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ONTOLOGY REPORT - ANNOTATIONS


Term:RNA processing
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Accession:GO:0006396 term browser browse the term
Definition:Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
Synonyms:alt_id: GO:0006394
 xref: Wikipedia:Post-transcriptional_modification


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RNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adarb1 adenosine deaminase RNA specific B1 JBrowse link NW_004936778 1,056,259 1,137,772 RGD:9068941
G Ddx54 DEAD-box helicase 54 JBrowse link NW_004936668 3,062,868 3,074,769 RGD:9068941
G Dicer1 dicer 1, ribonuclease III JBrowse link NW_004936846 528,768 584,599 RGD:9068941
G Elavl4 ELAV like RNA binding protein 4 JBrowse link NW_004936522 10,349,684 10,435,963 RGD:9068941
G Rngtt RNA guanylyltransferase and 5'-phosphatase JBrowse link NW_004936510 3,186,552 3,405,862 RGD:9068941
G Wdhd1 WD repeat and HMG-box DNA binding protein 1 JBrowse link NW_004936697 129,821 184,238 RGD:9068941
7-methylguanosine cap hypermethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tgs1 trimethylguanosine synthase 1 JBrowse link NW_004936496 2,484,700 2,524,650 RGD:9068941
7-methylguanosine mRNA capping term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cmtr1 cap methyltransferase 1 JBrowse link NW_004936476 21,987,013 22,035,708 RGD:9068941
G Cmtr2 cap methyltransferase 2 JBrowse link NW_004936475 22,434,009 22,441,350 RGD:9068941
G Ncbp1 nuclear cap binding protein subunit 1 JBrowse link NW_004936524 6,429,735 6,465,035 RGD:9068941
G Ramac RNA guanine-7 methyltransferase activating subunit JBrowse link NW_004936483 17,634,873 17,643,740 RGD:9068941
G Rngtt RNA guanylyltransferase and 5'-phosphatase JBrowse link NW_004936510 3,186,552 3,405,862 RGD:9068941
G Rnmt RNA guanine-7 methyltransferase JBrowse link NW_004936626 3,132,781 3,156,252 RGD:9068941
alternative mRNA splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdk13 cyclin dependent kinase 13 JBrowse link NW_004936478 15,296,055 15,387,749 RGD:9068941
G Celf4 CUGBP Elav-like family member 4 JBrowse link NW_004936517 8,010,133 8,010,721 RGD:9068941
G Ddx17 DEAD-box helicase 17 JBrowse link NW_004936492 2,806,630 2,826,071 RGD:9068941
G Ddx5 DEAD-box helicase 5 JBrowse link NW_004936541 5,005,211 5,013,439 RGD:9068941
G Dhx9 DExH-box helicase 9 JBrowse link NW_004936481 6,896,487 6,934,938 RGD:9068941
G Esrp1 epithelial splicing regulatory protein 1 JBrowse link NW_004936544 7,633,266 7,690,624 RGD:9068941
G Esrp2 epithelial splicing regulatory protein 2 JBrowse link NW_004936475 18,557,840 18,564,461 RGD:9068941
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 JBrowse link NW_004936512 11,481,017 11,487,737 RGD:9068941
G Hnrnpm heterogeneous nuclear ribonucleoprotein M JBrowse link NW_004936588 5,241,276 5,283,952 RGD:9068941
G Insr insulin receptor JBrowse link NW_004936588 4,345,306 4,453,380 RGD:9068941
G Kdm1a lysine demethylase 1A JBrowse link NW_004936474 8,262,913 8,319,089 RGD:9068941
G Mbnl1 muscleblind like splicing regulator 1 JBrowse link NW_004936519 419,332 580,706 RGD:9068941
G Pqbp1 polyglutamine binding protein 1 JBrowse link NW_004936721 825,171 830,010 RGD:9068941
G Rbm17 RNA binding motif protein 17 JBrowse link NW_004936484 8,457,469 8,478,030 RGD:9068941
G Rsrc1 arginine and serine rich coiled-coil 1 JBrowse link NW_004936519 4,822,587 5,126,203 RGD:9068941
G Scnm1 sodium channel modifier 1 JBrowse link NW_004936580 1,370,944 1,374,671 RGD:9068941
G Sfpq splicing factor proline and glutamine rich JBrowse link NW_004936474 17,776,490 17,791,966 RGD:9068941
G Sfswap splicing factor SWAP JBrowse link NW_004936660 2,055,180 2,121,008 RGD:9068941
G Slu7 SLU7 homolog, splicing factor JBrowse link NW_004936515 3,172,962 3,179,915 RGD:9068941
G Srsf1 serine and arginine rich splicing factor 1 JBrowse link NW_004936490 5,055,258 5,059,118 RGD:9068941
G Srsf6 serine and arginine rich splicing factor 6 JBrowse link NW_004936530 3,086,944 3,092,780 RGD:9068941
box C/D snoRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Larp7 La ribonucleoprotein 7, transcriptional regulator JBrowse link NW_004936563 3,455,205 3,474,955 RGD:9068941
box H/ACA snoRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Parn poly(A)-specific ribonuclease JBrowse link NW_004936501 2,666,908 2,810,159 RGD:9068941
cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bop1 BOP1 ribosomal biogenesis factor JBrowse link NW_004936470 7,950,952 7,977,186 RGD:9068941
G Npm1 nucleophosmin 1 JBrowse link NW_004936609 3,712,628 3,725,635 RGD:9068941
conversion of ds siRNA to ss siRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dicer1 dicer 1, ribonuclease III JBrowse link NW_004936846 528,768 584,599 RGD:9068941
conversion of ds siRNA to ss siRNA involved in RNA interference term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dicer1 dicer 1, ribonuclease III JBrowse link NW_004936846 528,768 584,599 RGD:9068941
endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fcf1 FCF1 rRNA-processing protein JBrowse link NW_004936488 3,882,110 3,898,480 RGD:9068941
G Rcl1 RNA terminal phosphate cyclase like 1 JBrowse link NW_004936503 375,191 450,596 RGD:9068941
G Utp23 UTP23 small subunit processome component JBrowse link NW_004936470 29,489,354 29,495,171 RGD:9068941
endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fcf1 FCF1 rRNA-processing protein JBrowse link NW_004936488 3,882,110 3,898,480 RGD:9068941
G Rcl1 RNA terminal phosphate cyclase like 1 JBrowse link NW_004936503 375,191 450,596 RGD:9068941
enzyme-directed rRNA pseudouridine synthesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dkc1 dyskerin pseudouridine synthase 1 JBrowse link NW_004936927 134,770 144,057 RGD:9068941
G Tsr3 TSR3 ribosome maturation factor JBrowse link NW_004936694 2,540,446 2,542,666 RGD:9068941
maturation of 5.8S rRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G C1d C1D nuclear receptor corepressor JBrowse link NW_004936491 12,517,679 12,534,052 RGD:9068941
G Exosc10 exosome component 10 JBrowse link NW_004936474 130,735 153,608 RGD:9068941
G Exosc4 exosome component 4 JBrowse link NW_004936470 8,097,218 8,099,319 RGD:9068941
G Mphosph6 M-phase phosphoprotein 6 JBrowse link NW_004936475 29,522,293 29,533,005 RGD:9068941
G Mtrex Mtr4 exosome RNA helicase JBrowse link NW_004936480 12,357,637 12,458,728 RGD:9068941
G Nol9 nucleolar protein 9 JBrowse link NW_004936623 1,302,818 1,323,610 RGD:9068941
G Prkdc protein kinase, DNA-activated, catalytic subunit JBrowse link NW_004936590 4,722,914 4,887,615 RGD:9068941
maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pes1 pescadillo ribosomal biogenesis factor 1 JBrowse link NW_004936904 125,922 140,559 RGD:9068941
G Wdr12 WD repeat domain 12 JBrowse link NW_004936726 1,931,221 1,958,457 RGD:9068941
maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bop1 BOP1 ribosomal biogenesis factor JBrowse link NW_004936470 7,950,952 7,977,186 RGD:9068941
G Gtpbp4 GTP binding protein 4 JBrowse link NW_004936484 13,101,328 13,127,211 RGD:9068941
G Pes1 pescadillo ribosomal biogenesis factor 1 JBrowse link NW_004936904 125,922 140,559 RGD:9068941
G Wdr12 WD repeat domain 12 JBrowse link NW_004936726 1,931,221 1,958,457 RGD:9068941
maturation of SSU-rRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nol11 nucleolar protein 11 JBrowse link NW_004936541 5,448,346 5,475,064 RGD:9068941
G Riok1 RIO kinase 1 JBrowse link NW_004936534 5,184,313 5,220,565 RGD:9068941
G Riok2 RIO kinase 2 JBrowse link NW_004936523 6,293,735 6,313,840 RGD:9068941
G Riok3 RIO kinase 3 JBrowse link NW_004936550 2,921,272 2,949,288 RGD:9068941
G Rps19 ribosomal protein S19 JBrowse link NW_004936706 568,443 575,973 RGD:9068941
G Utp4 UTP4 small subunit processome component JBrowse link NW_004936475 19,295,047 19,324,340 RGD:9068941
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bysl bystin like JBrowse link NW_004936476 17,887,998 17,896,598 RGD:9068941
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit JBrowse link NW_004936706 1,816,561 1,829,638 RGD:9068941
G Gtf2h5 general transcription factor IIH subunit 5 JBrowse link NW_004936489 9,983,935 9,993,179 RGD:9068941
G Rps19 ribosomal protein S19 JBrowse link NW_004936706 568,443 575,973 RGD:9068941
mitochondrial mRNA polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 JBrowse link NW_004936491 1,989,429 2,032,430 RGD:9068941
mitochondrial mRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tbrg4 transforming growth factor beta regulator 4 JBrowse link NW_004936478 19,906,227 19,915,815 RGD:9068941
mitochondrial RNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 JBrowse link NW_004936491 1,989,429 2,032,430 RGD:9068941
G Supv3l1 Suv3 like RNA helicase JBrowse link NW_004936521 9,237,081 9,264,441 RGD:9068941
mitochondrial RNA 5'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 JBrowse link NW_004936491 1,989,429 2,032,430 RGD:9068941
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit JBrowse link NW_004936630 1,823,045 1,827,050 RGD:9068941
mitochondrial RNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fastkd5 FAST kinase domains 5 JBrowse link NW_004936485 15,550,388 15,558,886 RGD:9068941
mitochondrial tRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hsd17b10 hydroxysteroid 17-beta dehydrogenase 10 JBrowse link NW_004936751 399,743 402,200 RGD:9068941
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit JBrowse link NW_004936630 1,823,045 1,827,050 RGD:9068941
G Trnt1 tRNA nucleotidyl transferase 1 JBrowse link NW_004936577 2,814,464 2,834,068 RGD:9068941
mitochondrial tRNA 3'-trailer cleavage, endonucleolytic term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Elac2 elaC ribonuclease Z 2 JBrowse link NW_004936595 5,543,476 5,565,075 RGD:9068941
mitochondrial tRNA 5'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hsd17b10 hydroxysteroid 17-beta dehydrogenase 10 JBrowse link NW_004936751 399,743 402,200 RGD:9068941
G Prorp protein only RNase P catalytic subunit JBrowse link NW_004936494 9,282,894 9,414,350 RGD:9068941
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit JBrowse link NW_004936630 1,823,045 1,827,050 RGD:9068941
mitochondrial tRNA methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hsd17b10 hydroxysteroid 17-beta dehydrogenase 10 JBrowse link NW_004936751 399,743 402,200 RGD:9068941
G Trmt5 tRNA methyltransferase 5 JBrowse link NW_004936495 5,131,642 5,137,998 RGD:9068941
