 39,509,034 RGD:13508589
G HNRNPL heterogeneous nuclear ribonucleoprotein L JBrowse link 1 114,267,195 114,279,107 RGD:13508589
G HNRNPLL heterogeneous nuclear ribonucleoprotein L like JBrowse link 17 30,644,695 30,684,485 RGD:13508589
G KHDRBS3 KH RNA binding domain containing, signal transduction associated 3 JBrowse link 13 31,397,501 31,583,198 RGD:9068941
G LGALS3 galectin 3 JBrowse link 8 30,977,438 30,994,711 RGD:13508589
G LOC100856585 protein SON JBrowse link 31 28,165,758 28,198,692 RGD:13508589
G LSM1 LSM1 homolog, mRNA degradation associated JBrowse link 16 27,304,257 27,315,389 RGD:13508589
G LSM5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 14 44,857,882 44,860,929 RGD:13508589
G METTL3 methyltransferase like 3 JBrowse link 15 18,528,755 18,546,303 RGD:9068941
G MTPAP mitochondrial poly(A) polymerase JBrowse link 2 16,666,742 16,695,753 RGD:13508589
G NUDT21 nudix hydrolase 21 JBrowse link 2 59,736,739 59,751,967 RGD:9068941
G PAN2 poly(A) specific ribonuclease subunit PAN2 JBrowse link 10 621,286 636,899 RGD:13508589
G PAN3 poly(A) specific ribonuclease subunit PAN3 JBrowse link 25 11,416,321 11,550,830 RGD:13508589
G PAPOLA poly(A) polymerase alpha JBrowse link 8 65,240,704 65,283,231 RGD:13508589
G PDCD11 programmed cell death 11 JBrowse link 28 15,767,936 15,812,285 RGD:13508589
G PHRF1 PHD and ring finger domains 1 JBrowse link 18 25,680,015 25,708,834 RGD:9068941
G PNN pinin, desmosome associated protein JBrowse link 8 17,354,004 17,361,462 RGD:13508589
G PRKACA protein kinase cAMP-activated catalytic subunit alpha JBrowse link 20 48,416,730 48,425,237 RGD:9068941
G PRMT9 protein arginine methyltransferase 9 JBrowse link 15 45,981,568 46,023,026 RGD:13508589
G PTBP1 polypyrimidine tract binding protein 1 JBrowse link 20 57,806,450 57,818,435 RGD:13508589
G PTBP2 polypyrimidine tract binding protein 2 JBrowse link 6 52,870,944 52,948,673 RGD:13508589
G PTBP3 polypyrimidine tract binding protein 3 JBrowse link 11 66,727,670 66,847,755 RGD:13508589
G QKI QKI, KH domain containing RNA binding JBrowse link 1 51,800,294 51,956,891 RGD:13508589
G RBBP6 RB binding protein 6, ubiquitin ligase JBrowse link 6 21,480,445 21,512,436 RGD:13508589
G RBFOX1 RNA binding fox-1 homolog 1 JBrowse link 6 34,218,276 36,255,529 RGD:13508589
G RBFOX2 RNA binding fox-1 homolog 2 JBrowse link 10 28,284,836 28,494,618 RGD:13508589
G RBFOX3 RNA binding fox-1 homolog 3 JBrowse link 9 2,362,354 2,374,492 RGD:13508589
G RBM23 RNA binding motif protein 23 JBrowse link 8 3,233,715 3,247,014 RGD:13508589
G RBM25 RNA binding motif protein 25 JBrowse link 8 46,442,233 46,486,801 RGD:13508589
G RBM26 RNA binding motif protein 26 JBrowse link 22 32,579,401 32,664,370 RGD:13508589
G RBM27 RNA binding motif protein 27 JBrowse link 2 40,634,447 40,709,741 RGD:13508589
G RBM39 RNA binding motif protein 39 JBrowse link 24 24,618,966 24,648,384 RGD:13508589
G RNASEL ribonuclease L JBrowse link 7 15,978,055 16,001,604 RGD:13508589
G SCAF1 SR-related CTD associated factor 1 JBrowse link 1 106,880,180 106,893,870 RGD:9068941
G SCAF4 SR-related CTD associated factor 4 JBrowse link 31 26,546,801 26,583,040 RGD:9068941
G SCAF8 SR-related CTD associated factor 8 JBrowse link 1 44,562,589 44,777,864 RGD:9068941
G SF3A1 splicing factor 3a subunit 1 JBrowse link 26 23,485,551 23,504,242 RGD:9068941
G SF3A2 splicing factor 3a subunit 2 JBrowse link 20 56,789,450 56,796,004 RGD:9068941
G SF3A3 splicing factor 3a subunit 3 JBrowse link 15 4,595,812 4,620,565 RGD:9068941
G SMN survival motor neuron JBrowse link 2 54,596,000 54,636,837 RGD:13508589
G SMNDC1 survival motor neuron domain containing 1 JBrowse link 28 21,660,501 21,672,279 RGD:13508589
G SON SON DNA and RNA binding protein JBrowse link 31 29,064,607 29,097,541 RGD:13508589
G SRRM1 serine and arginine repetitive matrix 1 JBrowse link 2 75,018,637 75,053,908 RGD:13508589
G SRRM4 serine/arginine repetitive matrix 4 JBrowse link 26 15,049,612 15,324,454 RGD:13508589
G SRRT serrate, RNA effector molecule JBrowse link 6 8,881,171 8,893,504 RGD:13508589
G SUPT4H1 SPT4 homolog, DSIF elongation factor subunit JBrowse link 9 32,990,060 32,996,023 RGD:13508589
G TCERG1 transcription elongation regulator 1 JBrowse link 2 40,855,973 40,920,242 RGD:9068941
G TENT2 terminal nucleotidyltransferase 2 JBrowse link 3 27,273,188 27,335,897 RGD:13508589
G THOC2 THO complex 2 JBrowse link X 95,087,209 95,217,450 RGD:13508589
G THOC7 THO complex 7 JBrowse link 20 27,367,628 27,390,868 RGD:13508589
G TUT1 terminal uridylyl transferase 1, U6 snRNA-specific JBrowse link 18 54,048,519 54,061,431 RGD:13508589
G TUT4 terminal uridylyl transferase 4 JBrowse link 15 8,832,208 8,958,136 RGD:13508589
G TUT7 terminal uridylyl transferase 7 JBrowse link 1 73,400,648 73,464,935 RGD:13508589
G XRN2 5'-3' exoribonuclease 2 JBrowse link 24 2,042,521 2,128,942 RGD:13508589
mRNA splice site selection term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CELF1 CUGBP Elav-like family member 1 JBrowse link 18 42,105,316 42,199,017 RGD:13508589
G CELF2 CUGBP Elav-like family member 2 JBrowse link 2 25,003,810 25,818,264 RGD:13508589
G CELF3 CUGBP Elav-like family member 3 JBrowse link 17 60,733,148 60,747,553 RGD:13508589
G CELF4 CUGBP Elav-like family member 4 JBrowse link 7 52,940,941 53,012,206 RGD:9068941
G CELF5 CUGBP Elav-like family member 5 JBrowse link 20 56,027,245 56,075,579 RGD:13508589
G KHDC4 KH domain containing 4, pre-mRNA splicing factor JBrowse link 7 41,875,837 41,893,819 RGD:13508589
G LUC7L LUC7 like JBrowse link 6 40,274,290 40,310,084 RGD:13508589
G LUC7L2 LUC7-like 2 (S. cerevisiae) JBrowse link 16 9,342,792 9,404,797 RGD:13508589
G LUC7L3 LUC7 like 3 pre-mRNA splicing factor JBrowse link 9 26,621,019 26,648,049 RGD:13508589
G MBNL1 muscleblind like splicing regulator 1 JBrowse link 23 46,697,755 46,941,300 RGD:9068941
G PTBP2 polypyrimidine tract binding protein 2 JBrowse link 6 52,870,944 52,948,673 RGD:13508589
G PUF60 poly(U) binding splicing factor 60 JBrowse link 13 37,375,781 37,387,969 RGD:13508589
G RBMX RNA binding motif protein X-linked JBrowse link X 107,173,599 107,182,404 RGD:9068941
G SETX senataxin JBrowse link 9 51,900,004 51,980,694 RGD:13508589
G SRSF10 serine and arginine rich splicing factor 10 JBrowse link 2 75,587,561 75,601,099 RGD:9068941
G SRSF6 serine and arginine rich splicing factor 6 JBrowse link 24 31,217,190 31,222,852 RGD:13508589
G YTHDC1 YTH domain containing 1 JBrowse link 13 58,818,424 58,858,241 RGD:9068941
mRNA splicing, via endonucleolytic cleavage and ligation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ERN1 endoplasmic reticulum to nucleus signaling 1 JBrowse link 9 11,930,614 12,006,724 RGD:13508589
mRNA splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AMDHD1 amidohydrolase domain containing 1 JBrowse link 15 35,741,190 35,761,848 RGD:13508589
G AQR aquarius intron-binding spliceosomal factor JBrowse link 30 2,571,359 2,670,715 RGD:13508589
G BCAS2 BCAS2 pre-mRNA processing factor JBrowse link 17 52,277,677 52,291,150 RGD:13508589
G BUD13 BUD13 homolog JBrowse link 5 16,789,297 16,862,933 RGD:13508589
G BUD31 BUD31 homolog JBrowse link 6 10,169,422 10,178,231 RGD:13508589
G CASC3 CASC3 exon junction complex subunit JBrowse link 9 22,403,139 22,427,475 RGD:13508589
G CDC40 cell division cycle 40 JBrowse link 12 66,897,953 66,950,131 RGD:13508589
G CDC5L cell division cycle 5 like JBrowse link 12 12,779,936 12,822,978 RGD:13508589
G CRNKL1 crooked neck pre-mRNA splicing factor 1 JBrowse link 24 3,294,607 3,310,846 RGD:13508589
G CWC15 CWC15 spliceosome associated protein homolog JBrowse link 21 6,037,305 6,049,124 RGD:9068941
G CWC22 CWC22 spliceosome associated protein homolog JBrowse link 36 23,355,501 23,415,059 RGD:13508589
G CWC25 CWC25 spliceosome associated protein homolog JBrowse link 9 23,426,005 23,443,512 RGD:13508589
