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ONTOLOGY REPORT - ANNOTATIONS


Term:mRNA processing
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Accession:GO:0006397 term browser browse the term
Definition:Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
Synonyms:related_synonym: mRNA maturation
 xref: MIPS_funcat:11.04.03


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mRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G A1CF APOBEC1 complementation factor JBrowse link 10 50,799,409 50,885,675 RGD:2290271
G ACIN1 apoptotic chromatin condensation inducer 1 JBrowse link 14 23,058,564 23,095,614 RGD:2290271
G ADAR adenosine deaminase RNA specific JBrowse link 1 154,582,057 154,631,560 RGD:2290271
G ADARB1 adenosine deaminase RNA specific B1 JBrowse link 21 45,074,578 45,226,563 RGD:2290271
G ADARB2 adenosine deaminase RNA specific B2 (inactive) JBrowse link 10 1,177,313 1,737,525 RGD:2290271
G AFF2 AF4/FMR2 family member 2 JBrowse link X 148,500,617 149,000,663 RGD:2290271
G AICDA activation induced cytidine deaminase JBrowse link 12 8,602,170 8,612,970 RGD:2290271
G AKAP17A A-kinase anchoring protein 17A JBrowse link X
Y
1,591,604
1,591,604
1,602,520
1,602,520
RGD:2290271
G AKAP8L A-kinase anchoring protein 8 like JBrowse link 19 15,380,050 15,418,988 RGD:2290271
G ALKBH5 alkB homolog 5, RNA demethylase JBrowse link 17 18,183,828 18,209,954 RGD:2290271
G APOBEC1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 JBrowse link 12 7,649,400 7,670,599 RGD:2290271
G APOBEC2 apolipoprotein B mRNA editing enzyme catalytic subunit 2 JBrowse link 6 41,053,201 41,064,891 RGD:2290271
G APOBEC4 apolipoprotein B mRNA editing enzyme catalytic polypeptide like 4 JBrowse link 1 183,646,275 183,653,316 RGD:2290271
G ARL6IP4 ADP ribosylation factor like GTPase 6 interacting protein 4 JBrowse link 12 122,980,060 122,982,913 RGD:2290271
G AURKAIP1 aurora kinase A interacting protein 1 JBrowse link 1 1,373,730 1,375,516 RGD:2290271
G BRDT bromodomain testis associated JBrowse link 1 91,949,371 92,014,428 RGD:2290271
G C1QBP complement C1q binding protein JBrowse link 17 5,432,777 5,439,155 RGD:2290271
G CASC3 CASC3 exon junction complex subunit JBrowse link 17 40,140,506 40,172,172 RGD:2290271
G CCAR2 cell cycle and apoptosis regulator 2 JBrowse link 8 22,604,740 22,621,514 RGD:2290271
G CDK12 cyclin dependent kinase 12 JBrowse link 17 39,461,486 39,567,560 RGD:2290271
G CELF1 CUGBP Elav-like family member 1 JBrowse link 11 47,465,937 47,565,539 RGD:2290271
G CIR1 corepressor interacting with RBPJ, CIR1 JBrowse link 2 174,348,022 174,395,712 RGD:2290271
G CLASRP CLK4 associating serine/arginine rich protein JBrowse link 19 45,039,045 45,070,956 RGD:2290271
G CNOT6L CCR4-NOT transcription complex subunit 6 like JBrowse link 4 77,713,387 77,820,269 RGD:2290271
G CPEB1 cytoplasmic polyadenylation element binding protein 1 JBrowse link 15 82,543,201 82,648,795 RGD:2290271
G CPSF6 cleavage and polyadenylation specific factor 6 JBrowse link 12 69,239,568 69,274,358 RGD:2290271
G CSDC2 cold shock domain containing C2 JBrowse link 22 41,561,010 41,576,666 RGD:2290271
G CSTF3 cleavage stimulation factor subunit 3 JBrowse link 11 33,084,584 33,161,491 RGD:2290271
G DDX47 DEAD-box helicase 47 JBrowse link 12 12,813,346 12,829,981 RGD:2290271
G DHX15 DEAH-box helicase 15 JBrowse link 4 24,527,475 24,584,554 RGD:2290271
G ECD ecdysoneless cell cycle regulator JBrowse link 10 73,133,668 73,168,095 RGD:2290271
G ELAVL4 ELAV like RNA binding protein 4 JBrowse link 1 50,048,055 50,203,772 RGD:2290271
G ERN2 endoplasmic reticulum to nucleus signaling 2 JBrowse link 16 23,690,310 23,713,248 RGD:2290271
G ESRP1 epithelial splicing regulatory protein 1 JBrowse link 8 94,640,999 94,707,466 RGD:2290271
G FAM172A family with sequence similarity 172 member A JBrowse link 5 93,615,130 94,111,699 RGD:2290271
G FASTKD5 FAST kinase domains 5 JBrowse link 20 3,146,519 3,159,865 RGD:2290271
G FMR1 FMRP translational regulator 1 JBrowse link X 147,911,919 147,951,127 RGD:2290271
G GEMIN2 gem nuclear organelle associated protein 2 JBrowse link 14 39,114,261 39,136,973 RGD:2290271
G GPATCH1 G-patch domain containing 1 JBrowse link 19 33,080,880 33,130,542 RGD:2290271
G H2AB1 H2A.B variant histone 1 JBrowse link X 154,884,972 154,885,558 RGD:2290271
G H2AB2 H2A.B variant histone 2 JBrowse link X 155,380,709 155,381,299 RGD:2290271
G H2AB3 H2A.B variant histone 3 JBrowse link X 155,459,419 155,460,005 RGD:2290271
G HABP4 hyaluronan binding protein 4 JBrowse link 9 96,450,162 96,491,336 RGD:2290271
G HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 JBrowse link 5 137,745,651 137,754,363 RGD:2290271
G HNRNPA1L2 heterogeneous nuclear ribonucleoprotein A1 like 2 JBrowse link 13 52,617,525 52,643,796 RGD:2290271
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 JBrowse link 7 26,189,920 26,200,775 RGD:2290271
G HNRNPL heterogeneous nuclear ribonucleoprotein L JBrowse link 19 38,836,370 38,852,347 RGD:2290271
G HNRNPLL heterogeneous nuclear ribonucleoprotein L like JBrowse link 2 38,561,969 38,603,036 RGD:2290271
G HNRNPR heterogeneous nuclear ribonucleoprotein R JBrowse link 1 23,304,688 23,344,316 RGD:2290271
G HSF1 heat shock transcription factor 1 JBrowse link 8 144,291,603 144,314,720 RGD:2290271
G IWS1 interacts with SUPT6H, CTD assembly factor 1 JBrowse link 2 127,480,807 127,526,886 RGD:2290271
G JMJD6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase JBrowse link 17 76,712,830 76,726,799 RGD:2290271
G KHDRBS1 KH RNA binding domain containing, signal transduction associated 1 JBrowse link 1 32,013,868 32,060,850 RGD:2290271
G KHDRBS2 KH RNA binding domain containing, signal transduction associated 2 JBrowse link 6 61,542,697 62,286,227 RGD:2290271
G KHDRBS3 KH RNA binding domain containing, signal transduction associated 3 JBrowse link 8 135,457,456 135,656,516 RGD:2290271
G KHSRP KH-type splicing regulatory protein JBrowse link 19 6,413,102 6,424,811 RGD:2290271
G KIN Kin17 DNA and RNA binding protein JBrowse link 10 7,750,962 7,787,993 RGD:2290271
G LGALS3 galectin 3 JBrowse link 14 55,129,252 55,145,430 RGD:2290271
G LSM1 LSM1 homolog, mRNA degradation associated JBrowse link 8 38,163,321 38,176,730 RGD:2290271
G LSM10 LSM10, U7 small nuclear RNA associated JBrowse link 1 36,393,436 36,397,908 RGD:2290271
G LSM3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 3 14,178,817 14,201,122 RGD:2290271
G LSM5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 7 32,485,338 32,495,283 RGD:2290271
G MBNL1 muscleblind like splicing regulator 1 JBrowse link 3 152,243,632 152,465,780 RGD:2290271
G MBNL2 muscleblind like splicing regulator 2 JBrowse link 13 97,222,289 97,394,120 RGD:2290271
G MBNL3 muscleblind like splicing regulator 3 JBrowse link X 132,369,314 132,490,035 RGD:2290271
G METTL3 methyltransferase like 3 JBrowse link 14 21,498,138 21,511,340 RGD:2290271
G NBDY negative regulator of P-body association JBrowse link X 56,729,242 56,819,179 RGD:2290271
G NONO non-POU domain containing octamer binding JBrowse link X 71,283,192 71,301,168 RGD:2290271
G NSRP1 nuclear speckle splicing regulatory protein 1 JBrowse link 17 30,116,807 30,186,475 RGD:2290271
G NUDT21 nudix hydrolase 21 JBrowse link 16 56,429,133 56,451,332 RGD:2290271
G PAN2 poly(A) specific ribonuclease subunit PAN2 JBrowse link 12 56,316,223 56,334,000 RGD:2290271
G PAN3 poly(A) specific ribonuclease subunit PAN3 JBrowse link 13 28,135,021 28,295,335 RGD:2290271
G PAPOLA poly(A) polymerase alpha JBrowse link 14 96,502,376 96,567,116 RGD:2290271
G PDCD11 programmed cell death 11 JBrowse link 10 103,396,615 103,446,295 RGD:2290271
G PDE12 phosphodiesterase 12 JBrowse link 3 57,556,274 57,656,495 RGD:2290271
G PHRF1 PHD and ring finger domains 1 JBrowse link 11 576,446 612,222 RGD:2290271
G PPARGC1A PPARG coactivator 1 alpha JBrowse link 4 23,792,021 24,472,905 RGD:2290271
G PPP1R8 protein phosphatase 1 regulatory subunit 8 JBrowse link 1 27,830,782 27,851,676 RGD:2290271
G PPP4R2 protein phosphatase 4 regulatory subunit 2 JBrowse link 3 72,996,743 73,069,201 RGD:2290271
G PRKACA protein kinase cAMP-activated catalytic subunit alpha JBrowse link 19 14,091,688 14,117,762 RGD:2290271
G PRKRIP1 PRKR interacting protein 1 JBrowse link 7 102,396,363 102,426,666 RGD:2290271
G PRMT9 protein arginine methyltransferase 9 JBrowse link 4 147,635,650 147,684,230 RGD:2290271
G PRPF18 pre-mRNA processing factor 18 JBrowse link 10 13,586,811 13,645,344 RGD:2290271
G PRPF3 pre-mRNA processing factor 3 JBrowse link 1 150,321,468 150,353,233 RGD:2290271
G PRPF38B pre-mRNA processing factor 38B JBrowse link 1 108,692,310 108,702,928 RGD:2290271
G PRPF8 pre-mRNA processing factor 8 JBrowse link 17 1,650,629 1,684,880 RGD:2290271
G PTBP1 polypyrimidine tract binding protein 1 JBrowse link 19 797,452 812,316 RGD:2290271
G PTBP3 polypyrimidine tract binding protein 3 JBrowse link 9 112,217,715 112,333,669 RGD:2290271
G PTCD2 pentatricopeptide repeat domain 2 JBrowse link 5 72,320,367 72,368,395 RGD:2290271
G QKI QKI, KH domain containing RNA binding JBrowse link 6 163,414,486 163,578,592 RGD:2290271
G RBBP6 RB binding protein 6, ubiquitin ligase JBrowse link 16 24,539,566 24,572,863 RGD:2290271
G RBFOX1 RNA binding fox-1 homolog 1 JBrowse link 16 5,239,752 7,713,343 RGD:2290271
G RBFOX2 RNA binding fox-1 homolog 2 JBrowse link 22 35,738,734 36,028,892 RGD:2290271
G RBFOX3 RNA binding fox-1 homolog 3 JBrowse link 17 79,089,345 79,665,600 RGD:2290271
G RBM10 RNA binding motif protein 10 JBrowse link X 47,145,196 47,186,815 RGD:2290271
G RBM11 RNA binding motif protein 11 JBrowse link 21 14,216,107 14,228,372 RGD:2290271
G RBM15B RNA binding motif protein 15B JBrowse link 3 51,391,285 51,397,908 RGD:2290271
G RBM20 RNA binding motif protein 20 JBrowse link 10 110,641,933 110,839,471 RGD:2290271
G RBM23 RNA binding motif protein 23 JBrowse link 14 22,893,204 22,919,182 RGD:2290271
G RBM24 RNA binding motif protein 24 JBrowse link 6 17,281,361 17,293,875 RGD:2290271
G RBM25 RNA binding motif protein 25 JBrowse link 14 73,058,532 73,123,899 RGD:2290271
G RBM26 RNA binding motif protein 26 JBrowse link 13 79,311,827 79,406,255 RGD:2290271
G RBM27 RNA binding motif protein 27 JBrowse link 5 146,203,550 146,289,223 RGD:2290271
G RBM28 RNA binding motif protein 28 JBrowse link 7 128,297,685 128,343,915 RGD:2290271
G RBM38 RNA binding motif protein 38 JBrowse link 20 57,391,396 57,409,333 RGD:2290271
G RBM39 RNA binding motif protein 39 JBrowse link 20 35,701,347 35,742,336 RGD:2290271
G RBM8A RNA binding motif protein 8A JBrowse link 1 145,921,556 145,927,484 RGD:2290271
G RBMXL1 RBMX like 1 JBrowse link 1 88,979,456 88,992,960 RGD:2290271
G RBMY1B RNA binding motif protein Y-linked family 1 member B JBrowse link Y 21,511,338 21,527,212 RGD:2290271
G RNASEL ribonuclease L JBrowse link 1 182,573,634 182,589,285 RGD:2290271
G RPUSD3 RNA pseudouridine synthase D3 JBrowse link 3 9,836,253 9,844,059 RGD:2290271
G RRP1B ribosomal RNA processing 1B JBrowse link 21 43,659,560 43,696,079 RGD:2290271
G SAP18 Sin3A associated protein 18 JBrowse link 13 21,140,514 21,149,097 RGD:2290271
G SCAF1 SR-related CTD associated factor 1 JBrowse link 19 49,640,481 49,658,642 RGD:2290271
G SCAF11 SR-related CTD associated factor 11 JBrowse link 12 45,919,131 45,992,040 RGD:2290271
G SCAF4 SR-related CTD associated factor 4 JBrowse link 21 31,668,987 31,732,118 RGD:2290271