G Trmt61b tRNA methyltransferase 61B JBrowse link NW_004936493 3,923,059 3,938,104 RGD:9068941
mitochondrial tRNA modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdk5rap1 CDK5 regulatory subunit associated protein 1 JBrowse link NW_004936561 7,142,528 7,174,435 RGD:9068941
mitochondrial tRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit JBrowse link NW_004936630 1,823,045 1,827,050 RGD:9068941
mitochondrial tRNA wobble uridine modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mto1 mitochondrial tRNA translation optimization 1 JBrowse link NW_004936859 757,977 788,073 RGD:9068941
mRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Zc3h3 zinc finger CCCH-type containing 3 JBrowse link NW_004936470 8,591,564 8,675,505 RGD:9068941
mRNA 3'-end processing by stem-loop binding and cleavage term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cpsf2 cleavage and polyadenylation specific factor 2 JBrowse link NW_004936733 367,082 397,242 RGD:9068941
G Cpsf3 cleavage and polyadenylation specific factor 3 JBrowse link NW_004936532 5,814,331 5,850,188 RGD:9068941
G Lsm11 LSM11, U7 small nuclear RNA associated JBrowse link NW_004936515 5,448,490 5,459,295 RGD:9068941
G Slbp stem-loop binding protein JBrowse link NW_004936477 21,672,143 21,680,899 RGD:9068941
G Znf473 zinc finger protein 473 JBrowse link NW_004936889 39,812 56,052 RGD:9068941
mRNA 3'-splice site recognition term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Slu7 SLU7 homolog, splicing factor JBrowse link NW_004936515 3,172,962 3,179,915 RGD:9068941
mRNA 5'-splice site recognition term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Psip1 PC4 and SFRS1 interacting protein 1 JBrowse link NW_004936539 8,894,285 8,940,831 RGD:9068941
G Sfswap splicing factor SWAP JBrowse link NW_004936660 2,055,180 2,121,008 RGD:9068941
G Srsf1 serine and arginine rich splicing factor 1 JBrowse link NW_004936490 5,055,258 5,059,118 RGD:9068941
G Srsf12 serine and arginine rich splicing factor 12 JBrowse link NW_004936510 3,077,940 3,095,985 RGD:9068941
mRNA alternative polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cpsf6 cleavage and polyadenylation specific factor 6 JBrowse link NW_004936545 7,045,043 7,077,710 RGD:9068941
G Cpsf7 cleavage and polyadenylation specific factor 7 JBrowse link NW_004936581 1,629,078 1,651,147 RGD:9068941
G Nudt21 nudix hydrolase 21 JBrowse link NW_004936475 8,739,992 8,759,165 RGD:9068941
G Virma vir like m6A methyltransferase associated JBrowse link NW_004936544 7,485,986 7,549,625 RGD:9068941
mRNA cis splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dcps decapping enzyme, scavenger JBrowse link NW_004936572 5,861,391 5,899,757 RGD:9068941
G Ncbp2 nuclear cap binding protein subunit 2 JBrowse link NW_004936833 920,683 928,047 RGD:9068941
G Rbm22 RNA binding motif protein 22 JBrowse link NW_004936504 4,294,010 4,304,669 RGD:9068941
G Wbp4 WW domain binding protein 4 JBrowse link NW_004936667 426,752 449,562 RGD:9068941
mRNA cleavage involved in mRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ern1 endoplasmic reticulum to nucleus signaling 1 JBrowse link NW_004936541 4,613,197 4,705,911 RGD:9068941
mRNA polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ahcyl1 adenosylhomocysteinase like 1 JBrowse link NW_004936704 1,438,781 1,477,541 RGD:9068941
G Aplp1 amyloid beta precursor like protein 1 JBrowse link NW_004936570 475,446 484,379 RGD:9068941
G App amyloid beta precursor protein JBrowse link NW_004936640 1,549,977 1,787,436 RGD:9068941
G Cdc73 cell division cycle 73 JBrowse link NW_004936638 1,365,457 1,482,497 RGD:9068941
G Cpsf1 cleavage and polyadenylation specific factor 1 JBrowse link NW_004936470 7,848,846 7,857,291 RGD:9068941
G LOC101959183 RNA polymerase-associated protein LEO1 JBrowse link NW_004936471 13,753,061 13,783,990 RGD:9068941
G Mtpap mitochondrial poly(A) polymerase JBrowse link NW_004936613 3,836,461 3,865,240 RGD:9068941
G Pabpc1l poly(A) binding protein cytoplasmic 1 like JBrowse link NW_004936514 7,809,030 7,831,606 RGD:9068941
G Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component JBrowse link NW_004936661 2,236,121 2,241,086 RGD:9068941
G Papola poly(A) polymerase alpha JBrowse link NW_004936604 770,050 833,950 RGD:9068941
G Ssu72 SSU72 homolog, RNA polymerase II CTD phosphatase JBrowse link NW_004936737 1,678,425 1,705,569 RGD:9068941
G Sympk symplekin JBrowse link NW_004936706 2,161,933 2,195,586 RGD:9068941
G Tent4b terminal nucleotidyltransferase 4B JBrowse link NW_004936475 3,266,763 3,328,209 RGD:9068941
G Tut1 terminal uridylyl transferase 1, U6 snRNA-specific JBrowse link NW_004936581 665,751 691,448 RGD:9068941
mRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Akap8l A-kinase anchoring protein 8 like JBrowse link NW_004936596 5,088,260 5,123,735 RGD:9068941
G Alkbh5 alkB homolog 5, RNA demethylase JBrowse link NW_004936741 1,729,707 1,756,108 RGD:9068941
G Cpsf6 cleavage and polyadenylation specific factor 6 JBrowse link NW_004936545 7,045,043 7,077,710 RGD:9068941
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 JBrowse link NW_004936478 2,970,261 2,980,277 RGD:9068941
G Khdrbs3 KH RNA binding domain containing, signal transduction associated 3 JBrowse link NW_004936470 14,232,114 14,403,910 RGD:9068941
G LOC101967165 histone H2A-Bbd type 2/3 JBrowse link NW_004936927 232,353 232,857 RGD:9068941
G Mettl3 methyltransferase like 3 JBrowse link NW_004936880 646,835 661,312 RGD:9068941
G Nudt21 nudix hydrolase 21 JBrowse link NW_004936475 8,739,992 8,759,165 RGD:9068941
G Phrf1 PHD and ring finger domains 1 JBrowse link NW_004936888 418,089 445,032 RGD:9068941
G Prkaca protein kinase cAMP-activated catalytic subunit alpha JBrowse link NW_004936659 2,750,015 2,765,914 RGD:9068941
G Prmt9 protein arginine methyltransferase 9 JBrowse link NW_004936535 1,811,376 1,855,636 RGD:9068941
G Ptbp1 polypyrimidine tract binding protein 1 JBrowse link NW_004936588 316,348 326,895 RGD:9068941
G Qki QKI, KH domain containing RNA binding JBrowse link NW_004936489 13,901,066 14,000,652 RGD:9068941
G Scaf1 SR-related CTD associated factor 1 JBrowse link NW_004936664 3,462,063 3,476,743 RGD:9068941
G Scaf4 SR-related CTD associated factor 4 JBrowse link NW_004936500 10,307,868 10,342,952 RGD:9068941
G Scaf8 SR-related CTD associated factor 8 JBrowse link NW_004936489 7,059,075 7,289,656 RGD:9068941
G Sf3a1 splicing factor 3a subunit 1 JBrowse link NW_004936904 310,182 328,882 RGD:9068941
G Sf3a2 splicing factor 3a subunit 2 JBrowse link NW_004936588 1,335,143 1,342,573 RGD:9068941
G Sf3a3 splicing factor 3a subunit 3 JBrowse link NW_004936474 20,092,159 20,116,612 RGD:9068941
G Son SON DNA and RNA binding protein JBrowse link NW_004936500 8,721,155 8,752,906 RGD:9068941
G Srrm4 serine/arginine repetitive matrix 4 JBrowse link NW_004936668 1,523,232 1,668,591 RGD:9068941
G Tcerg1 transcription elongation regulator 1 JBrowse link NW_004936504 8,182,126 8,247,680 RGD:9068941
mRNA splice site selection term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Celf1 CUGBP Elav-like family member 1 JBrowse link NW_004936562 1,699,774 1,785,285 RGD:9068941
G Celf2 CUGBP Elav-like family member 2 JBrowse link NW_004936484 3,904,726 4,401,560 RGD:9068941
G Celf4 CUGBP Elav-like family member 4 JBrowse link NW_004936517 8,010,133 8,010,721 RGD:9068941
G Khdc4 KH domain containing 4, pre-mRNA splicing factor JBrowse link NW_004936580 5,167,930 5,188,334 RGD:9068941
G Mbnl1 muscleblind like splicing regulator 1 JBrowse link NW_004936519 419,332 580,706 RGD:9068941
G Nol3 nucleolar protein 3 JBrowse link NW_004936475 17,644,299 17,648,213 RGD:9068941
G Ptbp2 polypyrimidine tract binding protein 2 JBrowse link NW_004936537 2,676,920 2,748,568 RGD:9068941
G Rbmx RNA binding motif protein X-linked JBrowse link NW_004936513 10,429,862 10,442,509 RGD:9068941
G Setx senataxin JBrowse link NW_004936487 18,858,384 18,945,253 RGD:9068941
G Srsf10 serine and arginine rich splicing factor 10 JBrowse link NW_004936474 9,068,012 9,079,717 RGD:9068941
G Srsf6 serine and arginine rich splicing factor 6 JBrowse link NW_004936530 3,086,944 3,092,780 RGD:9068941
G Ythdc1 YTH domain containing 1 JBrowse link NW_004936582 130,593 161,275 RGD:9068941
mRNA splicing, via endonucleolytic cleavage and ligation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ern1 endoplasmic reticulum to nucleus signaling 1 JBrowse link NW_004936541 4,613,197 4,705,911 RGD:9068941
mRNA splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aqr aquarius intron-binding spliceosomal factor JBrowse link NW_004936673 922,393 1,032,572 RGD:9068941
G Bcas2 BCAS2 pre-mRNA processing factor JBrowse link NW_004936690 2,900,003 2,913,427 RGD:9068941
G Bud13 BUD13 homolog JBrowse link NW_004936542 2,027,316 2,053,522 RGD:9068941
G Bud31 BUD31 homolog JBrowse link NW_004936750 1,676,361 1,684,194 RGD:9068941
G Casc3 CASC3 exon junction complex subunit JBrowse link NW_004936490 15,251,132 15,278,264 RGD:9068941
G Cdc40 cell division cycle 40 JBrowse link NW_004936564 6,096,180 6,143,852 RGD:9068941
G Cdc5l cell division cycle 5 like JBrowse link NW_004936476 15,647,470 15,698,095 RGD:9068941
G Crnkl1 crooked neck pre-mRNA splicing factor 1 JBrowse link NW_004936485 328,077 351,323 RGD:9068941
G Cwc15 CWC15 spliceosome associated protein homolog JBrowse link NW_004936674 76,022 83,110 RGD:9068941
G Cwc22 CWC22 spliceosome associated protein homolog JBrowse link NW_004936509 8,904,613 8,960,852 RGD:9068941
G Cwc25 CWC25 spliceosome associated protein homolog JBrowse link NW_004936490 14,201,851 14,226,724 RGD:9068941
G Dbr1 debranching RNA lariats 1 JBrowse link NW_004936540 504,638 515,913 RGD:9068941
G Ddx39a DExD-box helicase 39A JBrowse link NW_004936659 2,973,340 2,981,973 RGD:9068941
G Ddx39b DExD-box helicase 39B JBrowse link NW_004936727 1,968,032 1,980,789 RGD:9068941
G Ddx41 DEAD-box helicase 41 JBrowse link NW_004936597 1,787,830 1,793,352 RGD:9068941
G Dhx16 DEAH-box helicase 16 JBrowse link NW_004936837 324,244 341,667 RGD:9068941
G Dhx38 DEAH-box helicase 38 JBrowse link NW_004936475 21,811,693 21,830,560 RGD:9068941
G Dhx8 DEAH-box helicase 8 JBrowse link NW_004936541 85,273 122,161 RGD:9068941
G Eftud2 elongation factor Tu GTP binding domain containing 2 JBrowse link NW_004936541 1,216,584 1,259,355 RGD:9068941
G Eif4a3 eukaryotic translation initiation factor 4A3 JBrowse link NW_004936594 4,148,401 4,160,290 RGD:9068941