G CWF19L1 CWF19 like 1, cell cycle control JBrowse link 28 13,003,948 13,033,369 RGD:13508589
G CWF19L2 CWF19 like cell cycle control factor 2 JBrowse link 5 24,936,700 25,080,927 RGD:13508589
G DBR1 debranching RNA lariats 1 JBrowse link 23 34,375,691 34,388,317 RGD:13508589
G DDX23 DEAD-box helicase 23 JBrowse link 27 5,690,452 5,704,762 RGD:13508589
G DDX39A DExD-box helicase 39A JBrowse link 20 48,196,350 48,204,667 RGD:13508589
G DDX39B DExD-box helicase 39B JBrowse link 12 1,032,377 1,044,465 RGD:13508589
G DDX41 DEAD-box helicase 41 JBrowse link 4 35,854,382 35,859,853 RGD:13508589
G DDX46 DEAD-box helicase 46 JBrowse link 11 22,834,843 22,906,976 RGD:13508589
G DHX16 DEAH-box helicase 16 JBrowse link 12 460,669 478,026 RGD:13508589
G DHX38 DEAH-box helicase 38 JBrowse link 5 77,810,853 77,830,020 RGD:13508589
G DHX8 DEAH-box helicase 8 JBrowse link 9 19,734,356 19,766,212 RGD:9068941
G EFTUD2 elongation factor Tu GTP binding domain containing 2 JBrowse link 9 18,585,918 18,631,743 RGD:13508589
G EIF4A3 eukaryotic translation initiation factor 4A3 JBrowse link 9 1,582,950 1,593,893 RGD:13508589
G GPKOW G-patch domain and KOW motifs JBrowse link X 42,248,121 42,266,747 RGD:13508589
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 JBrowse link 14 39,498,805 39,509,034 RGD:13508589
G HNRNPC heterogeneous nuclear ribonucleoprotein C JBrowse link 15 18,239,810 18,299,065 RGD:9068941
G HNRNPM heterogeneous nuclear ribonucleoprotein M JBrowse link 20 52,993,934 53,034,608 RGD:13508589
G HTATSF1 HIV-1 Tat specific factor 1 JBrowse link X 106,848,455 106,866,540 RGD:13508589
G IK IK cytokine JBrowse link 2 35,805,631 35,818,205 RGD:13508589
G ISY1 ISY1 splicing factor homolog JBrowse link 20 2,945,636 2,972,245 RGD:9068941
G KMT5A lysine methyltransferase 5A JBrowse link 26 6,120,500 6,190,178 RGD:13508589
G LOC100686524 U2 small nuclear ribonucleoprotein B''-like JBrowse link 34 35,173,550 35,174,340 RGD:13508589
G LOC100855556 U6 snRNA-associated Sm-like protein LSm8 pseudogene JBrowse link 3 3,633,656 3,634,121 RGD:13508589
G LOC102154080 U6 snRNA-associated Sm-like protein LSm3 pseudogene JBrowse link 15 14,519,325 14,519,728 RGD:13508589
G LSM2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 12 1,270,328 1,279,269 RGD:9068941
G LSM3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 20 4,328,930 4,342,731 RGD:13508589
G LSM4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 20 44,707,460 44,720,490 RGD:13508589
G LSM5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 14 44,857,882 44,860,929 RGD:9068941
G LSM6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 15 44,651,830 44,666,418 RGD:13508589
G LSM7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 20 56,730,476 56,735,115 RGD:13508589
G LSM8 LSM8 homolog, U6 small nuclear RNA associated JBrowse link 14 56,908,344 56,916,512 RGD:13508589
G LSM8 LSM8 homolog, U6 small nuclear RNA associated JBrowse link 18 55,715,008 55,715,562 RGD:13508589
G MAGOHB mago homolog B, exon junction complex subunit JBrowse link 27 35,125,786 35,133,372 RGD:9068941
G METTL14 methyltransferase like 14 JBrowse link 32 37,653,163 37,679,577 RGD:13508589
G METTL3 methyltransferase like 3 JBrowse link 15 18,528,755 18,546,303 RGD:13508589
RGD:9068941
G MFAP1 microfibril associated protein 1 JBrowse link 30 10,545,987 10,559,507 RGD:13508589
G NCBP1 nuclear cap binding protein subunit 1 JBrowse link 11 54,938,250 54,974,536 RGD:13508589
G NCBP2 nuclear cap binding protein subunit 2 JBrowse link 33 29,911,457 29,943,596 RGD:13508589
G NONO non-POU domain containing octamer binding JBrowse link X 55,618,032 55,632,237 RGD:13508589
G NOVA1 NOVA alternative splicing regulator 1 JBrowse link 8 6,133,608 6,281,508 RGD:13508589
G NOVA2 NOVA alternative splicing regulator 2 JBrowse link 1 109,657,693 109,683,277 RGD:13508589
G PHF5A PHD finger protein 5A JBrowse link 10 23,798,854 23,809,024 RGD:13508589
G PLRG1 pleiotropic regulator 1 JBrowse link 15 52,196,998 52,213,378 RGD:13508589
G PPIE peptidylprolyl isomerase E JBrowse link 15 3,156,067 3,173,028 RGD:13508589
G PPIL1 peptidylprolyl isomerase like 1 JBrowse link 12 5,916,524 5,936,276 RGD:13508589
G PRPF19 pre-mRNA processing factor 19 JBrowse link 18 55,389,902 55,400,241 RGD:13508589
G PRPF3 pre-mRNA processing factor 3 JBrowse link 17 59,552,227 59,577,027 RGD:13508589
G PRPF31 pre-mRNA processing factor 31 JBrowse link 1 103,073,359 103,090,652 RGD:13508589
G PRPF38A pre-mRNA processing factor 38A JBrowse link 15 8,950,621 8,965,205 RGD:13508589
G PRPF38B pre-mRNA processing factor 38B JBrowse link 6 43,044,322 43,052,622 RGD:13508589
G PRPF4 pre-mRNA processing factor 4 JBrowse link 11 67,641,332 67,659,070 RGD:13508589
G PRPF40A pre-mRNA processing factor 40 homolog A JBrowse link 19 53,649,424 53,710,095 RGD:13508589
G PRPF40B pre-mRNA processing factor 40 homolog B JBrowse link 27 5,017,861 5,038,033 RGD:13508589
G PRPF6 pre-mRNA processing factor 6 JBrowse link 24 47,439,210 47,483,531 RGD:13508589
G PRPF8 pre-mRNA processing factor 8 JBrowse link 9 45,797,882 45,827,365 RGD:9068941
G RAVER1 ribonucleoprotein, PTB binding 1 JBrowse link 20 50,784,068 50,798,303 RGD:13508589
G RAVER2 ribonucleoprotein, PTB binding 2 JBrowse link 5 45,408,569 45,536,316 RGD:13508589
G RBM10 RNA binding motif protein 10 JBrowse link X 40,746,959 40,776,764 RGD:13508589
G RBM15B RNA binding motif protein 15B JBrowse link 20 38,191,079 38,194,150 RGD:13508589
G RBM41 RNA binding motif protein 41 JBrowse link X 80,648,486 80,704,403 RGD:13508589
G RBM5 RNA binding motif protein 5 JBrowse link 20 39,198,706 39,227,856 RGD:13508589
G RBM6 RNA binding motif protein 6 JBrowse link 20 39,235,301 39,359,784 RGD:13508589
G RBM8A RNA binding motif protein 8A JBrowse link 17 58,722,449 58,726,017 RGD:13508589
G RBMX2 RNA binding motif protein X-linked 2 JBrowse link X 101,533,732 101,547,147 RGD:13508589
G RNF113A ring finger protein 113A JBrowse link X 91,884,757 91,885,998 RGD:9068941
G RNPC3 RNA binding region (RNP1, RRM) containing 3 JBrowse link 6 46,960,033 47,044,272 RGD:13508589
G RNPS1 RNA binding protein with serine rich domain 1 JBrowse link 6 38,719,713 38,729,437 RGD:13508589
G RSRC1 arginine and serine rich coiled-coil 1 JBrowse link 23 51,492,912 51,890,603 RGD:9068941
G SART1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP JBrowse link 18 51,297,419 51,313,804 RGD:13508589
G SART3 spliceosome associated factor 3, U4/U6 recycling protein JBrowse link 26 18,308,065 18,345,903 RGD:13508589
G SF1 splicing factor 1 JBrowse link 18 52,380,058 52,393,833 RGD:13508589
G SF3A1 splicing factor 3a subunit 1 JBrowse link 26 23,485,551 23,504,242 RGD:9068941
G SF3A2 splicing factor 3a subunit 2 JBrowse link 20 56,789,450 56,796,004 RGD:9068941
G SF3A3 splicing factor 3a subunit 3 JBrowse link 15 4,595,812 4,620,565 RGD:13508589
G SF3B1 splicing factor 3b subunit 1 JBrowse link 37 6,922,150 6,962,474 RGD:9068941
G SF3B2 splicing factor 3b subunit 2 JBrowse link 18 51,197,924 51,212,397 RGD:13508589
G SF3B3 splicing factor 3b subunit 3 JBrowse link 5 76,490,622 76,543,877 RGD:13508589
G SF3B4 splicing factor 3b subunit 4 JBrowse link 17 59,208,989 59,214,643 RGD:13508589
G SF3B5 splicing factor 3b subunit 5 JBrowse link 1 35,558,249 35,558,998 RGD:13508589
G SF3B6 splicing factor 3b subunit 6 JBrowse link 17 18,548,633 18,559,694 RGD:13508589
G SFPQ splicing factor proline and glutamine rich JBrowse link 15 6,879,955 6,896,309 RGD:13508589
G SMU1 SMU1 DNA replication regulator and spliceosomal factor JBrowse link 11 50,172,679 50,195,719 RGD:13508589
G SNIP1 Smad nuclear interacting protein 1 JBrowse link 15 4,924,035 4,934,565 RGD:13508589
G SNRNP200 small nuclear ribonucleoprotein U5 subunit 200 JBrowse link 17 34,472,638 34,505,332 RGD:9068941
