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ONTOLOGY REPORT - ANNOTATIONS


Term:RNA processing
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Accession:GO:0006396 term browser browse the term
Definition:Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
Synonyms:alt_id: GO:0006394
 xref: Wikipedia:Post-transcriptional_modification


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RNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ADAD1 adenosine deaminase domain containing 1 JBrowse link 8 101,644,084 101,715,418 RGD:14298760
G ADAD2 adenosine deaminase domain containing 2 JBrowse link 6 4,437,797 4,444,068 RGD:14298760
G ADAR adenosine deaminase RNA specific JBrowse link 4 95,154,230 95,197,308 RGD:14298760
G ADARB1 adenosine deaminase RNA specific B1 JBrowse link 13 207,746,915 207,791,809 RGD:14298760
G ADARB2 adenosine deaminase RNA specific B2 (inactive) JBrowse link 10 68,013,531 68,468,583 RGD:14298760
G ADAT1 adenosine deaminase tRNA specific 1 JBrowse link 6 12,076,319 12,107,937 RGD:14298760
G CCNL1 cyclin L1 JBrowse link 13 96,984,542 97,004,401 RGD:14298760
G CHERP calcium homeostasis endoplasmic reticulum protein JBrowse link 2 61,062,960 61,083,427 RGD:14298760
G CLP1 cleavage factor polyribonucleotide kinase subunit 1 JBrowse link 2 13,282,157 13,285,208 RGD:14298760
G CRNKL1 crooked neck pre-mRNA splicing factor 1 JBrowse link 17 28,079,541 28,111,871 RGD:14298760
G CSTF3 cleavage stimulation factor subunit 3 JBrowse link 2 27,769,457 27,850,382 RGD:14298760
G DDX54 DEAD-box helicase 54 JBrowse link 14 38,650,660 38,668,266 RGD:14298760
G DICER1 dicer 1, ribonuclease III JBrowse link 7 116,361,630 116,436,471 RGD:14298760
G DKC1 dyskerin pseudouridine synthase 1 JBrowse link X 125,218,928 125,228,881 RGD:14298760
G DROSHA drosha ribonuclease III JBrowse link 16 17,727,695 17,847,954 RGD:14298760
G ELAVL4 ELAV like RNA binding protein 4 JBrowse link 6 161,784,146 161,928,953 RGD:9068941
G EXOSC1 exosome component 1 JBrowse link 14 108,834,609 108,842,827 RGD:14298760
G EXOSC10 exosome component 10 JBrowse link 6 71,258,988 71,282,802 RGD:14298760
G EXOSC8 exosome component 8 JBrowse link 11 12,817,081 12,825,847 RGD:14298760
G EXOSC9 exosome component 9 JBrowse link 8 102,265,656 102,278,179 RGD:14298760
G GRSF1 G-rich RNA sequence binding factor 1 JBrowse link 8 67,586,935 67,607,422 RGD:14298760
G HNRNPK heterogeneous nuclear ribonucleoprotein K JBrowse link 10 30,975,639 30,987,955 RGD:14298760
G HNRNPUL1 heterogeneous nuclear ribonucleoprotein U like 1 JBrowse link 6 49,280,296 49,315,967 RGD:14298760
G LARP6 La ribonucleoprotein 6, translational regulator JBrowse link 1 168,508,472 168,530,439 RGD:14298760
G LOC102161120 heterogeneous nuclear ribonucleoprotein K pseudogene JBrowse link 14 65,843,016 65,845,857 RGD:14298760
G MRM1 mitochondrial rRNA methyltransferase 1 JBrowse link 12 38,123,505 38,143,894 RGD:14298760
G MRM3 mitochondrial rRNA methyltransferase 3 JBrowse link 12 47,077,812 47,087,409 RGD:14298760
G MRPL44 mitochondrial ribosomal protein L44 JBrowse link 15 125,732,419 125,739,819 RGD:14298760
G NOL9 nucleolar protein 9 JBrowse link 6 67,375,212 67,396,442 RGD:14298760
G NRDE2 NRDE-2, necessary for RNA interference, domain containing JBrowse link 7 112,039,949 112,090,632 RGD:14298760
G PNPT1 polyribonucleotide nucleotidyltransferase 1 JBrowse link 3 85,595,356 85,639,665 RGD:14298760
G PRPF39 pre-mRNA processing factor 39 JBrowse link 1 175,285,219 175,317,245 RGD:14298760
G RCL1 RNA terminal phosphate cyclase like 1 JBrowse link 1 217,142,965 217,204,960 RGD:14298760
G RNASEL ribonuclease L JBrowse link 9 123,895,045 123,910,386 RGD:14298760
G RNGTT RNA guanylyltransferase and 5'-phosphatase JBrowse link 1 56,852,864 57,061,985 RGD:9068941
G RTCA RNA 3'-terminal phosphate cyclase JBrowse link 4 117,852,776 117,875,630 RGD:14298760
G SART3 spliceosome associated factor 3, U4/U6 recycling protein JBrowse link 14 42,223,752 42,259,992 RGD:14298760
G SF3A1 splicing factor 3a subunit 1 JBrowse link 14 47,312,460 47,335,448 RGD:14298760
G SFSWAP splicing factor SWAP JBrowse link 14 23,516,253 23,594,252 RGD:14298760
G SUGP1 SURP and G-patch domain containing 1 JBrowse link 2 58,574,434 58,615,054 RGD:14298760
G SUGP2 SURP and G-patch domain containing 2 JBrowse link 2 58,828,009 58,865,859 RGD:14298760
G TARBP1 TAR (HIV-1) RNA binding protein 1 JBrowse link 14 56,669,564 56,746,542 RGD:14298760
G TMTC1 transmembrane O-mannosyltransferase targeting cadherins 1 JBrowse link 5 43,913,710 44,222,899 RGD:14298760
G TRMT2A tRNA methyltransferase 2 homolog A JBrowse link 14 51,489,889 51,494,204 RGD:14298760
G TRMT2B tRNA methyltransferase 2 homolog B JBrowse link X 82,638,456 82,741,659 RGD:14298760
G TRUB1 TruB pseudouridine synthase family member 1 JBrowse link 14 125,262,142 125,328,604 RGD:14298760
G TRUB2 TruB pseudouridine synthase family member 2 JBrowse link 1 268,745,815 268,757,771 RGD:14298760
G U2SURP U2 snRNP associated SURP domain containing JBrowse link 13 83,704,501 83,759,800 RGD:14298760
G WBP11 WW domain binding protein 11 JBrowse link 5 57,749,948 57,766,788 RGD:14298760
G WDHD1 WD repeat and HMG-box DNA binding protein 1 JBrowse link 1 184,300,291 184,378,974 RGD:9068941
G XAB2 XPA binding protein 2 JBrowse link 2 71,521,034 71,530,468 RGD:14298760
G ZFC3H1 zinc finger C3H1-type containing JBrowse link 5 35,617,257 35,671,191 RGD:14298760
7-methylguanosine cap hypermethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TGS1 trimethylguanosine synthase 1 JBrowse link 4 75,937,489 75,969,152 RGD:14298760
7-methylguanosine mRNA capping term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CMTR1 cap methyltransferase 1 JBrowse link 7 33,000,499 33,063,739 RGD:14298760
G CMTR2 cap methyltransferase 2 JBrowse link 6 14,325,869 14,334,043 RGD:14298760
G NCBP1 nuclear cap binding protein subunit 1 JBrowse link 1 239,492,573 239,543,925 RGD:9068941
G RAMAC RNA guanine-7 methyltransferase activating subunit JBrowse link 7 51,948,190 51,953,605 RGD:9068941
G RNF8 ring finger protein 8 JBrowse link 7 32,931,786 32,969,536 RGD:14298760
G RNGTT RNA guanylyltransferase and 5'-phosphatase JBrowse link 1 56,852,864 57,061,985 RGD:14298760
G RNMT RNA guanine-7 methyltransferase JBrowse link 6 96,338,283 96,362,814 RGD:14298760
7-methylguanosine RNA capping term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TGS1 trimethylguanosine synthase 1 JBrowse link 4 75,937,489 75,969,152 RGD:14298760
alternative mRNA splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CDK13 cyclin dependent kinase 13 JBrowse link 18 54,310,311 54,430,060 RGD:14298760
G CELF4 CUGBP Elav-like family member 4 JBrowse link 6 121,065,604 121,381,052 RGD:14298760
G DDX17 DEAD-box helicase 17 JBrowse link 5 9,485,792 9,505,157 RGD:14298760
G DDX5 DEAD-box helicase 5 JBrowse link 12 14,571,712 14,580,740 RGD:14298760
G DHX9 DExH-box helicase 9 JBrowse link 9 124,141,929 124,183,838 RGD:14298760
G ESRP1 epithelial splicing regulatory protein 1 JBrowse link 4 41,993,944 42,061,706 RGD:9068941
G ESRP2 epithelial splicing regulatory protein 2 JBrowse link 6 28,804,425 28,814,478 RGD:14298760
G HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 JBrowse link 5 19,485,033 19,491,418 RGD:9068941
G HNRNPM heterogeneous nuclear ribonucleoprotein M JBrowse link 2 70,813,745 70,858,903 RGD:14298760
G INSR insulin receptor JBrowse link 2 71,797,209 71,939,923 RGD:9068941
G KDM1A lysine demethylase 1A JBrowse link 6 80,903,407 80,971,875 RGD:9068941
G MBNL1 muscleblind like splicing regulator 1 JBrowse link 13 92,491,778 92,696,235 RGD:9068941
G PQBP1 polyglutamine binding protein 1 JBrowse link X 42,976,086 42,981,732 RGD:14298760
G PUF60 poly(U) binding splicing factor 60 JBrowse link 4 812,137 824,321 RGD:14298760
G RBM17 RNA binding motif protein 17 JBrowse link 10 64,886,433 64,909,006 RGD:14298760
G RSRC1 arginine and serine rich coiled-coil 1 JBrowse link 13 97,893,815 98,338,108 RGD:14298760
G SCNM1 sodium channel modifier 1 JBrowse link 4 98,079,844 98,082,374 RGD:9068941
G SFPQ splicing factor proline and glutamine rich JBrowse link 6 91,391,552 91,408,236 RGD:14298760
G SFSWAP splicing factor SWAP JBrowse link 14 23,516,253 23,594,252 RGD:14298760
G SLU7 SLU7 homolog, splicing factor JBrowse link 16 63,118,426 63,145,655 RGD:14298760
G SRSF1 serine and arginine rich splicing factor 1 JBrowse link 12 34,278,363 34,282,164 RGD:9068941
G SRSF6 serine and arginine rich splicing factor 6 JBrowse link 17 46,119,612 46,122,540 RGD:14298760
G ZBTB17 zinc finger and BTB domain containing 17 JBrowse link 6 75,108,728 75,144,103 RGD:14298760
box C/D snoRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FBL fibrillarin JBrowse link 6 48,314,782 48,326,433 RGD:14298760
G LARP7 La ribonucleoprotein 7, transcriptional regulator JBrowse link 8 110,069,565 110,089,789 RGD:9068941
G LOC100512568 rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1 JBrowse link 16 55,351,616 55,354,642 RGD:14298760
box H/ACA snoRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DKC1 dyskerin pseudouridine synthase 1 JBrowse link X 125,218,928 125,228,881 RGD:14298760
G PARN poly(A)-specific ribonuclease JBrowse link 3 28,616,808 28,802,506 RGD:9068941
cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BOP1 BOP1 ribosomal biogenesis factor JBrowse link 4 486,562 507,141 RGD:9068941
G NOL9 nucleolar protein 9 JBrowse link 6 67,375,212 67,396,442 RGD:14298760
G NPM1 nucleophosmin 1 JBrowse link 16 52,767,263 52,781,862 RGD:9068941
cleavage involved in rRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NHP2 NHP2 ribonucleoprotein JBrowse link 2 80,223,439 80,227,614 RGD:14298760
G NOB1 NIN1 (RPN12) binding protein 1 homolog JBrowse link 6 17,233,863 17,245,451 RGD:14298760
G RRP36 ribosomal RNA processing 36 JBrowse link 7 38,087,258 38,094,548 RGD:14298760
conversion of ds siRNA to ss siRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DICER1 dicer 1, ribonuclease III JBrowse link 7 116,361,630 116,436,471 RGD:9068941
conversion of ds siRNA to ss siRNA involved in RNA interference term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DICER1 dicer 1, ribonuclease III JBrowse link 7 116,361,630 116,436,471 RGD:14298760
conversion of methionyl-tRNA to N-formyl-methionyl-tRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G MTFMT mitochondrial methionyl-tRNA formyltransferase JBrowse link 1 106,970,620 107,001,563 RGD:14298760
endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ABT1 activator of basal transcription 1 JBrowse link 7 21,024,641 21,027,815 RGD:14298760
G FCF1 FCF1 rRNA-processing protein JBrowse link 7 97,940,919 97,961,268 RGD:14298760
G RCL1 RNA terminal phosphate cyclase like 1 JBrowse link 1 217,142,965 217,204,960 RGD:14298760
G UTP23 UTP23 small subunit processome component JBrowse link 4 21,934,796 21,940,994 RGD:14298760
endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ABT1 activator of basal transcription 1 JBrowse link 7 21,024,641 21,027,815 RGD:14298760
G FCF1 FCF1 rRNA-processing protein JBrowse link 7 97,940,919 97,961,268 RGD:14298760
G KRI1 KRI1 homolog JBrowse link 2 69,328,182 69,337,104 RGD:14298760
G LOC100518848 40S ribosomal protein S21 RGD:14298760
G RCL1 RNA terminal phosphate cyclase like 1 JBrowse link 1 217,142,965 217,204,960 RGD:14298760
G RPP40 ribonuclease P/MRP subunit p40 JBrowse link 7 2,990,405 3,042,423 RGD:14298760
G RPS21 ribosomal protein S21 JBrowse link 17 61,763,606 61,764,823 RGD:14298760
G RRS1 ribosome biogenesis regulator 1 homolog JBrowse link 4 68,285,803 68,288,213 RGD:14298760
endonucleolytic cleavage involved in tRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G RPP40 ribonuclease P/MRP subunit p40 JBrowse link 7 2,990,405 3,042,423 RGD:14298760
endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BMS1 BMS1 ribosome biogenesis factor JBrowse link 14 61,056,075 61,125,984 RGD:14298760
G RCL1 RNA terminal phosphate cyclase like 1 JBrowse link 1 217,142,965 217,204,960 RGD:14298760
G TSR1 TSR1 ribosome maturation factor JBrowse link 12 48,404,306 48,417,622 RGD:14298760
endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LOC100518848 40S ribosomal protein S21 RGD:14298760
G RPS21 ribosomal protein S21 JBrowse link 17 61,763,606 61,764,823 RGD:14298760
endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ABT1 activator of basal transcription 1 JBrowse link 7 21,024,641 21,027,815 RGD:14298760
enzyme-directed rRNA 2'-O-methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FTSJ3 FtsJ RNA 2'-O-methyltransferase 3 JBrowse link 12 15,105,642 15,115,025 RGD:14298760
enzyme-directed rRNA pseudouridine synthesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DKC1 dyskerin pseudouridine synthase 1 JBrowse link X 125,218,928 125,228,881 RGD:14298760
G RPUSD3 RNA pseudouridine synthase D3 JBrowse link 13 66,126,126 66,133,774 RGD:14298760
G RPUSD4 RNA pseudouridine synthase D4 JBrowse link 9 53,295,854 53,309,192 RGD:14298760
G TSR3 TSR3 ribosome maturation factor JBrowse link 3 40,534,222 40,536,773 RGD:14298760
exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ERI1 exoribonuclease 1 JBrowse link 15 56,091,790 56,123,520 RGD:14298760
G ERI3 ERI1 exoribonuclease family member 3 JBrowse link 6 166,957,241 167,082,631 RGD:14298760
G EXOSC10 exosome component 10 JBrowse link 6 71,258,988 71,282,802 RGD:14298760
G EXOSC2 exosome component 2 JBrowse link 1 270,748,534 270,757,717 RGD:14298760
G EXOSC3 exosome component 3 JBrowse link 1 238,536,341 238,541,756 RGD:14298760
G EXOSC7 exosome component 7 JBrowse link 13 28,176,806 28,206,435 RGD:14298760
G EXOSC8 exosome component 8 JBrowse link 11 12,817,081 12,825,847 RGD:14298760
generation of catalytic spliceosome for first transesterification step term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PRPF19 pre-mRNA processing factor 19 JBrowse link 2 10,851,779 10,860,315 RGD:14298760
G XAB2 XPA binding protein 2 JBrowse link 2 71,521,034 71,530,468 RGD:14298760
generation of catalytic spliceosome for second transesterification step term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LOC102162880 pre-mRNA-splicing factor ISY1 homolog JBrowse link 13 71,601,737 71,622,835 RGD:14298760
G PRPF18 pre-mRNA processing factor 18 JBrowse link 10 48,062,229 48,122,222 RGD:14298760
maturation of 5.8S rRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G C1D C1D nuclear receptor corepressor JBrowse link 3 74,133,665 74,153,756 RGD:14298760
G EIF6 eukaryotic translation initiation factor 6 JBrowse link 17 38,638,295 38,643,918 RGD:14298760
G EXOSC10 exosome component 10 JBrowse link 6 71,258,988 71,282,802 RGD:9068941
G EXOSC4 exosome component 4 JBrowse link 4 618,993 621,336 RGD:14298760
G LAS1L LAS1 like ribosome biogenesis factor JBrowse link X 51,753,600 51,773,416 RGD:14298760
G MAK16 MAK16 homolog RGD:14298760
G MPHOSPH6 M-phase phosphoprotein 6 JBrowse link 6 6,254,522 6,271,021 RGD:14298760
G MTREX Mtr4 exosome RNA helicase JBrowse link 16 34,478,227 34,605,508 RGD:14298760
G NOL9 nucleolar protein 9 JBrowse link 6 67,375,212 67,396,442 RGD:9068941
G NSA2 NSA2 ribosome biogenesis factor JBrowse link 2 83,843,893 83,851,232 RGD:14298760
G PRKDC protein kinase, DNA-activated, catalytic subunit JBrowse link 4 79,687,375 79,850,146 RGD:9068941
G RPF1 ribosome production factor 1 homolog JBrowse link 6 129,256,040 129,271,038 RGD:14298760
G RRP15 ribosomal RNA processing 15 homolog JBrowse link 10 8,253,798 8,296,143 RGD:14298760
maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FTSJ3 FtsJ RNA 2'-O-methyltransferase 3 JBrowse link 12 15,105,642 15,115,025 RGD:14298760
G PES1 pescadillo ribosomal biogenesis factor 1 JBrowse link 14 47,478,378 47,495,983 RGD:14298760
G URB1 URB1 ribosome biogenesis homolog JBrowse link 13 195,974,790 196,047,882 RGD:14298760
G WDR12 WD repeat domain 12 JBrowse link 15 106,380,748 106,410,723 RGD:14298760
maturation of 5S rRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SART1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP JBrowse link 2 6,355,690 6,373,342 RGD:14298760
maturation of LSU-rRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G EIF6 eukaryotic translation initiation factor 6 JBrowse link 17 38,638,295 38,643,918 RGD:14298760
G LAS1L LAS1 like ribosome biogenesis factor JBrowse link X 51,753,600 51,773,416 RGD:14298760
G LOC100155098 NHP2-like protein 1 pseudogene JBrowse link X 76,457,649 76,458,203 RGD:14298760
G LOC100627129 60S ribosomal protein L10a-like JBrowse link 13 7,207,897 7,208,710 RGD:14298760
G MAK16 MAK16 homolog RGD:14298760
G MRPL1 mitochondrial ribosomal protein L1 JBrowse link 8 73,305,444 73,423,524 RGD:14298760
G NHP2 NHP2 ribonucleoprotein JBrowse link 2 80,223,439 80,227,614 RGD:14298760
G NOP2 NOP2 nucleolar protein JBrowse link 5 64,106,013 64,115,582 RGD:14298760
G NSA2 NSA2 ribosome biogenesis factor JBrowse link 2 83,843,893 83,851,232 RGD:14298760
G RPF1 ribosome production factor 1 homolog JBrowse link 6 129,256,040 129,271,038 RGD:14298760
G RPF2 ribosome production factor 2 homolog JBrowse link 1 76,917,114 76,959,227 RGD:14298760
G RPL10A ribosomal protein L10a JBrowse link 7 31,327,763 31,330,624 RGD:14298760
G RPL7A ribosomal protein L7a JBrowse link 1 272,961,421 272,965,636 RGD:14298760
G RRP15 ribosomal RNA processing 15 homolog JBrowse link 10 8,253,798 8,296,143 RGD:14298760
G RSL1D1 ribosomal L1 domain containing 1 JBrowse link 3 31,278,394 31,291,205 RGD:14298760
G SNU13 small nuclear ribonucleoprotein 13 JBrowse link 5 6,891,014 6,900,026 RGD:14298760
maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BOP1 BOP1 ribosomal biogenesis factor JBrowse link 4 486,562 507,141 RGD:9068941
G DDX18 DEAD-box helicase 18 JBrowse link 15 23,425,674 23,442,985 RGD:14298760
G FTSJ3 FtsJ RNA 2'-O-methyltransferase 3 JBrowse link 12 15,105,642 15,115,025 RGD:14298760
G GTPBP4 GTP binding protein 4 JBrowse link 10 68,547,316 68,566,040 RGD:14298760
G NIFK nucleolar protein interacting with the FHA domain of MKI67 JBrowse link 15 29,719,024 29,734,811 RGD:14298760
G PES1 pescadillo ribosomal biogenesis factor 1 JBrowse link 14 47,478,378 47,495,983 RGD:14298760
G RPF2 ribosome production factor 2 homolog JBrowse link 1 76,917,114 76,959,227 RGD:14298760
G RPL35 ribosomal protein L35 JBrowse link 1 265,637,266 265,642,278 RGD:14298760
G RPL7 ribosomal protein L7 JBrowse link 4 62,602,430 62,605,892 RGD:14298760
G RPL7L1 ribosomal protein L7 like 1 JBrowse link 7 37,940,549 37,948,258 RGD:14298760
G URB1 URB1 ribosome biogenesis homolog JBrowse link 13 195,974,790 196,047,882 RGD:14298760
G WDR12 WD repeat domain 12 JBrowse link 15 106,380,748 106,410,723 RGD:14298760
G ZNHIT3 zinc finger HIT-type containing 3 JBrowse link 12 38,013,931 38,027,928 RGD:14298760
G ZNHIT6 zinc finger HIT-type containing 6 JBrowse link 4 130,298,109 130,409,569 RGD:14298760
maturation of SSU-rRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DDX52 DExD-box helicase 52 JBrowse link 12 39,072,310 39,095,558 RGD:14298760
G LOC100155098 NHP2-like protein 1 pseudogene JBrowse link X 76,457,649 76,458,203 RGD:14298760
G LSM6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 8 82,409,170 82,428,501 RGD:14298760
G NOB1 NIN1 (RPN12) binding protein 1 homolog JBrowse link 6 17,233,863 17,245,451 RGD:14298760
G NOL11 nucleolar protein 11 JBrowse link 12 14,035,649 14,058,421 RGD:14298760
G NOP14 NOP14 nucleolar protein JBrowse link 8 1,717,019 1,737,971 RGD:14298760
G RIOK1 RIO kinase 1 JBrowse link 7 4,750,766 4,776,678 RGD:14298760
G RIOK2 RIO kinase 2 JBrowse link 2 103,802,044 103,823,566 RGD:14298760
G RIOK3 RIO kinase 3 JBrowse link 6 108,338,986 108,363,872 RGD:14298760
G RPS19 ribosomal protein S19 JBrowse link 6 50,003,198 50,010,135 RGD:9068941
G RPS28 ribosomal protein S28 JBrowse link 2 70,953,706 70,954,862 RGD:14298760
G SNU13 small nuclear ribonucleoprotein 13 JBrowse link 5 6,891,014 6,900,026 RGD:14298760
G SRFBP1 serum response factor binding protein 1 JBrowse link 2 125,507,744 125,574,751 RGD:14298760
G TSR3 TSR3 ribosome maturation factor JBrowse link 3 40,534,222 40,536,773 RGD:14298760
G UTP4 UTP4 small subunit processome component JBrowse link 6 17,784,908 17,818,417 RGD:9068941
G WDR3 WD repeat domain 3 JBrowse link 4 102,841,459 102,878,636 RGD:14298760
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BMS1 BMS1 ribosome biogenesis factor JBrowse link 14 61,056,075 61,125,984 RGD:14298760
G BYSL bystin like JBrowse link 7 37,074,517 37,086,753 RGD:14298760
G COPRS coordinator of PRMT5 and differentiation stimulator JBrowse link 12 43,091,181 43,097,998 RGD:14298760
G DCAF13 DDB1 and CUL4 associated factor 13 JBrowse link 4 33,672,867 33,704,888 RGD:14298760
G DHX37 DEAH-box helicase 37 JBrowse link 14 28,206,152 28,242,436 RGD:14298760
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit JBrowse link 6 51,734,318 51,757,508 RGD:14298760
G FAM207A family with sequence similarity 207 member A JBrowse link 13 207,560,855 207,588,502 RGD:14298760
G GTF2H5 general transcription factor IIH subunit 5 JBrowse link 1 8,928,280 8,935,030 RGD:9068941
G HEATR1 HEAT repeat containing 1 JBrowse link 14 54,821,073 54,870,873 RGD:14298760
G HELB DNA helicase B JBrowse link 5 30,645,378 30,696,488 RGD:14298760
G LOC100515676 40S ribosomal protein S14 JBrowse link 8 125,703,823 125,704,465 RGD:14298760
G MRPS11 mitochondrial ribosomal protein S11 JBrowse link 1 191,310,547 191,321,951 RGD:14298760
G NGDN neuroguidin JBrowse link 7 75,621,334 75,629,447 RGD:14298760
G NOL10 nucleolar protein 10 JBrowse link 3 125,861,422 125,956,626 RGD:14298760
G PWP2 PWP2 small subunit processome component JBrowse link 13 207,015,047 207,031,752 RGD:14298760
G RPS19 ribosomal protein S19 JBrowse link 6 50,003,198 50,010,135 RGD:9068941
G RPS8 ribosomal protein S8 JBrowse link 6 166,550,574 166,553,289 RGD:14298760
G TSR1 TSR1 ribosome maturation factor JBrowse link 12 48,404,306 48,417,622 RGD:14298760
G TSR2 TSR2 ribosome maturation factor JBrowse link X 47,186,610 47,192,465 RGD:14298760
G UTP25 UTP25 small subunit processor component JBrowse link 9 133,115,177 133,141,258 RGD:14298760
G UTP3 UTP3 small subunit processome component JBrowse link 8 67,475,971 67,477,587 RGD:14298760
G UTP4 UTP4 small subunit processome component JBrowse link 6 17,784,908 17,818,417 RGD:14298760
G UTP6 UTP6 small subunit processome component JBrowse link 12 43,061,579 43,089,479 RGD:14298760
G WDR46 WD repeat domain 46 JBrowse link 7 29,645,128 29,653,567 RGD:14298760
mitochondrial mRNA polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PNPT1 polyribonucleotide nucleotidyltransferase 1 JBrowse link 3 85,595,356 85,639,665 RGD:14298760
mitochondrial mRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TBRG4 transforming growth factor beta regulator 4 JBrowse link 18 50,366,896 50,378,086 RGD:14298760
mitochondrial RNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PNPT1 polyribonucleotide nucleotidyltransferase 1 JBrowse link 3 85,595,356 85,639,665 RGD:14298760
G SUPV3L1 Suv3 like RNA helicase JBrowse link 14 72,245,526 72,272,948 RGD:14298760
mitochondrial RNA 5'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PNPT1 polyribonucleotide nucleotidyltransferase 1 JBrowse link 3 85,595,356 85,639,665 RGD:14298760
G TRMT10C tRNA methyltransferase 10C, mitochondrial RNase P subunit JBrowse link 13 157,495,075 157,522,349 RGD:9068941
mitochondrial RNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FASTKD5 FAST kinase domains 5 JBrowse link 17 32,520,625 32,532,786 RGD:9068941
G PNPT1 polyribonucleotide nucleotidyltransferase 1 JBrowse link 3 85,595,356 85,639,665 RGD:14298760
mitochondrial tRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HSD17B10 hydroxysteroid 17-beta dehydrogenase 10 JBrowse link X 46,218,540 46,220,942 RGD:14298760
G TRMT10C tRNA methyltransferase 10C, mitochondrial RNase P subunit JBrowse link 13 157,495,075 157,522,349 RGD:14298760
G TRNT1 tRNA nucleotidyl transferase 1 JBrowse link 13 59,647,835 59,736,054 RGD:14298760
mitochondrial tRNA 3'-trailer cleavage, endonucleolytic term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ELAC2 elaC ribonuclease Z 2 JBrowse link 12 57,206,596 57,238,438 RGD:14298760