G Gpkow G-patch domain and KOW motifs JBrowse link NW_004936721 1,013,776 1,031,018 RGD:9068941
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 JBrowse link NW_004936478 2,970,261 2,980,277 RGD:9068941
G Hnrnpc heterogeneous nuclear ribonucleoprotein C JBrowse link NW_004936880 368,041 425,967 RGD:9068941
G Ik IK cytokine JBrowse link NW_004936531 9,589,035 9,601,266 RGD:9068941
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link NW_004936727 1,746,072 1,751,944 RGD:9068941
G Lsm3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link NW_004936602 140,014 147,000 RGD:9068941
G Lsm4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link NW_004936596 2,903,363 2,916,629 RGD:9068941
G Lsm5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link NW_004936478 8,541,293 8,545,280 RGD:9068941
G Lsm6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link NW_004936535 3,089,778 3,103,342 RGD:9068941
G Lsm7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link NW_004936588 1,390,456 1,393,940 RGD:9068941
G Lsm8 LSM8 homolog, U6 small nuclear RNA associated JBrowse link NW_004936589 1,107,534 1,113,439 RGD:9068941
G Mettl14 methyltransferase like 14 JBrowse link NW_004936869 568,324 589,972 RGD:9068941
G Mettl3 methyltransferase like 3 JBrowse link NW_004936880 646,835 661,312 RGD:9068941
G Mfap1 microfibril associated protein 1 JBrowse link NW_004936471 6,863,262 6,876,669 RGD:9068941
G Nova1 NOVA alternative splicing regulator 1 JBrowse link NW_004936494 1,720,030 1,853,177 RGD:9068941
G Phf5a PHD finger protein 5A JBrowse link NW_004936492 452,628 461,915 RGD:9068941
G Plrg1 pleiotropic regulator 1 JBrowse link NW_004936576 1,284,758 1,297,758 RGD:9068941
G Ppie peptidylprolyl isomerase E JBrowse link NW_004936474 21,602,555 21,616,857 RGD:9068941
G Ppil1 peptidylprolyl isomerase like 1 JBrowse link NW_004936476 22,552,484 22,570,860 RGD:9068941
G Prpf19 pre-mRNA processing factor 19 JBrowse link NW_004936581 2,031,894 2,042,294 RGD:9068941
G Prpf3 pre-mRNA processing factor 3 JBrowse link NW_004936580 604,709 632,788 RGD:9068941
G Prpf31 pre-mRNA processing factor 31 JBrowse link NW_004936994 239,688 252,269 RGD:9068941
G Prpf38a pre-mRNA processing factor 38A JBrowse link NW_004936522 8,540,839 8,580,604 RGD:9068941
G Prpf4 pre-mRNA processing factor 4 JBrowse link NW_004936559 305,443 321,051 RGD:9068941
G Prpf6 pre-mRNA processing factor 6 JBrowse link NW_004936514 11,175,410 11,220,928 RGD:9068941
G Prpf8 pre-mRNA processing factor 8 JBrowse link NW_004936538 7,780,022 7,814,575 RGD:9068941
G Rbm8a RNA binding motif protein 8A JBrowse link NW_004936867 666,208 667,851 RGD:9068941
G Rbmx2 RNA binding motif protein X-linked 2 JBrowse link NW_004936479 1,232,921 1,245,665 RGD:9068941
G Rnf113a ring finger protein 113A JBrowse link NW_004936479 10,078,201 10,079,400 RGD:9068941
G Rsrc1 arginine and serine rich coiled-coil 1 JBrowse link NW_004936519 4,822,587 5,126,203 RGD:9068941
G Sart1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP JBrowse link NW_004936599 3,577,552 3,588,825 RGD:9068941
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein JBrowse link NW_004936769 450,919 490,938 RGD:9068941
G Sf3a1 splicing factor 3a subunit 1 JBrowse link NW_004936904 310,182 328,882 RGD:9068941
G Sf3a2 splicing factor 3a subunit 2 JBrowse link NW_004936588 1,335,143 1,342,573 RGD:9068941
G Sf3a3 splicing factor 3a subunit 3 JBrowse link NW_004936474 20,092,159 20,116,612 RGD:9068941
G Sf3b1 splicing factor 3b subunit 1 JBrowse link NW_004936506 1,749,591 1,790,860 RGD:9068941
G Sf3b2 splicing factor 3b subunit 2 JBrowse link NW_004936599 3,477,882 3,494,366 RGD:9068941
G Sf3b3 splicing factor 3b subunit 3 JBrowse link NW_004936475 23,038,424 23,086,134 RGD:9068941
G Sf3b4 splicing factor 3b subunit 4 JBrowse link NW_004936580 260,013 265,057 RGD:9068941
G Sf3b5 splicing factor 3b subunit 5 JBrowse link NW_004936625 2,151,018 2,151,743 RGD:9068941
G Sf3b6 splicing factor 3b subunit 6 JBrowse link NW_004936493 7,906,701 7,912,777 RGD:9068941
G Smu1 SMU1 DNA replication regulator and spliceosomal factor JBrowse link NW_004936524 1,615,299 1,639,133 RGD:9068941
G Snip1 Smad nuclear interacting protein 1 JBrowse link NW_004936474 19,760,653 19,778,224 RGD:9068941
G Snrnp70 small nuclear ribonucleoprotein U1 subunit 70 JBrowse link NW_004936664 3,035,679 3,054,577 RGD:9068941
G Snrpa1 small nuclear ribonucleoprotein polypeptide A' JBrowse link NW_004936483 2,572,520 2,582,297 RGD:9068941
G Snrpb small nuclear ribonucleoprotein polypeptides B and B1 JBrowse link NW_004936485 16,142,231 16,161,761 RGD:9068941
G Snrpb2 small nuclear ribonucleoprotein polypeptide B2 JBrowse link NW_004936485 3,296,350 3,305,985 RGD:9068941
G Snrpc small nuclear ribonucleoprotein polypeptide C JBrowse link NW_004936476 24,371,268 24,389,355 RGD:9068941
G Snrpd1 small nuclear ribonucleoprotein D1 polypeptide JBrowse link NW_004936550 1,323,351 1,335,074 RGD:9068941
G Snrpd2 small nuclear ribonucleoprotein D2 polypeptide JBrowse link NW_004936706 2,065,315 2,068,709 RGD:9068941
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide JBrowse link NW_004936619 728,759 744,367 RGD:9068941
G Snrpe small nuclear ribonucleoprotein polypeptide E JBrowse link NW_004936567 849,300 855,214 RGD:9068941
G Snrpf small nuclear ribonucleoprotein polypeptide F JBrowse link NW_004936507 11,973,818 11,980,370 RGD:9068941
G Snrpg small nuclear ribonucleoprotein polypeptide G JBrowse link NW_004936491 14,442,904 14,450,717 RGD:9068941
G Snu13 small nuclear ribonucleoprotein 13 JBrowse link NW_004936492 289,834 295,883 RGD:9068941
G Snw1 SNW domain containing 1 JBrowse link NW_004936488 6,494,556 6,531,297 RGD:9068941
G Srrm2 serine/arginine repetitive matrix 2 JBrowse link NW_004936694 1,280,104 1,296,301 RGD:9068941
G Srsf10 serine and arginine rich splicing factor 10 JBrowse link NW_004936474 9,068,012 9,079,717 RGD:9068941
G Syf2 SYF2 pre-mRNA splicing factor JBrowse link NW_004936474 9,970,047 9,975,260 RGD:9068941
G Tra2a transformer 2 alpha homolog JBrowse link NW_004936478 622,527 642,529 RGD:9068941
G Tra2b transformer 2 beta homolog JBrowse link NW_004936578 3,949,820 3,970,462 RGD:9068941
G Txnl4a thioredoxin like 4A JBrowse link NW_004936616 220,255 232,042 RGD:9068941
G U2af2 U2 small nuclear RNA auxiliary factor 2 JBrowse link NW_004936981 176,552 193,798 RGD:9068941
G Usp39 ubiquitin specific peptidase 39 JBrowse link NW_004936712 1,625,429 1,661,561 RGD:9068941
G Usp49 ubiquitin specific peptidase 49 JBrowse link NW_004936476 17,946,875 18,002,081 RGD:9068941
G Wbp4 WW domain binding protein 4 JBrowse link NW_004936667 426,752 449,562 RGD:9068941
G Wdr83 WD repeat domain 83 JBrowse link NW_004936659 1,796,030 1,803,714 RGD:9068941
G Xab2 XPA binding protein 2 JBrowse link NW_004936588 4,670,866 4,679,888 RGD:9068941
G Ythdc1 YTH domain containing 1 JBrowse link NW_004936582 130,593 161,275 RGD:9068941
G Zmat2 zinc finger matrin-type 2 JBrowse link NW_004936531 9,633,460 9,640,366 RGD:9068941
G Zrsr2 zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2 JBrowse link NW_004936470 5,233,798 5,258,266 RGD:9068941
ncRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Zcchc8 zinc finger CCHC-type containing 8 JBrowse link NW_004936558 2,058,513 2,085,686 RGD:9068941
negative regulation of mRNA polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ccnt1 cyclin T1 JBrowse link NW_004936512 6,567,663 6,588,107 RGD:9068941
G Cdk9 cyclin dependent kinase 9 JBrowse link NW_004936487 15,446,864 15,450,750 RGD:9068941
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component JBrowse link NW_004936528 7,585,937 7,613,022 RGD:9068941
G Nelfe negative elongation factor complex member E JBrowse link NW_004936727 1,589,942 1,596,009 RGD:9068941
G Rnf20 ring finger protein 20 JBrowse link NW_004936524 9,690,611 9,715,579 RGD:9068941
G Rnf40 ring finger protein 40 JBrowse link NW_004936501 13,154,963 13,167,211 RGD:9068941
G Supt5h SPT5 homolog, DSIF elongation factor subunit JBrowse link NW_004936661 2,280,390 2,308,085 RGD:9068941
negative regulation of mRNA splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acin1 apoptotic chromatin condensation inducer 1 JBrowse link NW_004936722 1,252,083 1,264,018 RGD:9068941
G C1qbp complement C1q binding protein JBrowse link NW_004936677 2,371,400 2,376,608 RGD:9068941
G Celf4 CUGBP Elav-like family member 4 JBrowse link NW_004936517 8,010,133 8,010,721 RGD:9068941
G Dyrk1a dual specificity tyrosine phosphorylation regulated kinase 1A JBrowse link NW_004936500 5,317,109 5,423,593 RGD:9068941
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 JBrowse link NW_004936478 2,970,261 2,980,277 RGD:9068941
G Hnrnpk heterogeneous nuclear ribonucleoprotein K JBrowse link NW_004936828 827,660 839,088 RGD:9068941
G Hnrnpl heterogeneous nuclear ribonucleoprotein L JBrowse link NW_004936661 1,793,791 1,806,564 RGD:9068941
G Npm1 nucleophosmin 1 JBrowse link NW_004936609 3,712,628 3,725,635 RGD:9068941
G Pcbp4 poly(rC) binding protein 4 JBrowse link NW_004936529 3,304,171 3,308,422 RGD:9068941
G Ptbp1 polypyrimidine tract binding protein 1 JBrowse link NW_004936588 316,348 326,895 RGD:9068941
G Ptbp3 polypyrimidine tract binding protein 3 JBrowse link NW_004936559 1,091,575 1,186,452 RGD:9068941
G Rbm10 RNA binding motif protein 10 JBrowse link NW_004936502 12,923,890 12,952,179 RGD:9068941
G Rbm42 RNA binding motif protein 42 JBrowse link NW_004936570 676,775 685,415 RGD:9068941
G Rnps1 RNA binding protein with serine rich domain 1 JBrowse link NW_004936694 1,784,396 1,794,269 RGD:9068941
G Sap18 Sin3A associated protein 18 JBrowse link NW_004936720 610,478 616,529 RGD:9068941
G Sfswap splicing factor SWAP JBrowse link NW_004936660 2,055,180 2,121,008 RGD:9068941
G Srsf10 serine and arginine rich splicing factor 10 JBrowse link NW_004936474 9,068,012 9,079,717 RGD:9068941
G Srsf4 serine and arginine rich splicing factor 4 JBrowse link NW_004936474 13,113,191 13,140,956 RGD:9068941
G Srsf6 serine and arginine rich splicing factor 6 JBrowse link NW_004936530 3,086,944 3,092,780 RGD:9068941
G Srsf7 serine and arginine rich splicing factor 7 JBrowse link NW_004936508 12,475,906 12,481,501 RGD:9068941
G Srsf9 serine and arginine rich splicing factor 9 JBrowse link NW_004936668 484,922 491,576 RGD:9068941
G Tra2b transformer 2 beta homolog JBrowse link NW_004936578 3,949,820 3,970,462 RGD:9068941
G U2af2 U2 small nuclear RNA auxiliary factor 2 JBrowse link NW_004936981 176,552 193,798 RGD:9068941
