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ONTOLOGY REPORT - ANNOTATIONS


Term:mRNA processing
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Accession:GO:0006397 term browser browse the term
Definition:Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
Synonyms:related_synonym: mRNA maturation
 xref: MIPS_funcat:11.04.03


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mRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G A1cf APOBEC1 complementation factor JBrowse link 1 250,426,027 250,514,245 RGD:1600115
G AABR07035787.1 RGD:1600115
G AABR07051190.1 RGD:1600115
G AABR07065078.1 RGD:1600115
G Adar adenosine deaminase, RNA-specific JBrowse link 2 189,045,551 189,085,448 RGD:1600115
G Adarb1 adenosine deaminase, RNA-specific, B1 JBrowse link 20 11,972,352 12,101,022 RGD:1600115
G Adarb2 adenosine deaminase, RNA-specific, B2 JBrowse link 17 58,098,979 58,653,137 RGD:1600115
G Akap8l A-kinase anchoring protein 8 like JBrowse link 7 14,340,168 14,369,835 RGD:1624291
G Alkbh5 alkB homolog 5, RNA demethylase JBrowse link 10 46,906,314 46,927,759 RGD:1624291
RGD:13792537
RGD:1600115
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 JBrowse link 4 155,386,367 155,414,034 RGD:1600115
G Apobec4 apolipoprotein B mRNA editing enzyme catalytic polypeptide like 4 JBrowse link 13 70,157,098 70,165,686 RGD:1600115
G Arl6ip4 ADP-ribosylation factor like GTPase 6 interacting protein 4 JBrowse link 12 37,904,376 37,906,521 RGD:1600115
G Brdt bromodomain testis associated JBrowse link 14 3,437,876 3,462,613 RGD:1600115
G C1qbp complement C1q binding protein JBrowse link 10 57,613,876 57,618,527 RGD:1600115
G Carm1 coactivator-associated arginine methyltransferase 1 JBrowse link 8 22,577,723 22,622,555 RGD:1600115
G Cdk12 cyclin-dependent kinase 12 JBrowse link 10 86,157,186 86,210,657 RGD:1600115
G Cir1 corepressor interacting with RBPJ, CIR1 JBrowse link 3 59,994,547 60,023,843 RGD:1600115
G Clasrp CLK4-associating serine/arginine rich protein JBrowse link 1 80,491,520 80,515,761 RGD:1600115
G Cpeb1 cytoplasmic polyadenylation element binding protein 1 JBrowse link 1 143,171,457 143,278,485 RGD:1600115
G Cpsf6 cleavage and polyadenylation specific factor 6 JBrowse link 7 60,385,688 60,417,661 RGD:1624291
G Csdc2 cold shock domain containing C2 JBrowse link 7 123,168,811 123,183,336 RGD:1600115
G Cstf1 cleavage stimulation factor subunit 1 JBrowse link 3 170,380,413 170,392,162 RGD:1600115
G Cstf3 cleavage stimulation factor subunit 3 JBrowse link 3 94,530,586 94,603,378 RGD:1600115
G Ctnnbl1 catenin, beta like 1 JBrowse link 3 154,212,245 154,373,170 RGD:1600115
G Da2-19 uncharacterized LOC302729 JBrowse link X 48,196,789 48,213,506 RGD:1600115
G Ddx1 DEAD-box helicase 1 JBrowse link 6 38,422,892 38,453,762 RGD:1600115
G Elavl4 ELAV like RNA binding protein 4 JBrowse link 5 130,001,387 130,144,557 RGD:1600115
G Ern2 endoplasmic reticulum to nucleus signaling 2 JBrowse link 1 192,126,023 192,142,865 RGD:1600115
G Fblim1 filamin binding LIM protein 1 JBrowse link 5 160,122,466 160,158,921 RGD:1600115
G Fmr1 FMRP translational regulator 1 JBrowse link X 154,684,924 154,722,369 RGD:1600115
G Gpatch1 G patch domain containing 1 JBrowse link 1 91,529,096 91,578,032 RGD:1600115
G H2afb3 H2A histone family, member B3 JBrowse link X 88,602,135 88,602,485 RGD:1624291
G Habp4 hyaluronan binding protein 4 JBrowse link 17 1,679,561 1,702,245 RGD:1600115
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 JBrowse link 4 81,237,496 81,241,281 RGD:1624291
RGD:1600115
G Hnrnpa3 heterogeneous nuclear ribonucleoprotein A3 JBrowse link 3 62,481,222 62,491,356 RGD:1600115
G Hnrnpf heterogeneous nuclear ribonucleoprotein F JBrowse link 4 149,957,143 149,978,896 RGD:1600115
G Hnrnph1 heterogeneous nuclear ribonucleoprotein H1 JBrowse link 10 35,872,619 35,879,911 RGD:1600115
G Hnrnpk heterogeneous nuclear ribonucleoprotein K JBrowse link 17 6,664,730 6,676,753 RGD:1600115
G Hnrnpl heterogeneous nuclear ribonucleoprotein L JBrowse link 1 86,994,090 87,006,776 RGD:1600115
G Hnrnpll heterogeneous nuclear ribonucleoprotein L-like JBrowse link 6 2,698,983 2,729,715 RGD:1600115
G Hnrnpu heterogeneous nuclear ribonucleoprotein U JBrowse link 13 96,222,093 96,238,845 RGD:1600115
G Hspa8 heat shock protein family A (Hsp70) member 8 JBrowse link 8 44,989,401 44,993,261 RGD:1600115
G Iws1 interacts with SUPT6H, CTD assembly factor 1 JBrowse link 18 24,849,508 24,891,339 RGD:1600115
G Jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase JBrowse link 10 105,781,752 105,787,803 RGD:1600115
G Khdrbs1 KH RNA binding domain containing, signal transduction associated 1 JBrowse link 5 147,927,145 147,953,093 RGD:1600115
G Khdrbs2 KH RNA binding domain containing, signal transduction associated 2 JBrowse link 9 39,501,431 40,008,707 RGD:1600115
G Khdrbs3 KH RNA binding domain containing, signal transduction associated 3 JBrowse link 7 110,031,819 110,179,475 RGD:632715
G Khsrp KH-type splicing regulatory protein JBrowse link 9 10,013,795 10,023,670 RGD:1600115
G Lgals3 galectin 3 JBrowse link 15 24,153,602 24,165,537 RGD:1600115
G LOC100910882 RNA-binding protein 39-like JBrowse link 3 152,226,011 152,259,236 RGD:1600115
G LOC679894 similar to THO complex subunit 2 (Tho2) JBrowse link 14 6,561,962 6,601,906 RGD:1600115
G LOC681410 hypothetical protein LOC681410 JBrowse link 17 6,909,166 6,912,145 RGD:13792537
G Lsm1 LSM1 homolog, mRNA degradation associated JBrowse link 16 71,046,475 71,057,883 RGD:1600115
G Lsm5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 4 87,016,003 87,019,219 RGD:1600115
G Magoh mago homolog, exon junction complex subunit JBrowse link 5 127,480,465 127,487,617 RGD:1600115
G Mbnl2 muscleblind-like splicing regulator 2 JBrowse link 15 105,640,097 105,797,933 RGD:1600115
G Mettl3 methyltransferase-like 3 JBrowse link 15 28,710,299 28,721,491 RGD:1624291
G Nsrp1 nuclear speckle splicing regulatory protein 1 JBrowse link 10 63,098,115 63,131,779 RGD:1600115
G Nudt21 nudix hydrolase 21 JBrowse link 19 11,451,366 11,470,637 RGD:1624291
RGD:13792537
RGD:1600115
G Pabpc1 poly(A) binding protein, cytoplasmic 1 JBrowse link 7 75,409,581 75,421,874 RGD:1600115
G Pan2 poly(A) specific ribonuclease subunit PAN2 JBrowse link 7 2,717,021 2,736,541 RGD:1600115
G Pan3 poly(A) specific ribonuclease subunit PAN3 JBrowse link 12 9,214,116 9,331,901 RGD:1600115
G Pdcd11 programmed cell death 11 JBrowse link 1 266,866,931 266,908,042 RGD:1600115
G Pde12 phosphodiesterase 12 JBrowse link 16 2,357,028 2,367,069 RGD:1600115
G Phrf1 PHD and ring finger domains 1 JBrowse link 1 214,215,673 214,248,906 RGD:1299392
G Ppil3 peptidylprolyl isomerase like 3 JBrowse link 9 65,315,407 65,329,145 RGD:1600115
G Prkaca protein kinase cAMP-activated catalytic subunit alpha JBrowse link 19 25,095,089 25,118,869 RGD:1624291
RGD:1600115
G Prmt9 protein arginine methyltransferase 9 JBrowse link 19 34,067,008 34,105,626 RGD:1624291
G Prpf38b pre-mRNA processing factor 38B JBrowse link 2 211,706,245 211,715,271 RGD:1600115
G Prpf4b pre-mRNA processing factor 4B JBrowse link 17 30,680,454 30,714,542 RGD:1600115
G Ptbp1 polypyrimidine tract binding protein 1 JBrowse link 7 12,663,965 12,673,723 RGD:1600115
RGD:10045980
G Ptbp3 polypyrimidine tract binding protein 3 JBrowse link 5 76,670,074 76,756,196 RGD:1600115
G Puf60 poly-U binding splicing factor 60 JBrowse link 7 117,129,237 117,140,234 RGD:1600115
G Qk quaking JBrowse link 1 50,983,647 51,050,692 RGD:10045996
G Rbbp6 RB binding protein 6, ubiquitin ligase JBrowse link 1 192,933,264 192,965,160 RGD:1600115
G Rbfox1 RNA binding fox-1 homolog 1 JBrowse link 10 8,312,961 10,437,778 RGD:1600115
G Rbfox2 RNA binding fox-1 homolog 2 JBrowse link 7 118,157,093 118,396,733 RGD:1600115
G Rbfox3 RNA binding fox-1 homolog 3 JBrowse link 10 107,517,916 107,850,764 RGD:1600115
G Rbm20 RNA binding motif protein 20 JBrowse link 1 274,391,932 274,589,816 RGD:1600115
G Rbm24 RNA binding motif protein 24 JBrowse link 17 18,671,037 18,682,876 RGD:13792537
G Rbm25l1 RNA binding motif protein 25-like 1 JBrowse link 10 10,457,316 10,460,540 RGD:1600115
G Rbm26 RNA binding motif protein 26 JBrowse link 15 89,262,683 89,339,323 RGD:1600115
G Rbm27 RNA binding motif protein 27 JBrowse link 18 36,596,568 36,657,157 RGD:1600115
G Rbm38 RNA binding motif protein 38 JBrowse link 3 171,037,891 171,050,500 RGD:13792537