mitochondrial tRNA 5'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HSD17B10 hydroxysteroid 17-beta dehydrogenase 10 JBrowse link X 46,218,540 46,220,942 RGD:14298760
G PRORP protein only RNase P catalytic subunit JBrowse link 7 64,620,514 64,763,272 RGD:9068941
G TRMT10C tRNA methyltransferase 10C, mitochondrial RNase P subunit JBrowse link 13 157,495,075 157,522,349 RGD:14298760
mitochondrial tRNA methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G HSD17B10 hydroxysteroid 17-beta dehydrogenase 10 JBrowse link X 46,218,540 46,220,942 RGD:14298760
G TRMT5 tRNA methyltransferase 5 JBrowse link 1 189,909,654 189,923,308 RGD:14298760
G TRMT61B tRNA methyltransferase 61B JBrowse link 3 110,383,423 110,400,272 RGD:14298760
mitochondrial tRNA modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CDK5RAP1 CDK5 regulatory subunit associated protein 1 JBrowse link 17 36,877,570 36,911,344 RGD:9068941
mitochondrial tRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TRMT10A tRNA methyltransferase 10A JBrowse link 8 120,879,067 120,917,442 RGD:14298760
G TRMT10B tRNA methyltransferase 10B JBrowse link 1 238,516,042 238,536,372 RGD:14298760
G TRMT10C tRNA methyltransferase 10C, mitochondrial RNase P subunit JBrowse link 13 157,495,075 157,522,349 RGD:14298760
mitochondrial tRNA wobble uridine modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G MTO1 mitochondrial tRNA translation optimization 1 JBrowse link 1 92,447,156 92,472,488 RGD:14298760
mRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CLP1 cleavage factor polyribonucleotide kinase subunit 1 JBrowse link 2 13,282,157 13,285,208 RGD:14298760
G RPRD1A regulation of nuclear pre-mRNA domain containing 1A JBrowse link 6 119,762,810 119,834,022 RGD:14298760
G RPRD1B regulation of nuclear pre-mRNA domain containing 1B JBrowse link 17 41,093,970 41,172,617 RGD:14298760
G RPRD2 regulation of nuclear pre-mRNA domain containing 2 JBrowse link 4 98,640,925 98,734,606 RGD:14298760
G ZC3H3 zinc finger CCCH-type containing 3 JBrowse link 4 1,009,927 1,084,133 RGD:14298760
mRNA 3'-end processing by stem-loop binding and cleavage term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CPSF2 cleavage and polyadenylation specific factor 2 JBrowse link 7 113,659,903 113,690,524 RGD:14298760
G CPSF3 cleavage and polyadenylation specific factor 3 JBrowse link 3 126,868,519 126,905,699 RGD:14298760
G LOC100515533 oocyte-specific histone RNA stem-loop-binding protein 2 JBrowse link 2 140,324,554 140,330,245 RGD:14298760
G LSM11 LSM11, U7 small nuclear RNA associated JBrowse link 16 65,587,502 65,600,605 RGD:14298760
G SLBP stem-loop binding protein JBrowse link 8 802,940 818,161 RGD:14298760
G ZNF473 zinc finger protein 473 JBrowse link 6 55,009,252 55,023,142 RGD:14298760
mRNA 3'-splice site recognition term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LOC102162880 pre-mRNA-splicing factor ISY1 homolog JBrowse link 13 71,601,737 71,622,835 RGD:14298760
G SLU7 SLU7 homolog, splicing factor JBrowse link 16 63,118,426 63,145,655 RGD:14298760
mRNA 5'-splice site recognition term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PRPF39 pre-mRNA processing factor 39 JBrowse link 1 175,285,219 175,317,245 RGD:14298760
G PSIP1 PC4 and SFRS1 interacting protein 1 JBrowse link 1 207,173,264 207,216,437 RGD:14298760
G SFSWAP splicing factor SWAP JBrowse link 14 23,516,253 23,594,252 RGD:14298760
G SNRPC small nuclear ribonucleoprotein polypeptide C JBrowse link 7 30,708,243 30,723,480 RGD:14298760
G SRSF1 serine and arginine rich splicing factor 1 JBrowse link 12 34,278,363 34,282,164 RGD:14298760
G SRSF12 serine and arginine rich splicing factor 12 JBrowse link 1 57,145,078 57,166,138 RGD:14298760
mRNA alternative polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CPSF6 cleavage and polyadenylation specific factor 6 JBrowse link 5 33,525,668 33,559,941 RGD:14298760
G CPSF7 cleavage and polyadenylation specific factor 7 JBrowse link 2 10,087,581 10,112,929 RGD:14298760
G NUDT21 nudix hydrolase 21 JBrowse link 6 29,339,893 29,359,596 RGD:9068941
G VIRMA vir like m6A methyltransferase associated JBrowse link 4 42,162,424 42,236,310 RGD:14298760
G YTHDC1 YTH domain containing 1 JBrowse link 8 66,086,528 66,122,717 RGD:14298760
mRNA cis splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CACTIN cactin, spliceosome C complex subunit JBrowse link 2 75,049,250 75,065,990 RGD:14298760
G CWC15 CWC15 spliceosome associated protein homolog JBrowse link 9 27,035,501 27,047,280 RGD:14298760
G DCPS decapping enzyme, scavenger JBrowse link 9 53,400,750 53,437,161 RGD:14298760
G NCBP1 nuclear cap binding protein subunit 1 JBrowse link 1 239,492,573 239,543,925 RGD:14298760
G NCBP2 nuclear cap binding protein subunit 2 JBrowse link 13 133,177,209 133,192,935 RGD:14298760
G NCBP2L nuclear cap binding protein subunit 2 like RGD:14298760
G PRPF40A pre-mRNA processing factor 40 homolog A JBrowse link 15 60,388,582 60,440,478 RGD:14298760
G PRPF40B pre-mRNA processing factor 40 homolog B JBrowse link 5 15,570,140 15,593,140 RGD:14298760
G RBM19 RNA binding motif protein 19 JBrowse link 14 38,082,042 38,202,548 RGD:14298760
G RBM22 RNA binding motif protein 22 JBrowse link 2 151,663,182 151,672,337 RGD:14298760
G RBM4 RNA binding motif protein 4 JBrowse link 2 5,776,535 5,784,337 RGD:14298760
G RBM4B RNA binding motif protein 4B JBrowse link 2 5,745,364 5,758,177 RGD:14298760
G SART1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP JBrowse link 2 6,355,690 6,373,342 RGD:14298760
G SRSF1 serine and arginine rich splicing factor 1 JBrowse link 12 34,278,363 34,282,164 RGD:14298760
G SRSF10 serine and arginine rich splicing factor 10 JBrowse link 6 81,727,893 81,741,516 RGD:14298760
G SRSF12 serine and arginine rich splicing factor 12 JBrowse link 1 57,145,078 57,166,138 RGD:14298760
G SRSF2 serine and arginine rich splicing factor 2 JBrowse link 12 4,800,578 4,803,767 RGD:14298760
G SRSF3 serine and arginine rich splicing factor 3 JBrowse link 7 32,289,464 32,298,652 RGD:14298760
G SRSF5 serine and arginine rich splicing factor 5 JBrowse link 7 93,393,379 93,398,510 RGD:14298760
G SRSF6 serine and arginine rich splicing factor 6 JBrowse link 17 46,119,612 46,122,540 RGD:14298760
G SRSF7 serine and arginine rich splicing factor 7 JBrowse link 3 101,599,429 101,608,786 RGD:14298760
G SRSF9 serine and arginine rich splicing factor 9 JBrowse link 14 40,425,412 40,433,950 RGD:14298760
G TMOD1 tropomodulin 1 JBrowse link 1 239,375,150 239,468,387 RGD:14298760
G WBP11 WW domain binding protein 11 JBrowse link 5 57,749,948 57,766,788 RGD:14298760
G WBP4 WW domain binding protein 4 JBrowse link 11 25,735,209 25,772,555 RGD:14298760
mRNA cleavage involved in mRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ERN1 endoplasmic reticulum to nucleus signaling 1 JBrowse link 12 14,881,913 14,963,290 RGD:14298760
G ICAM2 intercellular adhesion molecule 2 JBrowse link 12 14,986,636 14,991,639 RGD:14298760
mRNA polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AHCYL1 adenosylhomocysteinase like 1 JBrowse link 4 110,092,976 110,132,826 RGD:14298760
G APLP1 amyloid beta precursor like protein 1 JBrowse link 6 45,285,698 45,295,355 RGD:9068941
G APP amyloid beta precursor protein JBrowse link 13 189,434,854 189,716,120 RGD:14298760
G CDC73 cell division cycle 73 JBrowse link 10 575,075 667,618 RGD:14298760
G CLP1 cleavage factor polyribonucleotide kinase subunit 1 JBrowse link 2 13,282,157 13,285,208 RGD:14298760
G CPSF1 cleavage and polyadenylation specific factor 1 JBrowse link 4 382,887 393,732 RGD:9068941
G CPSF2 cleavage and polyadenylation specific factor 2 JBrowse link 7 113,659,903 113,690,524 RGD:14298760
G CPSF3 cleavage and polyadenylation specific factor 3 JBrowse link 3 126,868,519 126,905,699 RGD:14298760
G CSTF2 cleavage stimulation factor subunit 2 JBrowse link X 82,508,739 82,540,861 RGD:14298760
G FIP1L1 factor interacting with PAPOLA and CPSF1 JBrowse link 8 40,157,263 40,235,084 RGD:14298760
G LEO1 LEO1 homolog, Paf1/RNA polymerase II complex component JBrowse link 1 119,804,992 119,842,343 RGD:14298760
G LOC100524945 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 pseudogene JBrowse link 9 5,971,366 5,971,953 RGD:14298760
G LOC100525973 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 pseudogene JBrowse link X 117,064,971 117,065,556 RGD:14298760
G MTPAP mitochondrial poly(A) polymerase JBrowse link 10 40,764,098 40,869,608 RGD:14298760
G NUDT21 nudix hydrolase 21 JBrowse link 6 29,339,893 29,359,596 RGD:14298760
G PABPC1L poly(A) binding protein cytoplasmic 1 like JBrowse link 17 47,321,259 47,351,905 RGD:14298760
G PAF1 PAF1 homolog, Paf1/RNA polymerase II complex component JBrowse link 6 48,046,487 48,053,631 RGD:14298760
G PAPOLA poly(A) polymerase alpha JBrowse link 7 117,676,083 117,740,348 RGD:14298760
G PAPOLG poly(A) polymerase gamma JBrowse link 3 80,986,395 81,025,369 RGD:14298760
G PCF11 PCF11 cleavage and polyadenylation factor subunit JBrowse link 9 17,297,867 17,324,721 RGD:14298760
G SCAF8 SR-related CTD associated factor 8 JBrowse link 1 11,888,108 12,122,435 RGD:14298760
G SSU72 SSU72 homolog, RNA polymerase II CTD phosphatase JBrowse link 6 63,728,318 63,757,460 RGD:14298760
G SYMPK symplekin JBrowse link 6 52,135,580 52,180,382 RGD:14298760
G TENT2 terminal nucleotidyltransferase 2 JBrowse link 2 88,328,250 88,388,242 RGD:14298760
G TENT4B terminal nucleotidyltransferase 4B JBrowse link 6 34,603,157 34,669,779 RGD:9068941
G TUT1 terminal uridylyl transferase 1, U6 snRNA-specific JBrowse link 2 9,148,563 9,161,918 RGD:14298760
G TUT4 terminal uridylyl transferase 4 JBrowse link 6 159,655,658 159,794,450 RGD:14298760
G TUT7 terminal uridylyl transferase 7 JBrowse link 10 28,995,564 29,061,179 RGD:14298760
mRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AKAP8L A-kinase anchoring protein 8 like JBrowse link 2 62,184,735 62,241,631 RGD:14298760
G ALKBH5 alkB homolog 5, RNA demethylase JBrowse link 12 60,507,662 60,530,239 RGD:14298760
G AURKAIP1 aurora kinase A interacting protein 1 JBrowse link 6 63,656,120 63,657,568 RGD:14298760
G CPSF6 cleavage and polyadenylation specific factor 6 JBrowse link 5 33,525,668 33,559,941 RGD:9068941
G CSTF3 cleavage stimulation factor subunit 3 JBrowse link 2 27,769,457 27,850,382 RGD:14298760
G ERN1 endoplasmic reticulum to nucleus signaling 1 JBrowse link 12 14,881,913 14,963,290 RGD:14298760
G ERN2 endoplasmic reticulum to nucleus signaling 2 JBrowse link 3 22,510,067 22,537,872 RGD:14298760
G GPATCH1 G-patch domain containing 1 JBrowse link 6 42,895,488 42,941,560 RGD:14298760
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 JBrowse link 18 46,205,164 46,215,861 RGD:14298760
G HNRNPL heterogeneous nuclear ribonucleoprotein L JBrowse link 6 47,643,561 47,655,856 RGD:14298760
G HNRNPLL heterogeneous nuclear ribonucleoprotein L like JBrowse link 3 101,753,330 101,795,356 RGD:14298760
G ICAM2 intercellular adhesion molecule 2 JBrowse link 12 14,986,636 14,991,639 RGD:14298760
G KHDRBS3 KH RNA binding domain containing, signal transduction associated 3 JBrowse link 4 6,289,577 6,446,494 RGD:9068941
G LOC100517800 histone H2A-Bbd type 2/3 JBrowse link X 125,277,575 125,280,752 RGD:9068941
G LOC110259351 heterogeneous nuclear ribonucleoproteins A2/B1 pseudogene JBrowse link 2 72,035,950 72,039,615 RGD:14298760
G LSM1 LSM1 homolog, mRNA degradation associated JBrowse link 15 48,348,653 48,360,004 RGD:14298760
G LSM5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 18 40,752,390 40,755,909 RGD:14298760
G METTL3 methyltransferase like 3 JBrowse link 7 77,661,945 77,679,459 RGD:9068941
G MTPAP mitochondrial poly(A) polymerase JBrowse link 10 40,764,098 40,869,608 RGD:14298760
G NUDT21 nudix hydrolase 21 JBrowse link 6 29,339,893 29,359,596 RGD:14298760
G PAN2 poly(A) specific ribonuclease subunit PAN2 JBrowse link 5 21,712,222 21,730,528 RGD:14298760
G PAN3 poly(A) specific ribonuclease subunit PAN3 JBrowse link 11 5,487,019 5,614,458 RGD:14298760
G PAPOLA poly(A) polymerase alpha JBrowse link 7 117,676,083 117,740,348 RGD:14298760
G PDCD11 programmed cell death 11 JBrowse link 14 114,327,583 114,382,002 RGD:14298760
G PHRF1 PHD and ring finger domains 1 JBrowse link 2 340,536 371,699 RGD:9068941