negative regulation of pre-miRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bcdin3d BCDIN3 domain containing RNA methyltransferase JBrowse link NW_004936512 7,516,324 7,521,063 RGD:9068941
G Lin28b lin-28 homolog B JBrowse link NW_004936564 1,646,469 1,768,879 RGD:9068941
negative regulation of primary miRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lin28b lin-28 homolog B JBrowse link NW_004936564 1,646,469 1,768,879 RGD:9068941
G Mecp2 methyl-CpG binding protein 2 JBrowse link NW_004936809 902,938 967,771 RGD:9068941
G Stat3 signal transducer and activator of transcription 3 JBrowse link NW_004936490 17,119,189 17,178,402 RGD:9068941
negative regulation of production of miRNAs involved in gene silencing by miRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Esr1 estrogen receptor 1 JBrowse link NW_004936489 4,616,839 4,887,179 RGD:9068941
G Ncor1 nuclear receptor corepressor 1 JBrowse link NW_004936821 382,756 538,254 RGD:9068941
G Ncor2 nuclear receptor corepressor 2 JBrowse link NW_004936558 658,723 775,263 RGD:9068941
G Ppp3ca protein phosphatase 3 catalytic subunit alpha JBrowse link NW_004936520 1,987,989 2,146,473 RGD:9068941
G Tgfb1 transforming growth factor beta 1 JBrowse link NW_004936661 3,742,080 3,758,266 RGD:9068941
G Tnf tumor necrosis factor JBrowse link NW_004936727 1,936,066 1,937,766 RGD:9068941
G Tp53 tumor protein p53 JBrowse link NW_004936595 919,807 935,367 RGD:9068941
G Zc3h10 zinc finger CCCH-type containing 10 JBrowse link NW_004936646 528,455 534,267 RGD:9068941
G Zc3h12a zinc finger CCCH-type containing 12A JBrowse link NW_004936474 19,714,145 19,722,512 RGD:9068941
G Zmpste24 zinc metallopeptidase STE24 JBrowse link NW_004936474 22,035,059 22,077,846 RGD:9068941
negative regulation of production of siRNA involved in RNA interference term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tert telomerase reverse transcriptase JBrowse link NW_004936815 468,987 492,666 RGD:9068941
negative regulation of RNA splicing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Akt2 AKT serine/threonine kinase 2 JBrowse link NW_004936661 2,652,568 2,694,039 RGD:9068941
G Ptbp1 polypyrimidine tract binding protein 1 JBrowse link NW_004936588 316,348 326,895 RGD:9068941
G Ptbp2 polypyrimidine tract binding protein 2 JBrowse link NW_004936537 2,676,920 2,748,568 RGD:9068941
G Ptbp3 polypyrimidine tract binding protein 3 JBrowse link NW_004936559 1,091,575 1,186,452 RGD:9068941
G Rps13 ribosomal protein S13 JBrowse link NW_004936528 1,973,353 1,976,227 RGD:9068941
G Rps26 ribosomal protein S26 JBrowse link NW_004936646 452,371 454,787 RGD:9068941
G Tmbim6 transmembrane BAX inhibitor motif containing 6 JBrowse link NW_004936512 7,427,926 7,448,700 RGD:9068941
negative regulation of rRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Kat2b lysine acetyltransferase 2B JBrowse link NW_004936473 12,341,545 12,415,637 RGD:9068941
G Shq1 SHQ1, H/ACA ribonucleoprotein assembly factor JBrowse link NW_004936603 3,831,838 3,900,429 RGD:9068941
polyadenylation-dependent snoRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Parn poly(A)-specific ribonuclease JBrowse link NW_004936501 2,666,908 2,810,159 RGD:9068941
positive regulation of mRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ccnb1 cyclin B1 JBrowse link NW_004936480 400,287 407,677 RGD:9068941
G Cdc73 cell division cycle 73 JBrowse link NW_004936638 1,365,457 1,482,497 RGD:9068941
G Dhx36 DEAH-box helicase 36 JBrowse link NW_004936519 1,946,684 1,987,036 RGD:9068941
G LOC101959183 RNA polymerase-associated protein LEO1 JBrowse link NW_004936471 13,753,061 13,783,990 RGD:9068941
G Ncbp1 nuclear cap binding protein subunit 1 JBrowse link NW_004936524 6,429,735 6,465,035 RGD:9068941
G Ncbp2 nuclear cap binding protein subunit 2 JBrowse link NW_004936833 920,683 928,047 RGD:9068941
G Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component JBrowse link NW_004936661 2,236,121 2,241,086 RGD:9068941
positive regulation of mRNA polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cpeb1 cytoplasmic polyadenylation element binding protein 1 JBrowse link NW_004936483 17,216,288 17,296,430 RGD:9068941
G Cpeb3 cytoplasmic polyadenylation element binding protein 3 JBrowse link NW_004936601 2,470,021 2,616,451 RGD:9068941
G Hsf1 heat shock transcription factor 1 JBrowse link NW_004936470 7,927,734 7,950,805 RGD:9068941
G Nudt21 nudix hydrolase 21 JBrowse link NW_004936475 8,739,992 8,759,165 RGD:9068941
positive regulation of mRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adarb1 adenosine deaminase RNA specific B1 JBrowse link NW_004936778 1,056,259 1,137,772 RGD:9068941
positive regulation of mRNA splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Celf3 CUGBP Elav-like family member 3 JBrowse link NW_004936580 1,897,694 1,911,817 RGD:9068941
G Celf4 CUGBP Elav-like family member 4 JBrowse link NW_004936517 8,010,133 8,010,721 RGD:9068941
G Dazap1 DAZ associated protein 1 JBrowse link NW_004936588 730,626 758,074 RGD:9068941
G Eif4a3 eukaryotic translation initiation factor 4A3 JBrowse link NW_004936594 4,148,401 4,160,290 RGD:9068941
G Hmx2 H6 family homeobox 2 JBrowse link NW_004936486 11,789,991 11,792,500 RGD:9068941
G Hspa8 heat shock protein family A (Hsp70) member 8 JBrowse link NW_004936542 7,577,192 7,581,598 RGD:9068941
G Lmntd2 lamin tail domain containing 2 JBrowse link NW_004936888 397,581 403,551 RGD:9068941
G Ncbp1 nuclear cap binding protein subunit 1 JBrowse link NW_004936524 6,429,735 6,465,035 RGD:9068941
G Nup98 nucleoporin 98 and 96 precursor JBrowse link NW_004936498 1,112,724 1,219,790 RGD:9068941
G Obi1 ORC ubiquitin ligase 1 JBrowse link NW_004936511 2,800,466 2,847,896 RGD:9068941
G Prdx6 peroxiredoxin 6 JBrowse link NW_004936481 14,223,422 14,233,634 RGD:9068941
G Prpf19 pre-mRNA processing factor 19 JBrowse link NW_004936581 2,031,894 2,042,294 RGD:9068941
G Sf3b4 splicing factor 3b subunit 4 JBrowse link NW_004936580 260,013 265,057 RGD:9068941
G Slc39a5 solute carrier family 39 member 5 JBrowse link NW_004936646 638,956 649,501 RGD:9068941
G Snrnp70 small nuclear ribonucleoprotein U1 subunit 70 JBrowse link NW_004936664 3,035,679 3,054,577 RGD:9068941
G Snw1 SNW domain containing 1 JBrowse link NW_004936488 6,494,556 6,531,297 RGD:9068941
G Thrap3 thyroid hormone receptor associated protein 3 JBrowse link NW_004936474 18,691,872 18,749,217 RGD:9068941
G Tra2a transformer 2 alpha homolog JBrowse link NW_004936478 622,527 642,529 RGD:9068941
G Tra2b transformer 2 beta homolog JBrowse link NW_004936578 3,949,820 3,970,462 RGD:9068941
G Zfp64 ZFP64 zinc finger protein JBrowse link NW_004936514 3,028,526 3,100,294 RGD:9068941
positive regulation of production of miRNAs involved in gene silencing by miRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bmp4 bone morphogenetic protein 4 JBrowse link NW_004936697 1,054,237 1,061,468 RGD:9068941
G Ddx5 DEAD-box helicase 5 JBrowse link NW_004936541 5,005,211 5,013,439 RGD:9068941
G Egfr epidermal growth factor receptor JBrowse link NW_004936678 365,005 560,546 RGD:9068941
G Lin28a lin-28 homolog A JBrowse link NW_004936474 10,896,153 10,909,247 RGD:9068941
G Map2k1 mitogen-activated protein kinase kinase 1 JBrowse link NW_004936471 26,589,251 26,628,302 RGD:9068941
G Map2k2 mitogen-activated protein kinase kinase 2 JBrowse link NW_004936588 2,338,127 2,377,090 RGD:9068941
G Myocd myocardin JBrowse link NW_004936595 5,256,615 5,356,563 RGD:9068941
G Nr2f1 nuclear receptor subfamily 2 group F member 1 JBrowse link NW_004936523 9,508,204 9,517,266 RGD:9068941
G Ripk1 receptor interacting serine/threonine kinase 1 JBrowse link NW_004936534 9,326,307 9,361,943 RGD:9068941
G Tgfb1 transforming growth factor beta 1 JBrowse link NW_004936661 3,742,080 3,758,266 RGD:9068941
G Tp53 tumor protein p53 JBrowse link NW_004936595 919,807 935,367 RGD:9068941
positive regulation of RNA splicing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dyrk1a dual specificity tyrosine phosphorylation regulated kinase 1A JBrowse link NW_004936500 5,317,109 5,423,593 RGD:9068941
G Ern1 endoplasmic reticulum to nucleus signaling 1 JBrowse link NW_004936541 4,613,197 4,705,911 RGD:9068941
G Habp4 hyaluronan binding protein 4 JBrowse link NW_004936487 402,701 424,399 RGD:9068941
G Hnrnpk heterogeneous nuclear ribonucleoprotein K JBrowse link NW_004936828 827,660 839,088 RGD:9068941
G Hnrnpll heterogeneous nuclear ribonucleoprotein L like JBrowse link NW_004936508 12,653,861 12,680,816 RGD:9068941
G Hspa1a heat shock protein family A (Hsp70) member 1A JBrowse link NW_004936727 1,732,323 1,735,128 RGD:9068941
G Hspa1b heat shock protein family A (Hsp70) member 1B JBrowse link NW_004936727 1,718,952 1,721,691 RGD:9068941
G Khdrbs3 KH RNA binding domain containing, signal transduction associated 3 JBrowse link NW_004936470 14,232,114 14,403,910 RGD:9068941
G Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 JBrowse link NW_004936480 1,188,408 1,273,210 RGD:9068941
G Polr2a RNA polymerase II subunit A JBrowse link NW_004936595 755,585 781,692 RGD:9068941
G Rbm20 RNA binding motif protein 20 JBrowse link NW_004936486 1,472,170 1,652,314 RGD:9068941
G Rbm22 RNA binding motif protein 22 JBrowse link NW_004936504 4,294,010 4,304,669 RGD:9068941
G Setx senataxin JBrowse link NW_004936487 18,858,384 18,945,253 RGD:9068941
G Slc38a2 solute carrier family 38 member 2 JBrowse link NW_004936512 4,543,845 4,557,118 RGD:9068941
G Srsf1 serine and arginine rich splicing factor 1 JBrowse link NW_004936490 5,055,258 5,059,118 RGD:9068941
G Srsf5 serine and arginine rich splicing factor 5 JBrowse link NW_004936495 12,952,610 12,957,640 RGD:9068941
G U2af2 U2 small nuclear RNA auxiliary factor 2 JBrowse link NW_004936981 176,552 193,798 RGD:9068941
G Zpr1 ZPR1 zinc finger JBrowse link NW_004936542 2,058,048 2,067,468 RGD:9068941
positive regulation of rRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bud23 BUD23 rRNA methyltransferase and ribosome maturation factor JBrowse link NW_004936543 2,897,884 2,908,758 RGD:9068941
G Dimt1 DIMT1 rRNA methyltransferase and ribosome maturation factor JBrowse link NW_004936480 6,311,389 6,323,156 RGD:9068941
G Heatr1 HEAT repeat containing 1 JBrowse link NW_004936484 16,310,766 16,355,977 RGD:9068941
G Riok1 RIO kinase 1 JBrowse link NW_004936534 5,184,313 5,220,565 RGD:9068941
G Riok2 RIO kinase 2 JBrowse link NW_004936523 6,293,735 6,313,840 RGD:9068941