G Rbm39 RNA binding motif protein 39 JBrowse link 3 151,691,498 151,724,723 RGD:1600115
G Rbmxl1b RNA binding motif protein, X-linked-like 1B JBrowse link 4 42,186,612 42,188,294 RGD:1600115
G Rnasel ribonuclease L JBrowse link 13 71,188,712 71,202,636 RGD:1600115
G Scaf1 SR-related CTD-associated factor 1 JBrowse link 1 100,997,724 101,010,855 RGD:1299392
G Scaf4 SR-related CTD-associated factor 4 JBrowse link 11 30,371,713 30,428,073 RGD:1299392
G Scaf8 SR-related CTD-associated factor 8 JBrowse link 1 44,017,801 44,120,619 RGD:1299392
G Sf3a1 splicing factor 3a, subunit 1 JBrowse link 14 84,393,182 84,413,931 RGD:1624291
G Sf3a2 splicing factor 3a, subunit 2 JBrowse link 7 11,777,826 11,784,373 RGD:1624291
G Sf3a3 splicing factor 3a, subunit 3 JBrowse link 5 142,702,721 142,722,350 RGD:1624291
G Smn1 survival of motor neuron 1, telomeric JBrowse link 2 30,360,101 30,371,147 RGD:1600115
G Smndc1 survival motor neuron domain containing 1 JBrowse link 1 274,096,068 274,107,138 RGD:1600115
G Son SON DNA and RNA binding protein JBrowse link 11 31,806,598 31,837,769 RGD:1624291
RGD:13792537
G Srek1 splicing regulatory glutamic acid and lysine rich protein 1 JBrowse link 2 33,806,035 33,841,594 RGD:1600115
G Srek1ip1 SREK1-interacting protein 1 JBrowse link 2 34,923,187 34,940,410 RGD:1600115
G Srrm1 serine and arginine repetitive matrix 1 JBrowse link 5 153,675,619 153,708,187 RGD:1600115
G Srrm4 serine/arginine repetitive matrix 4 JBrowse link 12 45,726,192 45,884,644 RGD:1624291
RGD:13792537
G Sugp1 SURP and G patch domain containing 1 JBrowse link 16 21,100,923 21,131,795 RGD:1600115
G Supt4h1 SPT4 homolog, DSIF elongation factor subunit JBrowse link 10 75,032,365 75,038,547 RGD:13792537
G Syncrip synaptotagmin binding, cytoplasmic RNA interacting protein JBrowse link 8 96,100,692 96,266,342 RGD:1600115
G Tdrd3 tudor domain containing 3 JBrowse link 15 70,732,164 70,864,855 RGD:1600115
G Tent2 terminal nucleotidyltransferase 2 JBrowse link 2 22,746,290 22,798,252 RGD:1600115
G Thoc2 THO complex 2 JBrowse link X 128,153,824 128,268,327 RGD:1600115
G Thoc5 THO complex 5 JBrowse link 14 85,138,219 85,171,729 RGD:1600115
G Thoc6 THO complex 6 JBrowse link 10 12,989,135 12,994,495 RGD:1600115
G Thoc7 THO complex 7 JBrowse link 15 12,569,235 12,584,101 RGD:1600115
G Thrap3 thyroid hormone receptor associated protein 3 JBrowse link 5 144,178,248 144,221,318 RGD:1600115
G Trub2 TruB pseudouridine synthase family member 2 JBrowse link 3 8,338,479 8,348,746 RGD:1600115
G Tsen2 tRNA splicing endonuclease subunit 2 JBrowse link 4 147,455,506 147,490,869 RGD:1600115
G Xrn2 5'-3' exoribonuclease 2 JBrowse link 3 141,224,858 141,298,272 RGD:1600115
G Ybx1 Y box binding protein 1 JBrowse link 5 138,319,754 138,336,721 RGD:1600115
G Zfp36l1 zinc finger protein 36, C3H type-like 1 JBrowse link 6 103,308,032 103,313,074 RGD:1600115
G Zfp830 zinc finger protein 830 JBrowse link 10 70,118,250 70,119,714 RGD:1600115
G Zranb2 zinc finger RANBP2-type containing 2 JBrowse link 2 263,864,088 263,877,872 RGD:1600115
7-methylguanosine mRNA capping term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cmtr1 cap methyltransferase 1 JBrowse link 20 8,324,968 8,385,174 RGD:1600115
RGD:13792537
RGD:1624291
G Cmtr2 cap methyltransferase 2 JBrowse link 19 41,426,536 41,433,367 RGD:1624291
RGD:13792537
G Ncbp1 nuclear cap binding protein subunit 1 JBrowse link 5 61,734,118 61,767,098 RGD:1624291
RGD:1600115
G Ramac RNA guanine-7 methyltransferase activating subunit JBrowse link 1 143,583,675 143,589,563 RGD:1624291
G Rngtt RNA guanylyltransferase and 5'-phosphatase JBrowse link 5 48,561,325 48,779,214 RGD:1624291
RGD:13792537
G Rnmt RNA (guanine-7-) methyltransferase JBrowse link 18 64,084,746 64,108,246 RGD:1600115
RGD:13792537
RGD:1624291
alternative mRNA splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07056845.1 RGD:13792537
G Cdk13 cyclin-dependent kinase 13 JBrowse link 17 49,833,194 49,922,932 RGD:1624291
G Celf4 CUGBP, Elav-like family member 4 JBrowse link 18 17,689,090 18,079,835 RGD:1624291
G Ddx17 DEAD-box helicase 17 JBrowse link 7 120,761,843 120,765,012 RGD:1624291
RGD:13792537
G Ddx5 DEAD-box helicase 5 JBrowse link 10 94,979,759 94,988,461 RGD:1624291
G Dhx9 DExH-box helicase 9 JBrowse link 13 70,885,503 70,922,278 RGD:1624291
G Esrp1 epithelial splicing regulatory protein 1 JBrowse link 5 24,576,988 24,631,758 RGD:1624291
G Esrp2 epithelial splicing regulatory protein 2 JBrowse link 19 38,113,412 38,120,578 RGD:1624291
RGD:1600115
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 JBrowse link 7 144,865,302 144,871,592 RGD:1624291
G Hnrnpm heterogeneous nuclear ribonucleoprotein M JBrowse link 7 18,516,253 18,554,536 RGD:1624291
RGD:1600115
RGD:13792537
G Insr insulin receptor JBrowse link 12 1,682,527 1,816,414 RGD:9685423
G Kdm1a lysine demethylase 1A JBrowse link 5 154,909,003 154,965,171 RGD:9588288
G Mbnl1 muscleblind-like splicing regulator 1 JBrowse link 2 150,698,248 150,867,791 RGD:1624291
G Pqbp1 polyglutamine binding protein 1 JBrowse link X 15,448,570 15,453,130 RGD:1600115
RGD:1624291
G Rbm17 RNA binding motif protein 17 JBrowse link 17 70,586,345 70,603,289 RGD:1624291
RGD:13792537
G Rsrc1 arginine and serine rich coiled-coil 1 JBrowse link 2 164,126,898 164,533,652 RGD:1624291
RGD:13792537
G Scnm1 sodium channel modifier 1 JBrowse link 2 196,300,239 196,304,419 RGD:1624291
G Sfpq splicing factor proline and glutamine rich JBrowse link 5 145,079,803 145,088,517 RGD:1624291
RGD:13792537
G Sfswap splicing factor SWAP JBrowse link 12 30,740,563 30,811,015 RGD:1624291
RGD:1600115
G Slu7 SLU7 homolog, splicing factor JBrowse link 10 29,029,556 29,044,919 RGD:1624291
RGD:1304333
G Smptb polypyrimidine tract-binding protein JBrowse link X 17,484,839 17,486,721 RGD:1299129
G Srsf1 serine and arginine rich splicing factor 1 JBrowse link 10 75,334,200 75,341,197 RGD:1624291
RGD:11038736
G Srsf6 serine and arginine rich splicing factor 6 JBrowse link 3 159,305,345 159,310,668 RGD:1624291
RGD:13792537
RGD:1600115
generation of catalytic spliceosome for first transesterification step term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Prpf19 pre-mRNA processing factor 19 JBrowse link 1 226,947,065 226,958,147 RGD:13792537
G Xab2 XPA binding protein 2 JBrowse link 12 2,158,391 2,170,397 RGD:13792537
generation of catalytic spliceosome for second transesterification step term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Isy1 ISY1 splicing factor homolog JBrowse link 4 119,721,659 119,742,349 RGD:13792537
G Prpf18 pre-mRNA processing factor 18 JBrowse link 17 77,601,914 77,632,507 RGD:13792537
mitochondrial mRNA polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 JBrowse link 14 113,530,470 113,561,645 RGD:1624291
mitochondrial mRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tbrg4 transforming growth factor beta regulator 4 JBrowse link 14 86,876,800 86,885,603 RGD:1624291
RGD:1600115
mRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rprd1a regulation of nuclear pre-mRNA domain containing 1A JBrowse link 18 16,450,160 16,497,913 RGD:13792537
G Rprd1b regulation of nuclear pre-mRNA domain containing 1B JBrowse link 3 154,507,029 154,553,312 RGD:13792537
G Rprd2 regulation of nuclear pre-mRNA domain containing 2 JBrowse link 2 197,882,666 197,937,844 RGD:13792537
G Zc3h3 zinc finger CCCH type containing 3 JBrowse link 7 116,787,762 116,872,536 RGD:1624291
mRNA 3'-end processing by stem-loop binding and cleavage term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cpsf2 cleavage and polyadenylation specific factor 2 JBrowse link 6 125,870,372 125,898,039 RGD:1624291
G Cpsf3 cleavage and polyadenylation specific factor 3 JBrowse link 6 43,363,792 43,391,712 RGD:1624291
RGD:13792537
G LOC100363294 stem-loop binding protein-like JBrowse link 18 27,550,426 27,557,699 RGD:13792537
G Lsm11 LSM11, U7 small nuclear RNA associated JBrowse link 10 31,023,561 31,041,700 RGD:1624291
RGD:13792537
G Slbp stem-loop binding protein JBrowse link 14 82,356,916 82,366,368 RGD:1624291
RGD:13792537
G Zfp473 zinc finger protein 473 JBrowse link 1 100,736,319 100,755,498 RGD:1624291
mRNA 3'-splice site recognition term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Isy1 ISY1 splicing factor homolog JBrowse link 4 119,721,659 119,742,349 RGD:13792537
G Slu7 SLU7 homolog, splicing factor JBrowse link 10 29,029,556 29,044,919 RGD:1624291
RGD:1304333