G PRKACA protein kinase cAMP-activated catalytic subunit alpha JBrowse link 2 65,074,876 65,095,564 RGD:14298760
G PRMT9 protein arginine methyltransferase 9 JBrowse link 8 81,076,709 81,113,545 RGD:14298760
G PTBP1 polypyrimidine tract binding protein 1 JBrowse link 2 77,551,562 77,563,153 RGD:14298760
G PTBP2 polypyrimidine tract binding protein 2 JBrowse link 4 120,961,211 121,041,876 RGD:14298760
G PTBP3 polypyrimidine tract binding protein 3 JBrowse link 1 252,986,716 253,093,059 RGD:14298760
G QKI QKI, KH domain containing RNA binding JBrowse link 1 4,732,575 4,883,386 RGD:9068941
G RBBP6 RB binding protein 6, ubiquitin ligase RGD:14298760
G RBFOX1 RNA binding fox-1 homolog 1 JBrowse link 3 34,938,703 37,209,772 RGD:14298760
G RBFOX2 RNA binding fox-1 homolog 2 JBrowse link 5 11,633,523 11,905,325 RGD:14298760
G RBFOX3 RNA binding fox-1 homolog 3 JBrowse link 12 3,116,769 3,138,846 RGD:14298760
G RBM23 RNA binding motif protein 23 JBrowse link 7 76,120,725 76,132,148 RGD:14298760
G RBM25 RNA binding motif protein 25 JBrowse link 7 96,406,650 96,468,172 RGD:14298760
G RBM26 RNA binding motif protein 26 JBrowse link 11 51,337,388 51,421,746 RGD:14298760
G RBM27 RNA binding motif protein 27 JBrowse link 2 147,569,762 147,644,243 RGD:14298760
G RBM39 RNA binding motif protein 39 JBrowse link 17 39,032,141 39,064,803 RGD:14298760
G RBM8A RNA binding motif protein 8A JBrowse link 4 99,408,422 99,411,964 RGD:14298760
G RNASEL ribonuclease L JBrowse link 9 123,895,045 123,910,386 RGD:14298760
G SCAF1 SR-related CTD associated factor 1 JBrowse link 6 54,685,337 54,700,400 RGD:9068941
G SCAF4 SR-related CTD associated factor 4 JBrowse link 13 195,335,178 195,396,246 RGD:9068941
G SCAF8 SR-related CTD associated factor 8 JBrowse link 1 11,888,108 12,122,435 RGD:9068941
G SF3A1 splicing factor 3a subunit 1 JBrowse link 14 47,312,460 47,335,448 RGD:9068941
G SF3A2 splicing factor 3a subunit 2 JBrowse link 2 76,404,882 76,414,901 RGD:9068941
G SF3A3 splicing factor 3a subunit 3 JBrowse link 6 93,951,599 93,976,324 RGD:9068941
G SMN1 survival of motor neuron 1, telomeric JBrowse link 16 47,738,776 47,777,381 RGD:14298760
G SMNDC1 survival motor neuron domain containing 1 JBrowse link 14 120,726,077 120,739,673 RGD:14298760
G SNRPD2 small nuclear ribonucleoprotein D2 polypeptide JBrowse link 6 52,035,900 52,042,474 RGD:14298760
G SON SON DNA and RNA binding protein JBrowse link 13 197,162,075 197,193,417 RGD:14298760
G SRRM1 serine and arginine repetitive matrix 1 JBrowse link 6 82,309,192 82,348,076 RGD:14298760
G SRRM4 serine/arginine repetitive matrix 4 JBrowse link 14 33,653,542 33,818,859 RGD:14298760
G SRRT serrate, RNA effector molecule JBrowse link 3 8,717,782 8,731,204 RGD:14298760
G SUPT4H1 SPT4 homolog, DSIF elongation factor subunit JBrowse link 12 34,622,775 34,629,681 RGD:14298760
G TCERG1 transcription elongation regulator 1 JBrowse link 2 147,789,225 147,852,461 RGD:9068941
G TENT2 terminal nucleotidyltransferase 2 JBrowse link 2 88,328,250 88,388,242 RGD:14298760
G THOC2 THO complex 2 JBrowse link X 101,170,969 101,284,623 RGD:14298760
G THOC7 THO complex 7 JBrowse link 13 45,335,160 45,356,233 RGD:14298760
G TUT4 terminal uridylyl transferase 4 JBrowse link 6 159,655,658 159,794,450 RGD:14298760
G TUT7 terminal uridylyl transferase 7 JBrowse link 10 28,995,564 29,061,179 RGD:14298760
G U2AF2 U2 small nuclear RNA auxiliary factor 2 JBrowse link 6 59,773,205 59,789,403 RGD:14298760
G XRN2 5'-3' exoribonuclease 2 JBrowse link 17 29,107,641 29,193,500 RGD:14298760
mRNA splice site selection term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CELF1 CUGBP Elav-like family member 1 JBrowse link 2 15,066,518 15,161,478 RGD:14298760
G CELF2 CUGBP Elav-like family member 2 JBrowse link 10 60,504,925 60,867,631 RGD:14298760
G CELF3 CUGBP Elav-like family member 3 JBrowse link 4 97,513,563 97,535,426 RGD:14298760
G CELF4 CUGBP Elav-like family member 4 JBrowse link 6 121,065,604 121,381,052 RGD:14298760
G CELF5 CUGBP Elav-like family member 5 JBrowse link 2 75,314,808 75,364,189 RGD:14298760
G CELF6 CUGBP Elav-like family member 6 JBrowse link 7 60,931,100 60,960,929 RGD:14298760
G KHDC4 KH domain containing 4, pre-mRNA splicing factor JBrowse link 4 94,098,211 94,116,662 RGD:14298760
G LOC102162486 putative RNA-binding protein Luc7-like 2 JBrowse link 18 10,268,077 10,333,227 RGD:14298760
G LUC7L LUC7 like JBrowse link 3 41,442,127 41,473,115 RGD:14298760
G LUC7L3 LUC7 like 3 pre-mRNA splicing factor JBrowse link 12 27,004,894 27,032,156 RGD:14298760
G MBNL1 muscleblind like splicing regulator 1 JBrowse link 13 92,491,778 92,696,235 RGD:9068941
G PSMC3 proteasome 26S subunit, ATPase 3 JBrowse link 2 15,185,482 15,191,189 RGD:14298760
G PTBP2 polypyrimidine tract binding protein 2 JBrowse link 4 120,961,211 121,041,876 RGD:14298760
G PUF60 poly(U) binding splicing factor 60 JBrowse link 4 812,137 824,321 RGD:14298760
G RAPSN receptor associated protein of the synapse JBrowse link 2 15,166,968 15,181,011 RGD:14298760
G RBMX RNA binding motif protein X-linked JBrowse link X 111,965,859 111,974,544 RGD:9068941
G SETX senataxin JBrowse link 1 272,093,449 272,170,857 RGD:14298760
G SRSF10 serine and arginine rich splicing factor 10 JBrowse link 6 81,727,893 81,741,516 RGD:14298760
G SRSF6 serine and arginine rich splicing factor 6 JBrowse link 17 46,119,612 46,122,540 RGD:14298760
G YTHDC1 YTH domain containing 1 JBrowse link 8 66,086,528 66,122,717 RGD:9068941
mRNA splicing, via endonucleolytic cleavage and ligation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ERN1 endoplasmic reticulum to nucleus signaling 1 JBrowse link 12 14,881,913 14,963,290 RGD:14298760
G ICAM2 intercellular adhesion molecule 2 JBrowse link 12 14,986,636 14,991,639 RGD:14298760
mRNA splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AQR aquarius intron-binding spliceosomal factor JBrowse link 1 136,135,854 136,235,538 RGD:14298760
G BCAS2 BCAS2 pre-mRNA processing factor JBrowse link 4 105,992,558 106,003,160 RGD:9068941
G BUD13 BUD13 homolog JBrowse link 9 44,120,830 44,165,410 RGD:14298760
G BUD31 BUD31 homolog JBrowse link 3 6,355,249 6,361,211 RGD:14298760
G CASC3 CASC3 exon junction complex subunit JBrowse link 12 22,199,227 22,221,573 RGD:14298760
G CDC40 cell division cycle 40 JBrowse link 1 76,179,169 76,234,690 RGD:14298760
G CDC5L cell division cycle 5 like JBrowse link 7 39,384,397 39,427,729 RGD:14298760
G CEP97 centrosomal protein 97 JBrowse link 13 157,356,248 157,388,425 RGD:14298760
G CRNKL1 crooked neck pre-mRNA splicing factor 1 JBrowse link 17 28,079,541 28,111,871 RGD:14298760
G CWC15 CWC15 spliceosome associated protein homolog JBrowse link 9 27,035,501 27,047,280 RGD:14298760
G CWC22 CWC22 spliceosome associated protein homolog JBrowse link 15 85,541,158 85,605,837 RGD:14298760
G CWC25 CWC25 spliceosome associated protein homolog JBrowse link 12 23,298,050 23,315,445 RGD:14298760
G CWF19L1 CWF19 like cell cycle control factor 1 JBrowse link 14 111,354,597 111,388,911 RGD:14298760
G DBR1 debranching RNA lariats 1 JBrowse link 13 78,958,301 78,970,250 RGD:14298760
G DDX39A DExD-box helicase 39A JBrowse link 2 64,836,040 64,844,996 RGD:14298760
G DDX39B DExD-box helicase 39B JBrowse link 7 23,658,089 23,669,095 RGD:14298760
G DDX41 DEAD-box helicase 41 JBrowse link 2 80,433,065 80,445,484 RGD:14298760
G DDX46 DEAD-box helicase 46 JBrowse link 2 136,972,504 137,030,186 RGD:14298760
G DHX16 DEAH-box helicase 16 JBrowse link 7 23,190,645 23,208,071 RGD:14298760
G DHX38 DEAH-box helicase 38 JBrowse link 6 14,998,091 15,016,380 RGD:14298760
G DHX8 DEAH-box helicase 8 JBrowse link 12 19,549,280 19,582,090 RGD:9068941
G DOK3 docking protein 3 JBrowse link 2 80,440,774 80,445,484 RGD:14298760
G EFTUD2 elongation factor Tu GTP binding domain containing 2 JBrowse link 12 18,474,367 18,514,993 RGD:14298760
G EIF4A3 eukaryotic translation initiation factor 4A3 JBrowse link 12 2,285,679 2,311,750 RGD:9068941
G GPKOW G-patch domain and KOW motifs JBrowse link X 43,177,264 43,192,021 RGD:14298760
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 JBrowse link 18 46,205,164 46,215,861 RGD:14298760
G HNRNPC heterogeneous nuclear ribonucleoprotein C JBrowse link 7 77,921,098 77,978,550 RGD:9068941
G HNRNPM heterogeneous nuclear ribonucleoprotein M JBrowse link 2 70,813,745 70,858,903 RGD:14298760
G HTATSF1 HIV-1 Tat specific factor 1 JBrowse link X 111,624,303 111,643,566 RGD:14298760
G IK IK cytokine JBrowse link 2 142,361,134 142,376,335 RGD:14298760
G LOC100155098 NHP2-like protein 1 pseudogene JBrowse link X 76,457,649 76,458,203 RGD:14298760
G LOC100526209 ferredoxin-2, mitochondrial JBrowse link 2 69,121,300 69,129,643 RGD:14298760
G LOC102162880 pre-mRNA-splicing factor ISY1 homolog JBrowse link 13 71,601,737 71,622,835 RGD:9068941
G LOC396706 U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 JBrowse link Y 9,174,391 9,227,673 RGD:14298760
G LSM2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 7 23,900,385 23,908,523 RGD:14298760
G LSM3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 13 70,339,685 70,349,802 RGD:14298760
G LSM4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 2 59,499,560 59,513,258 RGD:14298760
G LSM5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 18 40,752,390 40,755,909 RGD:14298760
G LSM6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 8 82,409,170 82,428,501 RGD:14298760
G LSM7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 2 76,247,010 76,251,824 RGD:14298760
G LSM8 LSM8 homolog, U6 small nuclear RNA associated JBrowse link 18 28,124,116 28,130,375 RGD:14298760
G MAGOHB mago homolog B, exon junction complex subunit JBrowse link 5 61,425,699 61,434,026 RGD:14298760
G METTL14 methyltransferase like 14 JBrowse link 8 105,019,539 105,053,603 RGD:14298760
G METTL3 methyltransferase like 3 JBrowse link 7 77,661,945 77,679,459 RGD:14298760
RGD:9068941
G MFAP1 microfibril associated protein 1 JBrowse link 1 127,741,407 127,756,168 RGD:14298760
G NCBP1 nuclear cap binding protein subunit 1 JBrowse link 1 239,492,573 239,543,925 RGD:14298760
G NCBP2 nuclear cap binding protein subunit 2 JBrowse link 13 133,177,209 133,192,935 RGD:14298760
G NCBP2L nuclear cap binding protein subunit 2 like RGD:14298760
G NONO non-POU domain containing octamer binding RGD:14298760
G NOVA1 NOVA alternative splicing regulator 1 JBrowse link 7 72,805,138 72,961,257 RGD:14298760
G NOVA2 NOVA alternative splicing regulator 2 JBrowse link 6 52,248,587 52,278,519 RGD:14298760
G PHF5A PHD finger protein 5A JBrowse link 5 7,071,145 7,080,046 RGD:14298760
G PLRG1 pleiotropic regulator 1 JBrowse link 8 74,614,925 74,631,072 RGD:9068941
G PPIE peptidylprolyl isomerase E JBrowse link 6 95,548,582 95,566,470 RGD:9068941
G PPIL1 peptidylprolyl isomerase like 1 JBrowse link 7 32,522,736 32,547,874 RGD:14298760
G PRPF19 pre-mRNA processing factor 19 JBrowse link 2 10,851,779 10,860,315 RGD:14298760
G PRPF3 pre-mRNA processing factor 3 JBrowse link 4 98,745,263 98,771,724 RGD:14298760
G PRPF31 pre-mRNA processing factor 31 JBrowse link 6 55,995,087 56,011,507 RGD:14298760
G PRPF38A pre-mRNA processing factor 38A JBrowse link 6 159,798,692 159,819,252 RGD:14298760
G PRPF38B pre-mRNA processing factor 38B JBrowse link 4 111,338,988 111,347,505 RGD:14298760
G PRPF4 pre-mRNA processing factor 4 JBrowse link 1 253,906,258 253,925,683 RGD:14298760
G PRPF40A pre-mRNA processing factor 40 homolog A JBrowse link 15 60,388,582 60,440,478 RGD:14298760
G PRPF40B pre-mRNA processing factor 40 homolog B JBrowse link 5 15,570,140 15,593,140 RGD:14298760
G PRPF6 pre-mRNA processing factor 6 JBrowse link 17 62,815,509 62,857,795 RGD:14298760
G PRPF8 pre-mRNA processing factor 8 JBrowse link 12 47,861,041 47,895,286 RGD:9068941
G PSPC1 paraspeckle component 1 JBrowse link 11 477,010 572,090 RGD:14298760
G PYGM glycogen phosphorylase, muscle associated JBrowse link 2 7,409,330 7,421,256 RGD:14298760
G RAVER2 ribonucleoprotein, PTB binding 2 JBrowse link 6 147,566,930 147,722,428 RGD:14298760
G RBM10 RNA binding motif protein 10 JBrowse link X 41,773,232 41,803,656 RGD:14298760