G Sirt7 sirtuin 7 JBrowse link NW_004936594 5,418,331 5,425,050 RGD:9068941
G Trmt112 tRNA methyltransferase subunit 11-2 JBrowse link NW_004936599 4,897,394 4,898,618 RGD:9068941
G Utp15 UTP15 small subunit processome component JBrowse link NW_004936549 3,010,676 3,023,362 RGD:9068941
G Wdr43 WD repeat domain 43 JBrowse link NW_004936493 3,871,167 3,914,172 RGD:9068941
G Wdr75 WD repeat domain 75 JBrowse link NW_004936506 8,502,795 8,529,305 RGD:9068941
pre-miRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adar adenosine deaminase RNA specific JBrowse link NW_004936580 4,183,016 4,208,341 RGD:9068941
G Ago2 argonaute RISC catalytic component 2 JBrowse link NW_004936470 10,641,109 10,690,587 RGD:9068941
G Ago4 argonaute RISC component 4 JBrowse link NW_004936474 18,335,536 18,371,398 RGD:9068941
G Dicer1 dicer 1, ribonuclease III JBrowse link NW_004936846 528,768 584,599 RGD:9068941
G Drosha drosha ribonuclease III JBrowse link NW_004936518 9,100,094 9,218,405 RGD:9068941
G Lin28a lin-28 homolog A JBrowse link NW_004936474 10,896,153 10,909,247 RGD:9068941
G Lin28b lin-28 homolog B JBrowse link NW_004936564 1,646,469 1,768,879 RGD:9068941
G Prkra protein activator of interferon induced protein kinase EIF2AK2 JBrowse link NW_004936509 7,653,192 7,668,925 RGD:9068941
G Tarbp2 TARBP2 subunit of RISC loading complex JBrowse link NW_004936512 10,774,793 10,780,041 RGD:9068941
G Tut4 terminal uridylyl transferase 4 JBrowse link NW_004936522 8,468,092 8,560,453 RGD:9068941
G Tut7 terminal uridylyl transferase 7 JBrowse link NW_004936680 1,693,815 1,753,641 RGD:9068941
pre-mRNA cleavage required for polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cpsf6 cleavage and polyadenylation specific factor 6 JBrowse link NW_004936545 7,045,043 7,077,710 RGD:9068941
G Cpsf7 cleavage and polyadenylation specific factor 7 JBrowse link NW_004936581 1,629,078 1,651,147 RGD:9068941
G Ncbp1 nuclear cap binding protein subunit 1 JBrowse link NW_004936524 6,429,735 6,465,035 RGD:9068941
G Ncbp2 nuclear cap binding protein subunit 2 JBrowse link NW_004936833 920,683 928,047 RGD:9068941
G Nudt21 nudix hydrolase 21 JBrowse link NW_004936475 8,739,992 8,759,165 RGD:9068941
G Tut1 terminal uridylyl transferase 1, U6 snRNA-specific JBrowse link NW_004936581 665,751 691,448 RGD:9068941
primary miRNA methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mettl3 methyltransferase like 3 JBrowse link NW_004936880 646,835 661,312 RGD:9068941
primary miRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dgcr8 DGCR8 microprocessor complex subunit JBrowse link NW_004936619 3,977,307 4,014,490 RGD:9068941
G Drosha drosha ribonuclease III JBrowse link NW_004936518 9,100,094 9,218,405 RGD:9068941
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 JBrowse link NW_004936478 2,970,261 2,980,277 RGD:9068941
G Mettl3 methyltransferase like 3 JBrowse link NW_004936880 646,835 661,312 RGD:9068941
G Pus10 pseudouridine synthase 10 JBrowse link NW_004936491 6,439,248 6,530,309 RGD:9068941
G Srrt serrate, RNA effector molecule JBrowse link NW_004936543 843,144 855,491 RGD:9068941
production of miRNAs involved in gene silencing by miRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adar adenosine deaminase RNA specific JBrowse link NW_004936580 4,183,016 4,208,341 RGD:9068941
G Ago2 argonaute RISC catalytic component 2 JBrowse link NW_004936470 10,641,109 10,690,587 RGD:9068941
G Ago4 argonaute RISC component 4 JBrowse link NW_004936474 18,335,536 18,371,398 RGD:9068941
G Dicer1 dicer 1, ribonuclease III JBrowse link NW_004936846 528,768 584,599 RGD:9068941
G Prkra protein activator of interferon induced protein kinase EIF2AK2 JBrowse link NW_004936509 7,653,192 7,668,925 RGD:9068941
G Pum1 pumilio RNA binding family member 1 JBrowse link NW_004936474 14,243,325 14,363,461 RGD:9068941
G Pum2 pumilio RNA binding family member 2 JBrowse link NW_004936493 11,067,318 11,154,133 RGD:9068941
G Rbm3 RNA binding motif protein 3 JBrowse link NW_004936721 547,751 551,273 RGD:9068941
G Snip1 Smad nuclear interacting protein 1 JBrowse link NW_004936474 19,760,653 19,778,224 RGD:9068941
G Spout1 SPOUT domain containing methyltransferase 1 JBrowse link NW_004936487 16,284,921 16,291,572 RGD:9068941
G Tarbp2 TARBP2 subunit of RISC loading complex JBrowse link NW_004936512 10,774,793 10,780,041 RGD:9068941
G Trim71 tripartite motif containing 71 JBrowse link NW_004936473 23,223,984 23,290,177 RGD:9068941
G Zc3h7a zinc finger CCCH-type containing 7A JBrowse link NW_004936530 9,558,395 9,581,337 RGD:9068941
G Zc3h7b zinc finger CCCH-type containing 7B JBrowse link NW_004936492 532,883 584,142 RGD:9068941
production of siRNA involved in RNA interference term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dicer1 dicer 1, ribonuclease III JBrowse link NW_004936846 528,768 584,599 RGD:9068941
G Prkra protein activator of interferon induced protein kinase EIF2AK2 JBrowse link NW_004936509 7,653,192 7,668,925 RGD:9068941
G Tarbp2 TARBP2 subunit of RISC loading complex JBrowse link NW_004936512 10,774,793 10,780,041 RGD:9068941
G Tert telomerase reverse transcriptase JBrowse link NW_004936815 468,987 492,666 RGD:9068941
recruitment of mRNA capping enzyme to RNA polymerase II holoenzyme complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ramac RNA guanine-7 methyltransferase activating subunit JBrowse link NW_004936483 17,634,873 17,643,740 RGD:9068941
regulation of alternative mRNA splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Celf3 CUGBP Elav-like family member 3 JBrowse link NW_004936580 1,897,694 1,911,817 RGD:9068941
G Celf4 CUGBP Elav-like family member 4 JBrowse link NW_004936517 8,010,133 8,010,721 RGD:9068941
G Celf5 CUGBP Elav-like family member 5 JBrowse link NW_004936588 1,864,793 1,887,082 RGD:9068941
G Celf6 CUGBP Elav-like family member 6 JBrowse link NW_004936471 31,668,520 31,700,581 RGD:9068941
G Ddx17 DEAD-box helicase 17 JBrowse link NW_004936492 2,806,630 2,826,071 RGD:9068941
G Ddx5 DEAD-box helicase 5 JBrowse link NW_004936541 5,005,211 5,013,439 RGD:9068941
G Dyrk1a dual specificity tyrosine phosphorylation regulated kinase 1A JBrowse link NW_004936500 5,317,109 5,423,593 RGD:9068941
G Fam172a family with sequence similarity 172 member A JBrowse link NW_004936523 9,037,516 9,485,257 RGD:9068941
G Fmr1 FMRP translational regulator 1 JBrowse link NW_004936513 1,290,038 1,327,850 RGD:9068941
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 JBrowse link NW_004936512 11,481,017 11,487,737 RGD:9068941
G Hnrnpl heterogeneous nuclear ribonucleoprotein L JBrowse link NW_004936661 1,793,791 1,806,564 RGD:9068941
G Hnrnpu heterogeneous nuclear ribonucleoprotein U JBrowse link NW_004936526 6,014,745 6,022,213 RGD:9068941
G Khdrbs1 KH RNA binding domain containing, signal transduction associated 1 JBrowse link NW_004936474 15,088,815 15,131,048 RGD:9068941
G Khdrbs3 KH RNA binding domain containing, signal transduction associated 3 JBrowse link NW_004936470 14,232,114 14,403,910 RGD:9068941
G Magoh mago homolog, exon junction complex subunit JBrowse link NW_004936522 7,823,644 7,832,170 RGD:9068941
G Mbnl2 muscleblind like splicing regulator 2 JBrowse link NW_004936472 12,705,804 12,856,058 RGD:9068941
G Myod1 myogenic differentiation 1 JBrowse link NW_004936528 1,407,187 1,409,683 RGD:9068941
G Nsrp1 nuclear speckle splicing regulatory protein 1 JBrowse link NW_004936538 6,138,993 6,184,730 RGD:9068941
G Ptbp1 polypyrimidine tract binding protein 1 JBrowse link NW_004936588 316,348 326,895 RGD:9068941
G Rbfox1 RNA binding fox-1 homolog 1 JBrowse link NW_004936530 5,259,612 6,843,668 RGD:9068941
G Rbfox2 RNA binding fox-1 homolog 2 JBrowse link NW_004936492 4,624,013 4,826,715 RGD:9068941
G Rbfox3 RNA binding fox-1 homolog 3 JBrowse link NW_004936594 3,393,675 3,744,755 RGD:9068941
G Rbm11 RNA binding motif protein 11 JBrowse link NW_004936505 7,246,854 7,256,763 RGD:9068941
G Rbm15 RNA binding motif protein 15 JBrowse link NW_004936704 1,779,981 1,787,339 RGD:9068941
G Rbm15b RNA binding motif protein 15B JBrowse link NW_004936529 2,780,110 2,782,775 RGD:9068941
G Rbm24 RNA binding motif protein 24 JBrowse link NW_004936552 3,291,727 3,304,332 RGD:9068941
G Rbm25 RNA binding motif protein 25 JBrowse link NW_004936488 2,395,451 2,458,367 RGD:9068941
G Rbm5 RNA binding motif protein 5 JBrowse link NW_004936529 1,639,919 1,672,143 RGD:9068941
G Rbm8a RNA binding motif protein 8A JBrowse link NW_004936867 666,208 667,851 RGD:9068941
G Rbmx RNA binding motif protein X-linked JBrowse link NW_004936513 10,429,862 10,442,509 RGD:9068941
G Rest RE1 silencing transcription factor JBrowse link NW_004936482 19,018,454 19,040,438 RGD:9068941
G Rnps1 RNA binding protein with serine rich domain 1 JBrowse link NW_004936694 1,784,396 1,794,269 RGD:9068941
G Sap18 Sin3A associated protein 18 JBrowse link NW_004936720 610,478 616,529 RGD:9068941
G Srrm4 serine/arginine repetitive matrix 4 JBrowse link NW_004936668 1,523,232 1,668,591 RGD:9068941
G Srsf12 serine and arginine rich splicing factor 12 JBrowse link NW_004936510 3,077,940 3,095,985 RGD:9068941
G Srsf2 serine and arginine rich splicing factor 2 JBrowse link NW_004936594 1,775,412 1,778,389 RGD:9068941
G Srsf6 serine and arginine rich splicing factor 6 JBrowse link NW_004936530 3,086,944 3,092,780 RGD:9068941
G Thrap3 thyroid hormone receptor associated protein 3 JBrowse link NW_004936474 18,691,872 18,749,217 RGD:9068941
G Tra2b transformer 2 beta homolog JBrowse link NW_004936578 3,949,820 3,970,462 RGD:9068941
G Wtap WT1 associated protein JBrowse link NW_004936489 11,222,513 11,249,432 RGD:9068941
G Zbtb7a zinc finger and BTB domain containing 7A JBrowse link NW_004936588 2,310,975 2,321,790 RGD:9068941
regulation of mRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ahcyl1 adenosylhomocysteinase like 1 JBrowse link NW_004936704 1,438,781 1,477,541 RGD:9068941
G Papola poly(A) polymerase alpha JBrowse link NW_004936604 770,050 833,950 RGD:9068941
G Zfp36l1 ZFP36 ring finger protein like 1 JBrowse link NW_004936495 12,045,679 12,050,737 RGD:9068941
regulation of mRNA polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ncbp1 nuclear cap binding protein subunit 1 JBrowse link NW_004936524 6,429,735 6,465,035 RGD:9068941
G Ncbp2 nuclear cap binding protein subunit 2 JBrowse link NW_004936833 920,683 928,047 RGD:9068941
G Snrpa small nuclear ribonucleoprotein polypeptide A JBrowse link NW_004936661 3,030,104 3,041,877 RGD:9068941