G SNRNP25 small nuclear ribonucleoprotein U11/U12 subunit 25 JBrowse link 6 40,414,073 40,416,985 RGD:13508589
G SNRNP70 small nuclear ribonucleoprotein U1 subunit 70 JBrowse link 1 107,340,484 107,356,280 RGD:13508589
G SNRPA small nuclear ribonucleoprotein polypeptide A JBrowse link 1 113,018,268 113,030,827 RGD:13508589
G SNRPA1 small nuclear ribonucleoprotein polypeptide A' JBrowse link 3 39,777,947 39,791,256 RGD:13508589
G SNRPB small nuclear ribonucleoprotein polypeptides B and B1 JBrowse link 24 18,673,975 18,683,315 RGD:13508589
G SNRPB2 small nuclear ribonucleoprotein polypeptide B2 JBrowse link 24 6,106,217 6,117,369 RGD:13508589
G SNRPC small nuclear ribonucleoprotein polypeptide C JBrowse link 12 3,996,483 4,010,904 RGD:9068941
G SNRPD1 small nuclear ribonucleoprotein D1 polypeptide JBrowse link 7 66,407,313 66,421,193 RGD:9068941
G SNRPD2 small nuclear ribonucleoprotein D2 polypeptide JBrowse link 1 109,891,253 109,896,712 RGD:9068941
G SNRPD3 small nuclear ribonucleoprotein D3 polypeptide JBrowse link 26 28,247,878 28,263,519 RGD:9068941
G SNRPE small nuclear ribonucleoprotein polypeptide E JBrowse link 38 515,808 521,536 RGD:9068941
G SNRPF small nuclear ribonucleoprotein polypeptide F JBrowse link 15 35,691,071 35,698,734 RGD:9068941
G SNRPG small nuclear ribonucleoprotein polypeptide G JBrowse link 10 68,826,250 68,836,755 RGD:13508589
G SNRPN small nuclear ribonucleoprotein polypeptide N JBrowse link 3 35,837,582 35,842,925 RGD:13508589
G SNU13 small nuclear ribonucleoprotein 13 JBrowse link 10 23,622,897 23,631,526 RGD:13508589
G SNW1 SNW domain containing 1 JBrowse link 8 50,478,924 50,512,360 RGD:13508589
G SRRM2 serine/arginine repetitive matrix 2 JBrowse link 6 38,291,847 38,310,624 RGD:9068941
G SRSF10 serine and arginine rich splicing factor 10 JBrowse link 2 75,587,561 75,601,099 RGD:9068941
G STXBP3 syntaxin binding protein 3 JBrowse link 6 42,947,639 42,998,297 RGD:13508589
G SYF2 SYF2 pre-mRNA splicing factor JBrowse link 2 74,573,023 74,580,061 RGD:9068941
G TRA2A transformer 2 alpha homolog JBrowse link 14 37,159,890 37,183,457 RGD:13508589
G TRA2B transformer 2 beta homolog JBrowse link 34 18,637,725 18,656,869 RGD:9068941
G TXNL4A thioredoxin like 4A JBrowse link 1 722,223 735,253 RGD:13508589
G TXNL4B thioredoxin like 4B JBrowse link 5 77,765,461 77,810,729 RGD:13508589
G U2AF1 U2 small nuclear RNA auxiliary factor 1 JBrowse link 31 37,263,265 37,276,710 RGD:13508589
G U2AF1L4 U2 small nuclear RNA auxiliary factor 1 like 4 JBrowse link 1 116,888,680 116,890,911 RGD:13508589
G U2AF2 U2 small nuclear RNA auxiliary factor 2 JBrowse link 1 102,074,759 102,091,326 RGD:13508589
G UBL5 ubiquitin like 5 JBrowse link 20 51,174,741 51,176,401 RGD:13508589
G USP39 ubiquitin specific peptidase 39 JBrowse link 17 39,437,908 39,470,579 RGD:9068941
G USP49 ubiquitin specific peptidase 49 JBrowse link 12 10,474,873 10,556,900 RGD:13508589
G WBP4 WW domain binding protein 4 JBrowse link 22 9,504,525 9,565,230 RGD:9068941
G WDR83 WD repeat domain 83 JBrowse link 20 49,439,387 49,443,661 RGD:13508589
G XAB2 XPA binding protein 2 JBrowse link 20 52,392,521 52,406,071 RGD:13508589
G YTHDC1 YTH domain containing 1 JBrowse link 13 58,818,424 58,858,241 RGD:13508589
G ZCRB1 zinc finger CCHC-type and RNA binding motif containing 1 JBrowse link 27 11,590,152 11,605,079 RGD:13508589
G ZMAT2 zinc finger matrin-type 2 JBrowse link 2 35,851,972 35,860,818 RGD:13508589
G ZRSR2 zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2 JBrowse link X 12,046,163 12,073,617 RGD:13508589
ncRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ZCCHC8 zinc finger CCHC-type containing 8 JBrowse link 26 6,895,873 6,927,262 RGD:9068941
negative regulation of mRNA polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CCNT1 cyclin T1 JBrowse link 27 5,788,426 5,817,518 RGD:13508589
G CDK9 cyclin dependent kinase 9 JBrowse link 9 55,615,271 55,619,493 RGD:13508589
G CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component JBrowse link 21 33,915,804 33,949,597 RGD:13508589
G NELFE negative elongation factor complex member E JBrowse link 12 1,406,411 1,412,387 RGD:13508589
G RNF20 ring finger protein 20 JBrowse link 11 58,239,245 58,266,637 RGD:13508589
G RNF40 ring finger protein 40 JBrowse link 6 17,402,022 17,414,494 RGD:13508589
G SUPT5H SPT5 homolog, DSIF elongation factor subunit JBrowse link 1 113,759,419 113,788,490 RGD:13508589
G ZC3H14 zinc finger CCCH-type containing 14 JBrowse link 8 59,796,607 59,849,928 RGD:13508589
negative regulation of mRNA splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACIN1 apoptotic chromatin condensation inducer 1 JBrowse link 8 3,370,469 3,405,710 RGD:9068941
G C1QBP complement C1q binding protein JBrowse link 5 31,354,665 31,359,672 RGD:13508589
G CELF4 CUGBP Elav-like family member 4 JBrowse link 7 52,940,941 53,012,206 RGD:9068941
G DYRK1A dual specificity tyrosine phosphorylation regulated kinase 1A JBrowse link 31 32,564,970 32,655,232 RGD:13508589
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 JBrowse link 14 39,498,805 39,509,034 RGD:13508589
G HNRNPK heterogeneous nuclear ribonucleoprotein K JBrowse link 1 75,499,334 75,511,525 RGD:13508589
G HNRNPL heterogeneous nuclear ribonucleoprotein L JBrowse link 1 114,267,195 114,279,107 RGD:9068941
G NPM1 nucleophosmin 1 JBrowse link 4 40,756,464 40,770,174 RGD:9068941
G PCBP4 poly(rC) binding protein 4 JBrowse link 20 37,748,854 37,759,072 RGD:13508589
G PTBP1 polypyrimidine tract binding protein 1 JBrowse link 20 57,806,450 57,818,435 RGD:13508589
G PTBP3 polypyrimidine tract binding protein 3 JBrowse link 11 66,727,670 66,847,755 RGD:13508589
G RBM10 RNA binding motif protein 10 JBrowse link X 40,746,959 40,776,764 RGD:13508589
G RBM42 RNA binding motif protein 42 JBrowse link 1 116,978,132 116,985,845 RGD:9068941
G RNPS1 RNA binding protein with serine rich domain 1 JBrowse link 6 38,719,713 38,729,437 RGD:13508589
G SAP18 Sin3A associated protein 18 JBrowse link 25 17,006,025 17,014,948 RGD:9068941
G SFSWAP splicing factor SWAP JBrowse link 26 1,035,059 1,104,730 RGD:9068941
G SRSF10 serine and arginine rich splicing factor 10 JBrowse link 2 75,587,561 75,601,099 RGD:9068941
G SRSF4 serine and arginine rich splicing factor 4 JBrowse link 2 71,418,626 71,434,140 RGD:13508589
G SRSF6 serine and arginine rich splicing factor 6 JBrowse link 24 31,217,190 31,222,852 RGD:13508589
G SRSF7 serine and arginine rich splicing factor 7 JBrowse link 17 30,809,743 30,816,269 RGD:13508589
G SRSF9 serine and arginine rich splicing factor 9 JBrowse link 26 16,363,275 16,369,699 RGD:13508589
G TRA2B transformer 2 beta homolog JBrowse link 34 18,637,725 18,656,869 RGD:9068941
G U2AF2 U2 small nuclear RNA auxiliary factor 2 JBrowse link 1 102,074,759 102,091,326 RGD:13508589
negative regulation of pre-miRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BCDIN3D BCDIN3 domain containing RNA methyltransferase JBrowse link 27 4,851,156 4,860,322 RGD:13508589
G LIN28B lin-28 homolog B JBrowse link 12 62,403,831 62,529,435 RGD:9068941
negative regulation of primary miRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G IL6 interleukin 6 JBrowse link 14 36,474,268 36,478,519 RGD:9068941
G LIN28B lin-28 homolog B JBrowse link 12 62,403,831 62,529,435 RGD:9068941
G MECP2 methyl-CpG binding protein 2 JBrowse link X 121,866,721 121,876,088 RGD:9068941
G STAT3 signal transducer and activator of transcription 3 JBrowse link 9 20,539,660 20,614,631 RGD:9068941
negative regulation of production of miRNAs involved in gene silencing by miRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G B9D2 B9 domain containing 2 JBrowse link 1 112,621,832 112,627,726 RGD:9068941
G ESR1 estrogen receptor 1 JBrowse link 1 42,081,952 42,368,544 RGD:13508589