G RBM15 RNA binding motif protein 15 JBrowse link 4 109,767,464 109,791,555 RGD:14298760
G RBM15B RNA binding motif protein 15B JBrowse link 13 33,664,387 33,671,047 RGD:14298760
G RBM41 RNA binding motif protein 41 JBrowse link X 87,512,887 87,575,118 RGD:14298760
G RBM5 RNA binding motif protein 5 JBrowse link 13 32,579,780 32,612,716 RGD:14298760
G RBM6 RNA binding motif protein 6 JBrowse link 13 32,444,944 32,569,818 RGD:14298760
G RBM8A RNA binding motif protein 8A JBrowse link 4 99,408,422 99,411,964 RGD:14298760
G RBMX2 RNA binding motif protein X-linked 2 JBrowse link X 106,880,912 106,890,391 RGD:14298760
G RNF113A ring finger protein 113A JBrowse link X 98,218,689 98,219,931 RGD:9068941
G RNPS1 RNA binding protein with serine rich domain 1 JBrowse link 3 39,739,058 39,749,600 RGD:14298760
G RSRC1 arginine and serine rich coiled-coil 1 JBrowse link 13 97,893,815 98,338,108 RGD:9068941
G SART1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP JBrowse link 2 6,355,690 6,373,342 RGD:14298760
G SART3 spliceosome associated factor 3, U4/U6 recycling protein JBrowse link 14 42,223,752 42,259,992 RGD:14298760
G SF3A1 splicing factor 3a subunit 1 JBrowse link 14 47,312,460 47,335,448 RGD:9068941
G SF3A2 splicing factor 3a subunit 2 JBrowse link 2 76,404,882 76,414,901 RGD:9068941
G SF3A3 splicing factor 3a subunit 3 JBrowse link 6 93,951,599 93,976,324 RGD:14298760
G SF3B1 splicing factor 3b subunit 1 JBrowse link 15 101,274,968 101,338,018 RGD:9068941
G SF3B2 splicing factor 3b subunit 2 JBrowse link 2 6,279,039 6,295,550 RGD:14298760
G SF3B3 splicing factor 3b subunit 3 JBrowse link 6 13,524,519 13,578,681 RGD:14298760
G SF3B4 splicing factor 3b subunit 4 JBrowse link 4 99,123,564 99,129,218 RGD:14298760
G SF3B5 splicing factor 3b subunit 5 JBrowse link 1 21,231,264 21,232,014 RGD:9068941
G SF3B6 splicing factor 3b subunit 6 JBrowse link 3 114,605,863 114,618,123 RGD:14298760
G SFPQ splicing factor proline and glutamine rich JBrowse link 6 91,391,552 91,408,236 RGD:14298760
G SLU7 SLU7 homolog, splicing factor JBrowse link 16 63,118,426 63,145,655 RGD:14298760
G SMU1 SMU1 DNA replication regulator and spliceosomal factor JBrowse link 10 33,399,383 33,426,313 RGD:14298760
G SNIP1 Smad nuclear interacting protein 1 JBrowse link 6 93,597,050 93,612,169 RGD:14298760
G SNRNP200 small nuclear ribonucleoprotein U5 subunit 200 JBrowse link 3 46,929,066 46,960,420 RGD:14298760
G SNRNP25 small nuclear ribonucleoprotein U11/U12 subunit 25 JBrowse link 3 41,568,030 41,571,728 RGD:14298760
G SNRNP35 small nuclear ribonucleoprotein U11/U12 subunit 35 JBrowse link 14 29,471,674 29,477,051 RGD:14298760
G SNRNP70 small nuclear ribonucleoprotein U1 subunit 70 JBrowse link 6 54,288,354 54,304,272 RGD:14298760
G SNRPA small nuclear ribonucleoprotein polypeptide A JBrowse link 6 48,971,868 48,982,369 RGD:14298760
G SNRPA1 small nuclear ribonucleoprotein polypeptide A' JBrowse link 1 145,707,393 145,719,287 RGD:14298760
G SNRPB small nuclear ribonucleoprotein polypeptides B and B1 JBrowse link 17 33,072,104 33,094,847 RGD:9068941
G SNRPB2 small nuclear ribonucleoprotein polypeptide B2 JBrowse link 17 25,363,107 25,373,289 RGD:14298760
G SNRPC small nuclear ribonucleoprotein polypeptide C JBrowse link 7 30,708,243 30,723,480 RGD:9068941
G SNRPD1 small nuclear ribonucleoprotein D1 polypeptide JBrowse link 6 106,798,201 106,810,178 RGD:9068941
G SNRPD2 small nuclear ribonucleoprotein D2 polypeptide JBrowse link 6 52,035,900 52,042,474 RGD:14298760
G SNRPD3 small nuclear ribonucleoprotein D3 polypeptide JBrowse link 14 49,585,177 49,598,015 RGD:9068941
G SNRPE small nuclear ribonucleoprotein polypeptide E JBrowse link 9 64,560,544 64,567,007 RGD:14298760
G SNRPF small nuclear ribonucleoprotein polypeptide F JBrowse link 5 87,614,934 87,622,863 RGD:14298760
G SNRPG small nuclear ribonucleoprotein polypeptide G JBrowse link 3 72,198,722 72,208,053 RGD:14298760
G SNRPN small nuclear ribonucleoprotein polypeptide N RGD:14298760
G SNU13 small nuclear ribonucleoprotein 13 JBrowse link 5 6,891,014 6,900,026 RGD:14298760
G SNW1 SNW domain containing 1 JBrowse link 7 100,718,298 100,749,414 RGD:14298760
G SPEN spen family transcriptional repressor JBrowse link 6 75,015,565 75,107,468 RGD:14298760
G SRRM2 serine/arginine repetitive matrix 2 JBrowse link 3 39,275,274 39,293,741 RGD:14298760
G SRSF10 serine and arginine rich splicing factor 10 JBrowse link 6 81,727,893 81,741,516 RGD:9068941
G STXBP3 syntaxin binding protein 3 JBrowse link 4 111,234,154 111,294,067 RGD:14298760
G SYF2 SYF2 pre-mRNA splicing factor JBrowse link 6 82,836,894 82,843,484 RGD:14298760
G TMOD1 tropomodulin 1 JBrowse link 1 239,375,150 239,468,387 RGD:14298760
G TRA2A transformer 2 alpha homolog JBrowse link 9 92,299,171 92,323,789 RGD:14298760
G TRA2B transformer 2 beta homolog JBrowse link 13 123,760,008 123,780,919 RGD:14298760
G TXNL4A thioredoxin like 4A JBrowse link 6 127,975,164 127,991,112 RGD:14298760
G TXNL4B thioredoxin like 4B JBrowse link 6 14,985,063 14,998,077 RGD:14298760
G U2AF1 U2 small nuclear RNA auxiliary factor 1 JBrowse link 13 206,244,772 206,257,697 RGD:14298760
G U2AF1L4 U2 small nuclear RNA auxiliary factor 1 like 4 JBrowse link 6 45,167,556 45,172,382 RGD:14298760
G U2AF2 U2 small nuclear RNA auxiliary factor 2 JBrowse link 6 59,773,205 59,789,403 RGD:14298760
G UBL5 ubiquitin like 5 JBrowse link 2 68,702,478 68,708,012 RGD:14298760
G USP39 ubiquitin specific peptidase 39 JBrowse link 3 59,121,381 59,156,597 RGD:9068941
G USP49 ubiquitin specific peptidase 49 JBrowse link 7 36,978,291 37,054,027 RGD:14298760
G WBP4 WW domain binding protein 4 JBrowse link 11 25,735,209 25,772,555 RGD:9068941
G WDR83 WD repeat domain 83 JBrowse link 2 66,307,652 66,312,839 RGD:14298760
G XAB2 XPA binding protein 2 JBrowse link 2 71,521,034 71,530,468 RGD:14298760
G YTHDC1 YTH domain containing 1 JBrowse link 8 66,086,528 66,122,717 RGD:14298760
G ZBTB17 zinc finger and BTB domain containing 17 JBrowse link 6 75,108,728 75,144,103 RGD:14298760
G ZCRB1 zinc finger CCHC-type and RNA binding motif containing 1 JBrowse link 5 73,538,982 73,556,240 RGD:14298760
G ZMAT2 zinc finger matrin-type 2 JBrowse link 2 142,410,970 142,417,012 RGD:14298760
G ZRSR2 zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2 JBrowse link X 12,336,635 12,365,071 RGD:14298760
ncRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ZCCHC8 zinc finger CCHC-type containing 8 JBrowse link 14 30,264,397 30,288,068 RGD:9068941
negative regulation of mRNA polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CCNT1 cyclin T1 JBrowse link 5 14,768,423 14,808,424 RGD:14298760
G CDK9 cyclin dependent kinase 9 JBrowse link 1 268,277,083 268,280,493 RGD:9068941
G CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component JBrowse link 2 48,700,629 48,729,480 RGD:14298760
G NELFE negative elongation factor complex member E JBrowse link 7 24,040,525 24,046,932 RGD:14298760
G RNF20 ring finger protein 20 JBrowse link 1 243,225,711 243,254,465 RGD:14298760
G RNF40 ring finger protein 40 JBrowse link 3 17,622,309 17,635,990 RGD:9068941
G SUPT5H SPT5 homolog, DSIF elongation factor subunit JBrowse link 6 48,095,001 48,125,120 RGD:9068941
G ZC3H14 zinc finger CCCH-type containing 14 JBrowse link 7 110,463,459 110,513,231 RGD:14298760
negative regulation of mRNA splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACIN1 apoptotic chromatin condensation inducer 1 JBrowse link 7 75,951,203 75,989,234 RGD:9068941
G C1QBP complement C1q binding protein JBrowse link 12 51,548,361 51,553,076 RGD:14298760
G CELF4 CUGBP Elav-like family member 4 JBrowse link 6 121,065,604 121,381,052 RGD:14298760
G DYRK1A dual specificity tyrosine phosphorylation regulated kinase 1A JBrowse link 13 201,008,506 201,159,946 RGD:14298760
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 JBrowse link 18 46,205,164 46,215,861 RGD:9068941
G HNRNPK heterogeneous nuclear ribonucleoprotein K JBrowse link 10 30,975,639 30,987,955 RGD:9068941
G HNRNPL heterogeneous nuclear ribonucleoprotein L JBrowse link 6 47,643,561 47,655,856 RGD:9068941
G NPM1 nucleophosmin 1 JBrowse link 16 52,767,263 52,781,862 RGD:9068941
G PCBP4 poly(rC) binding protein 4 JBrowse link 13 34,090,015 34,099,959 RGD:14298760
G PTBP1 polypyrimidine tract binding protein 1 JBrowse link 2 77,551,562 77,563,153 RGD:14298760
G PTBP3 polypyrimidine tract binding protein 3 JBrowse link 1 252,986,716 253,093,059 RGD:14298760
G RBM10 RNA binding motif protein 10 JBrowse link X 41,773,232 41,803,656 RGD:14298760
G RBM42 RNA binding motif protein 42 JBrowse link 6 45,074,527 45,083,124 RGD:14298760
G RNPS1 RNA binding protein with serine rich domain 1 JBrowse link 3 39,739,058 39,749,600 RGD:14298760
G SAP18 Sin3A associated protein 18 JBrowse link 11 1,290,195 1,298,990 RGD:14298760
G SFSWAP splicing factor SWAP JBrowse link 14 23,516,253 23,594,252 RGD:9068941
G SRSF10 serine and arginine rich splicing factor 10 JBrowse link 6 81,727,893 81,741,516 RGD:14298760
G SRSF4 serine and arginine rich splicing factor 4 JBrowse link 6 86,064,776 86,092,769 RGD:14298760
G SRSF6 serine and arginine rich splicing factor 6 JBrowse link 17 46,119,612 46,122,540 RGD:9068941
G SRSF7 serine and arginine rich splicing factor 7 JBrowse link 3 101,599,429 101,608,786 RGD:14298760
G SRSF9 serine and arginine rich splicing factor 9 JBrowse link 14 40,425,412 40,433,950 RGD:14298760
G TRA2B transformer 2 beta homolog JBrowse link 13 123,760,008 123,780,919 RGD:9068941
G U2AF2 U2 small nuclear RNA auxiliary factor 2 JBrowse link 6 59,773,205 59,789,403 RGD:14298760
negative regulation of pre-miRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BCDIN3D BCDIN3 domain containing RNA methyltransferase JBrowse link 5 15,755,307 15,761,645 RGD:14298760
G LIN28B lin-28 homolog B JBrowse link 1 71,173,291 71,296,131 RGD:9068941
negative regulation of primary miRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G IL6 interleukin 6 JBrowse link 9 91,506,421 91,510,830 RGD:9068941
G LIN28B lin-28 homolog B JBrowse link 1 71,173,291 71,296,131 RGD:9068941
G MECP2 methyl-CpG binding protein 2 JBrowse link X 124,735,523 124,789,063 RGD:9068941
G STAT3 signal transducer and activator of transcription 3 JBrowse link 12 20,407,316 20,471,091 RGD:9068941
negative regulation of production of miRNAs involved in gene silencing by miRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ESR1 estrogen receptor 1 JBrowse link 1 14,217,032 14,604,906 RGD:14298760
G NCOR1 nuclear receptor corepressor 1 JBrowse link 12 59,256,868 59,392,564 RGD:9068941
G NCOR2 nuclear receptor corepressor 2 JBrowse link 14 28,642,774 28,819,404 RGD:14298760
G PPP3CA protein phosphatase 3 catalytic subunit alpha JBrowse link 8 119,429,181 119,754,615 RGD:14298760
G TGFB1 transforming growth factor beta 1 JBrowse link 6 49,332,169 49,348,642 RGD:14298760
G TNF tumor necrosis factor JBrowse link 7 23,699,635 23,702,393 RGD:14298760
G TP53 tumor protein p53 JBrowse link 12 52,939,643 52,953,786 RGD:14298760
G ZC3H10 zinc finger CCCH-type containing 10 JBrowse link 5 21,506,510 21,513,972 RGD:14298760
G ZC3H12A zinc finger CCCH-type containing 12A JBrowse link 6 93,541,334 93,551,200 RGD:14298760
G ZMPSTE24 zinc metallopeptidase STE24 JBrowse link 6 96,008,307 96,057,131 RGD:14298760
negative regulation of production of siRNA involved in RNA interference term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TERT telomerase reverse transcriptase JBrowse link 16 79,258,591 79,276,421 RGD:14298760
negative regulation of RNA splicing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AKT2 AKT serine/threonine kinase 2 JBrowse link 6 48,555,785 48,620,472 RGD:9068941
G PTBP1 polypyrimidine tract binding protein 1 JBrowse link 2 77,551,562 77,563,153 RGD:9068941
G PTBP2 polypyrimidine tract binding protein 2 JBrowse link 4 120,961,211 121,041,876 RGD:14298760
G PTBP3 polypyrimidine tract binding protein 3 JBrowse link 1 252,986,716 253,093,059 RGD:9068941
G RPS13 ribosomal protein S13 JBrowse link 2 42,030,585 42,033,382 RGD:14298760
G RPS26 ribosomal protein S26 JBrowse link 5 21,431,656 21,433,691 RGD:9068941