G Zc3h3 zinc finger CCCH-type containing 3 JBrowse link NW_004936470 8,591,564 8,675,505 RGD:9068941
regulation of mRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dhx9 DExH-box helicase 9 JBrowse link NW_004936481 6,896,487 6,934,938 RGD:9068941
G Iws1 interacts with SUPT6H, CTD assembly factor 1 JBrowse link NW_004936469 43,766,699 43,805,919 RGD:9068941
G Nova1 NOVA alternative splicing regulator 1 JBrowse link NW_004936494 1,720,030 1,853,177 RGD:9068941
G Ptcd2 pentatricopeptide repeat domain 2 JBrowse link NW_004936549 4,135,854 4,164,991 RGD:9068941
G Safb scaffold attachment factor B JBrowse link NW_004936588 3,225,315 3,253,689 RGD:9068941
G Srpk1 SRSF protein kinase 1 JBrowse link NW_004936476 23,407,226 23,476,203 RGD:9068941
G Supt6h SPT6 homolog, histone chaperone and transcription elongation factor JBrowse link NW_004936538 4,878,645 4,910,613 RGD:9068941
regulation of mRNA splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase JBrowse link NW_004936594 1,760,924 1,771,022 RGD:9068941
G Khdrbs1 KH RNA binding domain containing, signal transduction associated 1 JBrowse link NW_004936474 15,088,815 15,131,048 RGD:9068941
G Khdrbs2 KH RNA binding domain containing, signal transduction associated 2 JBrowse link NW_004936476 2,469,396 3,001,997 RGD:9068941
G Khdrbs3 KH RNA binding domain containing, signal transduction associated 3 JBrowse link NW_004936470 14,232,114 14,403,910 RGD:9068941
G Larp7 La ribonucleoprotein 7, transcriptional regulator JBrowse link NW_004936563 3,455,205 3,474,955 RGD:9068941
G Mettl16 methyltransferase like 16 JBrowse link NW_004936538 8,470,057 8,541,620 RGD:9068941
G Rbm23 RNA binding motif protein 23 JBrowse link NW_004936722 1,389,534 1,402,487 RGD:9068941
G Rbm39 RNA binding motif protein 39 JBrowse link NW_004936561 5,099,052 5,149,947 RGD:9068941
G Son SON DNA and RNA binding protein JBrowse link NW_004936500 8,721,155 8,752,906 RGD:9068941
G Srsf10 serine and arginine rich splicing factor 10 JBrowse link NW_004936474 9,068,012 9,079,717 RGD:9068941
G Srsf3 serine and arginine rich splicing factor 3 JBrowse link NW_004936476 22,790,411 22,799,498 RGD:9068941
G Tia1 TIA1 cytotoxic granule associated RNA binding protein JBrowse link NW_004936491 14,381,107 14,411,931 RGD:9068941
G Ythdc1 YTH domain containing 1 JBrowse link NW_004936582 130,593 161,275 RGD:9068941
regulation of production of miRNAs involved in gene silencing by miRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tarbp2 TARBP2 subunit of RISC loading complex JBrowse link NW_004936512 10,774,793 10,780,041 RGD:9068941
regulation of RNA splicing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aff2 AF4/FMR2 family member 2 JBrowse link NW_004936513 414,839 893,670 RGD:9068941
G Ahnak AHNAK nucleoprotein JBrowse link NW_004936581 702,579 792,762 RGD:9068941
G Akap17a A-kinase anchoring protein 17A JBrowse link NW_004936644 3,716,622 3,727,186 RGD:9068941
G Brdt bromodomain testis associated JBrowse link NW_004936537 7,040,993 7,104,245 RGD:9068941
G Cdk12 cyclin dependent kinase 12 JBrowse link NW_004936490 14,674,783 14,759,433 RGD:9068941
G Celf1 CUGBP Elav-like family member 1 JBrowse link NW_004936562 1,699,774 1,785,285 RGD:9068941
G Clk1 CDC like kinase 1 JBrowse link NW_004936726 170,763 178,897 RGD:9068941
G Clk2 CDC like kinase 2 JBrowse link NW_004936580 4,746,276 4,758,236 RGD:9068941
G Clk3 CDC like kinase 3 JBrowse link NW_004936471 33,600,909 33,615,186 RGD:9068941
G Clk4 CDC like kinase 4 JBrowse link NW_004936647 62,478 83,947 RGD:9068941
G Esrp1 epithelial splicing regulatory protein 1 JBrowse link NW_004936544 7,633,266 7,690,624 RGD:9068941
G Esrp2 epithelial splicing regulatory protein 2 JBrowse link NW_004936475 18,557,840 18,564,461 RGD:9068941
G Fastk Fas activated serine/threonine kinase JBrowse link NW_004936527 6,499,991 6,504,214 RGD:9068941
G Fus FUS RNA binding protein JBrowse link NW_004936501 13,529,732 13,541,102 RGD:9068941
G Hnrnpf heterogeneous nuclear ribonucleoprotein F JBrowse link NW_004936617 3,241,299 3,263,318 RGD:9068941
G Hnrnph1 heterogeneous nuclear ribonucleoprotein H1 JBrowse link NW_004936739 1,135,282 1,144,643 RGD:9068941
G Mbnl1 muscleblind like splicing regulator 1 JBrowse link NW_004936519 419,332 580,706 RGD:9068941
G Mbnl2 muscleblind like splicing regulator 2 JBrowse link NW_004936472 12,705,804 12,856,058 RGD:9068941
G Mbnl3 muscleblind like splicing regulator 3 JBrowse link NW_004936691 2,460,409 2,526,179 RGD:9068941
G Mettl4 methyltransferase like 4 JBrowse link NW_004936672 1,911,109 1,940,897 RGD:9068941
G Myod1 myogenic differentiation 1 JBrowse link NW_004936528 1,407,187 1,409,683 RGD:9068941
G Pqbp1 polyglutamine binding protein 1 JBrowse link NW_004936721 825,171 830,010 RGD:9068941
G Prx periaxin JBrowse link NW_004936661 2,772,446 2,783,120 RGD:9068941
G Rbm38 RNA binding motif protein 38 JBrowse link NW_004936530 227,266 249,285 RGD:9068941
G Rrp1b ribosomal RNA processing 1B JBrowse link NW_004936500 574,445 600,555 RGD:9068941
G Snrnp70 small nuclear ribonucleoprotein U1 subunit 70 JBrowse link NW_004936664 3,035,679 3,054,577 RGD:9068941
G Son SON DNA and RNA binding protein JBrowse link NW_004936500 8,721,155 8,752,906 RGD:9068941
G Srrm4 serine/arginine repetitive matrix 4 JBrowse link NW_004936668 1,523,232 1,668,591 RGD:9068941
G Tra2b transformer 2 beta homolog JBrowse link NW_004936578 3,949,820 3,970,462 RGD:9068941
G Znf326 zinc finger protein 326 JBrowse link NW_004936537 8,760,311 8,797,869 RGD:9068941
regulation of rRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Usp36 ubiquitin specific peptidase 36 JBrowse link NW_004936594 3,194,842 3,228,701 RGD:9068941
RNA 3' uridylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lin28a lin-28 homolog A JBrowse link NW_004936474 10,896,153 10,909,247 RGD:9068941
G Tent4a terminal nucleotidyltransferase 4A JBrowse link NW_004936634 667,170 706,901 RGD:9068941
G Tent4b terminal nucleotidyltransferase 4B JBrowse link NW_004936475 3,266,763 3,328,209 RGD:9068941
G Tut4 terminal uridylyl transferase 4 JBrowse link NW_004936522 8,468,092 8,560,453 RGD:9068941
G Tut7 terminal uridylyl transferase 7 JBrowse link NW_004936680 1,693,815 1,753,641 RGD:9068941
RNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lin28a lin-28 homolog A JBrowse link NW_004936474 10,896,153 10,909,247 RGD:9068941
G Lin28b lin-28 homolog B JBrowse link NW_004936564 1,646,469 1,768,879 RGD:9068941
G Tut4 terminal uridylyl transferase 4 JBrowse link NW_004936522 8,468,092 8,560,453 RGD:9068941
G Tut7 terminal uridylyl transferase 7 JBrowse link NW_004936680 1,693,815 1,753,641 RGD:9068941
RNA 5'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Piwil2 piwi like RNA-mediated gene silencing 2 JBrowse link NW_004936555 6,078,681 6,133,184 RGD:9068941
RNA splicing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ccar2 cell cycle and apoptosis regulator 2 JBrowse link NW_004936555 6,341,455 6,356,677 RGD:9068941
G Cdk12 cyclin dependent kinase 12 JBrowse link NW_004936490 14,674,783 14,759,433 RGD:9068941
G Celf3 CUGBP Elav-like family member 3 JBrowse link NW_004936580 1,897,694 1,911,817 RGD:9068941
G Ddx39b DExD-box helicase 39B JBrowse link NW_004936727 1,968,032 1,980,789 RGD:9068941
G Ddx47 DEAD-box helicase 47 JBrowse link NW_004936587 4,482,883 4,496,429 RGD:9068941
G Fus FUS RNA binding protein JBrowse link NW_004936501 13,529,732 13,541,102 RGD:9068941
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 JBrowse link NW_004936512 11,481,017 11,487,737 RGD:9068941
G Ivns1abp influenza virus NS1A binding protein JBrowse link NW_004936481 4,915,516 4,935,130 RGD:9068941
G Luc7l3 LUC7 like 3 pre-mRNA splicing factor JBrowse link NW_004936490 10,980,398 11,011,671 RGD:9068941
G Mbnl1 muscleblind like splicing regulator 1 JBrowse link NW_004936519 419,332 580,706 RGD:9068941
G Rsrc1 arginine and serine rich coiled-coil 1 JBrowse link NW_004936519 4,822,587 5,126,203 RGD:9068941
G Scaf11 SR-related CTD associated factor 11 JBrowse link NW_004936512 4,209,231 4,286,227 RGD:9068941
G Scnm1 sodium channel modifier 1 JBrowse link NW_004936580 1,370,944 1,374,671 RGD:9068941
G Snrpf small nuclear ribonucleoprotein polypeptide F JBrowse link NW_004936507 11,973,818 11,980,370 RGD:9068941
G Srpk2 SRSF protein kinase 2 JBrowse link NW_004936479 18,541,167 18,675,039 RGD:9068941
G Srsf1 serine and arginine rich splicing factor 1 JBrowse link NW_004936490 5,055,258 5,059,118 RGD:9068941
G Srsf7 serine and arginine rich splicing factor 7 JBrowse link NW_004936508 12,475,906 12,481,501 RGD:9068941
G Taf15 TATA-box binding protein associated factor 15 JBrowse link NW_004936490 199,226 230,190 RGD:9068941
G Tardbp TAR DNA binding protein JBrowse link NW_004936474 90,813 103,713 RGD:9068941
G Tcerg1 transcription elongation regulator 1 JBrowse link NW_004936504 8,182,126 8,247,680 RGD:9068941
G U2af2 U2 small nuclear RNA auxiliary factor 2 JBrowse link NW_004936981 176,552 193,798 RGD:9068941
G Usb1 U6 snRNA biogenesis phosphodiesterase 1 JBrowse link NW_004936475 9,933,607 9,947,910 RGD:9068941
G Wbp11 WW domain binding protein 11 JBrowse link NW_004936587 2,673,206 2,687,298 RGD:9068941
G Wt1 WT1 transcription factor JBrowse link NW_004936533 5,411,949 5,459,693 RGD:9068941
RNA splicing, via transesterification reactions term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dbr1 debranching RNA lariats 1 JBrowse link NW_004936540 504,638 515,913 RGD:9068941
G Scaf11 SR-related CTD associated factor 11 JBrowse link NW_004936512 4,209,231 4,286,227 RGD:9068941
G Slu7 SLU7 homolog, splicing factor JBrowse link NW_004936515 3,172,962 3,179,915 RGD:9068941
G Srsf10 serine and arginine rich splicing factor 10 JBrowse link NW_004936474 9,068,012 9,079,717 RGD:9068941
G Wdr83 WD repeat domain 83 JBrowse link NW_004936659 1,796,030 1,803,714 RGD:9068941
rRNA (guanine-N7)-methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bud23 BUD23 rRNA methyltransferase and ribosome maturation factor JBrowse link NW_004936543 2,897,884 2,908,758 RGD:9068941
G Trmt112 tRNA methyltransferase subunit 11-2 JBrowse link NW_004936599 4,897,394 4,898,618 RGD:9068941
rRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Eri1 exoribonuclease 1 JBrowse link NW_004936573 1,448,325 1,474,753 RGD:9068941
rRNA base methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nsun5 NOP2/Sun RNA methyltransferase 5 JBrowse link NW_004936543 2,618,097 2,624,599 RGD:9068941