G NCOR1 nuclear receptor corepressor 1 JBrowse link 5 39,687,530 39,837,003 RGD:9068941
G NCOR2 nuclear receptor corepressor 2 JBrowse link 26 5,352,670 5,493,741 RGD:13508589
G PPP3CA protein phosphatase 3 catalytic subunit alpha JBrowse link 32 22,688,141 22,996,693 RGD:13508589
G TNF tumor necrosis factor JBrowse link 12 1,074,561 1,076,425 RGD:13508589
G TP53 tumor protein p53 JBrowse link 5 32,561,406 32,565,149 RGD:13508589
G ZC3H10 zinc finger CCCH-type containing 10 JBrowse link 10 439,163 445,587 RGD:9068941
G ZC3H12A zinc finger CCCH-type containing 12A JBrowse link 15 4,972,369 4,984,218 RGD:13508589
G ZMPSTE24 zinc metallopeptidase STE24 JBrowse link 15 2,669,546 2,708,480 RGD:13508589
negative regulation of production of siRNA involved in RNA interference term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TERT telomerase reverse transcriptase JBrowse link 34 11,288,622 11,307,790 RGD:9068941
negative regulation of RNA splicing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AKT2 AKT serine/threonine kinase 2 JBrowse link 1 113,359,038 113,407,119 RGD:9068941
G PTBP1 polypyrimidine tract binding protein 1 JBrowse link 20 57,806,450 57,818,435 RGD:9068941
G PTBP2 polypyrimidine tract binding protein 2 JBrowse link 6 52,870,944 52,948,673 RGD:13508589
G PTBP3 polypyrimidine tract binding protein 3 JBrowse link 11 66,727,670 66,847,755 RGD:9068941
G RPS13 ribosomal protein S13 JBrowse link 21 39,685,453 39,688,915 RGD:9068941
G RPS26 ribosomal protein S26 JBrowse link 10 362,699 364,406 RGD:9068941
G TMBIM6 transmembrane BAX inhibitor motif containing 6 JBrowse link 27 4,921,606 4,944,830 RGD:13508589
negative regulation of rRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G KAT2B lysine acetyltransferase 2B JBrowse link 23 23,166,722 23,242,447 RGD:13508589
G SHQ1 SHQ1, H/ACA ribonucleoprotein assembly factor JBrowse link 20 19,304,839 19,406,662 RGD:13508589
polyadenylation-dependent snoRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G EXOSC10 exosome component 10 JBrowse link 2 84,942,801 84,964,129 RGD:13508589
G EXOSC2 exosome component 2 JBrowse link 9 53,266,396 53,276,236 RGD:13508589
G EXOSC3 exosome component 3 JBrowse link 11 54,072,993 54,079,024 RGD:13508589
G EXOSC4 exosome component 4 JBrowse link 13 37,574,359 37,576,331 RGD:13508589
G EXOSC5 exosome component 5 JBrowse link 1 112,599,519 112,609,039 RGD:13508589
G PARN poly(A)-specific ribonuclease JBrowse link 6 28,629,137 28,783,671 RGD:9068941
positive regulation of mRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CCNB1 cyclin B1 JBrowse link 2 54,256,957 54,264,749 RGD:9068941
G CDC73 cell division cycle 73 JBrowse link 38 5,826,209 5,937,930 RGD:9068941
G DHX36 DEAH-box helicase 36 JBrowse link 23 48,404,351 48,456,360 RGD:13508589
G LEO1 LEO1 homolog, Paf1/RNA polymerase II complex component JBrowse link 30 17,614,502 17,651,715 RGD:9068941
G NCBP1 nuclear cap binding protein subunit 1 JBrowse link 11 54,938,250 54,974,536 RGD:13508589
G NCBP2 nuclear cap binding protein subunit 2 JBrowse link 33 29,911,457 29,943,596 RGD:13508589
G PAF1 PAF1 homolog, Paf1/RNA polymerase II complex component JBrowse link 1 113,828,219 113,832,747 RGD:9068941
positive regulation of mRNA polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CPEB1 cytoplasmic polyadenylation element binding protein 1 JBrowse link 3 54,405,140 54,499,614 RGD:9068941
G CPEB3 cytoplasmic polyadenylation element binding protein 3 JBrowse link 28 6,523,894 6,724,010 RGD:9068941
G HSF1 heat shock transcription factor 1 JBrowse link 13 37,724,741 37,745,259 RGD:13508589
G NUDT21 nudix hydrolase 21 JBrowse link 2 59,736,739 59,751,967 RGD:9068941
positive regulation of mRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ADARB1 adenosine deaminase RNA specific B1 JBrowse link 31 38,715,529 38,799,353 RGD:9068941
positive regulation of mRNA splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CELF3 CUGBP Elav-like family member 3 JBrowse link 17 60,733,148 60,747,553 RGD:13508589
G CELF4 CUGBP Elav-like family member 4 JBrowse link 7 52,940,941 53,012,206 RGD:9068941
G CIRBP cold inducible RNA binding protein JBrowse link 20 57,521,609 57,526,526 RGD:13508589
G DAZAP1 DAZ associated protein 1 JBrowse link 20 57,411,249 57,435,852 RGD:13508589
G EIF4A3 eukaryotic translation initiation factor 4A3 JBrowse link 9 1,582,950 1,593,893 RGD:9068941
G HMX2 H6 family homeobox 2 JBrowse link 28 32,679,585 32,687,972 RGD:13508589
G HSPA8 heat shock protein family A (Hsp70) member 8 JBrowse link 5 11,292,219 11,296,851 RGD:9068941
G LMNTD2 lamin tail domain containing 2 JBrowse link 18 25,663,814 25,669,420 RGD:9068941
G NCBP1 nuclear cap binding protein subunit 1 JBrowse link 11 54,938,250 54,974,536 RGD:13508589
G NCL nucleolin JBrowse link 25 43,330,524 43,384,909 RGD:13508589
G NUP98 nucleoporin 98 and 96 precursor JBrowse link 21 26,231,585 26,348,019 RGD:13508589
G OBI1 ORC ubiquitin ligase 1 JBrowse link 22 32,006,441 32,047,609 RGD:9068941
G PRDX6 peroxiredoxin 6 JBrowse link 7 25,663,238 25,675,855 RGD:9068941
G PRPF19 pre-mRNA processing factor 19 JBrowse link 18 55,389,902 55,400,241 RGD:9068941
G RBM3 RNA binding motif protein 3 JBrowse link X 41,806,072 41,809,803 RGD:13508589
G RBMX RNA binding motif protein X-linked JBrowse link X 107,173,599 107,182,404 RGD:13508589
G SF3B4 splicing factor 3b subunit 4 JBrowse link 17 59,208,989 59,214,643 RGD:13508589
G SLC39A5 solute carrier family 39 member 5 JBrowse link 10 552,755 557,319 RGD:9068941
G SNRNP70 small nuclear ribonucleoprotein U1 subunit 70 JBrowse link 1 107,340,484 107,356,280 RGD:13508589
G SNW1 SNW domain containing 1 JBrowse link 8 50,478,924 50,512,360 RGD:9068941
G THRAP3 thyroid hormone receptor associated protein 3 JBrowse link 15 5,955,469 6,022,442 RGD:13508589
G TRA2A transformer 2 alpha homolog JBrowse link 14 37,159,890 37,183,457 RGD:13508589
G TRA2B transformer 2 beta homolog JBrowse link 34 18,637,725 18,656,869 RGD:13508589
G ZFP64 ZFP64 zinc finger protein JBrowse link 24 38,201,824 38,289,395 RGD:9068941
positive regulation of production of miRNAs involved in gene silencing by miRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G B9D2 B9 domain containing 2 JBrowse link 1 112,621,832 112,627,726 RGD:9068941
G BMP4 bone morphogenetic protein 4 JBrowse link 8 29,997,563 30,254,307 RGD:13508589
G DDX5 DEAD-box helicase 5 JBrowse link 9 12,300,706 12,307,931 RGD:13508589
G EGFR epidermal growth factor receptor JBrowse link 18 5,983,669 6,044,092 RGD:13508589
G IL6 interleukin 6 JBrowse link 14 36,474,268 36,478,519 RGD:9068941
G LIN28A lin-28 homolog A JBrowse link 2 73,613,069 73,628,211 RGD:13508589
G MAP2K1 mitogen-activated protein kinase kinase 1 JBrowse link 30 30,683,192 30,760,479 RGD:9068941
G MAP2K2 mitogen-activated protein kinase kinase 2 JBrowse link 20 55,465,460 55,487,629 RGD:9068941
G MYOCD myocardin JBrowse link 5 36,674,476 36,774,435 RGD:9068941
G NR2F1 nuclear receptor subfamily 2 group F member 1 JBrowse link 3 15,707,198 15,716,875 RGD:9068941
G RIPK1 receptor interacting serine/threonine kinase 1 JBrowse link 35 3,367,796 3,407,631 RGD:13508589
G TP53 tumor protein p53 JBrowse link 5 32,561,406 32,565,149 RGD:13508589
positive regulation of RNA splicing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DYRK1A dual specificity tyrosine phosphorylation regulated kinase 1A JBrowse link 31 32,564,970 32,655,232 RGD:13508589
G ERN1 endoplasmic reticulum to nucleus signaling 1 JBrowse link 9 11,930,614 12,006,724 RGD:13508589
G HABP4 hyaluronan binding protein 4 JBrowse link 1 70,339,386 70,381,694 RGD:13508589
G HNRNPK heterogeneous nuclear ribonucleoprotein K JBrowse link 1 75,499,334 75,511,525 RGD:9068941
G HNRNPLL heterogeneous nuclear ribonucleoprotein L like JBrowse link 17 30,644,695 30,684,485 RGD:13508589