G SF3A1 splicing factor 3a subunit 1 JBrowse link 22 30,331,988 30,356,894 RGD:2290271
G SF3A2 splicing factor 3a subunit 2 JBrowse link 19 2,236,824 2,248,655 RGD:2290271
G SF3A3 splicing factor 3a subunit 3 JBrowse link 1 37,956,975 37,990,022 RGD:2290271
G SF3B2 splicing factor 3b subunit 2 JBrowse link 11 66,052,361 66,069,308 RGD:2290271
G SF3B4 splicing factor 3b subunit 4 JBrowse link 1 149,923,317 149,927,803 RGD:2290271
G SFPQ splicing factor proline and glutamine rich JBrowse link 1 35,176,378 35,193,174 RGD:2290271
G SMN1 survival of motor neuron 1, telomeric JBrowse link 5 70,924,941 70,953,015 RGD:2290271
G SMN2 survival of motor neuron 2, centromeric JBrowse link 5 70,049,523 70,077,595 RGD:2290271
G SNRPD2 small nuclear ribonucleoprotein D2 polypeptide JBrowse link 19 45,687,454 45,692,316 RGD:2290271
G SON SON DNA and RNA binding protein JBrowse link 21 33,543,038 33,577,514 RGD:2290271
G SREK1 splicing regulatory glutamic acid and lysine rich protein 1 JBrowse link 5 66,144,300 66,183,616 RGD:2290271
G SREK1IP1 SREK1 interacting protein 1 JBrowse link 5 64,718,148 64,768,839 RGD:2290271
G SRRM1 serine and arginine repetitive matrix 1 JBrowse link 1 24,643,273 24,673,281 RGD:2290271
G SRRM4 serine/arginine repetitive matrix 4 JBrowse link 12 118,981,541 119,163,051 RGD:2290271
G SRRT serrate, RNA effector molecule JBrowse link 7 100,874,971 100,888,664 RGD:2290271
G SRSF1 serine and arginine rich splicing factor 1 JBrowse link 17 58,000,919 58,007,346 RGD:2290271
G SRSF11 serine and arginine rich splicing factor 11 JBrowse link 1 70,205,696 70,253,052 RGD:2290271
G SRSF2 serine and arginine rich splicing factor 2 JBrowse link 17 76,734,115 76,737,411 RGD:2290271
G SRSF4 serine and arginine rich splicing factor 4 JBrowse link 1 29,147,743 29,181,900 RGD:2290271
G SRSF5 serine and arginine rich splicing factor 5 JBrowse link 14 69,767,112 69,772,005 RGD:2290271
G SRSF7 serine and arginine rich splicing factor 7 JBrowse link 2 38,743,599 38,751,494 RGD:2290271
G SRSF9 serine and arginine rich splicing factor 9 JBrowse link 12 120,461,672 120,469,748 RGD:2290271
G SUGP2 SURP and G-patch domain containing 2 JBrowse link 19 18,990,887 19,034,038 RGD:2290271
G SUPT4H1 SPT4 homolog, DSIF elongation factor subunit JBrowse link 17 58,345,178 58,352,201 RGD:2290271
G SUPT6H SPT6 homolog, histone chaperone and transcription elongation factor JBrowse link 17 28,662,183 28,702,679 RGD:2290271
G TARDBP TAR DNA binding protein JBrowse link 1 11,012,654 11,030,528 RGD:2290271
G TENT2 terminal nucleotidyltransferase 2 JBrowse link 5 79,612,417 79,688,246 RGD:2290271
G TENT4A terminal nucleotidyltransferase 4A JBrowse link 5 6,713,432 6,757,045 RGD:2290271
G THOC2 THO complex 2 JBrowse link X 123,600,563 123,733,054 RGD:2290271
G THOC7 THO complex 7 JBrowse link 3 63,833,870 63,864,478 RGD:2290271
G THRAP3 thyroid hormone receptor associated protein 3 JBrowse link 1 36,224,429 36,305,357 RGD:2290271
G TRUB2 TruB pseudouridine synthase family member 2 JBrowse link 9 128,305,159 128,322,447 RGD:2290271
G TSEN15 tRNA splicing endonuclease subunit 15 JBrowse link 1 184,051,730 184,097,485 RGD:2290271
G TSEN2 tRNA splicing endonuclease subunit 2 JBrowse link 3 12,484,432 12,539,624 RGD:2290271
G TSEN34 tRNA splicing endonuclease subunit 34 JBrowse link 19 54,189,970 54,194,536 RGD:2290271
G TSEN54 tRNA splicing endonuclease subunit 54 JBrowse link 17 75,516,528 75,524,735 RGD:2290271
G TTF2 transcription termination factor 2 JBrowse link 1 117,060,303 117,107,453 RGD:2290271
G U2AF1 U2 small nuclear RNA auxiliary factor 1 JBrowse link 21 43,092,956 43,108,291 RGD:2290271
G U2AF1L5 U2 small nuclear RNA auxiliary factor 1 like 5 JBrowse link 21 6,484,623 6,499,969 RGD:2290271
G U2AF2 U2 small nuclear RNA auxiliary factor 2 JBrowse link 19 55,654,050 55,674,716 RGD:2290271
G USP39 ubiquitin specific peptidase 39 JBrowse link 2 85,602,843 85,649,284 RGD:2290271
G VIRMA vir like m6A methyltransferase associated JBrowse link 8 94,487,689 94,553,518 RGD:2290271
G WTAP WT1 associated protein JBrowse link 6 159,726,696 159,756,319 RGD:2290271
G XRN2 5'-3' exoribonuclease 2 JBrowse link 20 21,303,313 21,389,825 RGD:2290271
G YJU2 YJU2 splicing factor homolog JBrowse link 19 4,247,080 4,269,088 RGD:2290271
G ZC3H13 zinc finger CCCH-type containing 13 JBrowse link 13 45,954,465 46,052,794 RGD:2290271
G ZFP36L1 ZFP36 ring finger protein like 1 JBrowse link 14 68,787,655 68,796,243 RGD:2290271
G ZNF326 zinc finger protein 326 JBrowse link 1 89,995,095 90,035,533 RGD:2290271
G ZNF830 zinc finger protein 830 JBrowse link 17 34,961,540 34,963,777 RGD:2290271
G ZPR1 ZPR1 zinc finger JBrowse link 11 116,773,799 116,789,272 RGD:2290271
G ZRANB2 zinc finger RANBP2-type containing 2 JBrowse link 1 71,063,291 71,081,035 RGD:2290271
7-methylguanosine mRNA capping term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CCNH cyclin H JBrowse link 5 87,311,471 87,413,033 RGD:2290271
G CDK7 cyclin dependent kinase 7 JBrowse link 5 69,234,795 69,277,430 RGD:2290271
G CMTR1 cap methyltransferase 1 JBrowse link 6 37,433,214 37,482,844 RGD:2290271
G CMTR2 cap methyltransferase 2 JBrowse link 16 71,281,392 71,290,178 RGD:2290271
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit JBrowse link 19 45,349,837 45,370,647 RGD:2290271
G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit JBrowse link 2 127,257,290 127,294,166 RGD:2290271
G GTF2F1 general transcription factor IIF subunit 1 JBrowse link 19 6,379,569 6,393,186 RGD:2290271
G GTF2F2 general transcription factor IIF subunit 2 JBrowse link 13 45,119,830 45,284,893 RGD:2290271
G GTF2H1 general transcription factor IIH subunit 1 JBrowse link 11 18,322,269 18,367,045 RGD:2290271
G GTF2H2 general transcription factor IIH subunit 2 JBrowse link 5 71,035,124 71,109,113 RGD:2290271
G GTF2H3 general transcription factor IIH subunit 3 JBrowse link 12 123,633,739 123,662,604 RGD:2290271
G GTF2H4 general transcription factor IIH subunit 4 JBrowse link 6 30,908,207 30,914,106 RGD:2290271
G GTF2H5 general transcription factor IIH subunit 5 JBrowse link 6 158,168,316 158,199,344 RGD:2290271
G MNAT1 MNAT1 component of CDK activating kinase JBrowse link 14 60,734,735 60,969,965 RGD:2290271
G NCBP1 nuclear cap binding protein subunit 1 JBrowse link 9 97,633,423 97,673,748 RGD:2290271
G NCBP2 nuclear cap binding protein subunit 2 JBrowse link 3 196,932,729 196,942,593 RGD:2290271
G NCBP3 nuclear cap binding subunit 3 JBrowse link 17 3,802,158 3,846,246 RGD:2290271
G POLR2A RNA polymerase II subunit A JBrowse link 17 7,484,366 7,514,616 RGD:2290271
G POLR2B RNA polymerase II subunit B JBrowse link 4 56,978,640 57,031,162 RGD:2290271
G POLR2C RNA polymerase II subunit C JBrowse link 16 57,462,679 57,472,009 RGD:2290271
G POLR2D RNA polymerase II subunit D JBrowse link 2 127,843,553 127,858,155 RGD:2290271
G POLR2E RNA polymerase II subunit E JBrowse link 19 1,086,574 1,095,392 RGD:2290271
G POLR2F RNA polymerase II subunit F JBrowse link 22 37,953,663 38,041,915 RGD:2290271
G POLR2G RNA polymerase II subunit G JBrowse link 11 62,761,580 62,766,710 RGD:2290271
G POLR2H RNA polymerase II subunit H JBrowse link 3 184,361,710 184,368,595 RGD:2290271
G POLR2I RNA polymerase II subunit I JBrowse link 19 36,113,709 36,114,875 RGD:2290271
G POLR2J RNA polymerase II subunit J JBrowse link 7 102,473,094 102,478,934 RGD:2290271
G POLR2K RNA polymerase II subunit K JBrowse link 8 100,150,636 100,154,003 RGD:2290271
G POLR2L RNA polymerase II subunit L JBrowse link 11 839,721 842,529 RGD:2290271
G RAMAC RNA guanine-7 methyltransferase activating subunit JBrowse link 15 82,986,210 82,991,057 RGD:2290271
G RNGTT RNA guanylyltransferase and 5'-phosphatase JBrowse link 6 88,609,897 88,963,618 RGD:2290271
G RNMT RNA guanine-7 methyltransferase JBrowse link 18 13,726,645 13,764,556 RGD:2290271
G SUPT5H SPT5 homolog, DSIF elongation factor subunit JBrowse link 19 39,445,546 39,476,670 RGD:2290271
alternative mRNA splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CDK13 cyclin dependent kinase 13 JBrowse link 7 39,949,664 40,099,580 RGD:2290271
G CELF4 CUGBP Elav-like family member 4 JBrowse link 18 37,243,040 37,565,798 RGD:2290271
G DDX17 DEAD-box helicase 17 JBrowse link 22 38,483,438 38,506,311 RGD:2290271
G DDX5 DEAD-box helicase 5 JBrowse link 17 64,498,254 64,506,866 RGD:2290271
G DHX9 DExH-box helicase 9 JBrowse link 1 182,839,347 182,887,982 RGD:2290271
G ESRP2 epithelial splicing regulatory protein 2 JBrowse link 16 68,225,968 68,236,175 RGD:2290271
G HNRNPM heterogeneous nuclear ribonucleoprotein M JBrowse link 19 8,444,575 8,489,114 RGD:2290271
G KDM1A lysine demethylase 1A JBrowse link 1 23,019,443 23,083,691 RGD:2290271
G PQBP1 polyglutamine binding protein 1 JBrowse link X 48,897,862 48,903,145 RGD:2290271
G RBM17 RNA binding motif protein 17 JBrowse link 10 6,089,034 6,117,459 RGD:2290271
G RSRC1 arginine and serine rich coiled-coil 1 JBrowse link 3 158,110,052 158,545,730 RGD:2290271
G SCNM1 sodium channel modifier 1 JBrowse link 1 151,166,144 151,170,296 RGD:2290271
G SFPQ splicing factor proline and glutamine rich JBrowse link 1 35,176,378 35,193,174 RGD:2290271
G SFSWAP splicing factor SWAP JBrowse link 12 131,711,088 131,799,738 RGD:2290271
G SLU7 SLU7 homolog, splicing factor JBrowse link 5 160,401,641 160,419,081 RGD:2290271
G SRSF1 serine and arginine rich splicing factor 1 JBrowse link 17 58,000,919 58,007,346 RGD:2290271
G SRSF6 serine and arginine rich splicing factor 6 JBrowse link 20 43,457,893 43,464,243 RGD:2290271
cis assembly of pre-catalytic spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DDX23 DEAD-box helicase 23 JBrowse link 12 48,829,756 48,852,163 RGD:2290271
G SNRNP200 small nuclear ribonucleoprotein U5 subunit 200 JBrowse link 2 96,274,338 96,305,546 RGD:2290271
generation of catalytic spliceosome for first transesterification step term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PRPF19 pre-mRNA processing factor 19 JBrowse link 11 60,890,547 60,906,585 RGD:2290271
G XAB2 XPA binding protein 2 JBrowse link 19 7,619,525 7,629,545 RGD:2290271
generation of catalytic spliceosome for second transesterification step term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AL157392.5 novel protein RGD:2290271
G ISY1 ISY1 splicing factor homolog JBrowse link 3 129,127,415 129,161,063 RGD:2290271
G ISY1-RAB43 ISY1-RAB43 readthrough JBrowse link 3 129,087,569 129,161,230 RGD:2290271
G PRPF18 pre-mRNA processing factor 18 JBrowse link 10 13,586,811 13,645,344 RGD:2290271
mitochondrial mRNA polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PNPT1 polyribonucleotide nucleotidyltransferase 1 JBrowse link 2 55,634,061 55,693,853 RGD:2290271
mitochondrial mRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G TBRG4 transforming growth factor beta regulator 4 JBrowse link 7 45,100,100 45,111,747 RGD:2290271
modification by virus of host mRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CPSF4 cleavage and polyadenylation specific factor 4 JBrowse link 7 99,438,912 99,457,377 RGD:2290271
G PABPN1 poly(A) binding protein nuclear 1 JBrowse link 14 23,320,188 23,326,185 RGD:2290271
mRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ALYREF Aly/REF export factor JBrowse link 17 81,887,835 81,891,587 RGD:2290271