mRNA 5'-splice site recognition term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Prpf39 pre-mRNA processing factor 39 JBrowse link 6 86,785,793 86,810,806 RGD:13792537
G Psip1 PC4 and SFRS1 interacting protein 1 JBrowse link 5 101,555,691 101,588,659 RGD:1624291
RGD:1600115
G Sfswap splicing factor SWAP JBrowse link 12 30,740,563 30,811,015 RGD:1624291
RGD:13792537
RGD:1600115
G Snrpc small nuclear ribonucleoprotein polypeptide C JBrowse link 20 7,409,401 7,427,581 RGD:13792537
G Srsf1 serine and arginine rich splicing factor 1 JBrowse link 10 75,334,200 75,341,197 RGD:1624291
G Srsf12 serine and arginine rich splicing factor 12 JBrowse link 5 48,456,777 48,484,017 RGD:1624291
mRNA alternative polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cpsf6 cleavage and polyadenylation specific factor 6 JBrowse link 7 60,385,688 60,417,661 RGD:1624291
G Cpsf7 cleavage and polyadenylation specific factor 7 JBrowse link 1 226,572,399 226,596,185 RGD:1600115
RGD:1624291
G Nudt21 nudix hydrolase 21 JBrowse link 19 11,451,366 11,470,637 RGD:1600115
RGD:1624291
G Virma vir like m6A methyltransferase associated JBrowse link 5 25,042,743 25,121,403 RGD:1624291
G Ythdc1 YTH domain containing 1 JBrowse link 14 22,971,834 23,002,326 RGD:1624291
mRNA cis splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07055789.1 RGD:13792537
G Cwc15 CWC15 spliceosome-associated protein JBrowse link 8 12,994,131 13,004,958 RGD:13792537
G Dcps decapping enzyme, scavenger JBrowse link 8 36,321,992 36,374,665 RGD:1600115
RGD:1624291
G Ncbp1 nuclear cap binding protein subunit 1 JBrowse link 5 61,734,118 61,767,098 RGD:1600115
G Ncbp2 nuclear cap binding protein subunit 2 JBrowse link 11 72,071,838 72,103,087 RGD:1600115
RGD:1624291
G Prpf40a pre-mRNA processing factor 40 homolog A JBrowse link 3 38,680,583 38,741,570 RGD:1600115
G Prpf40b pre-mRNA processing factor 40 homolog B JBrowse link 7 140,958,952 140,981,588 RGD:1600115
G Rbm19 RNA binding motif protein 19 JBrowse link 12 41,907,978 41,993,969 RGD:13792537
G Rbm22 RNA binding motif protein 22 JBrowse link 18 55,828,158 55,839,421 RGD:1624291
RGD:1600115
G Rbm4b RNA binding motif protein 4B JBrowse link 1 220,009,397 220,019,488 RGD:13792537
G Sart1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP JBrowse link 1 220,762,496 220,771,158 RGD:13792537
G Srsf1 serine and arginine rich splicing factor 1 JBrowse link 10 75,334,200 75,341,197 RGD:13792537
G Srsf10 serine and arginine rich splicing factor 10 JBrowse link 5 154,205,358 154,219,550 RGD:13792537
G Srsf12 serine and arginine rich splicing factor 12 JBrowse link 5 48,456,777 48,484,017 RGD:13792537
G Srsf2 serine and arginine rich splicing factor 2 JBrowse link 10 105,792,779 105,795,986 RGD:13792537
G Srsf3 serine and arginine rich splicing factor 3 JBrowse link 20 6,288,285 6,298,218 RGD:13792537
G Srsf4 serine and arginine rich splicing factor 4 JBrowse link 5 150,032,999 150,060,769 RGD:13792537
G Srsf5 serine and arginine rich splicing factor 5 JBrowse link 6 104,611,026 104,640,033 RGD:13792537
G Srsf6 serine and arginine rich splicing factor 6 JBrowse link 3 159,305,345 159,310,668 RGD:13792537
G Srsf7 serine and arginine rich splicing factor 7 JBrowse link 6 2,879,312 2,886,505 RGD:13792537
G Srsf8 serine and arginine rich splicing factor 8 JBrowse link X
X
49,529,525
49,644,973
49,530,166
49,705,870
RGD:13792537
G Srsf9 serine and arginine rich splicing factor 9 JBrowse link 12 47,039,714 47,046,022 RGD:13792537
G Wbp11 WW domain binding protein 11 JBrowse link 4 170,772,166 170,785,613 RGD:13792537
G Wbp11l1 WW domain-binding protein 11-like 1 JBrowse link 4 170,154,257 170,167,724 RGD:13792537
G Wbp4 WW domain binding protein 4 JBrowse link 15 61,745,989 61,772,516 RGD:1624291
RGD:1600115
mRNA cleavage involved in mRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ern1 endoplasmic reticulum to nucleus signaling 1 JBrowse link 10 94,588,555 94,682,072 RGD:1624291
mRNA polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ahcyl1 adenosylhomocysteinase-like 1 JBrowse link 2 210,438,884 210,474,350 RGD:1624291
G Aplp1 amyloid beta precursor like protein 1 JBrowse link 1 88,897,525 88,908,750 RGD:1624291
G App amyloid beta precursor protein JBrowse link 11 24,425,013 24,641,872 RGD:1624291
RGD:1600115
G Cdc73 cell division cycle 73 JBrowse link 13 60,403,771 60,496,511 RGD:1624291
RGD:1600115
G Clp1 cleavage factor polyribonucleotide kinase subunit 1 JBrowse link 3 72,125,269 72,137,122 RGD:13792537
G Cpsf1 cleavage and polyadenylation specific factor 1 JBrowse link 7 117,661,779 117,672,373 RGD:1624291
RGD:13792537
G Cpsf2 cleavage and polyadenylation specific factor 2 JBrowse link 6 125,870,372 125,898,039 RGD:1600115
G Cpsf3 cleavage and polyadenylation specific factor 3 JBrowse link 6 43,363,792 43,391,712 RGD:13792537
G Cstf2 cleavage stimulation factor subunit 2 JBrowse link X 104,882,726 104,909,746 RGD:1600115
G Fip1l1 factor interacting with PAPOLA and CPSF1 JBrowse link 14 36,150,381 36,208,395 RGD:13792537
G Leo1 LEO1 homolog, Paf1/RNA polymerase II complex component JBrowse link 8 82,380,906 82,405,293 RGD:1624291
RGD:1600115
G Mtpap mitochondrial poly(A) polymerase JBrowse link 17 56,046,507 56,068,185 RGD:1624291
G Nudt21 nudix hydrolase 21 JBrowse link 19 11,451,366 11,470,637 RGD:1600115
G Pabpc1l poly(A) binding protein, cytoplasmic 1-like JBrowse link 3 160,410,733 160,447,073 RGD:1624291
G Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component JBrowse link 1 85,362,421 85,367,999 RGD:1624291
RGD:1600115
G Papola poly (A) polymerase alpha JBrowse link 6 129,609,068 129,662,002 RGD:1624291
RGD:13792537
G Papolg poly(A) polymerase gamma JBrowse link 14 108,624,359 108,658,371 RGD:13792537
G Pcf11 PCF11 cleavage and polyadenylation factor subunit JBrowse link 1 157,463,014 157,494,134 RGD:13792537
G Scaf8 SR-related CTD-associated factor 8 JBrowse link 1 44,017,801 44,120,619 RGD:13792537
G Ssu72 SSU72 homolog, RNA polymerase II CTD phosphatase JBrowse link 5 173,152,964 173,182,720 RGD:1624291
RGD:13792537
RGD:1600115
G Sympk symplekin JBrowse link 1 79,931,097 79,959,461 RGD:1624291
G Tent4b terminal nucleotidyltransferase 4B JBrowse link 19 19,771,289 19,834,759 RGD:1624291
G Tut1 terminal uridylyl transferase 1, U6 snRNA-specific JBrowse link 1 225,151,462 225,162,445 RGD:1600115
RGD:1624291
G Wdr33 WD repeat domain 33 JBrowse link 18 24,584,832 24,689,681 RGD:13792537
mRNA splice site selection term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Celf1 CUGBP, Elav-like family member 1 JBrowse link 3 79,768,900 79,844,548 RGD:1624291
RGD:13792537
G Celf2 CUGBP, Elav-like family member 2 JBrowse link 17 75,259,269 75,660,154 RGD:1624291
RGD:13792537
RGD:1600115
G Celf3 CUGBP, Elav-like family member 3 JBrowse link 2 195,716,373 195,732,872 RGD:13792537
G Celf4 CUGBP, Elav-like family member 4 JBrowse link 18 17,689,090 18,079,835 RGD:1624291
RGD:13792537
G Celf5 CUGBP, Elav-like family member 5 JBrowse link 7 11,095,449 11,119,941 RGD:13792537
G Celf6 CUGBP, Elav-like family member 6 JBrowse link 8 64,364,491 64,428,452 RGD:13792537
G Khdc4 KH domain containing 4, pre-mRNA splicing factor JBrowse link 2 188,051,657 188,080,280 RGD:1624291
G Luc7l LUC7-like JBrowse link 10 15,538,878 15,572,651 RGD:13792537
G Luc7l2 LUC7-like 2 pre-mRNA splicing factor JBrowse link 4 66,290,319 66,357,970 RGD:13792537
G Luc7l3 LUC7-like 3 pre-mRNA splicing factor JBrowse link 10 81,991,147 82,027,119 RGD:13792537
G Mbnl1 muscleblind-like splicing regulator 1 JBrowse link 2 150,698,248 150,867,791 RGD:1624291
G Nol3 nucleolar protein 3 JBrowse link 19 37,232,567 37,236,668 RGD:1624291
RGD:1600115
G Ptbp2 polypyrimidine tract binding protein 2 JBrowse link 2 223,261,444 223,323,075 RGD:1624291
G Rbmx RNA binding motif protein, X-linked JBrowse link X 159,881,835 159,891,405 RGD:2316827
G Rbmxl1 RBMX like 1 JBrowse link 19 33,081,473 33,084,988 RGD:2316827
G Setx senataxin JBrowse link 3 7,680,430 7,731,815 RGD:1624291
G Srsf10 serine and arginine rich splicing factor 10 JBrowse link 5 154,205,358 154,219,550 RGD:1624291
G Srsf6 serine and arginine rich splicing factor 6 JBrowse link 3 159,305,345 159,310,668 RGD:1624291
RGD:13792537
RGD:1600115
G Ythdc1 YTH domain containing 1 JBrowse link 14 22,971,834 23,002,326 RGD:1624291
RGD:1600115