rRNA methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dimt1 DIMT1 rRNA methyltransferase and ribosome maturation factor JBrowse link NW_004936480 6,311,389 6,323,156 RGD:9068941
G Fbl fibrillarin JBrowse link NW_004936661 2,444,985 2,455,423 RGD:9068941
G Mettl5 methyltransferase like 5 JBrowse link NW_004936509 295,441 306,154 RGD:9068941
G Nsun4 NOP2/Sun RNA methyltransferase 4 JBrowse link NW_004936474 27,356,133 27,385,710 RGD:9068941
G Trmt112 tRNA methyltransferase subunit 11-2 JBrowse link NW_004936599 4,897,394 4,898,618 RGD:9068941
G Zcchc4 zinc finger CCHC-type containing 4 JBrowse link NW_004936477 4,173,666 4,225,064 RGD:9068941
rRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bop1 BOP1 ribosomal biogenesis factor JBrowse link NW_004936470 7,950,952 7,977,186 RGD:9068941
G Ddx27 DEAD-box helicase 27 JBrowse link NW_004936514 4,992,028 5,009,516 RGD:9068941
G Ddx47 DEAD-box helicase 47 JBrowse link NW_004936587 4,482,883 4,496,429 RGD:9068941
G Exosc3 exosome component 3 JBrowse link NW_004936524 5,580,855 5,586,170 RGD:9068941
G Imp3 IMP U3 small nucleolar ribonucleoprotein 3 JBrowse link NW_004936471 34,405,968 34,407,044 RGD:9068941
G Lyar Ly1 antibody reactive JBrowse link NW_004936477 16,934,401 16,958,722 RGD:9068941
G Mtrex Mtr4 exosome RNA helicase JBrowse link NW_004936480 12,357,637 12,458,728 RGD:9068941
G Nol8 nucleolar protein 8 JBrowse link NW_004936487 1,950,878 1,977,230 RGD:9068941
G Npm3 nucleophosmin/nucleoplasmin 3 JBrowse link NW_004936600 3,997,549 3,999,620 RGD:9068941
G Nvl nuclear VCP like JBrowse link NW_004936526 1,274,760 1,381,997 RGD:9068941
G Pes1 pescadillo ribosomal biogenesis factor 1 JBrowse link NW_004936904 125,922 140,559 RGD:9068941
G Pin4 peptidylprolyl cis/trans isomerase, NIMA-interacting 4 JBrowse link NW_004936959 36,374 48,480 RGD:9068941
G Rnasel ribonuclease L JBrowse link NW_004936481 7,165,400 7,177,342 RGD:9068941
G Rpl11 ribosomal protein L11 JBrowse link NW_004936474 8,855,782 8,858,287 RGD:9068941
G Rpl14 ribosomal protein L14 JBrowse link NW_004936473 29,402,874 29,406,065 RGD:9068941
G Rpl26 ribosomal protein L26 JBrowse link NW_004936595 1,603,913 1,609,125 RGD:9068941
G Rpl27 ribosomal protein L27 JBrowse link NW_004936490 17,696,911 17,699,844 RGD:9068941
G Rpl35a ribosomal protein L35a JBrowse link NW_004936784 167,623 171,962 RGD:9068941
G Rpl5 ribosomal protein L5 JBrowse link NW_004936537 6,341,961 6,344,831 RGD:9068941
G Rpl7 ribosomal protein L7 JBrowse link NW_004936648 2,055,396 2,058,664 RGD:9068941
G Rps15 ribosomal protein S15 JBrowse link NW_004936588 762,153 763,405 RGD:9068941
G Rps16 ribosomal protein S16 JBrowse link NW_004936661 2,271,747 2,274,769 RGD:9068941
G Rps17 ribosomal protein S17 JBrowse link NW_004936483 17,211,129 17,214,509 RGD:9068941
G Rps19 ribosomal protein S19 JBrowse link NW_004936706 568,443 575,973 RGD:9068941
G Rps24 ribosomal protein S24 JBrowse link NW_004936521 1,562,013 1,568,280 RGD:9068941
G Rps27 ribosomal protein S27 JBrowse link NW_004936580 3,740,088 3,741,343 RGD:9068941
G Rps28 ribosomal protein S28 JBrowse link NW_004936588 5,154,614 5,155,522 RGD:9068941
G Rps6 ribosomal protein S6 JBrowse link NW_004936652 1,252,986 1,255,987 RGD:9068941
G Rps7 ribosomal protein S7 JBrowse link NW_004936532 1,734,993 1,740,202 RGD:9068941
G Rrp36 ribosomal RNA processing 36 JBrowse link NW_004936476 16,906,156 16,913,196 RGD:9068941
G Rrp9 ribosomal RNA processing 9, U3 small nucleolar RNA binding protein JBrowse link NW_004936529 3,281,991 3,291,049 RGD:9068941
G Sbds SBDS ribosome maturation factor JBrowse link NW_004936543 7,324,748 7,329,774 RGD:9068941
G Utp20 UTP20 small subunit processome component JBrowse link NW_004936492 12,598,178 12,693,279 RGD:9068941
G Wdr55 WD repeat domain 55 JBrowse link NW_004936531 9,603,391 9,607,598 RGD:9068941
G Wdr74 WD repeat domain 74 JBrowse link NW_004936581 456,354 461,610 RGD:9068941
rRNA pseudouridine synthesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dkc1 dyskerin pseudouridine synthase 1 JBrowse link NW_004936927 134,770 144,057 RGD:9068941
snoRNA guided rRNA pseudouridine synthesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dkc1 dyskerin pseudouridine synthase 1 JBrowse link NW_004936927 134,770 144,057 RGD:9068941
G Gar1 GAR1 ribonucleoprotein JBrowse link NW_004936563 1,006,475 1,014,808 RGD:9068941
G Nhp2 NHP2 ribonucleoprotein JBrowse link NW_004936647 520,542 525,226 RGD:9068941
G Nop10 NOP10 ribonucleoprotein JBrowse link NW_004936673 2,829,599 2,830,407 RGD:9068941
snoRNA polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tent4b terminal nucleotidyltransferase 4B JBrowse link NW_004936475 3,266,763 3,328,209 RGD:9068941
snRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Toe1 target of EGR1, exonuclease JBrowse link NW_004936474 26,492,656 26,496,722 RGD:9068941
snRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ints1 integrator complex subunit 1 JBrowse link NW_004936754 1,597,574 1,626,578 RGD:9068941
G Ints10 integrator complex subunit 10 JBrowse link NW_004936555 3,985,363 4,018,421 RGD:9068941
G Ints11 integrator complex subunit 11 JBrowse link NW_004936737 1,820,472 1,833,301 RGD:9068941
G Ints12 integrator complex subunit 12 JBrowse link NW_004936752 74,918 83,037 RGD:9068941
G Ints2 integrator complex subunit 2 JBrowse link NW_004936490 3,141,258 3,196,257 RGD:9068941
G Ints3 integrator complex subunit 3 JBrowse link NW_004936580 3,511,364 3,553,441 RGD:9068941
G Ints4 integrator complex subunit 4 JBrowse link NW_004936498 6,470,218 6,582,011 RGD:9068941
G Ints5 integrator complex subunit 5 JBrowse link NW_004936581 607,253 613,080 RGD:9068941
G Ints6 integrator complex subunit 6 JBrowse link NW_004936565 4,198,659 4,282,443 RGD:9068941
G Ints7 integrator complex subunit 7 JBrowse link NW_004936557 1,389,728 1,456,397 RGD:9068941
G Ints8 integrator complex subunit 8 JBrowse link NW_004936544 7,784,093 7,839,646 RGD:9068941
G Ints9 integrator complex subunit 9 JBrowse link NW_004936675 1,489,833 1,578,499 RGD:9068941
G Tut1 terminal uridylyl transferase 1, U6 snRNA-specific JBrowse link NW_004936581 665,751 691,448 RGD:9068941
spliceosomal complex assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Crnkl1 crooked neck pre-mRNA splicing factor 1 JBrowse link NW_004936485 328,077 351,323 RGD:9068941
G Ddx39b DExD-box helicase 39B JBrowse link NW_004936727 1,968,032 1,980,789 RGD:9068941
G Gcfc2 GC-rich sequence DNA-binding factor 2 JBrowse link NW_004936556 1,819,656 1,865,858 RGD:9068941
G Ncbp1 nuclear cap binding protein subunit 1 JBrowse link NW_004936524 6,429,735 6,465,035 RGD:9068941
G Prpf19 pre-mRNA processing factor 19 JBrowse link NW_004936581 2,031,894 2,042,294 RGD:9068941
G Rbm5 RNA binding motif protein 5 JBrowse link NW_004936529 1,639,919 1,672,143 RGD:9068941
G Scaf11 SR-related CTD associated factor 11 JBrowse link NW_004936512 4,209,231 4,286,227 RGD:9068941
G Srpk2 SRSF protein kinase 2 JBrowse link NW_004936479 18,541,167 18,675,039 RGD:9068941
G Usp39 ubiquitin specific peptidase 39 JBrowse link NW_004936712 1,625,429 1,661,561 RGD:9068941
G Zrsr2 zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2 JBrowse link NW_004936470 5,233,798 5,258,266 RGD:9068941
spliceosomal complex disassembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tfip11 tuftelin interacting protein 11 JBrowse link NW_004936657 1,112,662 1,128,510 RGD:9068941
spliceosomal snRNP assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Clns1a chloride nucleotide-sensitive channel 1A JBrowse link NW_004936498 6,239,866 6,265,743 RGD:9068941
G Ddx20 DEAD-box helicase 20 JBrowse link NW_004936690 400,563 413,488 RGD:9068941
G Gemin2 gem nuclear organelle associated protein 2 JBrowse link NW_004936494 12,717,358 12,737,019 RGD:9068941
G Gemin4 gem nuclear organelle associated protein 4 JBrowse link NW_004936538 7,033,354 7,040,178 RGD:9068941
G Gemin5 gem nuclear organelle associated protein 5 JBrowse link NW_004936515 7,923,113 7,971,507 RGD:9068941
G Gemin6 gem nuclear organelle associated protein 6 JBrowse link NW_004936508 12,441,742 12,447,597 RGD:9068941
G Gemin7 gem nuclear organelle associated protein 7 JBrowse link NW_004936706 1,629,738 1,638,997 RGD:9068941
G Gemin8 gem nuclear organelle associated protein 8 JBrowse link NW_004936470 3,553,462 3,576,281 RGD:9068941
G Prmt5 protein arginine methyltransferase 5 JBrowse link NW_004936722 1,379,515 1,388,538 RGD:9068941
G Prmt7 protein arginine methyltransferase 7 JBrowse link NW_004936475 18,632,022 18,667,515 RGD:9068941
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein JBrowse link NW_004936769 450,919 490,938 RGD:9068941
G Snrpb small nuclear ribonucleoprotein polypeptides B and B1 JBrowse link NW_004936485 16,142,231 16,161,761 RGD:9068941
G Snrpc small nuclear ribonucleoprotein polypeptide C JBrowse link NW_004936476 24,371,268 24,389,355 RGD:9068941
G Snrpd1 small nuclear ribonucleoprotein D1 polypeptide JBrowse link NW_004936550 1,323,351 1,335,074 RGD:9068941
G Snrpd2 small nuclear ribonucleoprotein D2 polypeptide JBrowse link NW_004936706 2,065,315 2,068,709 RGD:9068941
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide JBrowse link NW_004936619 728,759 744,367 RGD:9068941
G Snrpe small nuclear ribonucleoprotein polypeptide E JBrowse link NW_004936567 849,300 855,214 RGD:9068941
G Snrpf small nuclear ribonucleoprotein polypeptide F JBrowse link NW_004936507 11,973,818 11,980,370 RGD:9068941
G Snrpg small nuclear ribonucleoprotein polypeptide G JBrowse link NW_004936491 14,442,904 14,450,717 RGD:9068941
G Strap serine/threonine kinase receptor associated protein JBrowse link NW_004936587 1,679,570 1,700,610 RGD:9068941
G Tdrd6 tudor domain containing 6 JBrowse link NW_004936476 13,646,678 13,660,891 RGD:9068941
spliceosomal tri-snRNP complex assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link NW_004936727 1,746,072 1,751,944 RGD:9068941
G Prpf19 pre-mRNA processing factor 19 JBrowse link NW_004936581 2,031,894 2,042,294 RGD:9068941
G Prpf3 pre-mRNA processing factor 3 JBrowse link NW_004936580 604,709 632,788 RGD:9068941
G Prpf31 pre-mRNA processing factor 31 JBrowse link NW_004936994 239,688 252,269 RGD:9068941
G Prpf6 pre-mRNA processing factor 6 JBrowse link NW_004936514 11,175,410 11,220,928 RGD:9068941
G Prpf8 pre-mRNA processing factor 8 JBrowse link NW_004936538 7,780,022 7,814,575 RGD:9068941
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein JBrowse link NW_004936769 450,919 490,938 RGD:9068941