G CASC3 CASC3 exon junction complex subunit JBrowse link 17 40,140,506 40,172,172 RGD:2290271
G CDC40 cell division cycle 40 JBrowse link 6 110,180,427 110,232,232 RGD:2290271
G CHTOP chromatin target of PRMT1 JBrowse link 1 153,633,982 153,646,306 RGD:2290271
G CLP1 cleavage factor polyribonucleotide kinase subunit 1 JBrowse link 11 57,657,744 57,661,865 RGD:2290271
G CPSF1 cleavage and polyadenylation specific factor 1 JBrowse link 8 144,393,231 144,409,400 RGD:2290271
G CPSF2 cleavage and polyadenylation specific factor 2 JBrowse link 14 92,121,969 92,172,145 RGD:2290271
G CPSF3 cleavage and polyadenylation specific factor 3 JBrowse link 2 9,423,537 9,473,110 RGD:2290271
G CPSF4 cleavage and polyadenylation specific factor 4 JBrowse link 7 99,438,912 99,457,377 RGD:2290271
G CPSF7 cleavage and polyadenylation specific factor 7 JBrowse link 11 61,402,648 61,429,992 RGD:2290271
G CSTF1 cleavage stimulation factor subunit 1 JBrowse link 20 56,392,371 56,406,362 RGD:2290271
G CSTF2 cleavage stimulation factor subunit 2 JBrowse link X 100,820,359 100,843,534 RGD:2290271
G CSTF2T cleavage stimulation factor subunit 2 tau variant JBrowse link 10 51,695,486 51,699,595 RGD:2290271
G CSTF3 cleavage stimulation factor subunit 3 JBrowse link 11 33,084,584 33,161,491 RGD:2290271
G DDX39A DExD-box helicase 39A JBrowse link 19 14,408,798 14,419,383 RGD:2290271
G DDX39B DExD-box helicase 39B JBrowse link 6 31,530,226 31,542,003 RGD:2290271
G DHX38 DEAH-box helicase 38 JBrowse link 16 72,093,665 72,112,912 RGD:2290271
G EIF4A3 eukaryotic translation initiation factor 4A3 JBrowse link 17 80,134,369 80,147,128 RGD:2290271
G FIP1L1 factor interacting with PAPOLA and CPSF1 JBrowse link 4 53,377,641 53,462,583 RGD:2290271
G MAGOH mago homolog, exon junction complex subunit JBrowse link 1 53,226,900 53,238,518 RGD:2290271
G MAGOHB mago homolog B, exon junction complex subunit JBrowse link 12 10,604,190 10,613,609 RGD:2290271
G NCBP1 nuclear cap binding protein subunit 1 JBrowse link 9 97,633,423 97,673,748 RGD:2290271
G NCBP2 nuclear cap binding protein subunit 2 JBrowse link 3 196,932,729 196,942,593 RGD:2290271
G NUDT21 nudix hydrolase 21 JBrowse link 16 56,429,133 56,451,332 RGD:2290271
G PABPN1 poly(A) binding protein nuclear 1 JBrowse link 14 23,320,188 23,326,185 RGD:2290271
G PAPOLA poly(A) polymerase alpha JBrowse link 14 96,502,376 96,567,116 RGD:2290271
G PCF11 PCF11 cleavage and polyadenylation factor subunit JBrowse link 11 83,157,095 83,187,451 RGD:2290271
G POLDIP3 DNA polymerase delta interacting protein 3 JBrowse link 22 42,583,721 42,614,962 RGD:2290271
G RBM8A RNA binding motif protein 8A JBrowse link 1 145,921,556 145,927,484 RGD:2290271
G RNPS1 RNA binding protein with serine rich domain 1 JBrowse link 16 2,253,116 2,268,126 RGD:2290271
G RPRD1A regulation of nuclear pre-mRNA domain containing 1A JBrowse link 18 35,982,385 36,067,594 RGD:2290271
G RPRD1B regulation of nuclear pre-mRNA domain containing 1B JBrowse link 20 38,033,462 38,092,366 RGD:2290271
G RPRD2 regulation of nuclear pre-mRNA domain containing 2 JBrowse link 1 150,364,111 150,476,566 RGD:2290271
G SARNP SAP domain containing ribonucleoprotein JBrowse link 12 55,752,463 55,817,756 RGD:2290271
G SLU7 SLU7 homolog, splicing factor JBrowse link 5 160,401,641 160,419,081 RGD:2290271
G SRRM1 serine and arginine repetitive matrix 1 JBrowse link 1 24,643,273 24,673,281 RGD:2290271
G SRSF1 serine and arginine rich splicing factor 1 JBrowse link 17 58,000,919 58,007,346 RGD:2290271
G SRSF11 serine and arginine rich splicing factor 11 JBrowse link 1 70,205,696 70,253,052 RGD:2290271
G SRSF2 serine and arginine rich splicing factor 2 JBrowse link 17 76,734,115 76,737,411 RGD:2290271
G SRSF3 serine and arginine rich splicing factor 3 JBrowse link 6 36,594,313 36,605,600 RGD:2290271
G SRSF4 serine and arginine rich splicing factor 4 JBrowse link 1 29,147,743 29,181,900 RGD:2290271
G SRSF5 serine and arginine rich splicing factor 5 JBrowse link 14 69,767,112 69,772,005 RGD:2290271
G SRSF6 serine and arginine rich splicing factor 6 JBrowse link 20 43,457,893 43,464,243 RGD:2290271
G SRSF7 serine and arginine rich splicing factor 7 JBrowse link 2 38,743,599 38,751,494 RGD:2290271
G SRSF9 serine and arginine rich splicing factor 9 JBrowse link 12 120,461,672 120,469,748 RGD:2290271
G SYMPK symplekin JBrowse link 19 45,815,410 45,863,167 RGD:2290271
G THOC1 THO complex 1 JBrowse link 18 214,348 268,047 RGD:2290271
G THOC2 THO complex 2 JBrowse link X 123,600,563 123,733,054 RGD:2290271
G THOC3 THO complex 3 JBrowse link 5 175,959,531 176,034,905 RGD:2290271
G THOC5 THO complex 5 JBrowse link 22 29,505,879 29,553,760 RGD:2290271
G THOC6 THO complex 6 JBrowse link 16 3,024,035 3,027,750 RGD:2290271
G THOC7 THO complex 7 JBrowse link 3 63,833,870 63,864,478 RGD:2290271
G U2AF1 U2 small nuclear RNA auxiliary factor 1 JBrowse link 21 43,092,956 43,108,291 RGD:2290271
G U2AF1L4 U2 small nuclear RNA auxiliary factor 1 like 4 JBrowse link 19 35,742,464 35,745,418 RGD:2290271
G U2AF1L5 U2 small nuclear RNA auxiliary factor 1 like 5 JBrowse link 21 6,484,623 6,499,969 RGD:2290271
G U2AF2 U2 small nuclear RNA auxiliary factor 2 JBrowse link 19 55,654,050 55,674,716 RGD:2290271
G UPF3B UPF3B regulator of nonsense mediated mRNA decay JBrowse link X 119,805,311 119,853,028 RGD:2290271
G WDR33 WD repeat domain 33 JBrowse link 2 127,701,027 127,811,187 RGD:2290271
G ZC3H11A zinc finger CCCH-type containing 11A JBrowse link 1 203,795,623 203,854,126 RGD:2290271
G ZC3H3 zinc finger CCCH-type containing 3 JBrowse link 8 143,437,655 143,549,729 RGD:2290271
mRNA 3'-end processing by stem-loop binding and cleavage term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CPSF2 cleavage and polyadenylation specific factor 2 JBrowse link 14 92,121,969 92,172,145 RGD:2290271
G CPSF3 cleavage and polyadenylation specific factor 3 JBrowse link 2 9,423,537 9,473,110 RGD:2290271
G LSM11 LSM11, U7 small nuclear RNA associated JBrowse link 5 157,743,712 157,760,709 RGD:2290271
G SLBP stem-loop binding protein JBrowse link 4 1,692,731 1,715,876 RGD:2290271
G ZNF473 zinc finger protein 473 JBrowse link 19 50,026,005 50,048,776 RGD:2290271
mRNA 3'-splice site recognition term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ISY1 ISY1 splicing factor homolog JBrowse link 3 129,127,415 129,161,063 RGD:2290271
G ISY1-RAB43 ISY1-RAB43 readthrough JBrowse link 3 129,087,569 129,161,230 RGD:2290271
G SF1 splicing factor 1 JBrowse link 11 64,764,604 64,778,844 RGD:2290271
G SF3A1 splicing factor 3a subunit 1 JBrowse link 22 30,331,988 30,356,894 RGD:2290271
G SF3A2 splicing factor 3a subunit 2 JBrowse link 19 2,236,824 2,248,655 RGD:2290271
G SF3A3 splicing factor 3a subunit 3 JBrowse link 1 37,956,975 37,990,022 RGD:2290271
G SLU7 SLU7 homolog, splicing factor JBrowse link 5 160,401,641 160,419,081 RGD:2290271
mRNA 5'-splice site recognition term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G PRPF39 pre-mRNA processing factor 39 JBrowse link 14 45,084,116 45,116,282 RGD:2290271
G PSIP1 PC4 and SFRS1 interacting protein 1 JBrowse link 9 15,464,066 15,511,019 RGD:2290271
G SFSWAP splicing factor SWAP JBrowse link 12 131,711,088 131,799,738 RGD:2290271
G SNRPC small nuclear ribonucleoprotein polypeptide C JBrowse link 6 34,757,094 34,773,857 RGD:2290271
G SRSF1 serine and arginine rich splicing factor 1 JBrowse link 17 58,000,919 58,007,346 RGD:2290271
G SRSF12 serine and arginine rich splicing factor 12 JBrowse link 6 89,095,957 89,118,071 RGD:2290271
mRNA alternative polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CPSF6 cleavage and polyadenylation specific factor 6 JBrowse link 12 69,239,568 69,274,358 RGD:2290271
G CPSF7 cleavage and polyadenylation specific factor 7 JBrowse link 11 61,402,648 61,429,992 RGD:2290271
G NUDT21 nudix hydrolase 21 JBrowse link 16 56,429,133 56,451,332 RGD:2290271
G VIRMA vir like m6A methyltransferase associated JBrowse link 8 94,487,689 94,553,518 RGD:2290271
G YTHDC1 YTH domain containing 1 JBrowse link 4 68,310,387 68,350,093 RGD:2290271
mRNA cis splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CWC15 CWC15 spliceosome associated protein homolog JBrowse link 11 94,962,620 94,973,612 RGD:2290271
G DCPS decapping enzyme, scavenger JBrowse link 11 126,304,060 126,350,005 RGD:2290271
G NCBP1 nuclear cap binding protein subunit 1 JBrowse link 9 97,633,423 97,673,748 RGD:2290271
G NCBP2 nuclear cap binding protein subunit 2 JBrowse link 3 196,932,729 196,942,593 RGD:2290271
G NCBP2L nuclear cap binding protein subunit 2 like JBrowse link X 107,777,733 107,795,829 RGD:2290271
G PRPF40A pre-mRNA processing factor 40 homolog A JBrowse link 2 152,651,593 152,718,019 RGD:2290271
G PRPF40B pre-mRNA processing factor 40 homolog B JBrowse link 12 49,622,717 49,645,129 RGD:2290271
G RBM19 RNA binding motif protein 19 JBrowse link 12 113,816,740 113,966,371 RGD:2290271
G RBM22 RNA binding motif protein 22 JBrowse link 5 150,690,792 150,701,089 RGD:2290271
G RBM4 RNA binding motif protein 4 JBrowse link 11 66,638,617 66,668,380 RGD:2290271
G RBM4B RNA binding motif protein 4B JBrowse link 11 66,664,998 66,677,887 RGD:2290271
G RBMY1A1 RNA binding motif protein Y-linked family 1 member A1 JBrowse link Y 21,534,879 21,559,683 RGD:2290271
G RBMY1D RNA binding motif protein Y-linked family 1 member D JBrowse link Y 21,869,718 21,900,746 RGD:2290271
G RBMY1F RNA binding motif protein Y-linked family 1 member F JBrowse link Y 22,167,099 22,183,008 RGD:2290271
G RBMY1J RNA binding motif protein Y-linked family 1 member J JBrowse link Y 22,403,410 22,419,317 RGD:2290271
G SART1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP JBrowse link 11 65,961,727 65,980,137 RGD:2290271
G SRSF1 serine and arginine rich splicing factor 1 JBrowse link 17 58,000,919 58,007,346 RGD:2290271
G SRSF10 serine and arginine rich splicing factor 10 JBrowse link 1 23,964,347 23,980,370 RGD:2290271
G SRSF12 serine and arginine rich splicing factor 12 JBrowse link 6 89,095,957 89,118,071 RGD:2290271
G SRSF2 serine and arginine rich splicing factor 2 JBrowse link 17 76,734,115 76,737,411 RGD:2290271
G SRSF3 serine and arginine rich splicing factor 3 JBrowse link 6 36,594,313 36,605,600 RGD:2290271
G SRSF4 serine and arginine rich splicing factor 4 JBrowse link 1 29,147,743 29,181,900 RGD:2290271
G SRSF5 serine and arginine rich splicing factor 5 JBrowse link 14 69,767,112 69,772,005 RGD:2290271
G SRSF6 serine and arginine rich splicing factor 6 JBrowse link 20 43,457,893 43,464,243 RGD:2290271
G SRSF7 serine and arginine rich splicing factor 7 JBrowse link 2 38,743,599 38,751,494 RGD:2290271
G SRSF8 serine and arginine rich splicing factor 8 JBrowse link 11 95,066,877 95,071,227 RGD:2290271
G SRSF9 serine and arginine rich splicing factor 9 JBrowse link 12 120,461,672 120,469,748 RGD:2290271
G WBP11 WW domain binding protein 11 JBrowse link 12 14,784,582 14,803,478 RGD:2290271
G WBP4 WW domain binding protein 4 JBrowse link 13 41,061,509 41,084,006 RGD:2290271
mRNA cleavage involved in mRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ERN1 endoplasmic reticulum to nucleus signaling 1 JBrowse link 17 64,039,142 64,132,469 RGD:2290271
mRNA polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AHCYL1 adenosylhomocysteinase like 1 JBrowse link 1 109,984,765 110,023,742 RGD:2290271
G APP amyloid beta precursor protein JBrowse link 21 25,880,550 26,171,128 RGD:2290271