G TMBIM6 transmembrane BAX inhibitor motif containing 6 JBrowse link 5 15,674,028 15,692,944 RGD:14298760
negative regulation of rRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G KAT2B lysine acetyltransferase 2B JBrowse link 13 6,985,151 7,099,771 RGD:14298760
G SHQ1 SHQ1, H/ACA ribonucleoprotein assembly factor JBrowse link 13 54,073,012 54,180,759 RGD:14298760
polyadenylation-dependent snoRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G EXOSC10 exosome component 10 JBrowse link 6 71,258,988 71,282,802 RGD:14298760
G EXOSC2 exosome component 2 JBrowse link 1 270,748,534 270,757,717 RGD:14298760
G EXOSC3 exosome component 3 JBrowse link 1 238,536,341 238,541,756 RGD:14298760
G EXOSC4 exosome component 4 JBrowse link 4 618,993 621,336 RGD:14298760
G EXOSC5 exosome component 5 JBrowse link 6 49,373,378 49,381,875 RGD:14298760
G EXOSC6 exosome component 6 JBrowse link 6 13,295,591 13,296,942 RGD:14298760
G PARN poly(A)-specific ribonuclease JBrowse link 3 28,616,808 28,802,506 RGD:9068941
positive regulation of mRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CCNB1 cyclin B1 JBrowse link 16 47,338,239 47,348,385 RGD:9068941
G CDC73 cell division cycle 73 JBrowse link 10 575,075 667,618 RGD:14298760
G DHX36 DEAH-box helicase 36 JBrowse link 13 94,298,790 94,350,333 RGD:14298760
G LEO1 LEO1 homolog, Paf1/RNA polymerase II complex component JBrowse link 1 119,804,992 119,842,343 RGD:14298760
G NCBP1 nuclear cap binding protein subunit 1 JBrowse link 1 239,492,573 239,543,925 RGD:9068941
G NCBP2 nuclear cap binding protein subunit 2 JBrowse link 13 133,177,209 133,192,935 RGD:14298760
G PAF1 PAF1 homolog, Paf1/RNA polymerase II complex component JBrowse link 6 48,046,487 48,053,631 RGD:14298760
positive regulation of mRNA polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CPEB1 cytoplasmic polyadenylation element binding protein 1 JBrowse link 7 52,329,054 52,382,408 RGD:9068941
G CPEB3 cytoplasmic polyadenylation element binding protein 3 JBrowse link 14 103,675,164 103,871,245 RGD:9068941
G HSF1 heat shock transcription factor 1 JBrowse link 4 463,531 486,483 RGD:14298760
G NUDT21 nudix hydrolase 21 JBrowse link 6 29,339,893 29,359,596 RGD:9068941
positive regulation of mRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ADARB1 adenosine deaminase RNA specific B1 JBrowse link 13 207,746,915 207,791,809 RGD:9068941
positive regulation of mRNA splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CELF3 CUGBP Elav-like family member 3 JBrowse link 4 97,513,563 97,535,426 RGD:14298760
G CELF4 CUGBP Elav-like family member 4 JBrowse link 6 121,065,604 121,381,052 RGD:14298760
G CIRBP cold inducible RNA binding protein JBrowse link 2 77,185,295 77,194,373 RGD:14298760
G DAZAP1 DAZ associated protein 1 JBrowse link 2 77,048,890 77,070,565 RGD:14298760
G EIF4A3 eukaryotic translation initiation factor 4A3 JBrowse link 12 2,285,679 2,311,750 RGD:9068941
G HMX2 H6 family homeobox 2 JBrowse link 14 132,691,108 132,699,477 RGD:14298760
G HSPA8 heat shock protein family A (Hsp70) member 8 JBrowse link 9 49,982,278 49,986,760 RGD:14298760
G LMNTD2 lamin tail domain containing 2 JBrowse link 2 323,642 329,782 RGD:9068941
G LOC110257929 RNA-binding motif protein, X chromosome-like JBrowse link Y 41,171,519 41,182,903 RGD:14298760
G NCBP1 nuclear cap binding protein subunit 1 JBrowse link 1 239,492,573 239,543,925 RGD:9068941
G NCL nucleolin JBrowse link 15 132,163,453 132,174,214 RGD:14298760
G NUP98 nucleoporin 98 and 96 precursor JBrowse link 9 6,319,616 6,419,652 RGD:14298760
G OBI1 ORC ubiquitin ligase 1 JBrowse link 11 50,741,893 50,786,824 RGD:9068941
G PRDX6 peroxiredoxin 6 JBrowse link 9 115,857,629 115,868,898 RGD:14298760
G PRPF19 pre-mRNA processing factor 19 JBrowse link 2 10,851,779 10,860,315 RGD:14298760
G RBM3 RNA binding motif protein 3 JBrowse link X 42,704,019 42,707,587 RGD:14298760
G RBMX RNA binding motif protein X-linked JBrowse link X 111,965,859 111,974,544 RGD:14298760
G SF3B4 splicing factor 3b subunit 4 JBrowse link 4 99,123,564 99,129,218 RGD:14298760
G SLC39A5 solute carrier family 39 member 5 JBrowse link 5 21,631,874 21,640,476 RGD:14298760
G SNRNP70 small nuclear ribonucleoprotein U1 subunit 70 JBrowse link 6 54,288,354 54,304,272 RGD:14298760
G SNW1 SNW domain containing 1 JBrowse link 7 100,718,298 100,749,414 RGD:9068941
G THRAP3 thyroid hormone receptor associated protein 3 JBrowse link 6 92,350,021 92,412,335 RGD:14298760
G TRA2A transformer 2 alpha homolog JBrowse link 9 92,299,171 92,323,789 RGD:14298760
G TRA2B transformer 2 beta homolog JBrowse link 13 123,760,008 123,780,919 RGD:14298760
G ZFP64 ZFP64 zinc finger protein JBrowse link 17 53,364,021 53,459,587 RGD:9068941
positive regulation of production of miRNAs involved in gene silencing by miRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BMP4 bone morphogenetic protein 4 JBrowse link 1 183,415,989 183,422,888 RGD:14298760
G DDX5 DEAD-box helicase 5 JBrowse link 12 14,571,712 14,580,740 RGD:14298760
G EGFR epidermal growth factor receptor JBrowse link 9 139,302,410 139,474,632 RGD:14298760
G IL6 interleukin 6 JBrowse link 9 91,506,421 91,510,830 RGD:14298760
G LIN28A lin-28 homolog A JBrowse link 6 83,806,178 83,818,550 RGD:14298760
G MAP2K1 mitogen-activated protein kinase kinase 1 JBrowse link 1 164,381,892 164,469,313 RGD:14298760
G MAP2K2 mitogen-activated protein kinase kinase 2 JBrowse link 2 74,626,739 74,651,352 RGD:9068941
G MYOCD myocardin JBrowse link 12 56,931,628 57,029,258 RGD:9068941
G NR2F1 nuclear receptor subfamily 2 group F member 1 JBrowse link 2 100,447,661 100,457,510 RGD:9068941
G RIPK1 receptor interacting serine/threonine kinase 1 JBrowse link 7 1,841,143 1,880,705 RGD:14298760
G TGFB1 transforming growth factor beta 1 JBrowse link 6 49,332,169 49,348,642 RGD:14298760
G TP53 tumor protein p53 JBrowse link 12 52,939,643 52,953,786 RGD:14298760
positive regulation of RNA splicing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DYRK1A dual specificity tyrosine phosphorylation regulated kinase 1A JBrowse link 13 201,008,506 201,159,946 RGD:14298760
G ERN1 endoplasmic reticulum to nucleus signaling 1 JBrowse link 12 14,881,913 14,963,290 RGD:14298760
G HABP4 hyaluronan binding protein 4 JBrowse link 10 25,599,413 25,636,000 RGD:14298760
G HNRNPK heterogeneous nuclear ribonucleoprotein K JBrowse link 10 30,975,639 30,987,955 RGD:9068941
G HNRNPLL heterogeneous nuclear ribonucleoprotein L like JBrowse link 3 101,753,330 101,795,356 RGD:14298760
G ICAM2 intercellular adhesion molecule 2 JBrowse link 12 14,986,636 14,991,639 RGD:14298760
G KHDRBS3 KH RNA binding domain containing, signal transduction associated 3 JBrowse link 4 6,289,577 6,446,494 RGD:9068941
G PIK3R1 phosphoinositide-3-kinase regulatory subunit 1 JBrowse link 16 46,434,757 46,523,626 RGD:14298760
G POLR2A RNA polymerase II subunit A JBrowse link 12 52,779,833 52,806,210 RGD:9068941
G RBM20 RNA binding motif protein 20 JBrowse link 14 121,058,896 121,269,824 RGD:9068941
G RBM22 RNA binding motif protein 22 JBrowse link 2 151,663,182 151,672,337 RGD:14298760
G SETX senataxin JBrowse link 1 272,093,449 272,170,857 RGD:14298760
G SLC38A2 solute carrier family 38 member 2 JBrowse link 5 77,113,491 77,127,715 RGD:9068941
G SMN1 survival of motor neuron 1, telomeric JBrowse link 16 47,738,776 47,777,381 RGD:9068941
G SRSF1 serine and arginine rich splicing factor 1 JBrowse link 12 34,278,363 34,282,164 RGD:9068941
G SRSF5 serine and arginine rich splicing factor 5 JBrowse link 7 93,393,379 93,398,510 RGD:9068941
G U2AF2 U2 small nuclear RNA auxiliary factor 2 JBrowse link 6 59,773,205 59,789,403 RGD:14298760
G ZPR1 ZPR1 zinc finger JBrowse link 9 44,167,422 44,178,137 RGD:14298760
positive regulation of rRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BUD23 BUD23 rRNA methyltransferase and ribosome maturation factor JBrowse link 3 10,960,037 10,973,084 RGD:9068941
G DIMT1 DIMT1 rRNA methyltransferase and ribosome maturation factor JBrowse link 16 41,098,146 41,111,203 RGD:14298760
G HEATR1 HEAT repeat containing 1 JBrowse link 14 54,821,073 54,870,873 RGD:14298760
G RIOK1 RIO kinase 1 JBrowse link 7 4,750,766 4,776,678 RGD:14298760
G RIOK2 RIO kinase 2 JBrowse link 2 103,802,044 103,823,566 RGD:9068941
G SIRT7 sirtuin 7 JBrowse link 12 1,078,155 1,084,112 RGD:14298760
G TRMT112 tRNA methyltransferase subunit 11-2 JBrowse link 2 7,802,184 7,803,556 RGD:14298760
G UTP15 UTP15 small subunit processome component JBrowse link 2 82,715,411 82,733,042 RGD:14298760
G WDR43 WD repeat domain 43 JBrowse link 3 110,317,549 110,365,108 RGD:14298760
G WDR75 WD repeat domain 75 JBrowse link 15 93,981,054 94,026,479 RGD:14298760
pre-miRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ADAR adenosine deaminase RNA specific JBrowse link 4 95,154,230 95,197,308 RGD:9068941
G AGO1 argonaute RISC component 1 JBrowse link 6 92,038,104 92,076,477 RGD:14298760
G AGO2 argonaute RISC catalytic component 2 JBrowse link 4 2,966,794 3,012,388 RGD:14298760
G AGO3 argonaute RISC catalytic component 3 JBrowse link 6 92,081,763 92,225,811 RGD:14298760
G AGO4 argonaute RISC component 4 JBrowse link 6 91,967,499 92,013,030 RGD:14298760
G DICER1 dicer 1, ribonuclease III JBrowse link 7 116,361,630 116,436,471 RGD:14298760
G DROSHA drosha ribonuclease III JBrowse link 16 17,727,695 17,847,954 RGD:14298760
G LIN28A lin-28 homolog A JBrowse link 6 83,806,178 83,818,550 RGD:14298760
G LIN28B lin-28 homolog B JBrowse link 1 71,173,291 71,296,131 RGD:9068941
G MRPL44 mitochondrial ribosomal protein L44 JBrowse link 15 125,732,419 125,739,819 RGD:14298760
G PRKRA protein activator of interferon induced protein kinase EIF2AK2 JBrowse link 15 84,134,273 84,156,596 RGD:14298760
G TARBP2 TARBP2 subunit of RISC loading complex JBrowse link 5 18,718,588 18,723,843 RGD:14298760
G TUT4 terminal uridylyl transferase 4 JBrowse link 6 159,655,658 159,794,450 RGD:14298760
G TUT7 terminal uridylyl transferase 7 JBrowse link 10 28,995,564 29,061,179 RGD:14298760
pre-mRNA cleavage required for polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CPSF2 cleavage and polyadenylation specific factor 2 JBrowse link 7 113,659,903 113,690,524 RGD:14298760
G CPSF6 cleavage and polyadenylation specific factor 6 JBrowse link 5 33,525,668 33,559,941 RGD:14298760
G CPSF7 cleavage and polyadenylation specific factor 7 JBrowse link 2 10,087,581 10,112,929 RGD:14298760
G CSTF2 cleavage stimulation factor subunit 2 JBrowse link X 82,508,739 82,540,861 RGD:14298760
G CSTF2T cleavage stimulation factor subunit 2 tau variant JBrowse link 14 98,104,957 98,109,479 RGD:14298760
G FIP1L1 factor interacting with PAPOLA and CPSF1 JBrowse link 8 40,157,263 40,235,084 RGD:14298760
G NCBP1 nuclear cap binding protein subunit 1 JBrowse link 1 239,492,573 239,543,925 RGD:9068941
G NCBP2 nuclear cap binding protein subunit 2 JBrowse link 13 133,177,209 133,192,935 RGD:14298760
G NUDT21 nudix hydrolase 21 JBrowse link 6 29,339,893 29,359,596 RGD:9068941
G TUT1 terminal uridylyl transferase 1, U6 snRNA-specific JBrowse link 2 9,148,563 9,161,918 RGD:9068941
primary miRNA methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G METTL3 methyltransferase like 3 JBrowse link 7 77,661,945 77,679,459 RGD:14298760
primary miRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DGCR8 DGCR8 microprocessor complex subunit JBrowse link 14 51,473,512 51,489,535 RGD:14298760
G DROSHA drosha ribonuclease III JBrowse link 16 17,727,695 17,847,954 RGD:14298760
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 JBrowse link 18 46,205,164 46,215,861 RGD:14298760
G METTL3 methyltransferase like 3 JBrowse link 7 77,661,945 77,679,459 RGD:9068941
G MRPL44 mitochondrial ribosomal protein L44 JBrowse link 15 125,732,419 125,739,819 RGD:14298760
G PUS10 pseudouridine synthase 10 JBrowse link 3 80,791,244 80,863,773 RGD:14298760
G SRRT serrate, RNA effector molecule JBrowse link 3 8,717,782 8,731,204 RGD:14298760
production of miRNAs involved in gene silencing by miRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ADAR adenosine deaminase RNA specific JBrowse link 4 95,154,230 95,197,308 RGD:9068941
G AGO1 argonaute RISC component 1 JBrowse link 6 92,038,104 92,076,477 RGD:9068941