G HSP70 heat shock protein 70 JBrowse link 12 1,285,282 1,287,670 RGD:9068941
G KHDRBS3 KH RNA binding domain containing, signal transduction associated 3 JBrowse link 13 31,397,501 31,583,198 RGD:9068941
G PIK3R1 phosphoinositide-3-kinase regulatory subunit 1 JBrowse link 2 53,447,802 53,527,563 RGD:13508589
G POLR2A RNA polymerase II subunit A JBrowse link 5 32,403,814 32,429,717 RGD:9068941
G RBM20 RNA binding motif protein 20 JBrowse link 28 21,971,424 22,162,798 RGD:13508589
G RBM22 RNA binding motif protein 22 JBrowse link 4 58,460,805 58,470,411 RGD:13508589
G SETX senataxin JBrowse link 9 51,900,004 51,980,694 RGD:13508589
G SLC38A2 solute carrier family 38 member 2 JBrowse link 27 8,056,289 8,068,988 RGD:13508589
G SMN survival motor neuron JBrowse link 2 54,596,000 54,636,837 RGD:9068941
G SRSF1 serine and arginine rich splicing factor 1 JBrowse link 9 32,692,517 32,696,325 RGD:9068941
G SRSF5 serine and arginine rich splicing factor 5 JBrowse link 8 43,514,048 43,519,019 RGD:9068941
G U2AF2 U2 small nuclear RNA auxiliary factor 2 JBrowse link 1 102,074,759 102,091,326 RGD:13508589
G ZPR1 ZPR1 zinc finger JBrowse link 5 16,778,803 16,787,493 RGD:13508589
positive regulation of rRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BUD23 BUD23 rRNA methyltransferase and ribosome maturation factor JBrowse link 6 6,583,612 6,596,538 RGD:13508589
G DIMT1 DIMT1 rRNA methyltransferase and ribosome maturation factor JBrowse link 2 48,716,849 48,728,707 RGD:9068941
G HEATR1 HEAT repeat containing 1 JBrowse link 4 3,501,191 3,547,212 RGD:13508589
G RIOK1 RIO kinase 1 JBrowse link 35 7,355,484 7,383,537 RGD:13508589
G RIOK2 RIO kinase 2 JBrowse link 3 12,548,830 12,571,312 RGD:13508589
G SIRT7 sirtuin 7 JBrowse link 9 377,141 383,355 RGD:13508589
G TRMT112 tRNA methyltransferase subunit 11-2 JBrowse link 18 52,754,379 52,755,596 RGD:13508589
G UTP15 UTP15 small subunit processome component JBrowse link 2 56,378,116 56,395,009 RGD:13508589
G WDR43 WD repeat domain 43 JBrowse link 17 22,769,281 22,813,559 RGD:13508589
G WDR75 WD repeat domain 75 JBrowse link 37 157,400 191,127 RGD:13508589
pre-miRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ADAR adenosine deaminase RNA specific JBrowse link 7 42,762,021 42,785,192 RGD:13508589
G AGO1 argonaute RISC component 1 JBrowse link 15 6,258,359 6,294,911 RGD:13508589
G AGO2 argonaute RISC catalytic component 2 JBrowse link 13 35,169,243 35,230,252 RGD:13508589
G AGO3 argonaute RISC catalytic component 3 JBrowse link 15 6,133,303 6,253,032 RGD:13508589
G AGO4 argonaute RISC component 4 JBrowse link 15 6,325,899 6,351,748 RGD:13508589
G DICER1 dicer 1, ribonuclease III JBrowse link 8 63,970,245 64,029,438 RGD:13508589
G DROSHA drosha ribonuclease III RGD:13508589
G LIN28A lin-28 homolog A JBrowse link 2 73,613,069 73,628,211 RGD:13508589
G LIN28B lin-28 homolog B JBrowse link 12 62,403,831 62,529,435 RGD:9068941
G MRPL44 mitochondrial ribosomal protein L44 JBrowse link 37 29,681,751 29,689,489 RGD:13508589
G PRKRA protein activator of interferon induced protein kinase EIF2AK2 JBrowse link 36 22,061,226 22,080,324 RGD:9068941
G TARBP2 TARBP2 subunit of RISC loading complex JBrowse link 27 1,715,157 1,720,050 RGD:13508589
G TUT4 terminal uridylyl transferase 4 JBrowse link 15 8,832,208 8,958,136 RGD:13508589
G TUT7 terminal uridylyl transferase 7 JBrowse link 1 73,400,648 73,464,935 RGD:13508589
pre-mRNA cleavage required for polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CPSF2 cleavage and polyadenylation specific factor 2 JBrowse link 8 1,364,399 1,398,496 RGD:13508589
G CPSF4 cleavage and polyadenylation specific factor 4 JBrowse link 6 10,131,129 10,151,562 RGD:13508589
G CPSF6 cleavage and polyadenylation specific factor 6 JBrowse link 10 11,265,044 11,297,395 RGD:13508589
G CPSF7 cleavage and polyadenylation specific factor 7 JBrowse link 18 54,986,709 55,012,499 RGD:13508589
G CSTF2 cleavage stimulation factor subunit 2 JBrowse link X 74,758,399 74,782,470 RGD:13508589
G CSTF2T cleavage stimulation factor subunit 2 tau variant RGD:13508589
G FIP1L1 factor interacting with PAPOLA and CPSF1 JBrowse link 13 46,011,473 46,083,024 RGD:13508589
G NCBP1 nuclear cap binding protein subunit 1 JBrowse link 11 54,938,250 54,974,536 RGD:13508589
G NCBP2 nuclear cap binding protein subunit 2 JBrowse link 33 29,911,457 29,943,596 RGD:13508589
G NUDT21 nudix hydrolase 21 JBrowse link 2 59,736,739 59,751,967 RGD:9068941
G TUT1 terminal uridylyl transferase 1, U6 snRNA-specific JBrowse link 18 54,048,519 54,061,431 RGD:9068941
primary miRNA methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G METTL3 methyltransferase like 3 JBrowse link 15 18,528,755 18,546,303 RGD:13508589
primary miRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DGCR8 DGCR8 microprocessor complex subunit RGD:13508589
G DROSHA drosha ribonuclease III RGD:13508589
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 JBrowse link 14 39,498,805 39,509,034 RGD:13508589
G METTL3 methyltransferase like 3 JBrowse link 15 18,528,755 18,546,303 RGD:9068941
G MRPL44 mitochondrial ribosomal protein L44 JBrowse link 37 29,681,751 29,689,489 RGD:13508589
G PUS10 pseudouridine synthase 10 JBrowse link 10 61,033,986 61,105,154 RGD:13508589
G SRRT serrate, RNA effector molecule JBrowse link 6 8,881,171 8,893,504 RGD:13508589
production of miRNAs involved in gene silencing by miRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ADAR adenosine deaminase RNA specific JBrowse link 7 42,762,021 42,785,192 RGD:9068941
G AGO1 argonaute RISC component 1 JBrowse link 15 6,258,359 6,294,911 RGD:9068941
G AGO2 argonaute RISC catalytic component 2 JBrowse link 13 35,169,243 35,230,252 RGD:9068941
G AGO3 argonaute RISC catalytic component 3 JBrowse link 15 6,133,303 6,253,032 RGD:9068941
G AGO4 argonaute RISC component 4 JBrowse link 15 6,325,899 6,351,748 RGD:9068941
G DICER1 dicer 1, ribonuclease III JBrowse link 8 63,970,245 64,029,438 RGD:9068941
G PRKRA protein activator of interferon induced protein kinase EIF2AK2 JBrowse link 36 22,061,226 22,080,324 RGD:9068941
G PUM1 pumilio RNA binding family member 1 JBrowse link 2 69,907,655 70,044,055 RGD:13508589
G PUM2 pumilio RNA binding family member 2 JBrowse link 17 15,258,264 15,354,001 RGD:13508589
G RBM3 RNA binding motif protein 3 JBrowse link X 41,806,072 41,809,803 RGD:9068941
G SNIP1 Smad nuclear interacting protein 1 JBrowse link 15 4,924,035 4,934,565 RGD:13508589
G SPOUT1 SPOUT domain containing methyltransferase 1 JBrowse link 9 54,802,145 54,811,709 RGD:13508589
G TARBP2 TARBP2 subunit of RISC loading complex JBrowse link 27 1,715,157 1,720,050 RGD:9068941
G TRIM71 tripartite motif containing 71 JBrowse link 23 3,888,287 3,959,910 RGD:13508589
G ZC3H7A zinc finger CCCH-type containing 7A JBrowse link 6 31,042,964 31,069,507 RGD:13508589
G ZC3H7B zinc finger CCCH-type containing 7B JBrowse link 10 23,882,379 23,944,850 RGD:13508589
production of siRNA involved in RNA interference term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DICER1 dicer 1, ribonuclease III JBrowse link 8 63,970,245 64,029,438 RGD:13508589
G DROSHA drosha ribonuclease III RGD:13508589
G MRPL44 mitochondrial ribosomal protein L44 JBrowse link 37 29,681,751 29,689,489 RGD:13508589
G PRKRA protein activator of interferon induced protein kinase EIF2AK2 JBrowse link 36 22,061,226 22,080,324 RGD:13508589
G TARBP2 TARBP2 subunit of RISC loading complex JBrowse link 27 1,715,157 1,720,050 RGD:13508589
G TERT telomerase reverse transcriptase JBrowse link 34 11,288,622 11,307,790 RGD:9068941
recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CDC73 cell division cycle 73 JBrowse link 38 5,826,209 5,937,930 RGD:13508589
G POLR2D RNA polymerase II subunit D JBrowse link 19 22,754,118 22,774,054 RGD:13508589