G CDC73 cell division cycle 73 JBrowse link 1 193,122,031 193,254,815 RGD:2290271
G CLP1 cleavage factor polyribonucleotide kinase subunit 1 JBrowse link 11 57,657,744 57,661,865 RGD:2290271
G CPSF1 cleavage and polyadenylation specific factor 1 JBrowse link 8 144,393,231 144,409,400 RGD:2290271
G CPSF2 cleavage and polyadenylation specific factor 2 JBrowse link 14 92,121,969 92,172,145 RGD:2290271
G CPSF3 cleavage and polyadenylation specific factor 3 JBrowse link 2 9,423,537 9,473,110 RGD:2290271
G CSTF2 cleavage stimulation factor subunit 2 JBrowse link X 100,820,359 100,843,534 RGD:2290271
G CSTF3 cleavage stimulation factor subunit 3 JBrowse link 11 33,084,584 33,161,491 RGD:2290271
G FIP1L1 factor interacting with PAPOLA and CPSF1 JBrowse link 4 53,377,641 53,462,583 RGD:2290271
G GRSF1 G-rich RNA sequence binding factor 1 JBrowse link 4 70,815,783 70,843,274 RGD:2290271
G LEO1 LEO1 homolog, Paf1/RNA polymerase II complex component JBrowse link 15 51,938,024 51,971,801 RGD:2290271
G MTPAP mitochondrial poly(A) polymerase JBrowse link 10 30,309,801 30,349,338 RGD:2290271
G NUDT21 nudix hydrolase 21 JBrowse link 16 56,429,133 56,451,332 RGD:2290271
G PABPC1 poly(A) binding protein cytoplasmic 1 JBrowse link 8 100,702,916 100,722,088 RGD:2290271
G PABPC1L poly(A) binding protein cytoplasmic 1 like JBrowse link 20 44,910,060 44,939,316 RGD:2290271
G PAF1 PAF1 homolog, Paf1/RNA polymerase II complex component JBrowse link 19 39,385,629 39,391,106 RGD:2290271
G PAPOLA poly(A) polymerase alpha JBrowse link 14 96,502,376 96,567,116 RGD:2290271
G PAPOLB poly(A) polymerase beta JBrowse link 7 4,857,738 4,862,030 RGD:2290271
G PAPOLG poly(A) polymerase gamma JBrowse link 2 60,756,248 60,802,086 RGD:2290271
G PCF11 PCF11 cleavage and polyadenylation factor subunit JBrowse link 11 83,157,095 83,187,451 RGD:2290271
G SCAF8 SR-related CTD associated factor 8 JBrowse link 6 154,733,378 154,834,244 RGD:2290271
G SSU72 SSU72 homolog, RNA polymerase II CTD phosphatase JBrowse link 1 1,541,673 1,574,863 RGD:2290271
G SSU72P2 SSU72 pseudogene 2 JBrowse link 11 4,242,056 4,242,650 RGD:2290271
G SSU72P3 SSU72 pseudogene 3 JBrowse link 11 4,329,864 4,330,449 RGD:2290271
G SSU72P4 SSU72 pseudogene 4 JBrowse link 11 4,287,499 4,288,093 RGD:2290271
G SSU72P5 SSU72 pseudogene 5 JBrowse link 11 4,233,278 4,233,872 RGD:2290271
G SSU72P7 SSU72 pseudogene 7 JBrowse link 11 4,338,660 4,339,244 RGD:2290271
G SSU72P8 SSU72 pseudogene 8 JBrowse link 7 124,476,371 124,476,955 RGD:2290271
G SYMPK symplekin JBrowse link 19 45,815,410 45,863,167 RGD:2290271
G TENT4B terminal nucleotidyltransferase 4B JBrowse link 16 50,152,911 50,235,310 RGD:2290271
G TUT1 terminal uridylyl transferase 1, U6 snRNA-specific JBrowse link 11 62,575,052 62,591,523 RGD:2290271
G WDR33 WD repeat domain 33 JBrowse link 2 127,701,027 127,811,187 RGD:2290271
mRNA splice site selection term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CELF1 CUGBP Elav-like family member 1 JBrowse link 11 47,465,937 47,565,539 RGD:2290271
G CELF2 CUGBP Elav-like family member 2 JBrowse link 10 10,462,515 11,336,675 RGD:2290271
G CELF3 CUGBP Elav-like family member 3 JBrowse link 1 151,696,652 151,716,821 RGD:2290271
G CELF4 CUGBP Elav-like family member 4 JBrowse link 18 37,243,040 37,565,798 RGD:2290271
G CELF5 CUGBP Elav-like family member 5 JBrowse link 19 3,224,661 3,297,076 RGD:2290271
G CELF6 CUGBP Elav-like family member 6 JBrowse link 15 72,284,727 72,320,157 RGD:2290271
G FMC1-LUC7L2 FMC1-LUC7L2 readthrough JBrowse link 7 139,341,132 139,423,457 RGD:2290271
G KHDC4 KH domain containing 4, pre-mRNA splicing factor JBrowse link 1 155,913,045 155,934,413 RGD:2290271
G LUC7L LUC7 like JBrowse link 16 188,969 229,482 RGD:2290271
G LUC7L2 LUC7 like 2, pre-mRNA splicing factor JBrowse link 7 139,340,359 139,423,457 RGD:2290271
G LUC7L3 LUC7 like 3 pre-mRNA splicing factor JBrowse link 17 50,719,565 50,756,219 RGD:2290271
G NOL3 nucleolar protein 3 JBrowse link 16 67,170,497 67,175,737 RGD:2290271
G PTBP2 polypyrimidine tract binding protein 2 JBrowse link 1 96,721,605 96,823,739 RGD:2290271
G RBMX RNA binding motif protein X-linked JBrowse link X 136,869,192 136,880,780 RGD:2290271
G SETX senataxin JBrowse link 9 132,261,356 132,356,726 RGD:2290271
G SRSF1 serine and arginine rich splicing factor 1 JBrowse link 17 58,000,919 58,007,346 RGD:2290271
G SRSF10 serine and arginine rich splicing factor 10 JBrowse link 1 23,964,347 23,980,370 RGD:2290271
G SRSF5 serine and arginine rich splicing factor 5 JBrowse link 14 69,767,112 69,772,005 RGD:2290271
G SRSF6 serine and arginine rich splicing factor 6 JBrowse link 20 43,457,893 43,464,243 RGD:2290271
G SRSF9 serine and arginine rich splicing factor 9 JBrowse link 12 120,461,672 120,469,748 RGD:2290271
G YTHDC1 YTH domain containing 1 JBrowse link 4 68,310,387 68,350,093 RGD:2290271
mRNA splicing, via endonucleolytic cleavage and ligation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ERN1 endoplasmic reticulum to nucleus signaling 1 JBrowse link 17 64,039,142 64,132,469 RGD:2290271
mRNA splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AC011511.4 novel transcript RGD:2290271
G AD000671.2 novel transcript RGD:2290271
G ALYREF Aly/REF export factor JBrowse link 17 81,887,835 81,891,587 RGD:2290271
G AQR aquarius intron-binding spliceosomal factor JBrowse link 15 34,851,782 34,969,742 RGD:2290271
G BCAS2 BCAS2 pre-mRNA processing factor JBrowse link 1 114,567,557 114,581,615 RGD:2290271
G BUD13 BUD13 homolog JBrowse link 11 116,748,170 116,772,998 RGD:2290271
G BUD31 BUD31 homolog JBrowse link 7 99,408,641 99,419,616 RGD:2290271
G CACTIN cactin, spliceosome C complex subunit JBrowse link 19 3,610,645 3,626,815 RGD:2290271
G CASC3 CASC3 exon junction complex subunit JBrowse link 17 40,140,506 40,172,172 RGD:2290271
G CCAR1 cell division cycle and apoptosis regulator 1 JBrowse link 10 68,721,239 68,792,377 RGD:2290271
G CD2BP2 CD2 cytoplasmic tail binding protein 2 JBrowse link 16 30,350,766 30,355,308 RGD:2290271
G CDC40 cell division cycle 40 JBrowse link 6 110,180,427 110,232,232 RGD:2290271
G CDC5L cell division cycle 5 like JBrowse link 6 44,387,706 44,450,425 RGD:2290271
G CHERP calcium homeostasis endoplasmic reticulum protein JBrowse link 19 16,517,894 16,542,437 RGD:2290271
G CLP1 cleavage factor polyribonucleotide kinase subunit 1 JBrowse link 11 57,657,744 57,661,865 RGD:2290271
G CPSF1 cleavage and polyadenylation specific factor 1 JBrowse link 8 144,393,231 144,409,400 RGD:2290271
G CPSF2 cleavage and polyadenylation specific factor 2 JBrowse link 14 92,121,969 92,172,145 RGD:2290271
G CPSF3 cleavage and polyadenylation specific factor 3 JBrowse link 2 9,423,537 9,473,110 RGD:2290271
G CPSF4 cleavage and polyadenylation specific factor 4 JBrowse link 7 99,438,912 99,457,377 RGD:2290271
G CPSF7 cleavage and polyadenylation specific factor 7 JBrowse link 11 61,402,648 61,429,992 RGD:2290271
G CRNKL1 crooked neck pre-mRNA splicing factor 1 JBrowse link 20 20,034,361 20,056,046 RGD:2290271
G CSTF1 cleavage stimulation factor subunit 1 JBrowse link 20 56,392,371 56,406,362 RGD:2290271
G CSTF2 cleavage stimulation factor subunit 2 JBrowse link X 100,820,359 100,843,534 RGD:2290271
G CSTF2T cleavage stimulation factor subunit 2 tau variant JBrowse link 10 51,695,486 51,699,595 RGD:2290271
G CSTF3 cleavage stimulation factor subunit 3 JBrowse link 11 33,084,584 33,161,491 RGD:2290271
G CTNNBL1 catenin beta like 1 JBrowse link 20 37,693,955 37,872,129 RGD:2290271
G CWC15 CWC15 spliceosome associated protein homolog JBrowse link 11 94,962,620 94,973,612 RGD:2290271
G CWC22 CWC22 spliceosome associated protein homolog JBrowse link 2 179,944,876 180,007,297 RGD:2290271
G CWC25 CWC25 spliceosome associated protein homolog JBrowse link 17 38,800,434 38,825,350 RGD:2290271
G CWC27 CWC27 spliceosome associated cyclophilin JBrowse link 5 64,768,918 65,018,763 RGD:2290271
G CWF19L1 CWF19 like cell cycle control factor 1 JBrowse link 10 100,232,298 100,267,638 RGD:2290271
G CWF19L2 CWF19 like cell cycle control factor 2 JBrowse link 11 107,326,345 107,457,846 RGD:2290271
G DBR1 debranching RNA lariats 1 JBrowse link 3 138,160,988 138,174,921 RGD:2290271
G DDX23 DEAD-box helicase 23 JBrowse link 12 48,829,756 48,852,163 RGD:2290271
G DDX39A DExD-box helicase 39A JBrowse link 19 14,408,798 14,419,383 RGD:2290271
G DDX39B DExD-box helicase 39B JBrowse link 6 31,530,226 31,542,003 RGD:2290271
G DDX41 DEAD-box helicase 41 JBrowse link 5 177,511,577 177,516,961 RGD:2290271
G DDX42 DEAD-box helicase 42 JBrowse link 17 63,773,856 63,819,317 RGD:2290271
G DDX46 DEAD-box helicase 46 JBrowse link 5 134,758,778 134,831,121 RGD:2290271
G DDX5 DEAD-box helicase 5 JBrowse link 17 64,498,254 64,506,866 RGD:2290271
G DHX15 DEAH-box helicase 15 JBrowse link 4 24,527,475 24,584,554 RGD:2290271
G DHX16 DEAH-box helicase 16 JBrowse link 6 30,653,119 30,673,053 RGD:2290271
G DHX35 DEAH-box helicase 35 JBrowse link 20 38,962,344 39,039,723 RGD:2290271
G DHX38 DEAH-box helicase 38 JBrowse link 16 72,093,665 72,112,912 RGD:2290271
G DHX40 DEAH-box helicase 40 JBrowse link 17 59,565,563 59,608,345 RGD:2290271
G DHX8 DEAH-box helicase 8 JBrowse link 17 43,483,865 43,544,799 RGD:2290271
G DHX9 DExH-box helicase 9 JBrowse link 1 182,839,347 182,887,982 RGD:2290271
G DNAJC8 DnaJ heat shock protein family (Hsp40) member C8 JBrowse link 1 28,200,278 28,233,029 RGD:2290271
G EFTUD2 elongation factor Tu GTP binding domain containing 2 JBrowse link 17 44,849,948 44,899,625 RGD:2290271
G EIF4A3 eukaryotic translation initiation factor 4A3 JBrowse link 17 80,134,369 80,147,128 RGD:2290271
G ELAVL1 ELAV like RNA binding protein 1 JBrowse link 19 7,958,573 8,005,641 RGD:2290271
G ELAVL2 ELAV like RNA binding protein 2 JBrowse link 9 23,690,099 23,850,708 RGD:2290271
G ESS2 ess-2 splicing factor homolog JBrowse link 22 19,130,279 19,144,726 RGD:2290271
G FIP1L1 factor interacting with PAPOLA and CPSF1 JBrowse link 4 53,377,641 53,462,583 RGD:2290271
G FRG1 FSHD region gene 1 JBrowse link 4 189,940,846 189,963,204 RGD:2290271
G FUS FUS RNA binding protein JBrowse link 16 31,180,110 31,194,871 RGD:2290271
G GCFC2 GC-rich sequence DNA-binding factor 2 JBrowse link 2 75,655,606 75,711,642 RGD:2290271
G GEMIN5 gem nuclear organelle associated protein 5 JBrowse link 5 154,887,411 154,938,216 RGD:2290271
G GEMIN6 gem nuclear organelle associated protein 6 JBrowse link 2 38,778,210 38,785,002 RGD:2290271
G GEMIN7 gem nuclear organelle associated protein 7 JBrowse link 19 45,075,627 45,091,518 RGD:2290271
G GPATCH1 G-patch domain containing 1 JBrowse link 19 33,080,880 33,130,542 RGD:2290271
G GPKOW G-patch domain and KOW motifs JBrowse link X 49,113,396 49,124,547 RGD:2290271
G GTF2F1 general transcription factor IIF subunit 1 JBrowse link 19 6,379,569 6,393,186 RGD:2290271
G GTF2F2 general transcription factor IIF subunit 2 JBrowse link 13 45,119,830 45,284,893 RGD:2290271
G HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 JBrowse link 5 137,745,651 137,754,363 RGD:2290271
G HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 JBrowse link 12 54,280,726 54,287,087 RGD:2290271
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 JBrowse link 7 26,189,920 26,200,775 RGD:2290271
G HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 JBrowse link 2 177,212,694 177,223,959 RGD:2290271