mRNA splicing, via endonucleolytic cleavage and ligation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ern1 endoplasmic reticulum to nucleus signaling 1 JBrowse link 10 94,588,555 94,682,072 RGD:1624291
mRNA splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07008904.1 RGD:1600115
G AABR07008911.1 RGD:1600115
G AABR07042226.1 RGD:13792537
G AABR07054367.1 RGD:1600115
G AC113901.1 RGD:1600115
G AC126899.1 RGD:13792537
G Aqr aquarius intron-binding spliceosomal factor JBrowse link 3 105,570,399 105,640,431 RGD:1624291
G Bcas2 BCAS2, pre-mRNA processing factor JBrowse link 2 205,662,633 205,670,514 RGD:1624291
G Bud13 BUD13 homolog JBrowse link 8 50,573,026 50,588,860 RGD:1600115
RGD:13792537
RGD:1624291
G Bud31 BUD31 homolog JBrowse link 12 11,232,963 11,240,449 RGD:1624291
RGD:13792537
G Casc3 CASC3 exon junction complex subunit JBrowse link 10 86,724,534 86,744,485 RGD:1600115
RGD:1624291
G Cdc40 cell division cycle 40 JBrowse link 20 48,503,973 48,574,546 RGD:1624291
G Cdc5l cell division cycle 5-like JBrowse link 9 17,949,764 17,988,514 RGD:1624291
RGD:1600115
G Crnkl1 crooked neck pre-mRNA splicing factor 1 JBrowse link 6 18,349,226 18,351,540 RGD:1600115
RGD:13792537
RGD:1624291
G Cwc15 CWC15 spliceosome-associated protein JBrowse link 8 12,994,131 13,004,958 RGD:1600115
RGD:1624291
G Cwc22 CWC22 spliceosome associated protein homolog JBrowse link 3 64,731,145 64,780,127 RGD:1624291
RGD:13792537
G Cwc25 CWC25 spliceosome-associated protein homolog JBrowse link 10 85,684,898 85,709,568 RGD:1624291
G Cwf19l1 CWF19 like cell cycle control factor 1 JBrowse link 1 263,887,014 263,910,251 RGD:13792537
G Cwf19l2 CWF19 like cell cycle control factor 2 JBrowse link 6 18,970,616 19,037,176 RGD:13792537
G Dbr1 debranching RNA lariats 1 JBrowse link 8 107,826,690 107,838,186 RGD:1624291
RGD:13792537
G Ddx23 DEAD-box helicase 23 JBrowse link 7 140,325,453 140,342,730 RGD:13792537
G Ddx39a DExD-box helicase 39A JBrowse link 19 24,846,530 24,854,886 RGD:1624291
RGD:13792537
G Ddx39b DExD-box helicase 39B JBrowse link 20 4,806,103 4,818,600 RGD:1624291
RGD:13792537
G Ddx41 DEAD-box helicase 41 JBrowse link 17 9,631,925 9,637,317 RGD:1624291
RGD:13792537
G Ddx46 DEAD-box helicase 46 JBrowse link 17 9,475,275 9,519,545 RGD:13792537
G Dhx16 DEAH-box helicase 16 JBrowse link 20 3,368,971 3,386,087 RGD:1624291
G Dhx38 DEAH-box helicase 38 JBrowse link 19 42,110,291 42,127,540 RGD:1624291
RGD:13792537
G Dhx40 DEAH-box helicase 40 JBrowse link 10 74,081,442 74,119,032 RGD:13792537
G Dhx8 DEAH-box helicase 8 JBrowse link 10 89,645,979 89,683,839 RGD:1624291
G Eftud2 elongation factor Tu GTP binding domain containing 2 JBrowse link 10 90,932,071 90,983,971 RGD:1624291
RGD:13792537
G Eif4a3 eukaryotic translation initiation factor 4A3 JBrowse link 10 108,415,201 108,425,195 RGD:1600115
RGD:1624291
G Gpkow G patch domain and KOW motifs JBrowse link X 15,636,567 15,651,332 RGD:1624291
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 JBrowse link 4 81,237,496 81,241,281 RGD:1600115
RGD:1624291
G Hnrnpc heterogeneous nuclear ribonucleoprotein C JBrowse link 15 28,486,605 28,517,353 RGD:1624291
RGD:1600115
G Hnrnpm heterogeneous nuclear ribonucleoprotein M JBrowse link 7 18,516,253 18,554,536 RGD:1600115
G Htatsf1 HIV-1 Tat specific factor 1 JBrowse link X 159,514,053 159,528,281 RGD:1600115
G Ik IK cytokine JBrowse link 18 29,587,901 29,602,705 RGD:1600115
RGD:1624291
G Isy1 ISY1 splicing factor homolog JBrowse link 4 119,721,659 119,742,349 RGD:1600115
RGD:1624291
G LOC100359574 NHP2 non-histone chromosome protein 2-like 1-like JBrowse link 1 281,863,115 281,864,546 RGD:1600115
RGD:13792537
G LOC100360750 Sm protein F-like JBrowse link 13 47,380,376 47,382,933 RGD:13792537
G LOC102548514 crooked neck-like protein 1-like JBrowse link 3 140,125,232 140,141,730 RGD:1600115
RGD:13792537
G LOC500684 hypothetical protein LOC500684 JBrowse link 6 103,932,428 103,935,122 RGD:13792537
G LOC687679 similar to small nuclear ribonucleoprotein polypeptide G JBrowse link 1 91,588,215 91,588,629 RGD:13792537
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 20 4,966,817 4,970,567 RGD:1624291
RGD:13792537
G Lsm3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 4 123,162,086 123,168,330 RGD:13792537
RGD:1624291
G Lsm4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 16 20,506,399 20,511,818 RGD:1624291
G Lsm5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 4 87,016,003 87,019,219 RGD:1624291
RGD:13792537
G Lsm6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 19 32,770,640 32,785,215 RGD:1624291
RGD:13792537
G Lsm7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 7 11,724,932 11,732,020 RGD:1624291
G Lsm8 LSM8 homolog, U6 small nuclear RNA associated JBrowse link 4 45,555,077 45,560,943 RGD:1624291
RGD:13792537
G Magohb mago homolog B, exon junction complex subunit JBrowse link 4 165,514,584 165,522,366 RGD:1624291
G Mettl14 methyltransferase like 14 JBrowse link 2 227,566,811 227,583,047 RGD:1624291
G Mettl3 methyltransferase-like 3 JBrowse link 15 28,710,299 28,721,491 RGD:1624291
RGD:13792537
G Mfap1a microfibrillar-associated protein 1A JBrowse link 3 113,428,855 113,445,435 RGD:1624291
G Ncbp1 nuclear cap binding protein subunit 1 JBrowse link 5 61,734,118 61,767,098 RGD:13792537
G Ncbp2 nuclear cap binding protein subunit 2 JBrowse link 11 72,071,838 72,103,087 RGD:13792537
G NEWGENE_1359268 Smad nuclear interacting protein 1 JBrowse link 5 143,063,206 143,070,899 RGD:1600115
G Nono non-POU domain containing, octamer-binding JBrowse link X 71,324,365 71,342,225 RGD:13792537
G Nova1 NOVA alternative splicing regulator 1 JBrowse link 6 66,960,126 67,085,836 RGD:1624291
RGD:1600115
G Nova2 NOVA alternative splicing regulator 2 JBrowse link 1 79,831,737 79,866,147 RGD:1600115
G Phf5a PHD finger protein 5A JBrowse link 7 123,095,286 123,101,851 RGD:1600115
RGD:13792537
RGD:1624291
G Plrg1 pleiotropic regulator 1 JBrowse link 2 182,040,338 182,056,669 RGD:1600115
RGD:13792537
RGD:1624291
G Ppie peptidylprolyl isomerase E JBrowse link 5 140,822,141 140,835,244 RGD:1624291
G Ppil1 peptidylprolyl isomerase like 1 JBrowse link 20 6,515,638 6,864,571 RGD:1624291
G Prpf19 pre-mRNA processing factor 19 JBrowse link 1 226,947,065 226,958,147 RGD:1624291
RGD:1600115
G Prpf3 pre-mRNA processing factor 3 JBrowse link 2 197,947,010 197,971,464 RGD:1624291
RGD:13792537
G Prpf31 pre-mRNA processing factor 31 JBrowse link 1 64,150,786 64,162,461 RGD:1624291
RGD:13792537
G Prpf38a pre-mRNA processing factor 38A JBrowse link 5 128,174,835 128,186,532 RGD:1624291
G Prpf4 pre-mRNA processing factor 4 JBrowse link 5 78,267,248 78,281,172 RGD:1624291
RGD:13792537
G Prpf40a pre-mRNA processing factor 40 homolog A JBrowse link 3 38,680,583 38,741,570 RGD:13792537
G Prpf40b pre-mRNA processing factor 40 homolog B JBrowse link 7 140,958,952 140,981,588 RGD:13792537
G Prpf6 pre-mRNA processing factor 6 JBrowse link 3 177,098,137 177,162,937 RGD:1600115
RGD:13792537
RGD:1624291
G Prpf8 pre-mRNA processing factor 8 JBrowse link 10 63,635,239 63,658,360 RGD:1624291
G Pspc1 paraspeckle component 1 JBrowse link 15 36,946,914 37,030,273 RGD:13792537
G Raver1 ribonucleoprotein, PTB-binding 1 JBrowse link 8 22,092,084 22,111,863 RGD:13792537
G Raver2 ribonucleoprotein, PTB-binding 2 JBrowse link 5 119,903,449 119,982,723 RGD:13792537
G Rbm8a RNA binding motif protein 8A JBrowse link 2 198,755,261 198,758,028 RGD:1600115
RGD:1624291
G Rbmx2 RNA binding motif protein, X-linked 2 JBrowse link X 135,550,931 135,558,440 RGD:1600115
RGD:13792537
RGD:1624291
G Rnf113a1 ring finger protein 113A1 JBrowse link X 123,806,922 123,808,049 RGD:1624291
G Rnpc3 RNA-binding region (RNP1, RRM) containing 3 JBrowse link 2 216,481,457 216,510,051 RGD:13792537
G Rnps1 RNA binding protein with serine rich domain 1 JBrowse link 10 13,786,339 13,796,720 RGD:13792537
G Rsrc1 arginine and serine rich coiled-coil 1 JBrowse link 2 164,126,898 164,533,652 RGD:1624291
RGD:1600115
G Sart1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP JBrowse link 1 220,762,496 220,771,158 RGD:1624291
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein JBrowse link 12 48,628,198 48,656,096 RGD:1624291
RGD:13792537
G Sf1 splicing factor 1 JBrowse link 1 221,735,512 221,749,216 RGD:1600115
G Sf3a1 splicing factor 3a, subunit 1 JBrowse link 14 84,393,182 84,413,931 RGD:1624291
G Sf3a2 splicing factor 3a, subunit 2 JBrowse link 7 11,777,826 11,784,373 RGD:1624291
RGD:1600115