recruitment of mRNA capping enzyme to RNA polymerase II holoenzyme complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G RAMAC RNA guanine-7 methyltransferase activating subunit JBrowse link 3 54,776,831 54,782,047 RGD:9068941
regulation of alternative mRNA splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CELF1 CUGBP Elav-like family member 1 JBrowse link 18 42,105,316 42,199,017 RGD:13508589
G CELF2 CUGBP Elav-like family member 2 JBrowse link 2 25,003,810 25,818,264 RGD:13508589
G CELF3 CUGBP Elav-like family member 3 JBrowse link 17 60,733,148 60,747,553 RGD:13508589
G CELF4 CUGBP Elav-like family member 4 JBrowse link 7 52,940,941 53,012,206 RGD:9068941
G CELF5 CUGBP Elav-like family member 5 JBrowse link 20 56,027,245 56,075,579 RGD:13508589
G CELF6 CUGBP Elav-like family member 6 JBrowse link 30 35,783,357 35,813,362 RGD:9068941
G DDX17 DEAD-box helicase 17 JBrowse link 10 26,282,592 26,303,128 RGD:9068941
G DDX5 DEAD-box helicase 5 JBrowse link 9 12,300,706 12,307,931 RGD:13508589
G DYRK1A dual specificity tyrosine phosphorylation regulated kinase 1A JBrowse link 31 32,564,970 32,655,232 RGD:9068941
G FAM172A family with sequence similarity 172 member A JBrowse link 3 15,281,442 15,695,303 RGD:13508589
G FMR1 FMRP translational regulator 1 JBrowse link X 116,249,079 116,287,008 RGD:13508589
G FXR1 FMR1 autosomal homolog 1 JBrowse link 34 14,129,978 14,192,016 RGD:13508589
G FXR2 FMR1 autosomal homolog 2 JBrowse link 5 32,510,830 32,525,680 RGD:13508589
G HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 JBrowse link 27 1,013,459 1,020,083 RGD:13508589
G HNRNPL heterogeneous nuclear ribonucleoprotein L JBrowse link 1 114,267,195 114,279,107 RGD:13508589
G HNRNPU heterogeneous nuclear ribonucleoprotein U JBrowse link 7 35,832,956 35,842,898 RGD:13508589
G KHDRBS1 KH RNA binding domain containing, signal transduction associated 1 JBrowse link 2 69,108,822 69,148,067 RGD:13508589
G KHDRBS2 KH RNA binding domain containing, signal transduction associated 2 JBrowse link 12 25,544,069 26,142,284 RGD:13508589
G KHDRBS3 KH RNA binding domain containing, signal transduction associated 3 JBrowse link 13 31,397,501 31,583,198 RGD:13508589
G LOC100682676 pre-mRNA-splicing regulator WTAP-like JBrowse link 17 53,694,953 53,695,735 RGD:13508589
G LOC607091 pre-mRNA-splicing regulator WTAP-like JBrowse link 25 5,602,446 5,604,899 RGD:13508589
G MAGOH mago homolog, exon junction complex subunit JBrowse link 5 55,688,443 55,699,741 RGD:9068941
G MBNL1 muscleblind like splicing regulator 1 JBrowse link 23 46,697,755 46,941,300 RGD:13508589
G MBNL2 muscleblind like splicing regulator 2 JBrowse link 22 47,568,335 47,729,901 RGD:13508589
G MBNL3 muscleblind like splicing regulator 3 JBrowse link X 103,257,410 103,370,903 RGD:13508589
G MYOD1 myogenic differentiation 1 JBrowse link 21 40,257,792 40,260,461 RGD:13508589
G NOVA1 NOVA alternative splicing regulator 1 JBrowse link 8 6,133,608 6,281,508 RGD:13508589
G NOVA2 NOVA alternative splicing regulator 2 JBrowse link 1 109,657,693 109,683,277 RGD:13508589
G NSRP1 nuclear speckle splicing regulatory protein 1 JBrowse link 9 44,155,516 44,209,902 RGD:9068941
G PTBP1 polypyrimidine tract binding protein 1 JBrowse link 20 57,806,450 57,818,435 RGD:13508589
G PUF60 poly(U) binding splicing factor 60 JBrowse link 13 37,375,781 37,387,969 RGD:13508589
G QKI QKI, KH domain containing RNA binding JBrowse link 1 51,800,294 51,956,891 RGD:13508589
G RBFOX1 RNA binding fox-1 homolog 1 JBrowse link 6 34,218,276 36,255,529 RGD:13508589
G RBFOX2 RNA binding fox-1 homolog 2 JBrowse link 10 28,284,836 28,494,618 RGD:13508589
G RBFOX3 RNA binding fox-1 homolog 3 JBrowse link 9 2,362,354 2,374,492 RGD:13508589
G RBM10 RNA binding motif protein 10 JBrowse link X 40,746,959 40,776,764 RGD:13508589
G RBM11 RNA binding motif protein 11 JBrowse link 31 11,204,273 11,217,526 RGD:13508589
G RBM14 RNA binding motif protein 14 JBrowse link 18 50,683,227 50,728,512 RGD:13508589
G RBM15 RNA binding motif protein 15 JBrowse link 6 41,645,765 41,653,621 RGD:13508589
G RBM15B RNA binding motif protein 15B JBrowse link 20 38,191,079 38,194,150 RGD:13508589
G RBM17 RNA binding motif protein 17 JBrowse link 2 29,828,720 29,853,922 RGD:13508589
G RBM19 RNA binding motif protein 19 JBrowse link 26 11,042,737 11,169,786 RGD:13508589
G RBM24 RNA binding motif protein 24 JBrowse link 35 16,255,076 16,294,967 RGD:9068941
G RBM25 RNA binding motif protein 25 JBrowse link 8 46,442,233 46,486,801 RGD:13508589
G RBM4B RNA binding motif protein 4B JBrowse link 18 50,676,138 50,686,061 RGD:13508589
G RBM5 RNA binding motif protein 5 JBrowse link 20 39,198,706 39,227,856 RGD:13508589
G RBM7 RNA binding motif protein 7 JBrowse link 5 18,950,393 18,959,844 RGD:13508589
G RBM8A RNA binding motif protein 8A JBrowse link 17 58,722,449 58,726,017 RGD:13508589
G RBMX RNA binding motif protein X-linked JBrowse link X 107,173,599 107,182,404 RGD:13508589
G REST RE1 silencing transcription factor JBrowse link 13 49,041,082 49,062,596 RGD:9068941
G RNPS1 RNA binding protein with serine rich domain 1 JBrowse link 6 38,719,713 38,729,437 RGD:13508589
G SAP18 Sin3A associated protein 18 JBrowse link 25 17,006,025 17,014,948 RGD:9068941
G SART3 spliceosome associated factor 3, U4/U6 recycling protein JBrowse link 26 18,308,065 18,345,903 RGD:13508589
G SF1 splicing factor 1 JBrowse link 18 52,380,058 52,393,833 RGD:13508589
G SREK1 splicing regulatory glutamic acid and lysine rich protein 1 JBrowse link 2 51,761,727 51,807,124 RGD:13508589
G SRRM4 serine/arginine repetitive matrix 4 JBrowse link 26 15,049,612 15,324,454 RGD:13508589
G SRSF1 serine and arginine rich splicing factor 1 JBrowse link 9 32,692,517 32,696,325 RGD:13508589
G SRSF12 serine and arginine rich splicing factor 12 JBrowse link 12 48,355,844 48,398,753 RGD:13508589
G SRSF2 serine and arginine rich splicing factor 2 JBrowse link 9 4,028,414 4,032,371 RGD:13508589
G SRSF3 serine and arginine rich splicing factor 3 JBrowse link 12 5,677,879 5,686,220 RGD:13508589
G SRSF4 serine and arginine rich splicing factor 4 JBrowse link 2 71,418,626 71,434,140 RGD:13508589
G SRSF5 serine and arginine rich splicing factor 5 JBrowse link 8 43,514,048 43,519,019 RGD:13508589
G SRSF6 serine and arginine rich splicing factor 6 JBrowse link 24 31,217,190 31,222,852 RGD:13508589
G SRSF7 serine and arginine rich splicing factor 7 JBrowse link 17 30,809,743 30,816,269 RGD:13508589
G SRSF9 serine and arginine rich splicing factor 9 JBrowse link 26 16,363,275 16,369,699 RGD:13508589
G THRAP3 thyroid hormone receptor associated protein 3 JBrowse link 15 5,955,469 6,022,442 RGD:13508589
G TRA2B transformer 2 beta homolog JBrowse link 34 18,637,725 18,656,869 RGD:9068941
G WDR55 WD repeat domain 55 JBrowse link 2 35,820,082 35,825,311 RGD:13508589
G WTAP WT1 associated protein JBrowse link 1 48,976,523 49,004,536 RGD:13508589
G YTHDC1 YTH domain containing 1 JBrowse link 13 58,818,424 58,858,241 RGD:13508589
G ZBTB7A zinc finger and BTB domain containing 7A JBrowse link 20 55,517,531 55,527,071 RGD:9068941
regulation of mRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AHCYL1 adenosylhomocysteinase like 1 JBrowse link 6 41,945,224 41,983,917 RGD:13508589
G PAPOLA poly(A) polymerase alpha JBrowse link 8 65,240,704 65,283,231 RGD:13508589
G ZFP36L1 ZFP36 ring finger protein like 1 JBrowse link 8 42,663,287 42,668,665 RGD:13508589
regulation of mRNA polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NCBP1 nuclear cap binding protein subunit 1 JBrowse link 11 54,938,250 54,974,536 RGD:9068941
G NCBP2 nuclear cap binding protein subunit 2 JBrowse link 33 29,911,457 29,943,596 RGD:9068941
G SNRPA small nuclear ribonucleoprotein polypeptide A JBrowse link 1 113,018,268 113,030,827 RGD:9068941