G HNRNPC heterogeneous nuclear ribonucleoprotein C JBrowse link 14 21,209,136 21,269,479 RGD:2290271
G HNRNPD heterogeneous nuclear ribonucleoprotein D JBrowse link 4 82,352,498 82,373,996 RGD:2290271
G HNRNPF heterogeneous nuclear ribonucleoprotein F JBrowse link 10 43,385,617 43,409,248 RGD:2290271
G HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 JBrowse link 5 179,614,178 179,634,784 RGD:2290271
G HNRNPH2 heterogeneous nuclear ribonucleoprotein H2 JBrowse link X 101,408,133 101,414,140 RGD:2290271
G HNRNPH3 heterogeneous nuclear ribonucleoprotein H3 JBrowse link 10 68,331,693 68,343,196 RGD:2290271
G HNRNPK heterogeneous nuclear ribonucleoprotein K JBrowse link 9 83,968,083 83,980,782 RGD:2290271
G HNRNPL heterogeneous nuclear ribonucleoprotein L JBrowse link 19 38,836,370 38,852,347 RGD:2290271
G HNRNPM heterogeneous nuclear ribonucleoprotein M JBrowse link 19 8,444,575 8,489,114 RGD:2290271
G HNRNPR heterogeneous nuclear ribonucleoprotein R JBrowse link 1 23,304,688 23,344,316 RGD:2290271
G HNRNPU heterogeneous nuclear ribonucleoprotein U JBrowse link 1 244,850,297 244,864,543 RGD:2290271
G HNRNPUL1 heterogeneous nuclear ribonucleoprotein U like 1 JBrowse link 19 41,262,519 41,307,787 RGD:2290271
G HSPA8 heat shock protein family A (Hsp70) member 8 JBrowse link 11 123,057,489 123,062,366 RGD:2290271
G HTATSF1 HIV-1 Tat specific factor 1 JBrowse link X 136,497,079 136,512,346 RGD:2290271
G IK IK cytokine JBrowse link 5 140,647,818 140,662,480 RGD:2290271
G ISY1 ISY1 splicing factor homolog JBrowse link 3 129,127,415 129,161,063 RGD:2290271
G ISY1-RAB43 ISY1-RAB43 readthrough JBrowse link 3 129,087,569 129,161,230 RGD:2290271
G LSM2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 6 31,797,396 31,806,966 RGD:2290271
G LSM3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 3 14,178,817 14,201,122 RGD:2290271
G LSM4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 19 18,306,236 18,323,076 RGD:2290271
G LSM5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 7 32,485,338 32,495,283 RGD:2290271
G LSM6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 4 146,175,703 146,204,436 RGD:2290271
G LSM7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 19 2,321,521 2,328,630 RGD:2290271
G LSM8 LSM8 homolog, U6 small nuclear RNA associated JBrowse link 7 118,184,164 118,204,035 RGD:2290271
G MAGOH mago homolog, exon junction complex subunit JBrowse link 1 53,226,900 53,238,518 RGD:2290271
G MAGOHB mago homolog B, exon junction complex subunit JBrowse link 12 10,604,190 10,613,609 RGD:2290271
G METTL14 methyltransferase like 14 JBrowse link 4 118,685,375 118,715,430 RGD:2290271
G METTL3 methyltransferase like 3 JBrowse link 14 21,498,138 21,511,340 RGD:2290271
G MFAP1 microfibril associated protein 1 JBrowse link 15 43,804,492 43,824,690 RGD:2290271
G MTREX Mtr4 exosome RNA helicase JBrowse link 5 55,307,989 55,425,579 RGD:2290271
G NCBP1 nuclear cap binding protein subunit 1 JBrowse link 9 97,633,423 97,673,748 RGD:2290271
G NCBP2 nuclear cap binding protein subunit 2 JBrowse link 3 196,932,729 196,942,593 RGD:2290271
G NCBP2L nuclear cap binding protein subunit 2 like JBrowse link X 107,777,733 107,795,829 RGD:2290271
G NONO non-POU domain containing octamer binding JBrowse link X 71,283,192 71,301,168 RGD:2290271
G NOVA1 NOVA alternative splicing regulator 1 JBrowse link 14 26,443,090 26,598,033 RGD:2290271
G NOVA2 NOVA alternative splicing regulator 2 JBrowse link 19 45,933,734 45,973,865 RGD:2290271
G NUDT21 nudix hydrolase 21 JBrowse link 16 56,429,133 56,451,332 RGD:2290271
G PABPC1 poly(A) binding protein cytoplasmic 1 JBrowse link 8 100,702,916 100,722,088 RGD:2290271
G PABPN1 poly(A) binding protein nuclear 1 JBrowse link 14 23,320,188 23,326,185 RGD:2290271
G PAPOLA poly(A) polymerase alpha JBrowse link 14 96,502,376 96,567,116 RGD:2290271
G PCBP1 poly(rC) binding protein 1 JBrowse link 2 70,087,477 70,089,203 RGD:2290271
G PCBP2 poly(rC) binding protein 2 JBrowse link 12 53,452,102 53,481,162 RGD:2290271
G PCF11 PCF11 cleavage and polyadenylation factor subunit JBrowse link 11 83,157,095 83,187,451 RGD:2290271
G PDCD7 programmed cell death 7 JBrowse link 15 65,117,379 65,133,808 RGD:2290271
G PHF5A PHD finger protein 5A JBrowse link 22 41,459,717 41,468,692 RGD:2290271
G PLRG1 pleiotropic regulator 1 JBrowse link 4 154,534,997 154,550,433 RGD:2290271
G PNN pinin, desmosome associated protein JBrowse link 14 39,175,254 39,183,220 RGD:2290271
G POLR2A RNA polymerase II subunit A JBrowse link 17 7,484,366 7,514,616 RGD:2290271
G POLR2B RNA polymerase II subunit B JBrowse link 4 56,978,640 57,031,162 RGD:2290271
G POLR2C RNA polymerase II subunit C JBrowse link 16 57,462,679 57,472,009 RGD:2290271
G POLR2D RNA polymerase II subunit D JBrowse link 2 127,843,553 127,858,155 RGD:2290271
G POLR2E RNA polymerase II subunit E JBrowse link 19 1,086,574 1,095,392 RGD:2290271
G POLR2F RNA polymerase II subunit F JBrowse link 22 37,953,663 38,041,915 RGD:2290271
G POLR2G RNA polymerase II subunit G JBrowse link 11 62,761,580 62,766,710 RGD:2290271
G POLR2H RNA polymerase II subunit H JBrowse link 3 184,361,710 184,368,595 RGD:2290271
G POLR2I RNA polymerase II subunit I JBrowse link 19 36,113,709 36,114,875 RGD:2290271
G POLR2J RNA polymerase II subunit J JBrowse link 7 102,473,094 102,478,934 RGD:2290271
G POLR2K RNA polymerase II subunit K JBrowse link 8 100,150,636 100,154,003 RGD:2290271
G POLR2L RNA polymerase II subunit L JBrowse link 11 839,721 842,529 RGD:2290271
G PPIE peptidylprolyl isomerase E JBrowse link 1 39,738,845 39,765,698 RGD:2290271
G PPIH peptidylprolyl isomerase H JBrowse link 1 42,657,770 42,681,654 RGD:2290271
G PPIL1 peptidylprolyl isomerase like 1 JBrowse link 6 36,854,829 36,874,803 RGD:2290271
G PPIL3 peptidylprolyl isomerase like 3 JBrowse link 2 200,870,907 200,889,333 RGD:2290271
G PPWD1 peptidylprolyl isomerase domain and WD repeat containing 1 JBrowse link 5 65,563,239 65,587,549 RGD:2290271
G PQBP1 polyglutamine binding protein 1 JBrowse link X 48,897,862 48,903,145 RGD:2290271
G PRCC proline rich mitotic checkpoint control factor JBrowse link 1 156,767,535 156,800,819 RGD:2290271
G PRPF19 pre-mRNA processing factor 19 JBrowse link 11 60,890,547 60,906,585 RGD:2290271
G PRPF3 pre-mRNA processing factor 3 JBrowse link 1 150,321,468 150,353,233 RGD:2290271
G PRPF31 pre-mRNA processing factor 31 JBrowse link 19 54,115,706 54,131,719 RGD:2290271
G PRPF38A pre-mRNA processing factor 38A JBrowse link 1 52,404,564 52,420,836 RGD:2290271
G PRPF4 pre-mRNA processing factor 4 JBrowse link 9 113,275,634 113,292,905 RGD:2290271
G PRPF40A pre-mRNA processing factor 40 homolog A JBrowse link 2 152,651,593 152,718,019 RGD:2290271
G PRPF40B pre-mRNA processing factor 40 homolog B JBrowse link 12 49,622,717 49,645,129 RGD:2290271
G PRPF4B pre-mRNA processing factor 4B JBrowse link 6 4,021,300 4,064,983 RGD:2290271
G PRPF6 pre-mRNA processing factor 6 JBrowse link 20 63,981,132 64,033,100 RGD:2290271
G PRPF8 pre-mRNA processing factor 8 JBrowse link 17 1,650,629 1,684,880 RGD:2290271
G PSPC1 paraspeckle component 1 JBrowse link 13 19,674,752 19,783,036 RGD:2290271
G PTBP1 polypyrimidine tract binding protein 1 JBrowse link 19 797,452 812,316 RGD:2290271
G PUF60 poly(U) binding splicing factor 60 JBrowse link 8 143,816,344 143,830,041 RGD:2290271
G RALY RALY heterogeneous nuclear ribonucleoprotein JBrowse link 20 33,993,659 34,084,884 RGD:2290271
G RAVER1 ribonucleoprotein, PTB binding 1 JBrowse link 19 10,316,212 10,333,529 RGD:2290271
G RAVER2 ribonucleoprotein, PTB binding 2 JBrowse link 1 64,744,973 64,833,411 RGD:2290271
G RBM17 RNA binding motif protein 17 JBrowse link 10 6,089,034 6,117,459 RGD:2290271
G RBM22 RNA binding motif protein 22 JBrowse link 5 150,690,792 150,701,089 RGD:2290271
G RBM5 RNA binding motif protein 5 JBrowse link 3 50,088,919 50,119,021 RGD:2290271
G RBM8A RNA binding motif protein 8A JBrowse link 1 145,921,556 145,927,484 RGD:2290271
G RBMX RNA binding motif protein X-linked JBrowse link X 136,869,192 136,880,780 RGD:2290271
G RBMX2 RNA binding motif protein X-linked 2 JBrowse link X 130,401,987 130,413,656 RGD:2290271
G RBMXL2 RBMX like 2 JBrowse link 11 7,088,998 7,091,148 RGD:2290271
G RBMXL3 RBMX like 3 JBrowse link X 115,189,410 115,192,868 RGD:2290271
G RBMY1C RNA binding motif protein Y-linked family 1 member C RGD:2290271
G RBMY1D RNA binding motif protein Y-linked family 1 member D JBrowse link Y 21,869,718 21,900,746 RGD:2290271
G RBMY1E RNA binding motif protein Y-linked family 1 member E JBrowse link Y 21,902,177 21,918,044 RGD:2290271
G RNF113A ring finger protein 113A JBrowse link X 119,870,475 119,871,733 RGD:2290271
G RNPC3 RNA binding region (RNP1, RRM) containing 3 JBrowse link 1 103,525,699 103,555,239 RGD:2290271
G RNPS1 RNA binding protein with serine rich domain 1 JBrowse link 16 2,253,116 2,268,126 RGD:2290271
G RSRC1 arginine and serine rich coiled-coil 1 JBrowse link 3 158,110,052 158,545,730 RGD:2290271
G SART1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP JBrowse link 11 65,961,727 65,980,137 RGD:2290271
G SART3 spliceosome associated factor 3, U4/U6 recycling protein JBrowse link 12 108,522,214 108,561,173 RGD:2290271
G SF1 splicing factor 1 JBrowse link 11 64,764,604 64,778,844 RGD:2290271
G SF3A1 splicing factor 3a subunit 1 JBrowse link 22 30,331,988 30,356,894 RGD:2290271
G SF3A2 splicing factor 3a subunit 2 JBrowse link 19 2,236,824 2,248,655 RGD:2290271
G SF3A3 splicing factor 3a subunit 3 JBrowse link 1 37,956,975 37,990,022 RGD:2290271
G SF3B1 splicing factor 3b subunit 1 JBrowse link 2 197,389,784 197,435,093 RGD:2290271
G SF3B2 splicing factor 3b subunit 2 JBrowse link 11 66,052,361 66,069,308 RGD:2290271
G SF3B3 splicing factor 3b subunit 3 JBrowse link 16 70,523,816 70,577,668 RGD:2290271
G SF3B4 splicing factor 3b subunit 4 JBrowse link 1 149,923,317 149,927,803 RGD:2290271
G SF3B5 splicing factor 3b subunit 5 JBrowse link 6 144,094,884 144,095,573 RGD:2290271
G SF3B6 splicing factor 3b subunit 6 JBrowse link 2 24,067,586 24,076,326 RGD:2290271
G SFPQ splicing factor proline and glutamine rich JBrowse link 1 35,176,378 35,193,174 RGD:2290271
G SLU7 SLU7 homolog, splicing factor JBrowse link 5 160,401,641 160,419,081 RGD:2290271
G SMNDC1 survival motor neuron domain containing 1 JBrowse link 10 110,290,730 110,304,969 RGD:2290271
G SMU1 SMU1 DNA replication regulator and spliceosomal factor JBrowse link 9 33,041,765 33,076,705 RGD:2290271
G SNIP1 Smad nuclear interacting protein 1 JBrowse link 1 37,534,449 37,554,293 RGD:2290271
G SNRNP200 small nuclear ribonucleoprotein U5 subunit 200 JBrowse link 2 96,274,338 96,305,546 RGD:2290271
G SNRNP25 small nuclear ribonucleoprotein U11/U12 subunit 25 JBrowse link 16 53,828 57,669 RGD:2290271
G SNRNP27 small nuclear ribonucleoprotein U4/U6.U5 subunit 27 JBrowse link 2 69,893,956 69,905,236 RGD:2290271
G SNRNP35 small nuclear ribonucleoprotein U11/U12 subunit 35 JBrowse link 12 123,458,101 123,473,154 RGD:2290271
G SNRNP40 small nuclear ribonucleoprotein U5 subunit 40 JBrowse link 1 31,259,568 31,296,788 RGD:2290271
G SNRNP48 small nuclear ribonucleoprotein U11/U12 subunit 48 JBrowse link 6 7,590,198 7,611,967 RGD:2290271
G SNRNP70 small nuclear ribonucleoprotein U1 subunit 70 JBrowse link 19 49,085,451 49,108,606 RGD:2290271
G SNRPA small nuclear ribonucleoprotein polypeptide A JBrowse link 19 40,751,203 40,765,389 RGD:2290271