G Sf3a3 splicing factor 3a, subunit 3 JBrowse link 5 142,702,721 142,722,350 RGD:1624291
RGD:13792537
G Sf3b1 splicing factor 3b, subunit 1 JBrowse link 9 61,594,620 61,634,510 RGD:1624291
G Sf3b2 splicing factor 3b, subunit 2 JBrowse link 1 220,645,685 220,665,611 RGD:1624291
RGD:13792537
G Sf3b3 splicing factor 3b, subunit 3 JBrowse link 19 43,392,071 43,429,582 RGD:1624291
RGD:13792537
G Sf3b4 splicing factor 3b, subunit 4 JBrowse link 2 198,312,428 198,317,180 RGD:1624291
G Sf3b5 splicing factor 3b, subunit 5 JBrowse link 1 7,101,715 7,102,427 RGD:1624291
RGD:13792537
G Sf3b6 splicing factor 3B, subunit 6 JBrowse link 6 29,991,232 29,999,668 RGD:1624291
G Sfpq splicing factor proline and glutamine rich JBrowse link 5 145,079,803 145,088,517 RGD:13792537
G Slu7 SLU7 homolog, splicing factor JBrowse link 10 29,029,556 29,044,919 RGD:1600115
G Smu1 SMU1, DNA replication regulator and spliceosomal factor JBrowse link 5 57,042,301 57,061,379 RGD:1600115
RGD:1624291
G Snip1 Smad nuclear interacting protein 1 JBrowse link 15 19,275,273 19,282,753 RGD:1600115
RGD:1624291
G Snrnp200 small nuclear ribonucleoprotein U5 subunit 200 JBrowse link 3 119,640,324 119,669,651 RGD:1600115
RGD:13792537
RGD:1624291
G Snrnp25 small nuclear ribonucleoprotein U11/U12 subunit 25 JBrowse link 10 15,685,999 15,689,338 RGD:1600115
G Snrnp35 small nuclear ribonucleoprotein U11/U12 subunit 35 JBrowse link 12 37,531,082 37,538,823 RGD:13792537
G Snrnp70 small nuclear ribonucleoprotein U1 subunit 70 JBrowse link 1 101,367,470 101,388,153 RGD:1624291
RGD:13792537
RGD:1600115
G Snrpa small nuclear ribonucleoprotein polypeptide A JBrowse link 1 83,999,670 84,008,429 RGD:13792537
G Snrpa1 small nuclear ribonucleoprotein polypeptide A' JBrowse link 1 126,961,389 126,974,453 RGD:1624291
RGD:13792537
G Snrpb small nuclear ribonucleoprotein polypeptides B and B1 JBrowse link 3 122,696,125 122,703,734 RGD:1600115
RGD:13792537
RGD:1624291
G Snrpb2 small nuclear ribonucleoprotein polypeptide B2 JBrowse link 3 137,138,082 137,147,575 RGD:1624291
RGD:13792537
G Snrpc small nuclear ribonucleoprotein polypeptide C JBrowse link 20 7,409,401 7,427,581 RGD:1624291
G Snrpd1 small nuclear ribonucleoprotein D1 polypeptide JBrowse link 18 1,866,066 1,876,613 RGD:1624291
G Snrpd2 small nuclear ribonucleoprotein D2 polypeptide JBrowse link 1 80,057,140 80,059,990 RGD:1624291
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide JBrowse link 20 14,080,562 14,095,644 RGD:1624291
G Snrpe small nuclear ribonucleoprotein polypeptide E JBrowse link 13 50,252,707 50,258,951 RGD:1624291
G Snrpf small nuclear ribonucleoprotein polypeptide F JBrowse link 7 34,478,331 34,485,034 RGD:1624291
RGD:13792537
G Snrpg small nuclear ribonucleoprotein polypeptide G JBrowse link 4 118,167,267 118,174,846 RGD:1624291
RGD:13792537
G Snrpn small nuclear ribonucleoprotein polypeptide N JBrowse link 1 195,074,328 195,096,460 RGD:13792537
G Snu13 small nuclear ribonucleoprotein 13 JBrowse link 7 123,282,754 123,287,721 RGD:1600115
RGD:13792537
RGD:1624291
G Snw1 SNW domain containing 1 JBrowse link 6 111,483,698 111,507,782 RGD:1624291
G Srrm2 serine/arginine repetitive matrix 2 JBrowse link 10 13,128,820 13,162,956 RGD:1624291
G Srsf10 serine and arginine rich splicing factor 10 JBrowse link 5 154,205,358 154,219,550 RGD:1624291
G Syf2 SYF2 pre-mRNA-splicing factor JBrowse link 5 153,269,638 153,277,562 RGD:1600115
RGD:1624291
G Tra2a transformer 2 alpha homolog JBrowse link 4 78,905,380 78,924,203 RGD:1624291
G Tra2b transformer 2 beta homolog JBrowse link 11 82,373,828 82,392,208 RGD:1624291
RGD:1600115
G Txnl4a thioredoxin-like 4A JBrowse link 18 76,725,221 76,740,673 RGD:1624291
G Txnl4b thioredoxin-like 4B JBrowse link 19 42,101,081 42,110,223 RGD:1600115
G U2af1 U2 small nuclear RNA auxiliary factor 1 JBrowse link 20 10,396,652 10,407,564 RGD:13792537
G U2af1l4 U2 small nuclear RNA auxiliary factor 1-like 4 JBrowse link 1 89,017,414 89,019,651 RGD:13792537
G U2af2 U2 small nuclear RNA auxiliary factor 2 JBrowse link 1 72,312,260 72,329,828 RGD:1624291
G Ubl5 ubiquitin-like 5 JBrowse link 8 21,663,257 21,665,049 RGD:13792537
G Usp39 ubiquitin specific peptidase 39 JBrowse link 4 100,181,408 100,211,425 RGD:1624291
G Usp49 ubiquitin specific peptidase 49 JBrowse link 9 15,314,875 15,375,365 RGD:1624291
G Wbp4 WW domain binding protein 4 JBrowse link 15 61,745,989 61,772,516 RGD:1600115
RGD:1624291
G Wdr83 WD repeat domain 83 JBrowse link 19 26,188,644 26,194,193 RGD:1600115
RGD:1624291
G Xab2 XPA binding protein 2 JBrowse link 12 2,158,391 2,170,397 RGD:1600115
RGD:13792537
RGD:1624291
G Ythdc1 YTH domain containing 1 JBrowse link 14 22,971,834 23,002,326 RGD:634512
G Zcrb1 zinc finger CCHC-type and RNA binding motif containing 1 JBrowse link 7 134,588,902 134,602,239 RGD:13792537
G Zmat2 zinc finger, matrin type 2 JBrowse link 18 29,639,991 29,644,626 RGD:1624291
RGD:13792537
G Zrsr1 zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1 JBrowse link 14 107,750,162 107,751,895 RGD:1624291
RGD:13792537
G Zrsr2 zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2 JBrowse link X 32,304,707 32,327,419 RGD:1624291
RGD:13792537
negative regulation of mRNA polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ccnt1 cyclin T1 JBrowse link 7 140,215,052 140,245,958 RGD:1624291
G Cdk9 cyclin-dependent kinase 9 JBrowse link 3 11,742,269 11,747,117 RGD:1624291
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component JBrowse link 1 175,839,140 175,869,167 RGD:1624291
G Nelfe negative elongation factor complex member E JBrowse link 20 4,530,328 4,536,085 RGD:1624291
G Rnf20 ring finger protein 20 JBrowse link 5 64,892,996 64,920,397 RGD:1624291
G Rnf40 ring finger protein 40 JBrowse link 1 199,037,472 199,052,823 RGD:1624291
G Supt5h SPT5 homolog, DSIF elongation factor subunit JBrowse link 1 85,437,780 85,466,854 RGD:1624291
G Zc3h14 zinc finger CCCH type containing 14 JBrowse link 6 122,729,834 122,767,462 RGD:13792537
RGD:1600115
negative regulation of mRNA splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acin1 apoptotic chromatin condensation inducer 1 JBrowse link 15 33,288,369 33,333,256 RGD:1624291
G Akr1c1 aldo-keto reductase family 1, member C1 JBrowse link 17 69,441,253 69,460,334 RGD:1624291
G C1qbp complement C1q binding protein JBrowse link 10 57,613,876 57,618,527 RGD:1624291
RGD:13792537
RGD:1600115
G Celf4 CUGBP, Elav-like family member 4 JBrowse link 18 17,689,090 18,079,835 RGD:1624291
G Dyrk1a dual specificity tyrosine phosphorylation regulated kinase 1A JBrowse link 11 34,858,339 34,958,733 RGD:1624291
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 JBrowse link 4 81,237,496 81,241,281 RGD:1624291
RGD:1600115
G Hnrnpk heterogeneous nuclear ribonucleoprotein K JBrowse link 17 6,664,730 6,676,753 RGD:1624291
G Hnrnpl heterogeneous nuclear ribonucleoprotein L JBrowse link 1 86,994,090 87,006,776 RGD:9999428
G Npm1 nucleophosmin 1 JBrowse link 10 18,080,949 18,091,062 RGD:1624291
G Pcbp4 poly(rC) binding protein 4 JBrowse link 8 115,154,848 115,165,706 RGD:1624291
G Ptbp1 polypyrimidine tract binding protein 1 JBrowse link 7 12,663,965 12,673,723 RGD:1624291
RGD:13792537
RGD:1600115
G Ptbp3 polypyrimidine tract binding protein 3 JBrowse link 5 76,670,074 76,756,196 RGD:1624291
RGD:13792537
G Rbm10 RNA binding motif protein 10 JBrowse link X 1,754,869 1,786,973 RGD:1624291
RGD:1600115
G Rbm42 RNA binding motif protein 42 JBrowse link 1 89,099,296 89,109,248 RGD:1624291
G Rbmxl1 RBMX like 1 JBrowse link 19 33,081,473 33,084,988 RGD:8554197
G Rnps1 RNA binding protein with serine rich domain 1 JBrowse link 10 13,786,339 13,796,720 RGD:1624291
RGD:1600115
G Sap18 Sin3A associated protein 18 JBrowse link 15 38,069,320 38,073,625 RGD:1624291
G Sfswap splicing factor SWAP JBrowse link 12 30,740,563 30,811,015 RGD:8554197
G Smptb polypyrimidine tract-binding protein JBrowse link X 17,484,839 17,486,721 RGD:13792537
G Srsf10 serine and arginine rich splicing factor 10 JBrowse link 5 154,205,358 154,219,550 RGD:1624291
G Srsf4 serine and arginine rich splicing factor 4 JBrowse link 5 150,032,999 150,060,769 RGD:1624291
G Srsf6 serine and arginine rich splicing factor 6 JBrowse link 3 159,305,345 159,310,668 RGD:1624291
G Srsf7 serine and arginine rich splicing factor 7 JBrowse link 6 2,879,312 2,886,505 RGD:1624291
G Srsf9 serine and arginine rich splicing factor 9 JBrowse link 12 47,039,714 47,046,022 RGD:1624291