G AGO2 argonaute RISC catalytic component 2 JBrowse link 4 2,966,794 3,012,388 RGD:9068941
G AGO3 argonaute RISC catalytic component 3 JBrowse link 6 92,081,763 92,225,811 RGD:9068941
G AGO4 argonaute RISC component 4 JBrowse link 6 91,967,499 92,013,030 RGD:9068941
G DICER1 dicer 1, ribonuclease III JBrowse link 7 116,361,630 116,436,471 RGD:9068941
G PRKRA protein activator of interferon induced protein kinase EIF2AK2 JBrowse link 15 84,134,273 84,156,596 RGD:9068941
G PUM1 pumilio RNA binding family member 1 JBrowse link 6 87,546,388 87,687,483 RGD:14298760
G PUM2 pumilio RNA binding family member 2 JBrowse link 3 117,857,930 117,965,564 RGD:14298760
G RBM3 RNA binding motif protein 3 JBrowse link X 42,704,019 42,707,587 RGD:9068941
G SNIP1 Smad nuclear interacting protein 1 JBrowse link 6 93,597,050 93,612,169 RGD:14298760
G SPOUT1 SPOUT domain containing methyltransferase 1 JBrowse link 1 269,157,173 269,167,154 RGD:14298760
G TARBP2 TARBP2 subunit of RISC loading complex JBrowse link 5 18,718,588 18,723,843 RGD:9068941
G TRIM71 tripartite motif containing 71 JBrowse link 13 18,762,043 18,835,788 RGD:14298760
G ZC3H7A zinc finger CCCH-type containing 7A JBrowse link 3 31,332,486 31,372,802 RGD:14298760
G ZC3H7B zinc finger CCCH-type containing 7B JBrowse link 5 7,148,624 7,201,429 RGD:14298760
production of siRNA involved in RNA interference term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DICER1 dicer 1, ribonuclease III JBrowse link 7 116,361,630 116,436,471 RGD:14298760
G DROSHA drosha ribonuclease III JBrowse link 16 17,727,695 17,847,954 RGD:14298760
G HENMT1 HEN methyltransferase 1 JBrowse link 4 111,364,456 111,382,582 RGD:14298760
G MRPL44 mitochondrial ribosomal protein L44 JBrowse link 15 125,732,419 125,739,819 RGD:14298760
G PRKRA protein activator of interferon induced protein kinase EIF2AK2 JBrowse link 15 84,134,273 84,156,596 RGD:14298760
G TARBP2 TARBP2 subunit of RISC loading complex JBrowse link 5 18,718,588 18,723,843 RGD:14298760
G TERT telomerase reverse transcriptase JBrowse link 16 79,258,591 79,276,421 RGD:14298760
recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CDC73 cell division cycle 73 JBrowse link 10 575,075 667,618 RGD:14298760
G POLR2D RNA polymerase II subunit D JBrowse link 15 59,479,631 59,495,975 RGD:14298760
recruitment of mRNA capping enzyme to RNA polymerase II holoenzyme complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G RAMAC RNA guanine-7 methyltransferase activating subunit JBrowse link 7 51,948,190 51,953,605 RGD:9068941
regulation of alternative mRNA splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CELF1 CUGBP Elav-like family member 1 JBrowse link 2 15,066,518 15,161,478 RGD:14298760
G CELF2 CUGBP Elav-like family member 2 JBrowse link 10 60,504,925 60,867,631 RGD:14298760
G CELF3 CUGBP Elav-like family member 3 JBrowse link 4 97,513,563 97,535,426 RGD:14298760
G CELF4 CUGBP Elav-like family member 4 JBrowse link 6 121,065,604 121,381,052 RGD:14298760
G CELF5 CUGBP Elav-like family member 5 JBrowse link 2 75,314,808 75,364,189 RGD:14298760
G CELF6 CUGBP Elav-like family member 6 JBrowse link 7 60,931,100 60,960,929 RGD:14298760
G DDX17 DEAD-box helicase 17 JBrowse link 5 9,485,792 9,505,157 RGD:9068941
G DDX5 DEAD-box helicase 5 JBrowse link 12 14,571,712 14,580,740 RGD:14298760
G DYRK1A dual specificity tyrosine phosphorylation regulated kinase 1A JBrowse link 13 201,008,506 201,159,946 RGD:9068941
G FAM172A family with sequence similarity 172 member A JBrowse link 2 100,477,770 100,893,594 RGD:14298760
G FMR1 FMRP translational regulator 1 JBrowse link X 120,361,232 120,400,282 RGD:14298760
G FXR1 FMR1 autosomal homolog 1 JBrowse link 13 118,839,314 118,899,804 RGD:14298760
G FXR2 FMR1 autosomal homolog 2 JBrowse link 12 52,885,932 52,903,257 RGD:14298760
G HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 JBrowse link 5 19,485,033 19,491,418 RGD:14298760
G HNRNPL heterogeneous nuclear ribonucleoprotein L JBrowse link 6 47,643,561 47,655,856 RGD:14298760
G HNRNPU heterogeneous nuclear ribonucleoprotein U JBrowse link 10 17,475,266 17,497,060 RGD:14298760
G KHDRBS1 KH RNA binding domain containing, signal transduction associated 1 JBrowse link 6 88,530,364 88,572,467 RGD:14298760
G KHDRBS3 KH RNA binding domain containing, signal transduction associated 3 JBrowse link 4 6,289,577 6,446,494 RGD:14298760
G MAGOH mago homolog, exon junction complex subunit JBrowse link 6 158,988,172 158,998,987 RGD:14298760
G MBNL1 muscleblind like splicing regulator 1 JBrowse link 13 92,491,778 92,696,235 RGD:14298760
G MBNL2 muscleblind like splicing regulator 2 JBrowse link 11 66,481,923 66,641,653 RGD:14298760
G MBNL3 muscleblind like splicing regulator 3 JBrowse link X 108,488,224 108,612,896 RGD:14298760
G MYOD1 myogenic differentiation 1 JBrowse link 2 41,422,522 41,424,236 RGD:14298760
G NOVA1 NOVA alternative splicing regulator 1 JBrowse link 7 72,805,138 72,961,257 RGD:14298760
G NOVA2 NOVA alternative splicing regulator 2 JBrowse link 6 52,248,587 52,278,519 RGD:14298760
G NSRP1 nuclear speckle splicing regulatory protein 1 JBrowse link 12 46,211,202 46,271,509 RGD:14298760
G PTBP1 polypyrimidine tract binding protein 1 JBrowse link 2 77,551,562 77,563,153 RGD:14298760
G PUF60 poly(U) binding splicing factor 60 JBrowse link 4 812,137 824,321 RGD:14298760
G PYGM glycogen phosphorylase, muscle associated JBrowse link 2 7,409,330 7,421,256 RGD:14298760
G QKI QKI, KH domain containing RNA binding JBrowse link 1 4,732,575 4,883,386 RGD:14298760
G RBFOX1 RNA binding fox-1 homolog 1 JBrowse link 3 34,938,703 37,209,772 RGD:14298760
G RBFOX2 RNA binding fox-1 homolog 2 JBrowse link 5 11,633,523 11,905,325 RGD:14298760
G RBFOX3 RNA binding fox-1 homolog 3 JBrowse link 12 3,116,769 3,138,846 RGD:14298760
G RBM10 RNA binding motif protein 10 JBrowse link X 41,773,232 41,803,656 RGD:14298760
G RBM11 RNA binding motif protein 11 JBrowse link 13 179,180,611 179,191,934 RGD:14298760
G RBM15 RNA binding motif protein 15 JBrowse link 4 109,767,464 109,791,555 RGD:14298760
G RBM15B RNA binding motif protein 15B JBrowse link 13 33,664,387 33,671,047 RGD:14298760
G RBM17 RNA binding motif protein 17 JBrowse link 10 64,886,433 64,909,006 RGD:14298760
G RBM19 RNA binding motif protein 19 JBrowse link 14 38,082,042 38,202,548 RGD:14298760
G RBM24 RNA binding motif protein 24 JBrowse link 7 13,126,518 13,139,504 RGD:9068941
G RBM25 RNA binding motif protein 25 JBrowse link 7 96,406,650 96,468,172 RGD:14298760
G RBM4 RNA binding motif protein 4 JBrowse link 2 5,776,535 5,784,337 RGD:14298760
G RBM4B RNA binding motif protein 4B JBrowse link 2 5,745,364 5,758,177 RGD:14298760
G RBM5 RNA binding motif protein 5 JBrowse link 13 32,579,780 32,612,716 RGD:14298760
G RBM7 RNA binding motif protein 7 JBrowse link 9 41,947,081 41,955,683 RGD:14298760
G RBM8A RNA binding motif protein 8A JBrowse link 4 99,408,422 99,411,964 RGD:14298760
G RBMX RNA binding motif protein X-linked JBrowse link X 111,965,859 111,974,544 RGD:14298760
G REST RE1 silencing transcription factor JBrowse link 8 56,035,182 56,061,140 RGD:9068941
G RNPS1 RNA binding protein with serine rich domain 1 JBrowse link 3 39,739,058 39,749,600 RGD:14298760
G SAP18 Sin3A associated protein 18 JBrowse link 11 1,290,195 1,298,990 RGD:14298760
G SART3 spliceosome associated factor 3, U4/U6 recycling protein JBrowse link 14 42,223,752 42,259,992 RGD:14298760
G SREK1 splicing regulatory glutamic acid and lysine rich protein 1 JBrowse link 16 44,578,531 44,621,898 RGD:14298760
G SRRM4 serine/arginine repetitive matrix 4 JBrowse link 14 33,653,542 33,818,859 RGD:14298760
G SRSF1 serine and arginine rich splicing factor 1 JBrowse link 12 34,278,363 34,282,164 RGD:14298760
G SRSF10 serine and arginine rich splicing factor 10 JBrowse link 6 81,727,893 81,741,516 RGD:14298760
G SRSF12 serine and arginine rich splicing factor 12 JBrowse link 1 57,145,078 57,166,138 RGD:14298760
G SRSF2 serine and arginine rich splicing factor 2 JBrowse link 12 4,800,578 4,803,767 RGD:14298760
G SRSF3 serine and arginine rich splicing factor 3 JBrowse link 7 32,289,464 32,298,652 RGD:14298760
G SRSF5 serine and arginine rich splicing factor 5 JBrowse link 7 93,393,379 93,398,510 RGD:14298760
G SRSF6 serine and arginine rich splicing factor 6 JBrowse link 17 46,119,612 46,122,540 RGD:14298760
G SRSF7 serine and arginine rich splicing factor 7 JBrowse link 3 101,599,429 101,608,786 RGD:14298760
G SRSF9 serine and arginine rich splicing factor 9 JBrowse link 14 40,425,412 40,433,950 RGD:14298760
G THRAP3 thyroid hormone receptor associated protein 3 JBrowse link 6 92,350,021 92,412,335 RGD:14298760
G TRA2B transformer 2 beta homolog JBrowse link 13 123,760,008 123,780,919 RGD:14298760
G WTAP WT1 associated protein JBrowse link 1 7,622,544 7,651,732 RGD:14298760
G YTHDC1 YTH domain containing 1 JBrowse link 8 66,086,528 66,122,717 RGD:14298760
G ZBTB7A zinc finger and BTB domain containing 7A JBrowse link 2 74,678,293 74,699,347 RGD:14298760
G ZC3H10 zinc finger CCCH-type containing 10 JBrowse link 5 21,506,510 21,513,972 RGD:14298760
regulation of mRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AHCYL1 adenosylhomocysteinase like 1 JBrowse link 4 110,092,976 110,132,826 RGD:14298760
G PAPOLA poly(A) polymerase alpha JBrowse link 7 117,676,083 117,740,348 RGD:14298760
G ZFP36L1 ZFP36 ring finger protein like 1 JBrowse link 7 92,490,069 92,495,864 RGD:14298760
regulation of mRNA polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NCBP1 nuclear cap binding protein subunit 1 JBrowse link 1 239,492,573 239,543,925 RGD:9068941
G NCBP2 nuclear cap binding protein subunit 2 JBrowse link 13 133,177,209 133,192,935 RGD:9068941
G SNRPA small nuclear ribonucleoprotein polypeptide A JBrowse link 6 48,971,868 48,982,369 RGD:9068941
G ZC3H3 zinc finger CCCH-type containing 3 JBrowse link 4 1,009,927 1,084,133 RGD:14298760
regulation of mRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CDK11B cyclin-dependent kinase 11B JBrowse link 6 63,804,914 63,819,960 RGD:9068941
G DHX9 DExH-box helicase 9 JBrowse link 9 124,141,929 124,183,838 RGD:14298760
G IWS1 interacts with SUPT6H, CTD assembly factor 1 JBrowse link 15 59,822,789 59,875,867 RGD:14298760
G NCBP1 nuclear cap binding protein subunit 1 JBrowse link 1 239,492,573 239,543,925 RGD:14298760
G NOVA1 NOVA alternative splicing regulator 1 JBrowse link 7 72,805,138 72,961,257 RGD:9068941
G PTCD2 pentatricopeptide repeat domain 2 JBrowse link 16 48,605,014 48,635,954 RGD:14298760
G SAFB scaffold attachment factor B JBrowse link 2 73,300,624 73,334,494 RGD:14298760
G SAFB2 scaffold attachment factor B2 JBrowse link 2 73,334,522 73,369,361 RGD:14298760
G SLTM SAFB like transcription modulator JBrowse link 1 113,085,095 113,140,604 RGD:14298760
G SRPK1 SRSF protein kinase 1 JBrowse link 7 31,645,753 31,701,305 RGD:14298760
G SRPK2 SRSF protein kinase 2 JBrowse link 9 105,009,550 105,264,689 RGD:14298760
G SRPK3 SRSF protein kinase 3 JBrowse link X 124,524,102 124,528,607 RGD:14298760
G SUPT6H SPT6 homolog, histone chaperone and transcription elongation factor JBrowse link 12 44,916,716 44,940,732 RGD:14298760
G TMOD1 tropomodulin 1 JBrowse link 1 239,375,150 239,468,387 RGD:14298760
regulation of mRNA splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G C1H9orf78 chromosome 1 C9orf78 homolog JBrowse link 1 269,986,386 269,995,394 RGD:14298760
G HNRNPK heterogeneous nuclear ribonucleoprotein K JBrowse link 10 30,975,639 30,987,955 RGD:14298760
G JMJD6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase JBrowse link 12 4,809,014 4,819,853 RGD:9068941
G KHDRBS1 KH RNA binding domain containing, signal transduction associated 1 JBrowse link 6 88,530,364 88,572,467 RGD:9068941
G KHDRBS2 KH RNA binding domain containing, signal transduction associated 2 JBrowse link 7 27,348,614 27,895,572 RGD:14298760
G KHDRBS3 KH RNA binding domain containing, signal transduction associated 3 JBrowse link 4 6,289,577 6,446,494 RGD:14298760
G LARP7 La ribonucleoprotein 7, transcriptional regulator JBrowse link 8 110,069,565 110,089,789 RGD:9068941
G METTL16 methyltransferase like 16 JBrowse link 12 48,491,254 48,567,253 RGD:14298760