G SNRPA1 small nuclear ribonucleoprotein polypeptide A' JBrowse link 15 101,281,510 101,295,248 RGD:2290271
G SNRPB small nuclear ribonucleoprotein polypeptides B and B1 JBrowse link 20 2,461,642 2,470,789 RGD:2290271
G SNRPB2 small nuclear ribonucleoprotein polypeptide B2 JBrowse link 20 16,730,026 16,742,564 RGD:2290271
G SNRPC small nuclear ribonucleoprotein polypeptide C JBrowse link 6 34,757,094 34,773,857 RGD:2290271
G SNRPD1 small nuclear ribonucleoprotein D1 polypeptide JBrowse link 18 21,612,314 21,633,520 RGD:2290271
G SNRPD2 small nuclear ribonucleoprotein D2 polypeptide JBrowse link 19 45,687,454 45,692,316 RGD:2290271
G SNRPD3 small nuclear ribonucleoprotein D3 polypeptide JBrowse link 22 24,555,650 24,574,971 RGD:2290271
G SNRPE small nuclear ribonucleoprotein polypeptide E JBrowse link 1 203,861,599 203,871,152 RGD:2290271
G SNRPF small nuclear ribonucleoprotein polypeptide F JBrowse link 12 95,858,952 95,867,053 RGD:2290271
G SNRPG small nuclear ribonucleoprotein polypeptide G JBrowse link 2 70,281,362 70,293,771 RGD:2290271
G SNRPGP15 small nuclear ribonucleoprotein polypeptide G pseudogene 15 JBrowse link 19 14,489,297 14,489,890 RGD:2290271
G SNRPN small nuclear ribonucleoprotein polypeptide N JBrowse link 15 24,823,608 24,978,723 RGD:2290271
G SNU13 small nuclear ribonucleoprotein 13 JBrowse link 22 41,673,933 41,690,492 RGD:2290271
G SNURF SNRPN upstream reading frame JBrowse link 15 24,954,893 24,978,723 RGD:2290271
G SNW1 SNW domain containing 1 JBrowse link 14 77,717,599 77,761,156 RGD:2290271
G SRRM1 serine and arginine repetitive matrix 1 JBrowse link 1 24,643,273 24,673,281 RGD:2290271
G SRRM2 serine/arginine repetitive matrix 2 JBrowse link 16 2,750,903 2,771,412 RGD:2290271
G SRRT serrate, RNA effector molecule JBrowse link 7 100,874,971 100,888,664 RGD:2290271
G SRSF1 serine and arginine rich splicing factor 1 JBrowse link 17 58,000,919 58,007,346 RGD:2290271
G SRSF10 serine and arginine rich splicing factor 10 JBrowse link 1 23,964,347 23,980,370 RGD:2290271
G SRSF11 serine and arginine rich splicing factor 11 JBrowse link 1 70,205,696 70,253,052 RGD:2290271
G SRSF2 serine and arginine rich splicing factor 2 JBrowse link 17 76,734,115 76,737,411 RGD:2290271
G SRSF3 serine and arginine rich splicing factor 3 JBrowse link 6 36,594,313 36,605,600 RGD:2290271
G SRSF4 serine and arginine rich splicing factor 4 JBrowse link 1 29,147,743 29,181,900 RGD:2290271
G SRSF5 serine and arginine rich splicing factor 5 JBrowse link 14 69,767,112 69,772,005 RGD:2290271
G SRSF6 serine and arginine rich splicing factor 6 JBrowse link 20 43,457,893 43,464,243 RGD:2290271
G SRSF7 serine and arginine rich splicing factor 7 JBrowse link 2 38,743,599 38,751,494 RGD:2290271
G SRSF9 serine and arginine rich splicing factor 9 JBrowse link 12 120,461,672 120,469,748 RGD:2290271
G SUGP1 SURP and G-patch domain containing 1 JBrowse link 19 19,276,033 19,320,509 RGD:2290271
G SYF2 SYF2 pre-mRNA splicing factor JBrowse link 1 25,222,276 25,232,502 RGD:2290271
G SYMPK symplekin JBrowse link 19 45,815,410 45,863,167 RGD:2290271
G SYNCRIP synaptotagmin binding cytoplasmic RNA interacting protein JBrowse link 6 85,607,784 85,643,862 RGD:2290271
G TFIP11 tuftelin interacting protein 11 JBrowse link 22 26,491,240 26,513,591 RGD:2290271
G TRA2A transformer 2 alpha homolog JBrowse link 7 23,504,780 23,532,041 RGD:2290271
G TRA2B transformer 2 beta homolog JBrowse link 3 185,914,558 185,938,027 RGD:2290271
G TXNL4A thioredoxin like 4A JBrowse link 18 79,970,813 80,033,936 RGD:2290271
G TXNL4B thioredoxin like 4B JBrowse link 16 72,044,261 72,094,378 RGD:2290271
G U2AF1 U2 small nuclear RNA auxiliary factor 1 JBrowse link 21 43,092,956 43,108,291 RGD:2290271
G U2AF1L4 U2 small nuclear RNA auxiliary factor 1 like 4 JBrowse link 19 35,742,464 35,745,418 RGD:2290271
G U2AF1L5 U2 small nuclear RNA auxiliary factor 1 like 5 JBrowse link 21 6,484,623 6,499,969 RGD:2290271
G U2AF2 U2 small nuclear RNA auxiliary factor 2 JBrowse link 19 55,654,050 55,674,716 RGD:2290271
G U2SURP U2 snRNP associated SURP domain containing JBrowse link 3 143,001,570 143,060,725 RGD:2290271
G UBL5 ubiquitin like 5 JBrowse link 19 9,827,918 9,830,115 RGD:2290271
G UPF3B UPF3B regulator of nonsense mediated mRNA decay JBrowse link X 119,805,311 119,853,028 RGD:2290271
G USP39 ubiquitin specific peptidase 39 JBrowse link 2 85,602,843 85,649,284 RGD:2290271
G USP49 ubiquitin specific peptidase 49 JBrowse link 6 41,789,896 41,895,375 RGD:2290271
G WBP11 WW domain binding protein 11 JBrowse link 12 14,784,582 14,803,478 RGD:2290271
G WBP4 WW domain binding protein 4 JBrowse link 13 41,061,509 41,084,006 RGD:2290271
G WDR33 WD repeat domain 33 JBrowse link 2 127,701,027 127,811,187 RGD:2290271
G WDR83 WD repeat domain 83 JBrowse link 19 12,666,807 12,675,832 RGD:2290271
G XAB2 XPA binding protein 2 JBrowse link 19 7,619,525 7,629,545 RGD:2290271
G YBX1 Y-box binding protein 1 JBrowse link 1 42,682,418 42,703,805 RGD:2290271
G YTHDC1 YTH domain containing 1 JBrowse link 4 68,310,387 68,350,093 RGD:2290271
G ZCCHC8 zinc finger CCHC-type containing 8 JBrowse link 12 122,471,600 122,501,184 RGD:2290271
G ZCRB1 zinc finger CCHC-type and RNA binding motif containing 1 JBrowse link 12 42,312,086 42,326,107 RGD:2290271
G ZMAT2 zinc finger matrin-type 2 JBrowse link 5 140,700,447 140,706,686 RGD:2290271
G ZMAT5 zinc finger matrin-type 5 JBrowse link 22 29,730,956 29,767,011 RGD:2290271
G ZRSR2 zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2 JBrowse link X 15,790,451 15,826,807 RGD:2290271
G ZRSR2P1 ZRSR2 pseudogene 1 JBrowse link 5 112,891,616 112,893,097 RGD:2290271
negative regulation of mRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BARD1 BRCA1 associated RING domain 1 JBrowse link 2 214,725,645 214,809,683 RGD:2290271
negative regulation of mRNA polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CCNT1 cyclin T1 JBrowse link 12 48,688,458 48,716,707 RGD:2290271
G CDK9 cyclin dependent kinase 9 JBrowse link 9 127,786,034 127,790,792 RGD:2290271
G CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component JBrowse link 11 10,751,246 10,779,746 RGD:2290271
G NELFE negative elongation factor complex member E JBrowse link 6 31,952,087 31,959,043 RGD:2290271
G RNF20 ring finger protein 20 JBrowse link 9 101,533,853 101,563,344 RGD:2290271
G RNF40 ring finger protein 40 JBrowse link 16 30,761,612 30,800,231 RGD:2290271
G SUPT5H SPT5 homolog, DSIF elongation factor subunit JBrowse link 19 39,445,546 39,476,670 RGD:2290271
G ZC3H14 zinc finger CCCH-type containing 14 JBrowse link 14 88,562,982 88,627,596 RGD:2290271
negative regulation of mRNA splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACIN1 apoptotic chromatin condensation inducer 1 JBrowse link 14 23,058,564 23,095,614 RGD:2290271
G C1QBP complement C1q binding protein JBrowse link 17 5,432,777 5,439,155 RGD:2290271
G CELF4 CUGBP Elav-like family member 4 JBrowse link 18 37,243,040 37,565,798 RGD:2290271
G DYRK1A dual specificity tyrosine phosphorylation regulated kinase 1A JBrowse link 21 37,365,573 37,526,358 RGD:2290271
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 JBrowse link 7 26,189,920 26,200,775 RGD:2290271
G HNRNPK heterogeneous nuclear ribonucleoprotein K JBrowse link 9 83,968,083 83,980,782 RGD:2290271
G HNRNPL heterogeneous nuclear ribonucleoprotein L JBrowse link 19 38,836,370 38,852,347 RGD:2290271
G PTBP1 polypyrimidine tract binding protein 1 JBrowse link 19 797,452 812,316 RGD:2290271
G PTBP3 polypyrimidine tract binding protein 3 JBrowse link 9 112,217,715 112,333,669 RGD:2290271
G RBM10 RNA binding motif protein 10 JBrowse link X 47,145,196 47,186,815 RGD:2290271
G RBM42 RNA binding motif protein 42 JBrowse link 19 35,629,016 35,637,686 RGD:2290271
G RBMX RNA binding motif protein X-linked JBrowse link X 136,869,192 136,880,780 RGD:2290271
G RNPS1 RNA binding protein with serine rich domain 1 JBrowse link 16 2,253,116 2,268,126 RGD:2290271
G SAP18 Sin3A associated protein 18 JBrowse link 13 21,140,514 21,149,097 RGD:2290271
G SFSWAP splicing factor SWAP JBrowse link 12 131,711,088 131,799,738 RGD:2290271
G SRSF10 serine and arginine rich splicing factor 10 JBrowse link 1 23,964,347 23,980,370 RGD:2290271
G SRSF12 serine and arginine rich splicing factor 12 JBrowse link 6 89,095,957 89,118,071 RGD:2290271
G SRSF4 serine and arginine rich splicing factor 4 JBrowse link 1 29,147,743 29,181,900 RGD:2290271
G SRSF6 serine and arginine rich splicing factor 6 JBrowse link 20 43,457,893 43,464,243 RGD:2290271
G SRSF7 serine and arginine rich splicing factor 7 JBrowse link 2 38,743,599 38,751,494 RGD:2290271
G SRSF9 serine and arginine rich splicing factor 9 JBrowse link 12 120,461,672 120,469,748 RGD:2290271
G U2AF2 U2 small nuclear RNA auxiliary factor 2 JBrowse link 19 55,654,050 55,674,716 RGD:2290271
positive regulation of mRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CCNB1 cyclin B1 JBrowse link 5 69,167,010 69,178,245 RGD:2290271
G CDC73 cell division cycle 73 JBrowse link 1 193,122,031 193,254,815 RGD:2290271
G DHX36 DEAH-box helicase 36 JBrowse link 3 154,272,546 154,324,497 RGD:2290271
G LEO1 LEO1 homolog, Paf1/RNA polymerase II complex component JBrowse link 15 51,938,024 51,971,801 RGD:2290271
G NCBP1 nuclear cap binding protein subunit 1 JBrowse link 9 97,633,423 97,673,748 RGD:2290271
G NCBP2 nuclear cap binding protein subunit 2 JBrowse link 3 196,932,729 196,942,593 RGD:2290271
G PAF1 PAF1 homolog, Paf1/RNA polymerase II complex component JBrowse link 19 39,385,629 39,391,106 RGD:2290271
positive regulation of mRNA polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CPEB1 cytoplasmic polyadenylation element binding protein 1 JBrowse link 15 82,543,201 82,648,795 RGD:2290271
G CPEB3 cytoplasmic polyadenylation element binding protein 3 JBrowse link 10 92,046,692 92,291,499 RGD:2290271
G HSF1 heat shock transcription factor 1 JBrowse link 8 144,291,603 144,314,720 RGD:2290271
G NUDT21 nudix hydrolase 21 JBrowse link 16 56,429,133 56,451,332 RGD:2290271
positive regulation of mRNA splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CELF3 CUGBP Elav-like family member 3 JBrowse link 1 151,696,652 151,716,821 RGD:2290271
G CELF4 CUGBP Elav-like family member 4 JBrowse link 18 37,243,040 37,565,798 RGD:2290271
G CIRBP cold inducible RNA binding protein JBrowse link 19 1,269,268 1,274,880 RGD:2290271
G DAZAP1 DAZ associated protein 1 JBrowse link 19 1,407,586 1,435,684 RGD:2290271
G HMX2 H6 family homeobox 2 JBrowse link 10 123,142,421 123,150,673 RGD:2290271
G HSPA8 heat shock protein family A (Hsp70) member 8 JBrowse link 11 123,057,489 123,062,366 RGD:2290271
G NCBP1 nuclear cap binding protein subunit 1 JBrowse link 9 97,633,423 97,673,748 RGD:2290271
G NCL nucleolin JBrowse link 2 231,453,531 231,464,484 RGD:2290271
G NUP98 nucleoporin 98 and 96 precursor JBrowse link 11 3,675,010 3,797,554 RGD:2290271
G PRDX6 peroxiredoxin 6 JBrowse link 1 173,477,335 173,488,815 RGD:2290271
G PRPF19 pre-mRNA processing factor 19 JBrowse link 11 60,890,547 60,906,585 RGD:2290271
G RBM3 RNA binding motif protein 3 JBrowse link X 48,574,479 48,581,162 RGD:2290271
G RBMX RNA binding motif protein X-linked JBrowse link X 136,869,192 136,880,780 RGD:2290271
G RBMXL1 RBMX like 1 JBrowse link 1 88,979,456 88,992,960 RGD:2290271