RGD:1600115
G Tra2b transformer 2 beta homolog JBrowse link 11 82,373,828 82,392,208 RGD:1624291
G U2af2 U2 small nuclear RNA auxiliary factor 2 JBrowse link 1 72,312,260 72,329,828 RGD:1624291
positive regulation of mRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ccnb1 cyclin B1 JBrowse link 2 30,782,133 30,791,106 RGD:1578405
G Cdc73 cell division cycle 73 JBrowse link 13 60,403,771 60,496,511 RGD:1624291
RGD:1600115
G Dhx36 DEAH-box helicase 36 JBrowse link 2 152,785,844 152,824,549 RGD:1600115
RGD:1624291
G Leo1 LEO1 homolog, Paf1/RNA polymerase II complex component JBrowse link 8 82,380,906 82,405,293 RGD:1624291
RGD:1600115
G Ncbp1 nuclear cap binding protein subunit 1 JBrowse link 5 61,734,118 61,767,098 RGD:1624291
RGD:1600115
G Ncbp2 nuclear cap binding protein subunit 2 JBrowse link 11 72,071,838 72,103,087 RGD:1624291
G Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component JBrowse link 1 85,362,421 85,367,999 RGD:1624291
RGD:1600115
positive regulation of mRNA polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cpeb1 cytoplasmic polyadenylation element binding protein 1 JBrowse link 1 143,171,457 143,278,485 RGD:1624291
G Cpeb3 cytoplasmic polyadenylation element binding protein 3 JBrowse link 1 255,660,165 255,842,671 RGD:1624291
G Hsf1 heat shock transcription factor 1 JBrowse link 7 117,538,523 117,565,478 RGD:1624291
G Nudt21 nudix hydrolase 21 JBrowse link 19 11,451,366 11,470,637 RGD:1600115
RGD:1624291
positive regulation of mRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adarb1 adenosine deaminase, RNA-specific, B1 JBrowse link 20 11,972,352 12,101,022 RGD:10450893
positive regulation of mRNA splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07061152.1 RGD:13792537
G Celf3 CUGBP, Elav-like family member 3 JBrowse link 2 195,716,373 195,732,872 RGD:1624291
G Celf4 CUGBP, Elav-like family member 4 JBrowse link 18 17,689,090 18,079,835 RGD:1624291
G Cirbp cold inducible RNA binding protein JBrowse link 7 12,400,066 12,405,054 RGD:13792537
G Dazap1 DAZ associated protein 1 JBrowse link 7 12,289,895 12,315,897 RGD:1624291
RGD:13792537
G Eif4a3 eukaryotic translation initiation factor 4A3 JBrowse link 10 108,415,201 108,425,195 RGD:1624291
G Hmx2 H6 family homeobox 2 JBrowse link 1 203,515,605 203,523,266 RGD:1624291
G Hspa8 heat shock protein family A (Hsp70) member 8 JBrowse link 8 44,989,401 44,993,261 RGD:1624291
G Lmntd2 lamin tail domain containing 2 JBrowse link 1 214,197,126 214,202,828 RGD:1624291
G Ncbp1 nuclear cap binding protein subunit 1 JBrowse link 5 61,734,118 61,767,098 RGD:1624291
G Ncl nucleolin JBrowse link 9 93,369,119 93,377,643 RGD:13792537
G Nup98 nucleoporin 98 and 96 precursor JBrowse link 1 167,213,866 167,308,851 RGD:1624291
RGD:1600115
G Obi1 ORC ubiquitin ligase 1 JBrowse link 15 88,632,089 88,670,325 RGD:1624291
G Prdx6 peroxiredoxin 6 JBrowse link 13 79,077,567 79,088,113 RGD:1624291
G Prpf19 pre-mRNA processing factor 19 JBrowse link 1 226,947,065 226,958,147 RGD:1624291
G Rbm3 RNA binding motif protein 3 JBrowse link X 15,098,880 15,102,344 RGD:13792537
G Rbmx RNA binding motif protein, X-linked JBrowse link X 159,881,835 159,891,405 RGD:13792537
G Rbmxl1 RBMX like 1 JBrowse link 19 33,081,473 33,084,988 RGD:2316827
RGD:13792537
G Rbmxl1b RNA binding motif protein, X-linked-like 1B JBrowse link 4 42,186,612 42,188,294 RGD:13792537
G Rbmy1j RNA binding motif protein, Y-linked, family 1, member J JBrowse link Y 380,337 390,669 RGD:13792537
G Sf3b4 splicing factor 3b, subunit 4 JBrowse link 2 198,312,428 198,317,180 RGD:1624291
RGD:13792537
G Slc39a5 solute carrier family 39 member 5 JBrowse link 7 2,813,875 2,819,917 RGD:1624291
G Snrnp70 small nuclear ribonucleoprotein U1 subunit 70 JBrowse link 1 101,367,470 101,388,153 RGD:1624291
G Snw1 SNW domain containing 1 JBrowse link 6 111,483,698 111,507,782 RGD:1624291
G Thrap3 thyroid hormone receptor associated protein 3 JBrowse link 5 144,178,248 144,221,318 RGD:1624291
RGD:1600115
G Tra2a transformer 2 alpha homolog JBrowse link 4 78,905,380 78,924,203 RGD:1624291
RGD:13792537
G Tra2b transformer 2 beta homolog JBrowse link 11 82,373,828 82,392,208 RGD:1624291
RGD:13792537
RGD:1600115
G Zfp64 zinc finger protein 64 JBrowse link 3 165,713,070 165,741,932 RGD:1624291
pre-mRNA cleavage required for polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AC096468.1 RGD:13792537
G Cpsf4 cleavage and polyadenylation specific factor 4 JBrowse link 12 11,199,893 11,215,690 RGD:13792537
G Cpsf6 cleavage and polyadenylation specific factor 6 JBrowse link 7 60,385,688 60,417,661 RGD:1624291
G Cpsf7 cleavage and polyadenylation specific factor 7 JBrowse link 1 226,572,399 226,596,185 RGD:1600115
RGD:1624291
G Cstf2 cleavage stimulation factor subunit 2 JBrowse link X 104,882,726 104,909,746 RGD:13792537
G Cstf2t cleavage stimulation factor subunit 2, tau variant JBrowse link 1 249,574,954 249,578,520 RGD:13792537
G Fip1l1 factor interacting with PAPOLA and CPSF1 JBrowse link 14 36,150,381 36,208,395 RGD:13792537
RGD:1600115
G Ncbp1 nuclear cap binding protein subunit 1 JBrowse link 5 61,734,118 61,767,098 RGD:1624291
RGD:1600115
G Ncbp2 nuclear cap binding protein subunit 2 JBrowse link 11 72,071,838 72,103,087 RGD:1624291
G Nudt21 nudix hydrolase 21 JBrowse link 19 11,451,366 11,470,637 RGD:1624291
G Tut1 terminal uridylyl transferase 1, U6 snRNA-specific JBrowse link 1 225,151,462 225,162,445 RGD:1624291
RGD:1600115
recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdc73 cell division cycle 73 JBrowse link 13 60,403,771 60,496,511 RGD:13792537
G Polr2d RNA polymerase II subunit D JBrowse link 18 24,570,762 24,577,894 RGD:13792537
recruitment of mRNA capping enzyme to RNA polymerase II holoenzyme complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ramac RNA guanine-7 methyltransferase activating subunit JBrowse link 1 143,583,675 143,589,563 RGD:1624291
regulation of alternative mRNA splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07051190.1 RGD:13792537
G AABR07055789.1 RGD:13792537
G Celf1 CUGBP, Elav-like family member 1 JBrowse link 3 79,768,900 79,844,548 RGD:13792537
G Celf2 CUGBP, Elav-like family member 2 JBrowse link 17 75,259,269 75,660,154 RGD:13792537
G Celf3 CUGBP, Elav-like family member 3 JBrowse link 2 195,716,373 195,732,872 RGD:1624291
RGD:13792537
G Celf4 CUGBP, Elav-like family member 4 JBrowse link 18 17,689,090 18,079,835 RGD:1624291
RGD:13792537
G Celf5 CUGBP, Elav-like family member 5 JBrowse link 7 11,095,449 11,119,941 RGD:1624291
RGD:13792537
G Celf6 CUGBP, Elav-like family member 6 JBrowse link 8 64,364,491 64,428,452 RGD:1624291
RGD:13792537
G Ddx17 DEAD-box helicase 17 JBrowse link 7 120,761,843 120,765,012 RGD:1624291
G Ddx5 DEAD-box helicase 5 JBrowse link 10 94,979,759 94,988,461 RGD:1624291
G Dyrk1a dual specificity tyrosine phosphorylation regulated kinase 1A JBrowse link 11 34,858,339 34,958,733 RGD:8554210
G Eif4a3 eukaryotic translation initiation factor 4A3 JBrowse link 10 108,415,201 108,425,195 RGD:1600115
G Fam172a family with sequence similarity 172, member A JBrowse link 2 4,942,795 5,547,744 RGD:1624291
G Fblim1 filamin binding LIM protein 1 JBrowse link 5 160,122,466 160,158,921 RGD:1600115
RGD:13792537
G Fmr1 FMRP translational regulator 1 JBrowse link X 154,684,924 154,722,369 RGD:1600115
RGD:13792537
RGD:1624291
G Fxr1 FMR1 autosomal homolog 1 JBrowse link 2 120,529,716 120,570,356 RGD:13792537
G Fxr2 FMR1 autosomal homolog 2 JBrowse link 10 56,237,814 56,257,877 RGD:13792537
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 JBrowse link 7 144,865,302 144,871,592 RGD:1624291
RGD:1600115
G Hnrnpl heterogeneous nuclear ribonucleoprotein L JBrowse link 1 86,994,090 87,006,776 RGD:1624291
RGD:13792537
RGD:1600115
G Hnrnpu heterogeneous nuclear ribonucleoprotein U JBrowse link 13 96,222,093 96,238,845 RGD:1600115
RGD:13792537
RGD:1624291
G Ik IK cytokine JBrowse link 18 29,587,901 29,602,705 RGD:13792537
G Khdrbs1 KH RNA binding domain containing, signal transduction associated 1 JBrowse link 5 147,927,145 147,953,093 RGD:1600115
RGD:1624291
G LOC108348453 calsequestrin-1-like JBrowse link 16 6,440,153 6,467,211 RGD:13792537
G Magoh mago homolog, exon junction complex subunit JBrowse link 5 127,480,465 127,487,617 RGD:1624291
RGD:1600115
G Mbnl1 muscleblind-like splicing regulator 1 JBrowse link 2 150,698,248 150,867,791 RGD:13792537