RGD:9068941
G RBM23 RNA binding motif protein 23 JBrowse link 7 76,120,725 76,132,148 RGD:14298760
G RBM39 RNA binding motif protein 39 JBrowse link 17 39,032,141 39,064,803 RGD:14298760
G RBM42 RNA binding motif protein 42 JBrowse link 6 45,074,527 45,083,124 RGD:14298760
G SON SON DNA and RNA binding protein JBrowse link 13 197,162,075 197,193,417 RGD:14298760
G SRSF10 serine and arginine rich splicing factor 10 JBrowse link 6 81,727,893 81,741,516 RGD:9068941
G SRSF3 serine and arginine rich splicing factor 3 JBrowse link 7 32,289,464 32,298,652 RGD:9068941
G TIA1 TIA1 cytotoxic granule associated RNA binding protein JBrowse link 3 72,240,535 72,281,811 RGD:14298760
G YTHDC1 YTH domain containing 1 JBrowse link 8 66,086,528 66,122,717 RGD:14298760
regulation of production of miRNAs involved in gene silencing by miRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TARBP2 TARBP2 subunit of RISC loading complex JBrowse link 5 18,718,588 18,723,843 RGD:14298760
regulation of production of siRNA involved in RNA interference term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TARBP2 TARBP2 subunit of RISC loading complex JBrowse link 5 18,718,588 18,723,843 RGD:14298760
regulation of RNA splicing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AFF2 AF4/FMR2 family member 2 JBrowse link X 120,777,559 121,263,574 RGD:14298760
G AHNAK AHNAK nucleoprotein JBrowse link 2 9,186,984 9,216,450 RGD:9068941
G AHNAK2 AHNAK nucleoprotein 2 RGD:14298760
G AKAP17A A-kinase anchoring protein 17A RGD:14298760
G BRDT bromodomain testis associated JBrowse link 4 125,004,897 125,062,208 RGD:14298760
G CDK12 cyclin dependent kinase 12 JBrowse link 12 22,755,365 22,831,397 RGD:9068941
G CELF1 CUGBP Elav-like family member 1 JBrowse link 2 15,066,518 15,161,478 RGD:9068941
G CLK1 CDC like kinase 1 JBrowse link 15 104,553,512 104,562,348 RGD:14298760
G CLK2 CDC like kinase 2 JBrowse link 4 94,558,220 94,570,084 RGD:14298760
G CLK3 CDC like kinase 3 JBrowse link 7 58,895,407 58,909,616 RGD:14298760
G CLK4 CDC like kinase 4 JBrowse link 2 79,729,460 79,752,945 RGD:14298760
G ESRP1 epithelial splicing regulatory protein 1 JBrowse link 4 41,993,944 42,061,706 RGD:14298760
G ESRP2 epithelial splicing regulatory protein 2 JBrowse link 6 28,804,425 28,814,478 RGD:14298760
G FASTK Fas activated serine/threonine kinase JBrowse link 18 6,145,189 6,149,367 RGD:14298760
G FUS FUS RNA binding protein JBrowse link 3 17,314,936 17,326,663 RGD:14298760
G GRSF1 G-rich RNA sequence binding factor 1 JBrowse link 8 67,586,935 67,607,422 RGD:14298760
G HNRNPF heterogeneous nuclear ribonucleoprotein F JBrowse link 14 61,646,712 61,667,947 RGD:14298760
G HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 JBrowse link 2 78,961,456 78,971,799 RGD:14298760
G HNRNPH2 heterogeneous nuclear ribonucleoprotein H2 JBrowse link X 83,032,525 83,038,369 RGD:14298760
G HNRNPH3 heterogeneous nuclear ribonucleoprotein H3 JBrowse link 14 71,485,925 71,498,356 RGD:14298760
G HNRNPL heterogeneous nuclear ribonucleoprotein L JBrowse link 6 47,643,561 47,655,856 RGD:14298760
G HNRNPLL heterogeneous nuclear ribonucleoprotein L like JBrowse link 3 101,753,330 101,795,356 RGD:14298760
G LOC100737600 DBIRD complex subunit ZNF326 JBrowse link 4 126,679,269 126,703,983 RGD:9068941
G MBNL1 muscleblind like splicing regulator 1 JBrowse link 13 92,491,778 92,696,235 RGD:14298760
G MBNL2 muscleblind like splicing regulator 2 JBrowse link 11 66,481,923 66,641,653 RGD:9068941
G MBNL3 muscleblind like splicing regulator 3 JBrowse link X 108,488,224 108,612,896 RGD:9068941
G METTL4 methyltransferase like 4 JBrowse link 6 104,055,813 104,384,416 RGD:9068941
G MYOD1 myogenic differentiation 1 JBrowse link 2 41,422,522 41,424,236 RGD:9068941
G PQBP1 polyglutamine binding protein 1 JBrowse link X 42,976,086 42,981,732 RGD:14298760
G PRX periaxin JBrowse link 6 48,675,230 48,691,760 RGD:14298760
G PTBP1 polypyrimidine tract binding protein 1 JBrowse link 2 77,551,562 77,563,153 RGD:14298760
G PTBP2 polypyrimidine tract binding protein 2 JBrowse link 4 120,961,211 121,041,876 RGD:14298760
G PTBP3 polypyrimidine tract binding protein 3 JBrowse link 1 252,986,716 253,093,059 RGD:14298760
G RBFOX1 RNA binding fox-1 homolog 1 JBrowse link 3 34,938,703 37,209,772 RGD:14298760
G RBFOX2 RNA binding fox-1 homolog 2 JBrowse link 5 11,633,523 11,905,325 RGD:14298760
G RBFOX3 RNA binding fox-1 homolog 3 JBrowse link 12 3,116,769 3,138,846 RGD:14298760
G RBM12 RNA binding motif protein 12 JBrowse link 17 38,980,072 38,997,304 RGD:14298760
G RBM12B RNA binding motif protein 12B JBrowse link 4 42,946,857 42,971,191 RGD:14298760
G RBM38 RNA binding motif protein 38 JBrowse link 17 57,783,156 57,802,495 RGD:14298760
G RRP1B ribosomal RNA processing 1B JBrowse link 13 206,629,176 206,653,374 RGD:14298760
G SNRNP70 small nuclear ribonucleoprotein U1 subunit 70 JBrowse link 6 54,288,354 54,304,272 RGD:9068941
G SON SON DNA and RNA binding protein JBrowse link 13 197,162,075 197,193,417 RGD:14298760
G SRRM4 serine/arginine repetitive matrix 4 JBrowse link 14 33,653,542 33,818,859 RGD:14298760
G SRSF10 serine and arginine rich splicing factor 10 JBrowse link 6 81,727,893 81,741,516 RGD:14298760
G TRA2B transformer 2 beta homolog JBrowse link 13 123,760,008 123,780,919 RGD:9068941
regulation of rRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NCL nucleolin JBrowse link 15 132,163,453 132,174,214 RGD:9068941
G USP36 ubiquitin specific peptidase 36 JBrowse link 12 3,309,176 3,348,531 RGD:9068941
RNA 3' uridylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LIN28A lin-28 homolog A JBrowse link 6 83,806,178 83,818,550 RGD:14298760
G TENT4A terminal nucleotidyltransferase 4A JBrowse link 16 75,217,212 75,259,805 RGD:14298760
G TENT4B terminal nucleotidyltransferase 4B JBrowse link 6 34,603,157 34,669,779 RGD:9068941
G TUT4 terminal uridylyl transferase 4 JBrowse link 6 159,655,658 159,794,450 RGD:14298760
G TUT7 terminal uridylyl transferase 7 JBrowse link 10 28,995,564 29,061,179 RGD:14298760
RNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CSTF3 cleavage stimulation factor subunit 3 JBrowse link 2 27,769,457 27,850,382 RGD:14298760
G LIN28A lin-28 homolog A JBrowse link 6 83,806,178 83,818,550 RGD:9068941
G LIN28B lin-28 homolog B JBrowse link 1 71,173,291 71,296,131 RGD:9068941
G PAPOLA poly(A) polymerase alpha JBrowse link 7 117,676,083 117,740,348 RGD:14298760
G PAPOLG poly(A) polymerase gamma JBrowse link 3 80,986,395 81,025,369 RGD:14298760
G TUT4 terminal uridylyl transferase 4 JBrowse link 6 159,655,658 159,794,450 RGD:9068941
G TUT7 terminal uridylyl transferase 7 JBrowse link 10 28,995,564 29,061,179 RGD:9068941
RNA 5'-cap (guanine-N7)-methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G RAMAC RNA guanine-7 methyltransferase activating subunit JBrowse link 7 51,948,190 51,953,605 RGD:14298760
G RNMT RNA guanine-7 methyltransferase JBrowse link 6 96,338,283 96,362,814 RGD:14298760
RNA 5'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PIWIL2 piwi like RNA-mediated gene silencing 2 JBrowse link 14 6,560,402 6,632,524 RGD:14298760
RNA splicing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CCAR2 cell cycle and apoptosis regulator 2 JBrowse link 14 6,860,052 6,874,334 RGD:14298760
G CCDC130 coiled-coil domain containing 130 JBrowse link 2 65,355,921 65,372,120 RGD:14298760
G CDK12 cyclin dependent kinase 12 JBrowse link 12 22,755,365 22,831,397 RGD:9068941
G CELF3 CUGBP Elav-like family member 3 JBrowse link 4 97,513,563 97,535,426 RGD:9068941
G DDX39B DExD-box helicase 39B JBrowse link 7 23,658,089 23,669,095 RGD:9068941
G DDX47 DEAD-box helicase 47 JBrowse link 5 59,633,422 59,646,980 RGD:14298760
G FUS FUS RNA binding protein JBrowse link 3 17,314,936 17,326,663 RGD:14298760
G HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 JBrowse link 5 19,485,033 19,491,418 RGD:9068941
G IVNS1ABP influenza virus NS1A binding protein JBrowse link 9 126,459,542 126,480,126 RGD:14298760
G LOC100738822 retinitis pigmentosa 9 protein JBrowse link 18 40,397,551 40,415,127 RGD:14298760
G LSM5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 18 40,752,390 40,755,909 RGD:14298760
G LUC7L3 LUC7 like 3 pre-mRNA splicing factor JBrowse link 12 27,004,894 27,032,156 RGD:9068941
G MAGOH mago homolog, exon junction complex subunit JBrowse link 6 158,988,172 158,998,987 RGD:14298760
G MAGOHB mago homolog B, exon junction complex subunit JBrowse link 5 61,425,699 61,434,026 RGD:14298760
G MBNL1 muscleblind like splicing regulator 1 JBrowse link 13 92,491,778 92,696,235 RGD:14298760
G PRPF18 pre-mRNA processing factor 18 JBrowse link 10 48,062,229 48,122,222 RGD:14298760
G PTBP1 polypyrimidine tract binding protein 1 JBrowse link 2 77,551,562 77,563,153 RGD:14298760
G RBFOX1 RNA binding fox-1 homolog 1 JBrowse link 3 34,938,703 37,209,772 RGD:14298760
G RBFOX2 RNA binding fox-1 homolog 2 JBrowse link 5 11,633,523 11,905,325 RGD:14298760
G RBFOX3 RNA binding fox-1 homolog 3 JBrowse link 12 3,116,769 3,138,846 RGD:14298760
G RBM10 RNA binding motif protein 10 JBrowse link X 41,773,232 41,803,656 RGD:14298760
G RBM5 RNA binding motif protein 5 JBrowse link 13 32,579,780 32,612,716 RGD:14298760
G RBM8A RNA binding motif protein 8A JBrowse link 4 99,408,422 99,411,964 RGD:14298760
G RNPS1 RNA binding protein with serine rich domain 1 JBrowse link 3 39,739,058 39,749,600 RGD:14298760
G RSRC1 arginine and serine rich coiled-coil 1 JBrowse link 13 97,893,815 98,338,108 RGD:9068941
G SART3 spliceosome associated factor 3, U4/U6 recycling protein JBrowse link 14 42,223,752 42,259,992 RGD:14298760
G SCAF11 SR-related CTD associated factor 11 JBrowse link 5 76,809,441 76,876,653 RGD:9068941
G SCNM1 sodium channel modifier 1 JBrowse link 4 98,079,844 98,082,374 RGD:14298760
G SLU7 SLU7 homolog, splicing factor JBrowse link 16 63,118,426 63,145,655 RGD:14298760
G SMU1 SMU1 DNA replication regulator and spliceosomal factor JBrowse link 10 33,399,383 33,426,313 RGD:14298760
G SNRNP27 small nuclear ribonucleoprotein U4/U6.U5 subunit 27 JBrowse link 3 72,556,127 72,566,023 RGD:14298760
G SNRPD2 small nuclear ribonucleoprotein D2 polypeptide JBrowse link 6 52,035,900 52,042,474 RGD:14298760
G SNRPF small nuclear ribonucleoprotein polypeptide F JBrowse link 5 87,614,934 87,622,863 RGD:9068941
G SRPK2 SRSF protein kinase 2 JBrowse link 9 105,009,550 105,264,689 RGD:9068941
G SRSF1 serine and arginine rich splicing factor 1 JBrowse link 12 34,278,363 34,282,164 RGD:14298760
G SRSF11 serine and arginine rich splicing factor 11 JBrowse link 6 142,621,904 142,668,107 RGD:14298760
G SRSF7 serine and arginine rich splicing factor 7 JBrowse link 3 101,599,429 101,608,786 RGD:9068941
G TAF15 TATA-box binding protein associated factor 15 JBrowse link 12 39,687,171 39,716,761 RGD:14298760
G TARDBP TAR DNA binding protein JBrowse link 6 71,213,584 71,227,707 RGD:14298760
G TCERG1 transcription elongation regulator 1 JBrowse link 2 147,789,225 147,852,461 RGD:9068941
G THRAP3 thyroid hormone receptor associated protein 3 JBrowse link 6 92,350,021 92,412,335 RGD:14298760
G U2AF2 U2 small nuclear RNA auxiliary factor 2 JBrowse link 6 59,773,205 59,789,403 RGD:14298760
G UMOD uromodulin JBrowse link 3 25,473,048 25,492,286 RGD:9068941
G USB1 U6 snRNA biogenesis phosphodiesterase 1 JBrowse link 6 19,852,020 19,874,016 RGD:14298760
G WBP11 WW domain binding protein 11 JBrowse link 5 57,749,948 57,766,788 RGD:9068941
G WBP4 WW domain binding protein 4 JBrowse link 11 25,735,209 25,772,555 RGD:14298760
G WT1 WT1 transcription factor JBrowse link 2 28,411,467 28,456,007 RGD:14298760
G YJU2 YJU2 splicing factor homolog JBrowse link 2 74,507,830 74,528,333 RGD:14298760
G ZNF638 zinc finger protein 638 JBrowse link 3 71,284,276 71,424,285 RGD:14298760
RNA splicing, via transesterification reactions term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DBR1 debranching RNA lariats 1 JBrowse link 13 78,958,301 78,970,250 RGD:9068941
G SCAF11 SR-related CTD associated factor 11 JBrowse link 5 76,809,441 76,876,653 RGD:9068941
G SLU7 SLU7 homolog, splicing factor JBrowse link 16 63,118,426 63,145,655