G RBMY1B RNA binding motif protein Y-linked family 1 member B JBrowse link Y 21,511,338 21,527,212 RGD:2290271
G SF3B4 splicing factor 3b subunit 4 JBrowse link 1 149,923,317 149,927,803 RGD:2290271
G SLC39A5 solute carrier family 39 member 5 JBrowse link 12 56,230,036 56,237,850 RGD:2290271
G SNRNP70 small nuclear ribonucleoprotein U1 subunit 70 JBrowse link 19 49,085,451 49,108,606 RGD:2290271
G SNW1 SNW domain containing 1 JBrowse link 14 77,717,599 77,761,156 RGD:2290271
G STH saitohin JBrowse link 17 45,999,250 45,999,694 RGD:2290271
G THRAP3 thyroid hormone receptor associated protein 3 JBrowse link 1 36,224,429 36,305,357 RGD:2290271
G TRA2A transformer 2 alpha homolog JBrowse link 7 23,504,780 23,532,041 RGD:2290271
G TRA2B transformer 2 beta homolog JBrowse link 3 185,914,558 185,938,027 RGD:2290271
pre-mRNA cleavage required for polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CPSF1 cleavage and polyadenylation specific factor 1 JBrowse link 8 144,393,231 144,409,400 RGD:2290271
G CPSF4 cleavage and polyadenylation specific factor 4 JBrowse link 7 99,438,912 99,457,377 RGD:2290271
G CPSF4L cleavage and polyadenylation specific factor 4 like JBrowse link 17 73,242,343 73,263,778 RGD:2290271
G CPSF6 cleavage and polyadenylation specific factor 6 JBrowse link 12 69,239,568 69,274,358 RGD:2290271
G CPSF7 cleavage and polyadenylation specific factor 7 JBrowse link 11 61,402,648 61,429,992 RGD:2290271
G CSTF2 cleavage stimulation factor subunit 2 JBrowse link X 100,820,359 100,843,534 RGD:2290271
G CSTF2T cleavage stimulation factor subunit 2 tau variant JBrowse link 10 51,695,486 51,699,595 RGD:2290271
G FIP1L1 factor interacting with PAPOLA and CPSF1 JBrowse link 4 53,377,641 53,462,583 RGD:2290271
G NCBP1 nuclear cap binding protein subunit 1 JBrowse link 9 97,633,423 97,673,748 RGD:2290271
G NCBP2 nuclear cap binding protein subunit 2 JBrowse link 3 196,932,729 196,942,593 RGD:2290271
G NUDT21 nudix hydrolase 21 JBrowse link 16 56,429,133 56,451,332 RGD:2290271
G TUT1 terminal uridylyl transferase 1, U6 snRNA-specific JBrowse link 11 62,575,052 62,591,523 RGD:2290271
recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CDC73 cell division cycle 73 JBrowse link 1 193,122,031 193,254,815 RGD:2290271
G POLR2D RNA polymerase II subunit D JBrowse link 2 127,843,553 127,858,155 RGD:2290271
recruitment of mRNA capping enzyme to RNA polymerase II holoenzyme complex term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G RAMAC RNA guanine-7 methyltransferase activating subunit JBrowse link 15 82,986,210 82,991,057 RGD:2290271
regulation of alternative mRNA splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AP002373.1 novel transcript, RBM7-REXO2 readthrough RGD:2290271
G CELF1 CUGBP Elav-like family member 1 JBrowse link 11 47,465,937 47,565,539 RGD:2290271
G CELF2 CUGBP Elav-like family member 2 JBrowse link 10 10,462,515 11,336,675 RGD:2290271
G CELF3 CUGBP Elav-like family member 3 JBrowse link 1 151,696,652 151,716,821 RGD:2290271
G CELF4 CUGBP Elav-like family member 4 JBrowse link 18 37,243,040 37,565,798 RGD:2290271
G CELF5 CUGBP Elav-like family member 5 JBrowse link 19 3,224,661 3,297,076 RGD:2290271
G CELF6 CUGBP Elav-like family member 6 JBrowse link 15 72,284,727 72,320,157 RGD:2290271
G DDX17 DEAD-box helicase 17 JBrowse link 22 38,483,438 38,506,311 RGD:2290271
G DDX5 DEAD-box helicase 5 JBrowse link 17 64,498,254 64,506,866 RGD:2290271
G DYRK1A dual specificity tyrosine phosphorylation regulated kinase 1A JBrowse link 21 37,365,573 37,526,358 RGD:2290271
G FAM172A family with sequence similarity 172 member A JBrowse link 5 93,615,130 94,111,699 RGD:2290271
G FMR1 FMRP translational regulator 1 JBrowse link X 147,911,919 147,951,127 RGD:2290271
G FXR1 FMR1 autosomal homolog 1 JBrowse link 3 180,912,670 180,982,753 RGD:2290271
G FXR2 FMR1 autosomal homolog 2 JBrowse link 17 7,591,230 7,614,897 RGD:2290271
G HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 JBrowse link 12 54,280,726 54,287,087 RGD:2290271
G HNRNPL heterogeneous nuclear ribonucleoprotein L JBrowse link 19 38,836,370 38,852,347 RGD:2290271
G HNRNPU heterogeneous nuclear ribonucleoprotein U JBrowse link 1 244,850,297 244,864,543 RGD:2290271
G IK IK cytokine JBrowse link 5 140,647,818 140,662,480 RGD:2290271
G KHDRBS1 KH RNA binding domain containing, signal transduction associated 1 JBrowse link 1 32,013,868 32,060,850 RGD:2290271
G MAGOH mago homolog, exon junction complex subunit JBrowse link 1 53,226,900 53,238,518 RGD:2290271
G MBNL1 muscleblind like splicing regulator 1 JBrowse link 3 152,243,632 152,465,780 RGD:2290271
G MBNL2 muscleblind like splicing regulator 2 JBrowse link 13 97,222,289 97,394,120 RGD:2290271
G MBNL3 muscleblind like splicing regulator 3 JBrowse link X 132,369,314 132,490,035 RGD:2290271
G MYOD1 myogenic differentiation 1 JBrowse link 11 17,719,571 17,722,136 RGD:2290271
G NSRP1 nuclear speckle splicing regulatory protein 1 JBrowse link 17 30,116,807 30,186,475 RGD:2290271
G PTBP1 polypyrimidine tract binding protein 1 JBrowse link 19 797,452 812,316 RGD:2290271
G RBFOX1 RNA binding fox-1 homolog 1 JBrowse link 16 5,239,752 7,713,343 RGD:2290271
G RBFOX2 RNA binding fox-1 homolog 2 JBrowse link 22 35,738,734 36,028,892 RGD:2290271
G RBFOX3 RNA binding fox-1 homolog 3 JBrowse link 17 79,089,345 79,665,600 RGD:2290271
G RBM10 RNA binding motif protein 10 JBrowse link X 47,145,196 47,186,815 RGD:2290271
G RBM11 RNA binding motif protein 11 JBrowse link 21 14,216,107 14,228,372 RGD:2290271
G RBM14-RBM4 RBM14-RBM4 readthrough JBrowse link 11 66,616,582 66,646,473 RGD:2290271
G RBM15 RNA binding motif protein 15 JBrowse link 1 110,339,323 110,346,681 RGD:2290271
G RBM15B RNA binding motif protein 15B JBrowse link 3 51,391,285 51,397,908 RGD:2290271
G RBM17 RNA binding motif protein 17 JBrowse link 10 6,089,034 6,117,459 RGD:2290271
G RBM19 RNA binding motif protein 19 JBrowse link 12 113,816,740 113,966,371 RGD:2290271
G RBM24 RNA binding motif protein 24 JBrowse link 6 17,281,361 17,293,875 RGD:2290271
G RBM25 RNA binding motif protein 25 JBrowse link 14 73,058,532 73,123,899 RGD:2290271
G RBM4 RNA binding motif protein 4 JBrowse link 11 66,638,617 66,668,380 RGD:2290271
G RBM4B RNA binding motif protein 4B JBrowse link 11 66,664,998 66,677,887 RGD:2290271
G RBM5 RNA binding motif protein 5 JBrowse link 3 50,088,919 50,119,021 RGD:2290271
G RBM7 RNA binding motif protein 7 JBrowse link 11 114,400,529 114,410,610 RGD:2290271
G RBM8A RNA binding motif protein 8A JBrowse link 1 145,921,556 145,927,484 RGD:2290271
G RBMX RNA binding motif protein X-linked JBrowse link X 136,869,192 136,880,780 RGD:2290271
G RBMY1A1 RNA binding motif protein Y-linked family 1 member A1 JBrowse link Y 21,534,879 21,559,683 RGD:2290271
G RBMY1D RNA binding motif protein Y-linked family 1 member D JBrowse link Y 21,869,718 21,900,746 RGD:2290271
G RBMY1F RNA binding motif protein Y-linked family 1 member F JBrowse link Y 22,167,099 22,183,008 RGD:2290271
G RBMY1J RNA binding motif protein Y-linked family 1 member J JBrowse link Y 22,403,410 22,419,317 RGD:2290271
G REST RE1 silencing transcription factor JBrowse link 4 56,907,900 56,935,847 RGD:2290271
G RNPS1 RNA binding protein with serine rich domain 1 JBrowse link 16 2,253,116 2,268,126 RGD:2290271
G SAP18 Sin3A associated protein 18 JBrowse link 13 21,140,514 21,149,097 RGD:2290271
G SART3 spliceosome associated factor 3, U4/U6 recycling protein JBrowse link 12 108,522,214 108,561,173 RGD:2290271
G SMU1 SMU1 DNA replication regulator and spliceosomal factor JBrowse link 9 33,041,765 33,076,705 RGD:2290271
G SREK1 splicing regulatory glutamic acid and lysine rich protein 1 JBrowse link 5 66,144,300 66,183,616 RGD:2290271
G SRRM4 serine/arginine repetitive matrix 4 JBrowse link 12 118,981,541 119,163,051 RGD:2290271
G SRSF1 serine and arginine rich splicing factor 1 JBrowse link 17 58,000,919 58,007,346 RGD:2290271
G SRSF10 serine and arginine rich splicing factor 10 JBrowse link 1 23,964,347 23,980,370 RGD:2290271
G SRSF12 serine and arginine rich splicing factor 12 JBrowse link 6 89,095,957 89,118,071 RGD:2290271
G SRSF2 serine and arginine rich splicing factor 2 JBrowse link 17 76,734,115 76,737,411 RGD:2290271
G SRSF3 serine and arginine rich splicing factor 3 JBrowse link 6 36,594,313 36,605,600 RGD:2290271
G SRSF4 serine and arginine rich splicing factor 4 JBrowse link 1 29,147,743 29,181,900 RGD:2290271
G SRSF5 serine and arginine rich splicing factor 5 JBrowse link 14 69,767,112 69,772,005 RGD:2290271
G SRSF6 serine and arginine rich splicing factor 6 JBrowse link 20 43,457,893 43,464,243 RGD:2290271
G SRSF7 serine and arginine rich splicing factor 7 JBrowse link 2 38,743,599 38,751,494 RGD:2290271
G SRSF8 serine and arginine rich splicing factor 8 JBrowse link 11 95,066,877 95,071,227 RGD:2290271
G SRSF9 serine and arginine rich splicing factor 9 JBrowse link 12 120,461,672 120,469,748 RGD:2290271
G THRAP3 thyroid hormone receptor associated protein 3 JBrowse link 1 36,224,429 36,305,357 RGD:2290271
G TRA2B transformer 2 beta homolog JBrowse link 3 185,914,558 185,938,027 RGD:2290271
G WTAP WT1 associated protein JBrowse link 6 159,726,696 159,756,319 RGD:2290271
G YTHDC1 YTH domain containing 1 JBrowse link 4 68,310,387 68,350,093 RGD:2290271
G ZBTB7A zinc finger and BTB domain containing 7A JBrowse link 19 4,043,303 4,066,899 RGD:2290271
G ZC3H10 zinc finger CCCH-type containing 10 JBrowse link 12 56,118,266 56,127,514 RGD:2290271
regulation of mRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AHCYL1 adenosylhomocysteinase like 1 JBrowse link 1 109,984,765 110,023,742 RGD:2290271
G PAPOLA poly(A) polymerase alpha JBrowse link 14 96,502,376 96,567,116 RGD:2290271
G ZFP36L1 ZFP36 ring finger protein like 1 JBrowse link 14 68,787,655 68,796,243 RGD:2290271
regulation of mRNA polyadenylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NCBP1 nuclear cap binding protein subunit 1 JBrowse link 9 97,633,423 97,673,748 RGD:2290271
G NCBP2 nuclear cap binding protein subunit 2 JBrowse link 3 196,932,729 196,942,593 RGD:2290271
G SNRPA small nuclear ribonucleoprotein polypeptide A JBrowse link 19 40,751,203 40,765,389 RGD:2290271
G ZC3H3 zinc finger CCCH-type containing 3 JBrowse link 8 143,437,655 143,549,729 RGD:2290271
regulation of mRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CDK11A cyclin dependent kinase 11A JBrowse link 1 1,702,379 1,724,357 RGD:2290271
G CDK11B cyclin dependent kinase 11B JBrowse link 1 1,635,225 1,659,619 RGD:2290271
G DHX9 DExH-box helicase 9 JBrowse link 1 182,839,347 182,887,982 RGD:2290271
G IWS1 interacts with SUPT6H, CTD assembly factor 1 JBrowse link 2 127,480,807 127,526,886 RGD:2290271
G NCBP1 nuclear cap binding protein subunit 1 JBrowse link 9 97,633,423 97,673,748 RGD:2290271
G PTCD2 pentatricopeptide repeat domain 2 JBrowse link 5 72,320,367 72,368,395 RGD:2290271
G SAFB scaffold attachment factor B JBrowse link 19 5,623,081 5,668,478 RGD:2290271
G SAFB2 scaffold attachment factor B2 JBrowse link 19 5,586,993 5,622,846 RGD:2290271
G SLTM SAFB like transcription modulator JBrowse link 15 58,879,050 58,934,313 RGD:2290271
G SRPK1 SRSF protein kinase 1 JBrowse link 6 35,832,966 35,921,180 RGD:2290271
G SRPK2 SRSF protein kinase 2 JBrowse link 7 105,110,708 105,399,363 RGD:2290271
G SRPK3 SRSF protein kinase 3 JBrowse link X 153,781,001 153,785,732 RGD:2290271