G Mbnl2 muscleblind-like splicing regulator 2 JBrowse link 15 105,640,097 105,797,933 RGD:1624291
RGD:13792537
G Mbnl3 muscleblind-like splicing regulator 3 JBrowse link X 138,378,674 138,473,365 RGD:13792537
G Myod1 myogenic differentiation 1 JBrowse link 1 102,396,538 102,399,248 RGD:1624291
RGD:8553451
RGD:1600115
G Nsrp1 nuclear speckle splicing regulatory protein 1 JBrowse link 10 63,098,115 63,131,779 RGD:1624291
RGD:1600115
G Ptbp1 polypyrimidine tract binding protein 1 JBrowse link 7 12,663,965 12,673,723 RGD:1600115
RGD:1624291
G Rbfox1 RNA binding fox-1 homolog 1 JBrowse link 10 8,312,961 10,437,778 RGD:1624291
RGD:13792537
G Rbfox2 RNA binding fox-1 homolog 2 JBrowse link 7 118,157,093 118,396,733 RGD:1624291
RGD:13792537
G Rbfox3 RNA binding fox-1 homolog 3 JBrowse link 10 107,517,916 107,850,764 RGD:1624291
RGD:13792537
G Rbm10 RNA binding motif protein 10 JBrowse link X 1,754,869 1,786,973 RGD:1600115
G Rbm11 RNA binding motif protein 11 JBrowse link 11 14,005,704 14,015,723 RGD:1624291
RGD:13792537
G Rbm15 RNA binding motif protein 15 JBrowse link 2 210,079,678 210,090,200 RGD:1624291
G Rbm15b RNA binding motif protein 15B JBrowse link 8 115,618,242 115,623,068 RGD:1624291
RGD:13792537
G Rbm17 RNA binding motif protein 17 JBrowse link 17 70,586,345 70,603,289 RGD:13792537
G Rbm19 RNA binding motif protein 19 JBrowse link 12 41,907,978 41,993,969 RGD:13792537
G Rbm24 RNA binding motif protein 24 JBrowse link 17 18,671,037 18,682,876 RGD:1624291
G Rbm25 RNA binding motif protein 25 JBrowse link 6 107,117,888 107,165,538 RGD:1624291
G Rbm25l1 RNA binding motif protein 25-like 1 JBrowse link 10 10,457,316 10,460,540 RGD:13792537
G Rbm4 RNA binding motif protein 4 JBrowse link 1 220,038,403 220,049,756 RGD:1624291
G Rbm4b RNA binding motif protein 4B JBrowse link 1 220,009,397 220,019,488 RGD:13792537
G Rbm5 RNA binding motif protein 5 JBrowse link 8 116,502,941 116,532,178 RGD:1600115
RGD:1624291
G Rbm7 RNA binding motif protein 7 JBrowse link 8 52,823,094 52,828,134 RGD:13792537
G Rbm8a RNA binding motif protein 8A JBrowse link 2 198,755,261 198,758,028 RGD:1624291
RGD:13792537
RGD:1600115
G Rbmx RNA binding motif protein, X-linked JBrowse link X 159,881,835 159,891,405 RGD:1624291
G Rbmxl1 RBMX like 1 JBrowse link 19 33,081,473 33,084,988 RGD:2316827
G Rest RE1-silencing transcription factor JBrowse link 14 33,131,985 33,152,019 RGD:1600115
RGD:1624291
G Rnps1 RNA binding protein with serine rich domain 1 JBrowse link 10 13,786,339 13,796,720 RGD:1624291
RGD:13792537
RGD:1600115
G Sap18 Sin3A associated protein 18 JBrowse link 15 38,069,320 38,073,625 RGD:1624291
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein JBrowse link 12 48,628,198 48,656,096 RGD:13792537
G Smu1 SMU1, DNA replication regulator and spliceosomal factor JBrowse link 5 57,042,301 57,061,379 RGD:1600115
G Srek1 splicing regulatory glutamic acid and lysine rich protein 1 JBrowse link 2 33,806,035 33,841,594 RGD:1600115
G Srrm4 serine/arginine repetitive matrix 4 JBrowse link 12 45,726,192 45,884,644 RGD:1624291
G Srsf1 serine and arginine rich splicing factor 1 JBrowse link 10 75,334,200 75,341,197 RGD:13792537
G Srsf10 serine and arginine rich splicing factor 10 JBrowse link 5 154,205,358 154,219,550 RGD:13792537
G Srsf12 serine and arginine rich splicing factor 12 JBrowse link 5 48,456,777 48,484,017 RGD:1624291
RGD:13792537
G Srsf2 serine and arginine rich splicing factor 2 JBrowse link 10 105,792,779 105,795,986 RGD:1624291
RGD:13792537
G Srsf3 serine and arginine rich splicing factor 3 JBrowse link 20 6,288,285 6,298,218 RGD:13792537
G Srsf4 serine and arginine rich splicing factor 4 JBrowse link 5 150,032,999 150,060,769 RGD:13792537
G Srsf5 serine and arginine rich splicing factor 5 JBrowse link 6 104,611,026 104,640,033 RGD:13792537
G Srsf6 serine and arginine rich splicing factor 6 JBrowse link 3 159,305,345 159,310,668 RGD:1600115
RGD:13792537
RGD:1624291
G Srsf7 serine and arginine rich splicing factor 7 JBrowse link 6 2,879,312 2,886,505 RGD:13792537
G Srsf8 serine and arginine rich splicing factor 8 JBrowse link X
X
49,529,525
49,644,973
49,530,166
49,705,870
RGD:13792537
G Srsf9 serine and arginine rich splicing factor 9 JBrowse link 12 47,039,714 47,046,022 RGD:13792537
G Thrap3 thyroid hormone receptor associated protein 3 JBrowse link 5 144,178,248 144,221,318 RGD:1624291
RGD:1600115
G Tra2b transformer 2 beta homolog JBrowse link 11 82,373,828 82,392,208 RGD:1600115
RGD:1624291
G Wtap WT1 associated protein JBrowse link 1 47,942,500 47,967,633 RGD:1624291
RGD:13792537
G Ythdc1 YTH domain containing 1 JBrowse link 14 22,971,834 23,002,326 RGD:1624291
G Zbtb7a zinc finger and BTB domain containing 7a JBrowse link 7 11,429,266 11,446,119 RGD:1600115
RGD:1624291
G Zc3h10 zinc finger CCCH type containing 10 JBrowse link 7 2,968,428 2,972,521 RGD:13792537
regulation of mRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ahcyl1 adenosylhomocysteinase-like 1 JBrowse link 2 210,438,884 210,474,350 RGD:1624291
G Papola poly (A) polymerase alpha JBrowse link 6 129,609,068 129,662,002 RGD:1624291
G Zfp36l1 zinc finger protein 36, C3H type-like 1 JBrowse link 6 103,308,032 103,313,074 RGD:1624291
regulation of mRNA polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ncbp1 nuclear cap binding protein subunit 1 JBrowse link 5 61,734,118 61,767,098 RGD:1624291
RGD:1600115
G Ncbp2 nuclear cap binding protein subunit 2 JBrowse link 11 72,071,838 72,103,087 RGD:1624291
G Snrpa small nuclear ribonucleoprotein polypeptide A JBrowse link 1 83,999,670 84,008,429 RGD:10755561
G Zc3h3 zinc finger CCCH type containing 3 JBrowse link 7 116,787,762 116,872,536 RGD:1624291
regulation of mRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adam3a ADAM metallopeptidase domain 3A JBrowse link 16 72,086,878 72,136,685 RGD:1624291
G Cdk11b cyclin-dependent kinase 11B JBrowse link 5 173,051,900 173,078,049 RGD:1624291
G Dhx9 DExH-box helicase 9 JBrowse link 13 70,885,503 70,922,278 RGD:1624291
RGD:13792537
G Iws1 interacts with SUPT6H, CTD assembly factor 1 JBrowse link 18 24,849,508 24,891,339 RGD:1600115
RGD:13792537
RGD:1624291
G Ncbp1 nuclear cap binding protein subunit 1 JBrowse link 5 61,734,118 61,767,098 RGD:13792537
G Nova1 NOVA alternative splicing regulator 1 JBrowse link 6 66,960,126 67,085,836 RGD:708602
G Ptcd2 pentatricopeptide repeat domain 2 JBrowse link 2 29,570,581 29,598,328 RGD:1624291
RGD:13792537
G Safb scaffold attachment factor B JBrowse link 9 10,450,216 10,471,174 RGD:634000
RGD:13792537
RGD:1600115
G Safb2 scaffold attachment factor B2 JBrowse link 9 10,471,618 10,492,775 RGD:13792537
G Sltm SAFB-like, transcription modulator JBrowse link 8 76,977,698 77,022,847 RGD:13792537
G Srpk1 SRSF protein kinase 1 JBrowse link 20 5,829,412 5,865,877 RGD:1624291
RGD:13792537
G Srpk2 SRSF protein kinase 2 JBrowse link 4 7,994,025 8,187,455 RGD:13792537
G Srpk3 SRSF protein kinase 3 JBrowse link X 157,008,773 157,014,342 RGD:13792537
G Supt6h SPT6 homolog, histone chaperone and transcription elongation factor JBrowse link 10 65,470,470 65,507,581 RGD:1624291
RGD:13792537
regulation of mRNA splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase JBrowse link 10 105,781,752 105,787,803 RGD:1624291
RGD:1600115
G Khdrbs1 KH RNA binding domain containing, signal transduction associated 1 JBrowse link 5 147,927,145 147,953,093 RGD:1624291
RGD:13792537
G Khdrbs2 KH RNA binding domain containing, signal transduction associated 2 JBrowse link 9 39,501,431 40,008,707 RGD:1624291
RGD:13792537
G Khdrbs3 KH RNA binding domain containing, signal transduction associated 3 JBrowse link 7 110,031,819 110,179,475 RGD:1600115
RGD:13792537
RGD:1624291
G Mettl16 methyltransferase like 16 JBrowse link 10 61,626,595 61,682,947 RGD:1624291
RGD:1600115
G Rbm42 RNA binding motif protein 42 JBrowse link 1 89,099,296 89,109,248 RGD:13792537
G RGD1305178 similar to Hypothetical protein MGC11690 JBrowse link 3 9,813,914 9,822,222 RGD:13792537
G Son SON DNA and RNA binding protein JBrowse link 11 31,806,598 31,837,769 RGD:1624291
RGD:13792537
G Srsf10 serine and arginine rich splicing factor 10 JBrowse link 5 154,205,358 154,219,550 RGD:1624291
G Srsf3 serine and arginine rich splicing factor 3 JBrowse link 20 6,288,285 6,298,218 RGD:1624291
G Tia1 TIA1 cytotoxic granule-associated RNA binding protein JBrowse link 4 118,207,845 118,238,246 RGD:1624291