G Usp4 ubiquitin specific peptidase 4 JBrowse link NW_004936529 941,042 989,781 RGD:9068941
tRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ptcd1 pentatricopeptide repeat domain 1 JBrowse link NW_004936750 1,684,326 1,699,333 RGD:9068941
G Ssb small RNA binding exonuclease protection factor La JBrowse link NW_004936509 286,397 295,779 RGD:9068941
tRNA 3'-terminal CCA addition term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Trnt1 tRNA nucleotidyl transferase 1 JBrowse link NW_004936577 2,814,464 2,834,068 RGD:9068941
tRNA 5'-leader removal term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pop1 POP1 homolog, ribonuclease P/MRP subunit JBrowse link NW_004936470 44,676,798 44,710,397 RGD:9068941
G Pop4 POP4 homolog, ribonuclease P/MRP subunit JBrowse link NW_004936570 5,704,692 5,714,666 RGD:9068941
G Pop5 POP5 homolog, ribonuclease P/MRP subunit JBrowse link NW_004936668 385,945 388,688 RGD:9068941
G Pop7 POP7 homolog, ribonuclease P/MRP subunit JBrowse link NW_004936543 725,338 732,707 RGD:9068941
G Rpp14 ribonuclease P/MRP subunit p14 JBrowse link NW_004936473 2,670,918 2,678,629 RGD:9068941
G Rpp21 ribonuclease P/MRP subunit p21 JBrowse link NW_004936837 105,369 107,747 RGD:9068941
G Rpp25 ribonuclease P and MRP subunit p25 JBrowse link NW_004936471 33,903,275 33,905,766 RGD:9068941
G Rpp30 ribonuclease P/MRP subunit p30 JBrowse link NW_004936601 3,520,066 3,549,189 RGD:9068941
G Rpp38 ribonuclease P/MRP subunit p38 JBrowse link NW_004936574 5,648,696 5,653,030 RGD:9068941
G Rpp40 ribonuclease P/MRP subunit p40 JBrowse link NW_004936534 7,471,209 7,480,457 RGD:9068941
G Ssb small RNA binding exonuclease protection factor La JBrowse link NW_004936509 286,397 295,779 RGD:9068941
tRNA C5-cytosine methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nsun6 NOP2/Sun RNA methyltransferase 6 JBrowse link NW_004936520 8,909,509 8,950,960 RGD:9068941
tRNA demethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Alkbh1 alkB homolog 1, histone H2A dioxygenase JBrowse link NW_004936488 6,459,195 6,486,756 RGD:9068941
tRNA dihydrouridine synthesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dus2 dihydrouridine synthase 2 JBrowse link NW_004936475 18,415,019 18,457,369 RGD:9068941
tRNA methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Alkbh8 alkB homolog 8, tRNA methyltransferase JBrowse link NW_004936551 1,070,484 1,123,427 RGD:9068941
G Bcdin3d BCDIN3 domain containing RNA methyltransferase JBrowse link NW_004936512 7,516,324 7,521,063 RGD:9068941
G Mettl2a methyltransferase like 2A JBrowse link NW_004936541 3,247,046 3,262,814 RGD:9068941
G Mettl6 methyltransferase like 6 JBrowse link NW_004936473 2,963,591 2,984,827 RGD:9068941
G Nsun2 NOP2/Sun RNA methyltransferase 2 JBrowse link NW_004936634 798,894 825,413 RGD:9068941
G Nsun6 NOP2/Sun RNA methyltransferase 6 JBrowse link NW_004936520 8,909,509 8,950,960 RGD:9068941
G Trdmt1 tRNA aspartic acid methyltransferase 1 JBrowse link NW_004936520 10,104,050 10,122,057 RGD:9068941
G Trmo tRNA methyltransferase O JBrowse link NW_004936524 6,666,139 6,678,712 RGD:9068941
G Trmt10a tRNA methyltransferase 10A JBrowse link NW_004936520 3,400,029 3,413,867 RGD:9068941
tRNA methylthiolation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdkal1 CDK5 regulatory subunit associated protein 1 like 1 JBrowse link NW_004936552 5,903,042 6,347,498 RGD:9068941
tRNA modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aars1 alanyl-tRNA synthetase 1 JBrowse link NW_004936475 23,268,613 23,294,236 RGD:9068941
G Ankrd16 ankyrin repeat domain 16 JBrowse link NW_004936484 8,690,183 8,700,705 RGD:9068941
G Dtwd1 DTW domain containing 1 JBrowse link NW_004936471 11,799,811 11,817,640 RGD:9068941
G Dtwd2 DTW domain containing 2 JBrowse link NW_004936715 1,775,014 1,921,945 RGD:9068941
G Mettl1 methyltransferase like 1 JBrowse link NW_004936646 1,905,063 1,908,968 RGD:9068941
G Wdr4 WD repeat domain 4 JBrowse link NW_004936500 1,144,190 1,162,925 RGD:9068941
tRNA N1-guanine methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Trmt10a tRNA methyltransferase 10A JBrowse link NW_004936520 3,400,029 3,413,867 RGD:9068941
tRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adat1 adenosine deaminase tRNA specific 1 JBrowse link NW_004936475 24,244,412 24,291,111 RGD:9068941
G Fars2 phenylalanyl-tRNA synthetase 2, mitochondrial JBrowse link NW_004936534 6,703,760 7,205,204 RGD:9068941
G Pop5 POP5 homolog, ribonuclease P/MRP subunit JBrowse link NW_004936668 385,945 388,688 RGD:9068941
G Ssb small RNA binding exonuclease protection factor La JBrowse link NW_004936509 286,397 295,779 RGD:9068941
G Thg1l tRNA-histidine guanylyltransferase 1 like JBrowse link NW_004936515 5,462,344 5,468,475 RGD:9068941
tRNA pseudouridine synthesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pus1 pseudouridine synthase 1 JBrowse link NW_004936660 2,192,583 2,199,645 RGD:9068941
G Pus10 pseudouridine synthase 10 JBrowse link NW_004936491 6,439,248 6,530,309 RGD:9068941
G Pus3 pseudouridine synthase 3 JBrowse link NW_004936572 6,322,725 6,331,844 RGD:9068941
G Pus7 pseudouridine synthase 7 JBrowse link NW_004936479 18,354,009 18,395,765 RGD:9068941
tRNA splicing, via endonucleolytic cleavage and ligation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Clp1 cleavage factor polyribonucleotide kinase subunit 1 JBrowse link NW_004936581 4,870,126 4,873,158 RGD:9068941
G Ddx1 DEAD-box helicase 1 JBrowse link NW_004936493 14,884,532 14,918,621 RGD:9068941
G Rtcb RNA 2',3'-cyclic phosphate and 5'-OH ligase JBrowse link NW_004936492 7,334,420 7,353,745 RGD:9068941
G Rtraf RNA transcription, translation and transport factor JBrowse link NW_004936495 13,735,580 13,750,554 RGD:9068941
G Trpt1 tRNA phosphotransferase 1 JBrowse link NW_004936599 4,973,258 4,975,484 RGD:9068941
G Tsen2 tRNA splicing endonuclease subunit 2 JBrowse link NW_004936602 1,163,927 1,195,163 RGD:9068941
G Tsen54 tRNA splicing endonuclease subunit 54 JBrowse link NW_004936594 744,531 753,350 RGD:9068941
G Zbtb8os zinc finger and BTB domain containing 8 opposite strand JBrowse link NW_004936474 15,577,023 15,592,891 RGD:9068941
tRNA thio-modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mocs3 molybdenum cofactor synthesis 3 JBrowse link NW_004936514 3,830,189 3,832,194 RGD:9068941
G Urm1 ubiquitin related modifier 1 JBrowse link NW_004936487 15,914,087 15,933,114 RGD:9068941
tRNA threonylcarbamoyladenosine modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Osgep O-sialoglycoprotein endopeptidase JBrowse link NW_004936877 659,881 666,169 RGD:9068941
G Tprkb TP53RK binding protein JBrowse link NW_004936491 17,493,630 17,500,779 RGD:9068941
tRNA wobble base cytosine methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nsun3 NOP2/Sun RNA methyltransferase 3 JBrowse link NW_004936666 183,536 236,580 RGD:9068941
tRNA wobble cytosine modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Alkbh1 alkB homolog 1, histone H2A dioxygenase JBrowse link NW_004936488 6,459,195 6,486,756 RGD:9068941
tRNA wobble uridine modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Alkbh8 alkB homolog 8, tRNA methyltransferase JBrowse link NW_004936551 1,070,484 1,123,427 RGD:9068941
G Elp3 elongator acetyltransferase complex subunit 3 JBrowse link NW_004936675 933,698 1,014,919 RGD:9068941
G Mocs3 molybdenum cofactor synthesis 3 JBrowse link NW_004936514 3,830,189 3,832,194 RGD:9068941
G Mto1 mitochondrial tRNA translation optimization 1 JBrowse link NW_004936859 757,977 788,073 RGD:9068941
G Urm1 ubiquitin related modifier 1 JBrowse link NW_004936487 15,914,087 15,933,114 RGD:9068941
tRNA-guanine transglycosylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Qtrt1 queuine tRNA-ribosyltransferase catalytic subunit 1 JBrowse link NW_004936659 946,338 953,952 RGD:9068941
G Qtrt2 queuine tRNA-ribosyltransferase accessory subunit 2 JBrowse link NW_004936536 1,526,408 1,551,922 RGD:9068941
U2 snRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ints1 integrator complex subunit 1 JBrowse link NW_004936754 1,597,574 1,626,578 RGD:9068941
U2-type prespliceosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sf3a1 splicing factor 3a subunit 1 JBrowse link NW_004936904 310,182 328,882 RGD:9068941
G Sf3a2 splicing factor 3a subunit 2 JBrowse link NW_004936588 1,335,143 1,342,573 RGD:9068941
G Sf3a3 splicing factor 3a subunit 3 JBrowse link NW_004936474 20,092,159 20,116,612 RGD:9068941
U6 snRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tut1 terminal uridylyl transferase 1, U6 snRNA-specific JBrowse link NW_004936581 665,751 691,448 RGD:9068941
G Usb1 U6 snRNA biogenesis phosphodiesterase 1 JBrowse link NW_004936475 9,933,607 9,947,910 RGD:9068941
wybutosine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tyw5 tRNA-yW synthesizing protein 5 JBrowse link NW_004936825 918,259 937,381 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11931
    metabolic process 7630
      organic substance metabolic process 7327
        macromolecule metabolic process 6361
          gene expression 3920
            RNA processing 508
              RNA 3'-end processing + 59
              RNA 5'-end processing + 16
              RNA capping + 7
              RNA splicing + 254
              chloroplast RNA processing + 0
              conversion of ds siRNA to ss siRNA + 1
              dsRNA processing + 46
              mRNA processing + 265
              mitochondrial RNA processing + 13
              ncRNA processing + 176
              tRNA-type intron splice site recognition and cleavage 0
Path 2
Term Annotations click to browse term
  biological_process 11931
    cellular process 11114
      cellular metabolic process 7040
        cellular nitrogen compound metabolic process 4063
          nucleobase-containing compound metabolic process 3565
            nucleic acid metabolic process 3280
              RNA metabolic process 2910
                RNA processing 508
                  RNA 3'-end processing + 59
                  RNA 5'-end processing + 16
                  RNA capping + 7
                  RNA splicing + 254
                  chloroplast RNA processing + 0
                  conversion of ds siRNA to ss siRNA + 1
                  dsRNA processing + 46
                  mRNA processing + 265
                  mitochondrial RNA processing + 13
                  ncRNA processing + 176
                  tRNA-type intron splice site recognition and cleavage 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.