G SUPT6H SPT6 homolog, histone chaperone and transcription elongation factor JBrowse link 17 28,662,183 28,702,679 RGD:2290271
regulation of mRNA splicing, via spliceosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G C9orf78 chromosome 9 open reading frame 78 JBrowse link 9 129,827,290 129,835,307 RGD:2290271
G CWC22 CWC22 spliceosome associated protein homolog JBrowse link 2 179,944,876 180,007,297 RGD:2290271
G JMJD6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase JBrowse link 17 76,712,830 76,726,799 RGD:2290271
G KHDRBS1 KH RNA binding domain containing, signal transduction associated 1 JBrowse link 1 32,013,868 32,060,850 RGD:2290271
G KHDRBS2 KH RNA binding domain containing, signal transduction associated 2 JBrowse link 6 61,542,697 62,286,227 RGD:2290271
G KHDRBS3 KH RNA binding domain containing, signal transduction associated 3 JBrowse link 8 135,457,456 135,656,516 RGD:2290271
G METTL16 methyltransferase like 16 JBrowse link 17 2,416,049 2,511,901 RGD:2290271
G RBM42 RNA binding motif protein 42 JBrowse link 19 35,629,016 35,637,686 RGD:2290271
G SON SON DNA and RNA binding protein JBrowse link 21 33,543,038 33,577,514 RGD:2290271
G SRPK1 SRSF protein kinase 1 JBrowse link 6 35,832,966 35,921,180 RGD:2290271
G SRPK2 SRSF protein kinase 2 JBrowse link 7 105,110,708 105,399,363 RGD:2290271
G SRSF10 serine and arginine rich splicing factor 10 JBrowse link 1 23,964,347 23,980,370 RGD:2290271
G SRSF3 serine and arginine rich splicing factor 3 JBrowse link 6 36,594,313 36,605,600 RGD:2290271
G TIA1 TIA1 cytotoxic granule associated RNA binding protein JBrowse link 2 70,209,444 70,248,793 RGD:2290271
G YTHDC1 YTH domain containing 1 JBrowse link 4 68,310,387 68,350,093 RGD:2290271
spliceosomal complex assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CRNKL1 crooked neck pre-mRNA splicing factor 1 JBrowse link 20 20,034,361 20,056,046 RGD:2290271
G DDX1 DEAD-box helicase 1 JBrowse link 2 15,591,868 15,631,101 RGD:2290271
G DDX39B DExD-box helicase 39B JBrowse link 6 31,530,226 31,542,003 RGD:2290271
G GCFC2 GC-rich sequence DNA-binding factor 2 JBrowse link 2 75,655,606 75,711,642 RGD:2290271
G GEMIN2 gem nuclear organelle associated protein 2 JBrowse link 14 39,114,261 39,136,973 RGD:2290271
G GEMIN6 gem nuclear organelle associated protein 6 JBrowse link 2 38,778,210 38,785,002 RGD:2290271
G NCBP1 nuclear cap binding protein subunit 1 JBrowse link 9 97,633,423 97,673,748 RGD:2290271
G PRPF19 pre-mRNA processing factor 19 JBrowse link 11 60,890,547 60,906,585 RGD:2290271
G PRPF6 pre-mRNA processing factor 6 JBrowse link 20 63,981,132 64,033,100 RGD:2290271
G RBM5 RNA binding motif protein 5 JBrowse link 3 50,088,919 50,119,021 RGD:2290271
G SCAF11 SR-related CTD associated factor 11 JBrowse link 12 45,919,131 45,992,040 RGD:2290271
G SF1 splicing factor 1 JBrowse link 11 64,764,604 64,778,844 RGD:2290271
G SF3A2 splicing factor 3a subunit 2 JBrowse link 19 2,236,824 2,248,655 RGD:2290271
G SF3B1 splicing factor 3b subunit 1 JBrowse link 2 197,389,784 197,435,093 RGD:2290271
G SMN1 survival of motor neuron 1, telomeric JBrowse link 5 70,924,941 70,953,015 RGD:2290271
G SMN2 survival of motor neuron 2, centromeric JBrowse link 5 70,049,523 70,077,595 RGD:2290271
G SNRPD1 small nuclear ribonucleoprotein D1 polypeptide JBrowse link 18 21,612,314 21,633,520 RGD:2290271
G SNRPD2 small nuclear ribonucleoprotein D2 polypeptide JBrowse link 19 45,687,454 45,692,316 RGD:2290271
G SNRPE small nuclear ribonucleoprotein polypeptide E JBrowse link 1 203,861,599 203,871,152 RGD:2290271
G SNRPG small nuclear ribonucleoprotein polypeptide G JBrowse link 2 70,281,362 70,293,771 RGD:2290271
G SRPK1 SRSF protein kinase 1 JBrowse link 6 35,832,966 35,921,180 RGD:2290271
G SRPK2 SRSF protein kinase 2 JBrowse link 7 105,110,708 105,399,363 RGD:2290271
G SRPK3 SRSF protein kinase 3 JBrowse link X 153,781,001 153,785,732 RGD:2290271
G TXNL4A thioredoxin like 4A JBrowse link 18 79,970,813 80,033,936 RGD:2290271
G USP39 ubiquitin specific peptidase 39 JBrowse link 2 85,602,843 85,649,284 RGD:2290271
G ZRSR2 zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2 JBrowse link X 15,790,451 15,826,807 RGD:2290271
spliceosomal complex disassembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DHX8 DEAH-box helicase 8 JBrowse link 17 43,483,865 43,544,799 RGD:2290271
G TFIP11 tuftelin interacting protein 11 JBrowse link 22 26,491,240 26,513,591 RGD:2290271
spliceosomal snRNP assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CLNS1A chloride nucleotide-sensitive channel 1A JBrowse link 11 77,614,530 77,637,806 RGD:2290271
G COIL coilin JBrowse link 17 56,938,199 56,961,050 RGD:2290271
G DDX20 DEAD-box helicase 20 JBrowse link 1 111,755,901 111,768,000 RGD:2290271
G GEMIN2 gem nuclear organelle associated protein 2 JBrowse link 14 39,114,261 39,136,973 RGD:2290271
G GEMIN4 gem nuclear organelle associated protein 4 JBrowse link 17 744,421 752,868 RGD:2290271
G GEMIN5 gem nuclear organelle associated protein 5 JBrowse link 5 154,887,411 154,938,216 RGD:2290271
G GEMIN6 gem nuclear organelle associated protein 6 JBrowse link 2 38,778,210 38,785,002 RGD:2290271
G GEMIN7 gem nuclear organelle associated protein 7 JBrowse link 19 45,075,627 45,091,518 RGD:2290271
G GEMIN8 gem nuclear organelle associated protein 8 JBrowse link X 14,002,494 14,029,918 RGD:2290271
G GGT1 gamma-glutamyltransferase 1 JBrowse link 22 24,583,750 24,629,005 RGD:2290271
G LSM4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 19 18,306,236 18,323,076 RGD:2290271
G PRMT5 protein arginine methyltransferase 5 JBrowse link 14 22,920,526 22,929,392 RGD:2290271
G PRMT7 protein arginine methyltransferase 7 JBrowse link 16 68,310,982 68,360,876 RGD:2290271
G SART1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP JBrowse link 11 65,961,727 65,980,137 RGD:2290271
G SART3 spliceosome associated factor 3, U4/U6 recycling protein JBrowse link 12 108,522,214 108,561,173 RGD:2290271
G SMN1 survival of motor neuron 1, telomeric JBrowse link 5 70,924,941 70,953,015 RGD:2290271
G SMN2 survival of motor neuron 2, centromeric JBrowse link 5 70,049,523 70,077,595 RGD:2290271
G SNRPB small nuclear ribonucleoprotein polypeptides B and B1 JBrowse link 20 2,461,642 2,470,789 RGD:2290271
G SNRPC small nuclear ribonucleoprotein polypeptide C JBrowse link 6 34,757,094 34,773,857 RGD:2290271
G SNRPD1 small nuclear ribonucleoprotein D1 polypeptide JBrowse link 18 21,612,314 21,633,520 RGD:2290271
G SNRPD2 small nuclear ribonucleoprotein D2 polypeptide JBrowse link 19 45,687,454 45,692,316 RGD:2290271
G SNRPD3 small nuclear ribonucleoprotein D3 polypeptide JBrowse link 22 24,555,650 24,574,971 RGD:2290271
G SNRPE small nuclear ribonucleoprotein polypeptide E JBrowse link 1 203,861,599 203,871,152 RGD:2290271
G SNRPF small nuclear ribonucleoprotein polypeptide F JBrowse link 12 95,858,952 95,867,053 RGD:2290271
G SNRPG small nuclear ribonucleoprotein polypeptide G JBrowse link 2 70,281,362 70,293,771 RGD:2290271
G SNRPGP15 small nuclear ribonucleoprotein polypeptide G pseudogene 15 JBrowse link 19 14,489,297 14,489,890 RGD:2290271
G SNUPN snurportin 1 JBrowse link 15 75,598,083 75,626,378 RGD:2290271
G STRAP serine/threonine kinase receptor associated protein JBrowse link 12 15,882,382 15,903,478 RGD:2290271
G TGS1 trimethylguanosine synthase 1 JBrowse link 8 55,773,446 55,826,445 RGD:2290271
G WDR77 WD repeat domain 77 JBrowse link 1 111,439,890 111,449,308 RGD:2290271
spliceosomal tri-snRNP complex assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AAR2 AAR2 splicing factor JBrowse link 20 36,236,136 36,256,941 RGD:2290271
G CD2BP2 CD2 cytoplasmic tail binding protein 2 JBrowse link 16 30,350,766 30,355,308 RGD:2290271
G DDX20 DEAD-box helicase 20 JBrowse link 1 111,755,901 111,768,000 RGD:2290271
G LSM2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 6 31,797,396 31,806,966 RGD:2290271
G PRPF19 pre-mRNA processing factor 19 JBrowse link 11 60,890,547 60,906,585 RGD:2290271
G PRPF3 pre-mRNA processing factor 3 JBrowse link 1 150,321,468 150,353,233 RGD:2290271
G PRPF31 pre-mRNA processing factor 31 JBrowse link 19 54,115,706 54,131,719 RGD:2290271
G PRPF6 pre-mRNA processing factor 6 JBrowse link 20 63,981,132 64,033,100 RGD:2290271
G PRPF8 pre-mRNA processing factor 8 JBrowse link 17 1,650,629 1,684,880 RGD:2290271
G SART3 spliceosome associated factor 3, U4/U6 recycling protein JBrowse link 12 108,522,214 108,561,173 RGD:2290271
G SRSF10 serine and arginine rich splicing factor 10 JBrowse link 1 23,964,347 23,980,370 RGD:2290271
G SRSF12 serine and arginine rich splicing factor 12 JBrowse link 6 89,095,957 89,118,071 RGD:2290271
G USP4 ubiquitin specific peptidase 4 JBrowse link 3 49,277,144 49,340,053 RGD:2290271
spliceosome conformational change to release U4 (or U4atac) and U1 (or U11) term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SNRNP200 small nuclear ribonucleoprotein U5 subunit 200 JBrowse link 2 96,274,338 96,305,546 RGD:2290271
U2-type prespliceosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G SF3A1 splicing factor 3a subunit 1 JBrowse link 22 30,331,988 30,356,894 RGD:2290271
G SF3A2 splicing factor 3a subunit 2 JBrowse link 19 2,236,824 2,248,655 RGD:2290271
G SF3A3 splicing factor 3a subunit 3 JBrowse link 1 37,956,975 37,990,022 RGD:2290271

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17988
    metabolic process 11592
      organic substance metabolic process 11012
        macromolecule metabolic process 9482
          gene expression 5521
            RNA processing 950
              mRNA processing 523
                7-methylguanosine mRNA capping + 33
                chloroplast mRNA processing 0
                mRNA 3'-end processing + 106
                mRNA cleavage involved in mRNA processing + 13
                mRNA splicing, via endonucleolytic cleavage and ligation 1
                mRNA splicing, via spliceosome + 357
                mitochondrial mRNA processing + 2
                negative regulation of mRNA processing + 31
                polycistronic mRNA processing + 0
                positive regulation of mRNA processing + 33
                regulation of mRNA processing + 147
Path 2
Term Annotations click to browse term
  biological_process 17988
    metabolic process 11592
      cellular metabolic process 10880
        cellular aromatic compound metabolic process 6012
          nucleobase-containing compound metabolic process 5789
            nucleic acid metabolic process 5254
              RNA metabolic process 4755
                RNA processing 950
                  mRNA processing 523
                    7-methylguanosine mRNA capping + 33
                    chloroplast mRNA processing 0
                    mRNA 3'-end processing + 106
                    mRNA cleavage involved in mRNA processing + 13
                    mRNA splicing, via endonucleolytic cleavage and ligation 1
                    mRNA splicing, via spliceosome + 357
                    mitochondrial mRNA processing + 2
                    negative regulation of mRNA processing + 31
                    polycistronic mRNA processing + 0
                    positive regulation of mRNA processing + 33
                    regulation of mRNA processing + 147
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.