G Ythdc1 YTH domain containing 1 JBrowse link 14 22,971,834 23,002,326 RGD:1600115
RGD:1624291
spliceosomal complex assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Crnkl1 crooked neck pre-mRNA splicing factor 1 JBrowse link 6 18,349,226 18,351,540 RGD:1624291
RGD:13792537
RGD:1600115
G Ddx39b DExD-box helicase 39B JBrowse link 20 4,806,103 4,818,600 RGD:1624291
G Gcfc2 GC-rich sequence DNA-binding factor 2 JBrowse link 4 112,662,556 112,700,505 RGD:1624291
G Gemin2 gem (nuclear organelle) associated protein 2 JBrowse link 6 80,108,751 80,122,382 RGD:1600115
G Gemin6 gem (nuclear organelle) associated protein 6 JBrowse link 6 2,907,040 2,911,577 RGD:1600115
G LOC102548514 crooked neck-like protein 1-like JBrowse link 3 140,125,232 140,141,730 RGD:1600115
RGD:13792537
G Ncbp1 nuclear cap binding protein subunit 1 JBrowse link 5 61,734,118 61,767,098 RGD:1624291
G Prpf19 pre-mRNA processing factor 19 JBrowse link 1 226,947,065 226,958,147 RGD:1624291
G Rbm5 RNA binding motif protein 5 JBrowse link 8 116,502,941 116,532,178 RGD:1624291
RGD:1600115
G Scaf11 SR-related CTD-associated factor 11 JBrowse link 7 137,804,019 137,856,337 RGD:1624291
G Sf3a2 splicing factor 3a, subunit 2 JBrowse link 7 11,777,826 11,784,373 RGD:13792537
G Sf3b1 splicing factor 3b, subunit 1 JBrowse link 9 61,594,620 61,634,510 RGD:13792537
G Smn1 survival of motor neuron 1, telomeric JBrowse link 2 30,360,101 30,371,147 RGD:1624291
G Srpk1 SRSF protein kinase 1 JBrowse link 20 5,829,412 5,865,877 RGD:13792537
G Srpk2 SRSF protein kinase 2 JBrowse link 4 7,994,025 8,187,455 RGD:1624291
RGD:13792537
G Srpk3 SRSF protein kinase 3 JBrowse link X 157,008,773 157,014,342 RGD:13792537
G Usp39 ubiquitin specific peptidase 39 JBrowse link 4 100,181,408 100,211,425 RGD:1624291
G Zrsr2 zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2 JBrowse link X 32,304,707 32,327,419 RGD:1624291
spliceosomal complex disassembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dhx8 DEAH-box helicase 8 JBrowse link 10 89,645,979 89,683,839 RGD:13792537
G Tfip11 tuftelin interacting protein 11 JBrowse link 12 50,320,820 50,333,052 RGD:1624291
RGD:13792537
RGD:1600115
spliceosomal snRNP assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07042226.1 RGD:1600115
G AC096024.2 RGD:1600115
G Clns1a chloride nucleotide-sensitive channel 1A JBrowse link 1 162,676,246 162,696,549 RGD:1600115
RGD:1624291
G Coil coilin JBrowse link 10 76,320,676 76,336,169 RGD:13792537
G Ddx20 DEAD-box helicase 20 JBrowse link 2 208,144,142 208,154,764 RGD:1624291
RGD:13792537
G Gemin2 gem (nuclear organelle) associated protein 2 JBrowse link 6 80,108,751 80,122,382 RGD:1624291
RGD:13792537
RGD:1600115
G Gemin4 gem (nuclear organelle) associated protein 4 JBrowse link 10 64,364,808 64,375,885 RGD:1624291
RGD:13792537
G Gemin5 gem (nuclear organelle) associated protein 5 JBrowse link 10 43,552,260 43,599,241 RGD:1624291
G Gemin6 gem (nuclear organelle) associated protein 6 JBrowse link 6 2,907,040 2,911,577 RGD:1624291
RGD:13792537
G Gemin7 gem (nuclear organelle) associated protein 7 JBrowse link 1 80,473,966 80,487,976 RGD:1624291
G Gemin8 gem (nuclear organelle) associated protein 8 JBrowse link X 29,806,605 29,825,439 RGD:1624291
RGD:13792537
G Lsm4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 16 20,506,399 20,511,818 RGD:13792537
G Prmt5 protein arginine methyltransferase 5 JBrowse link 15 33,156,508 33,165,893 RGD:1624291
G Prmt7 protein arginine methyltransferase 7 JBrowse link 19 38,189,605 38,237,155 RGD:1624291
RGD:1600115
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein JBrowse link 12 48,628,198 48,656,096 RGD:1624291
G Smn1 survival of motor neuron 1, telomeric JBrowse link 2 30,360,101 30,371,147 RGD:1624291
RGD:1600115
G Snrpb small nuclear ribonucleoprotein polypeptides B and B1 JBrowse link 3 122,696,125 122,703,734 RGD:1624291
RGD:1600115
G Snrpc small nuclear ribonucleoprotein polypeptide C JBrowse link 20 7,409,401 7,427,581 RGD:1624291
G Snrpd1 small nuclear ribonucleoprotein D1 polypeptide JBrowse link 18 1,866,066 1,876,613 RGD:1624291
RGD:13792537
G Snrpd2 small nuclear ribonucleoprotein D2 polypeptide JBrowse link 1 80,057,140 80,059,990 RGD:1624291
RGD:13792537
G Snrpd2l small nuclear ribonucleoprotein D2-like JBrowse link 20 28,872,902 28,873,434 RGD:13792537
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide JBrowse link 20 14,080,562 14,095,644 RGD:1624291
RGD:13792537
G Snrpe small nuclear ribonucleoprotein polypeptide E JBrowse link 13 50,252,707 50,258,951 RGD:1624291
G Snrpf small nuclear ribonucleoprotein polypeptide F JBrowse link 7 34,478,331 34,485,034 RGD:1624291
G Snrpg small nuclear ribonucleoprotein polypeptide G JBrowse link 4 118,167,267 118,174,846 RGD:1624291
G Strap serine/threonine kinase receptor associated protein JBrowse link 4 171,730,629 171,744,877 RGD:1624291
RGD:1600115
spliceosomal tri-snRNP complex assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aar2 AAR2 splicing factor JBrowse link 3 152,626,738 152,648,365 RGD:13792537
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 20 4,966,817 4,970,567 RGD:1624291
G Prpf19 pre-mRNA processing factor 19 JBrowse link 1 226,947,065 226,958,147 RGD:1624291
RGD:1600115
G Prpf3 pre-mRNA processing factor 3 JBrowse link 2 197,947,010 197,971,464 RGD:1624291
G Prpf31 pre-mRNA processing factor 31 JBrowse link 1 64,150,786 64,162,461 RGD:1624291
G Prpf6 pre-mRNA processing factor 6 JBrowse link 3 177,098,137 177,162,937 RGD:1624291
RGD:13792537
G Prpf8 pre-mRNA processing factor 8 JBrowse link 10 63,635,239 63,658,360 RGD:1624291
RGD:13792537
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein JBrowse link 12 48,628,198 48,656,096 RGD:1624291
G Usp4 ubiquitin specific peptidase 4 JBrowse link 8 117,126,692 117,171,012 RGD:1624291
RGD:1600115
spliceosome conformational change to release U4 (or U4atac) and U1 (or U11) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Snrnp200 small nuclear ribonucleoprotein U5 subunit 200 JBrowse link 3 119,640,324 119,669,651 RGD:13792537
U2-type prespliceosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sf3a1 splicing factor 3a, subunit 1 JBrowse link 14 84,393,182 84,413,931 RGD:1624291
G Sf3a2 splicing factor 3a, subunit 2 JBrowse link 7 11,777,826 11,784,373 RGD:1624291
RGD:1600115
G Sf3a3 splicing factor 3a, subunit 3 JBrowse link 5 142,702,721 142,722,350 RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19336
    metabolic process 11555
      organic substance metabolic process 10949
        macromolecule metabolic process 9418
          gene expression 5525
            RNA processing 859
              mRNA processing 425
                7-methylguanosine mRNA capping + 6
                chloroplast mRNA processing 0
                mRNA 3'-end processing + 58
                mRNA cleavage involved in mRNA processing + 12
                mRNA splicing, via endonucleolytic cleavage and ligation 1
                mRNA splicing, via spliceosome + 279
                mitochondrial mRNA processing + 2
                negative regulation of mRNA processing + 34
                polycistronic mRNA processing + 0
                positive regulation of mRNA processing + 39
                regulation of mRNA processing + 153
Path 2
Term Annotations click to browse term
  biological_process 19336
    metabolic process 11555
      cellular metabolic process 10567
        cellular aromatic compound metabolic process 5484
          nucleobase-containing compound metabolic process 5258
            nucleic acid metabolic process 4770
              RNA metabolic process 4282
                RNA processing 859
                  mRNA processing 425
                    7-methylguanosine mRNA capping + 6
                    chloroplast mRNA processing 0
                    mRNA 3'-end processing + 58
                    mRNA cleavage involved in mRNA processing + 12
                    mRNA splicing, via endonucleolytic cleavage and ligation 1
                    mRNA splicing, via spliceosome + 279
                    mitochondrial mRNA processing + 2
                    negative regulation of mRNA processing + 34
                    polycistronic mRNA processing + 0
                    positive regulation of mRNA processing + 39
                    regulation of mRNA processing + 153
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.