G ZC3H3 zinc finger CCCH-type containing 3 JBrowse link 13 37,128,915 37,214,643 RGD:13508589
regulation of mRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DHX9 DExH-box helicase 9 JBrowse link 7 16,233,763 16,292,576 RGD:13508589
G IWS1 interacts with SUPT6H, CTD assembly factor 1 JBrowse link 19 23,081,625 23,122,618 RGD:13508589
G LOC489591 cyclin-dependent kinase 11B JBrowse link 5 56,698,267 56,714,075 RGD:9068941
G NCBP1 nuclear cap binding protein subunit 1 JBrowse link 11 54,938,250 54,974,536 RGD:13508589
G NOVA1 NOVA alternative splicing regulator 1 JBrowse link 8 6,133,608 6,281,508 RGD:9068941
G PTCD2 pentatricopeptide repeat domain 2 JBrowse link 2 55,351,678 55,382,881 RGD:13508589
G SAFB scaffold attachment factor B JBrowse link 20 54,346,273 54,381,078 RGD:13508589
G SAFB2 scaffold attachment factor B2 JBrowse link 20 54,381,323 54,414,359 RGD:13508589
G SLTM SAFB like transcription modulator JBrowse link 30 23,858,626 23,902,042 RGD:13508589
G SRPK1 SRSF protein kinase 1 JBrowse link 12 4,941,292 5,029,580 RGD:13508589
G SRPK2 SRSF protein kinase 2 JBrowse link 18 14,991,187 15,243,124 RGD:13508589
G SRPK3 SRSF protein kinase 3 JBrowse link X 121,594,992 121,599,333 RGD:13508589
G SUPT6H SPT6 homolog, histone chaperone and transcription elongation factor JBrowse link 9 42,859,154 42,896,044 RGD:13508589
regulation of mRNA splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G C9H9orf78 chromosome 9 C9orf78 homolog JBrowse link 9 54,009,543 54,016,154 RGD:13508589
G HNRNPK heterogeneous nuclear ribonucleoprotein K JBrowse link 1 75,499,334 75,511,525 RGD:13508589
G JMJD6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase JBrowse link 9 4,037,307 4,076,119 RGD:9068941
G KHDRBS1 KH RNA binding domain containing, signal transduction associated 1 JBrowse link 2 69,108,822 69,148,067 RGD:9068941
G KHDRBS2 KH RNA binding domain containing, signal transduction associated 2 JBrowse link 12 25,544,069 26,142,284 RGD:9068941
G KHDRBS3 KH RNA binding domain containing, signal transduction associated 3 JBrowse link 13 31,397,501 31,583,198 RGD:9068941
G LARP7 La ribonucleoprotein 7, transcriptional regulator JBrowse link 32 32,421,648 32,439,431 RGD:9068941
G LOC100856585 protein SON JBrowse link 31 28,165,758 28,198,692 RGD:13508589
G METTL16 methyltransferase like 16 JBrowse link 9 46,491,503 46,566,752 RGD:13508589
RGD:9068941
G RBM23 RNA binding motif protein 23 JBrowse link 8 3,233,715 3,247,014 RGD:13508589
G RBM39 RNA binding motif protein 39 JBrowse link 24 24,618,966 24,648,384 RGD:13508589
G SON SON DNA and RNA binding protein JBrowse link 31 29,064,607 29,097,541 RGD:13508589
G SRSF10 serine and arginine rich splicing factor 10 JBrowse link 2 75,587,561 75,601,099 RGD:9068941
G SRSF3 serine and arginine rich splicing factor 3 JBrowse link 12 5,677,879 5,686,220 RGD:9068941
G TIA1 TIA1 cytotoxic granule associated RNA binding protein JBrowse link 10 68,768,080 68,798,869 RGD:13508589
G YTHDC1 YTH domain containing 1 JBrowse link 13 58,818,424 58,858,241 RGD:13508589
regulation of production of miRNAs involved in gene silencing by miRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TARBP2 TARBP2 subunit of RISC loading complex JBrowse link 27 1,715,157 1,720,050 RGD:13508589
regulation of production of siRNA involved in RNA interference term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TARBP2 TARBP2 subunit of RISC loading complex JBrowse link 27 1,715,157 1,720,050 RGD:13508589
regulation of RNA splicing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AFF2 AF4/FMR2 family member 2 JBrowse link X 116,849,294 117,167,875 RGD:13508589
G AHNAK AHNAK nucleoprotein JBrowse link 18 54,085,186 54,116,011 RGD:13508589
G AKAP17A A-kinase anchoring protein 17A JBrowse link X 1,031,392 1,042,457 RGD:13508589
G BRDT bromodomain testis associated JBrowse link 6 56,918,939 56,977,355 RGD:13508589
G CDK12 cyclin dependent kinase 12 JBrowse link 9 22,900,170 22,979,353 RGD:9068941
G CELF1 CUGBP Elav-like family member 1 JBrowse link 18 42,105,316 42,199,017 RGD:9068941
G CLK1 CDC like kinase 1 JBrowse link 37 10,054,230 10,065,416 RGD:13508589
G CLK2 CDC like kinase 2 JBrowse link 7 42,284,869 42,294,434 RGD:13508589
G CLK3 CDC like kinase 3 JBrowse link 30 37,706,895 37,719,693 RGD:13508589
G CLK4 CDC like kinase 4 JBrowse link 11 2,960,161 2,986,699 RGD:13508589
G ESRP1 epithelial splicing regulatory protein 1 JBrowse link 29 39,322,516 39,388,363 RGD:13508589
G ESRP2 epithelial splicing regulatory protein 2 JBrowse link 5 81,287,330 81,297,533 RGD:13508589
G FASTK Fas activated serine/threonine kinase JBrowse link 16 15,126,540 15,130,959 RGD:9068941
G FUS FUS RNA binding protein JBrowse link 6 17,059,904 17,071,227 RGD:13508589
G GRSF1 G-rich RNA sequence binding factor 1 JBrowse link 13 60,088,198 60,102,292 RGD:13508589
G HNRNPF heterogeneous nuclear ribonucleoprotein F JBrowse link 28 3,651,685 3,672,320 RGD:13508589
G HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 JBrowse link 11 2,050,753 2,059,999 RGD:13508589
G HNRNPH2 heterogeneous nuclear ribonucleoprotein H2 JBrowse link X 75,320,505 75,326,651 RGD:13508589
G HNRNPH3 heterogeneous nuclear ribonucleoprotein H3 JBrowse link 4 19,558,685 19,569,874 RGD:13508589
G HNRNPL heterogeneous nuclear ribonucleoprotein L JBrowse link 1 114,267,195 114,279,107 RGD:13508589
G HNRNPLL heterogeneous nuclear ribonucleoprotein L like JBrowse link 17 30,644,695 30,684,485 RGD:13508589
G LOC100856264 A-kinase anchor protein 17A RGD:13508589
G LOC100856585 protein SON JBrowse link 31 28,165,758 28,198,692 RGD:13508589
G MBNL1 muscleblind like splicing regulator 1 JBrowse link 23 46,697,755 46,941,300 RGD:9068941
G MBNL2 muscleblind like splicing regulator 2 JBrowse link 22 47,568,335 47,729,901 RGD:9068941
G MBNL3 muscleblind like splicing regulator 3 JBrowse link X 103,257,410 103,370,903 RGD:9068941
G METTL4 methyltransferase like 4 JBrowse link 7 69,229,717 69,268,223 RGD:13508589
G MYOD1 myogenic differentiation 1 JBrowse link 21 40,257,792 40,260,461 RGD:9068941
G PQBP1 polyglutamine binding protein 1 JBrowse link X 42,056,660 42,060,508 RGD:13508589
G PRX periaxin JBrowse link 1 113,279,940 113,294,042 RGD:9068941
G PTBP1 polypyrimidine tract binding protein 1 JBrowse link 20 57,806,450 57,818,435 RGD:13508589
G PTBP2 polypyrimidine tract binding protein 2 JBrowse link 6 52,870,944 52,948,673 RGD:13508589
G PTBP3 polypyrimidine tract binding protein 3 JBrowse link 11 66,727,670 66,847,755 RGD:13508589
G RBFOX1 RNA binding fox-1 homolog 1 JBrowse link 6 34,218,276 36,255,529 RGD:13508589
G RBFOX2 RNA binding fox-1 homolog 2 JBrowse link 10 28,284,836 28,494,618 RGD:13508589
G RBM12 RNA binding motif protein 12 JBrowse link 24 24,577,335 24,589,731 RGD:13508589
G RBM12B RNA binding motif protein 12B JBrowse link 29 38,631,313 38,641,998 RGD:13508589
G RBM20 RNA binding motif protein 20 JBrowse link 28 21,971,424 22,162,798 RGD:13508589
G RBM38 RNA binding motif protein 38 JBrowse link 24 42,396,356 42,410,543 RGD:13508589
G RRP1B ribosomal RNA processing 1B JBrowse link 31 37,652,584 37,670,396 RGD:13508589
G SNRNP70 small nuclear ribonucleoprotein U1 subunit 70 JBrowse link 1 107,340,484 107,356,280 RGD:9068941
G SON SON DNA and RNA binding protein JBrowse link 31 29,064,607 29,097,541 RGD:13508589
G SRRM4 serine/arginine repetitive matrix 4 JBrowse link 26 15,049,612 15,324,454 RGD:13508589
G SRSF10 serine and arginine rich splicing factor 10 JBrowse link 2 75,587,561 75,601,099 RGD:13508589
G TRA2B transformer 2 beta homolog JBrowse link 34 18,637,725 18,656,869 RGD:9068941
G ZNF326 zinc finger protein 326 JBrowse link 6 58,597,606 58,632,781 RGD:13508589
regulation of rRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NCL nucleolin JBrowse link 25 43,330,524 43,384,909 RGD:9068941
G USP36 ubiquitin specific peptidase 36 JBrowse link 9 2,547,316 2,587,360 RGD:13508589
RNA 3' uridylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LIN28A lin-28 homolog A JBrowse link 2 73,613,069 73,628,211 RGD:13508589
G TENT4A terminal nucleotidyltransferase 4A JBrowse link 34 7,021,743 7,063,049 RGD:13508589
G TENT4B terminal nucleotidyltransferase 4B JBrowse link 2 65,068,088 65,147,853 RGD:13508589
G TUT4 terminal uridylyl transferase 4 JBrowse link 15 8,832,208 8,958,136 RGD:13508589
G TUT7 terminal uridylyl transferase 7 JBrowse link 1 73,400,648 73,464,935 RGD:13508589
RNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CSTF3 cleavage stimulation factor subunit 3 JBrowse link 18 34,493,922 34,563,899 RGD:13508589
G LIN28A lin-28 homolog A JBrowse link 2 73,613,069 73,628,211 RGD:9068941
G LIN28B lin-28 homolog B JBrowse link 12 62,403,831 62,529,435 RGD:9068941
G PAPOLA poly(A) polymerase alpha JBrowse link 8 65,240,704 65,283,231 RGD:13508589
G PAPOLG poly(A) polymerase gamma JBrowse link 10 60,879,161 60,910,417 RGD:13508589
G TUT4 terminal uridylyl transferase 4 JBrowse link 15 8,832,208 8,958,136 RGD:9068941
G TUT7 terminal uridylyl transferase 7 JBrowse link 1 73,400,648 73,464,935 RGD:9068941
RNA 5'-cap (guanine-N7)-methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G RAMAC RNA guanine-7 methyltransferase activating subunit JBrowse link 3 54,776,831 54,782,047 RGD:13508589
G RNMT RNA guanine-7 methyltransferase JBrowse link 1 24,465,634 24,499,526 RGD:13508589
RNA 5'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PIWIL2 piwi like RNA-mediated gene silencing 2 JBrowse link 25 34,911,120 34,987,287 RGD:13508589
RNA splicing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CCAR2 cell cycle and apoptosis regulator 2 JBrowse link 25 34,660,026 34,674,129 RGD:13508589
G CCDC130 coiled-coil domain containing 130 JBrowse link 20 48,659,426 48,671,771 RGD:13508589
G CDK12 cyclin dependent kinase 12 JBrowse link 9 22,900,170 22,979,353 RGD:9068941
G CELF3 CUGBP Elav-like family member 3 JBrowse link 17 60,733,148 60,747,553 RGD:9068941
G DDX39B DExD-box helicase 39B JBrowse link 12 1,032,377 1,044,465 RGD:9068941
G DDX47 DEAD-box helicase 47 JBrowse link 27 33,509,959 33,525,496 RGD:13508589
G FUS FUS RNA binding protein JBrowse link 6 17,059,904 17,071,227 RGD:13508589
G HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 JBrowse link 27 1,013,459 1,020,083 RGD:9068941
G IVNS1ABP influenza virus NS1A binding protein JBrowse link 7 18,430,970 18,444,573 RGD:13508589
G LGALS3 galectin 3 JBrowse link 8 30,977,438 30,994,711 RGD:13508589
G LOC102152493 protein mago nashi homolog 2 JBrowse link 6 22,422,135 22,422,636 RGD:13508589
G LRP8 LDL receptor related protein 8 JBrowse link 5 55,604,878 55,684,666 RGD:13508589
G LSM5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 14 44,857,882 44,860,929 RGD:13508589
G LUC7L3 LUC7 like 3 pre-mRNA splicing factor JBrowse link 9 26,621,019 26,648,049 RGD:9068941
G MAGOHB mago homolog B, exon junction complex subunit JBrowse link 27 35,125,786 35,133,372 RGD:13508589
G MBNL1 muscleblind like splicing regulator 1 JBrowse link 23 46,697,755 46,941,300 RGD:9068941
G PNN pinin, desmosome associated protein JBrowse link 8 17,354,004 17,361,462 RGD:13508589
G PRPF18 pre-mRNA processing factor 18 JBrowse link 2 22,868,184 22,922,647 RGD:13508589
G QKI QKI, KH domain containing RNA binding JBrowse link 1 51,800,294 51,956,891 RGD:13508589
G RBFOX1 RNA binding fox-1 homolog 1 JBrowse link 6 34,218,276 36,255,529 RGD:13508589
G RBFOX2 RNA binding fox-1 homolog 2 JBrowse link 10 28,284,836 28,494,618 RGD:13508589
G RBFOX3 RNA binding fox-1 homolog 3 JBrowse link 9 2,362,354 2,374,492 RGD:13508589
G RBM10 RNA binding motif protein 10 JBrowse link X 40,746,959 40,776,764 RGD:13508589
G RNPS1 RNA binding protein with serine rich domain 1 JBrowse link 6 38,719,713 38,729,437 RGD:13508589
G RP9 RP9 pre-mRNA splicing factor JBrowse link 14 45,167,392 45,187,687 RGD:13508589
G RSRC1 arginine and serine rich coiled-coil 1 JBrowse link 23 51,492,912 51,890,603 RGD:9068941
G SART3 spliceosome associated factor 3, U4/U6 recycling protein JBrowse link 26 18,308,065 18,345,903 RGD:13508589
G SCAF11 SR-related CTD associated factor 11 JBrowse link 27 8,343,501 8,396,735 RGD:9068941
G SCNM1 sodium channel modifier 1 JBrowse link 17 60,231,034 60,233,349 RGD:13508589
G SLU7 SLU7 homolog, splicing factor JBrowse link 4 50,314,063 50,328,999 RGD:13508589
G SMU1 SMU1 DNA replication regulator and spliceosomal factor JBrowse link 11 50,172,679 50,195,719 RGD:13508589
G SNRNP27 small nuclear ribonucleoprotein U4/U6.U5 subunit 27 JBrowse link 10 68,531,541 68,541,233 RGD:13508589
G SNRPF small nuclear ribonucleoprotein polypeptide F JBrowse link 15 35,691,071 35,698,734 RGD:9068941
G SRPK2 SRSF protein kinase 2 JBrowse link 18 14,991,187 15,243,124 RGD:9068941
G SRSF1 serine and arginine rich splicing factor 1 JBrowse link 9 32,692,517 32,696,325 RGD:9068941
G SRSF11 serine and arginine rich splicing factor 11 JBrowse link 6 75,473,794 75,495,860 RGD:13508589
G SRSF7 serine and arginine rich splicing factor 7 JBrowse link 17 30,809,743 30,816,269 RGD:9068941
G TAF15 TATA-box binding protein associated factor 15 JBrowse link 9 37,842,772 37,873,302 RGD:13508589
G TARDBP TAR DNA binding protein JBrowse link 2 84,987,752 84,998,136 RGD:13508589
G TCERG1 transcription elongation regulator 1 JBrowse link 2 40,855,973 40,920,242 RGD:9068941
G THRAP3 thyroid hormone receptor associated protein 3 JBrowse link 15 5,955,469 6,022,442 RGD:13508589
G U2AF2 U2 small nuclear RNA auxiliary factor 2 JBrowse link 1 102,074,759 102,091,326 RGD:9068941
G USB1 U6 snRNA biogenesis phosphodiesterase 1 JBrowse link 2 58,535,173 58,549,877 RGD:13508589
G WBP11 WW domain binding protein 11 JBrowse link 27 31,805,590 31,822,602 RGD:9068941
G WBP4 WW domain binding protein 4 JBrowse link 22 9,504,525 9,565,230 RGD:13508589
G WT1 WT1 transcription factor JBrowse link 18 35,099,660 35,148,767 RGD:9068941
G YJU2 YJU2 splicing factor homolog JBrowse link 20 55,367,512 55,380,755 RGD:13508589
G ZNF638 zinc finger protein 638 JBrowse link 17 51,251,517 51,318,758 RGD:13508589
RNA splicing, via transesterification reactions term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DBR1 debranching RNA lariats 1 JBrowse link 23 34,375,691 34,388,317 RGD:9068941
G SCAF11 SR-related CTD associated factor 11 JBrowse link 27 8,343,501 8,396,735 RGD:9068941
G SLU7 SLU7 homolog, splicing factor JBrowse link 4 50,314,063 50,328,999 RGD:9068941
G SRSF10 serine and arginine rich splicing factor 10 JBrowse link 2 75,587,561 75,601,099 RGD:9068941
G WDR83 WD repeat domain 83 JBrowse link 20 49,439,387 49,443,661 RGD:9068941
rRNA (guanine-N7)-methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BUD23 BUD23 rRNA methyltransferase and ribosome maturation factor JBrowse link 6 6,583,612 6,596,538 RGD:13508589
G TRMT112 tRNA methyltransferase subunit 11-2 JBrowse link 18 52,754,379 52,755,596 RGD:13508589
rRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ERI1 exoribonuclease 1 JBrowse link 16 35,441,304 35,499,501 RGD:9068941
rRNA acetylation involved in maturation of SSU-rRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NAT10 N-acetyltransferase 10 JBrowse link 18 33,654,701 33,692,642 RGD:13508589
rRNA base methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G EMG1 EMG1 N1-specific pseudouridine methyltransferase JBrowse link 27 38,069,089 38,075,577 RGD:13508589
G METTL15 methyltransferase like 15 JBrowse link 21 48,578,735 48,893,104 RGD:13508589
G METTL16 methyltransferase like 16 JBrowse link 9 46,491,503 46,566,752 RGD:13508589
G NOP2 NOP2 nucleolar protein JBrowse link 27 38,441,259 38,453,946 RGD:13508589
G NSUN5 NOP2/Sun RNA methyl