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ONTOLOGY REPORT - ANNOTATIONS


Term:tRNA metabolic process
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Accession:GO:0006399 term browser browse the term
Definition:The chemical reactions and pathways involving tRNA, transfer RNA, a class of relatively small RNA molecules responsible for mediating the insertion of amino acids into the sequence of nascent polypeptide chains during protein synthesis. Transfer RNA is characterized by the presence of many unusual minor bases, the function of which has not been completely established.
Synonyms:exact_synonym: tRNA metabolism


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tRNA metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dtd1 D-aminoacyl-tRNA deacylase 1 JBrowse link 3 138,770,573 138,931,544 RGD:13792537
G Dtd2 D-aminoacyl-tRNA deacylase 2 JBrowse link 6 72,781,229 72,786,835 RGD:13792537
alanyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aars alanyl-tRNA synthetase JBrowse link 19 43,193,264 43,215,281 RGD:2302982
RGD:13792537
RGD:1624291
G Aars2 alanyl-tRNA synthetase 2, mitochondrial JBrowse link 9 17,869,301 17,881,762 RGD:13792537
G Aarsd1 alanyl-tRNA synthetase domain containing 1 JBrowse link 10 89,317,974 89,331,078 RGD:1600115
aminoacyl-tRNA metabolism involved in translational fidelity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aars alanyl-tRNA synthetase JBrowse link 19 43,193,264 43,215,281 RGD:1600115
G Aars2 alanyl-tRNA synthetase 2, mitochondrial JBrowse link 9 17,869,301 17,881,762 RGD:1600115
G Aarsd1 alanyl-tRNA synthetase domain containing 1 JBrowse link 10 89,317,974 89,331,078 RGD:1600115
G Dtd1 D-aminoacyl-tRNA deacylase 1 JBrowse link 3 138,770,573 138,931,544 RGD:1600115
G Dtd2 D-aminoacyl-tRNA deacylase 2 JBrowse link 6 72,781,229 72,786,835 RGD:1624291
G Iars1 isoleucyl-tRNA synthetase 1 JBrowse link 17 15,356,016 15,402,680 RGD:1600115
G Iars2 isoleucyl-tRNA synthetase 2, mitochondrial JBrowse link 13 103,229,868 103,265,019 RGD:1600115
G Lars1 leucyl-tRNA synthetase 1 JBrowse link 18 36,524,013 36,579,471 RGD:1600115
G Lars2 leucyl-tRNA synthetase 2, mitochondrial JBrowse link 8 132,441,277 132,537,176 RGD:1600115
G LOC103690033 isoleucine--tRNA ligase, cytoplasmic-like JBrowse link 17 14,541,646 14,562,733 RGD:1600115
G Prorsd1 prolyl-tRNA synthetase associated domain containing 1 JBrowse link 14 113,938,061 113,940,330 RGD:1600115
G Tars2 threonyl-tRNA synthetase 2, mitochondrial JBrowse link 2 197,861,071 197,881,347 RGD:1600115
G Vars1 valyl-tRNA synthetase 1 JBrowse link 20 4,993,539 5,008,259 RGD:1600115
G Vars2 valyl-tRNA synthetase 2, mitochondrial JBrowse link 20 3,588,462 3,599,514 RGD:1600115
arginyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dalrd3 DALR anticodon binding domain containing 3 JBrowse link 8 117,355,943 117,358,819 RGD:1600115
G Rars1 arginyl-tRNA synthetase 1 JBrowse link 10 20,633,630 20,658,074 RGD:2303394
RGD:13792537
RGD:1624291
G Rars2 arginyl-tRNA synthetase 2, mitochondrial JBrowse link 5 50,075,510 50,127,625 RGD:13792537
asparaginyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nars1 asparaginyl-tRNA synthetase 1 JBrowse link 18 59,986,350 60,002,644 RGD:1624291
G Nars2 asparaginyl-tRNA synthetase 2, mitochondrial JBrowse link 1 161,922,132 162,035,817 RGD:1600115
aspartyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dars aspartyl-tRNA synthetase JBrowse link 13 45,074,067 45,127,815 RGD:13792537
conversion of methionyl-tRNA to N-formyl-methionyl-tRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mtfmt mitochondrial methionyl-tRNA formyltransferase JBrowse link 8 70,952,209 70,986,393 RGD:13792537
cysteinyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cars cysteinyl-tRNA synthetase JBrowse link 1 216,759,367 216,801,652 RGD:1624291
RGD:13792537
G Cars2 cysteinyl-tRNA synthetase 2, mitochondrial JBrowse link 16 83,288,613 83,325,706 RGD:13792537
endonucleolytic cleavage involved in tRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rpp40 ribonuclease P/MRP subunit p40 JBrowse link 17 29,638,647 29,647,709 RGD:13792537
glutaminyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lars1 leucyl-tRNA synthetase 1 JBrowse link 18 36,524,013 36,579,471 RGD:1624291
G LOC100911132 glutamine--tRNA ligase-like RGD:13792537
G Qars1 glutaminyl-tRNA synthetase 1 JBrowse link 8 117,297,670 117,305,708 RGD:1600115
RGD:13792537
RGD:1624291
glutaminyl-tRNAGln biosynthesis via transamidation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gatb glutamyl-tRNA amidotransferase subunit B JBrowse link 2 184,600,695 184,679,980 RGD:1624291
RGD:13792537
G Gatc glutamyl-tRNA amidotransferase subunit C JBrowse link 12 47,031,545 47,039,556 RGD:1624291
RGD:13792537
RGD:1600115
G Qrsl1 glutaminyl-tRNA amidotransferase subunit QRSL1 JBrowse link 20 48,855,839 48,881,112 RGD:1624291
RGD:13792537
glutamyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ears2 glutamyl-tRNA synthetase 2, mitochondrial JBrowse link 1 191,997,512 192,025,350 RGD:1624291
RGD:13792537
G Eprs glutamyl-prolyl-tRNA synthetase JBrowse link 13 103,300,911 103,371,651 RGD:1600115
glycyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gars glycyl-tRNA synthetase JBrowse link 4 85,235,122 85,276,085 RGD:1624291
RGD:13792537
histidyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hars1 histidyl-tRNA synthetase 1 JBrowse link 18 29,611,545 29,629,087 RGD:1624291
RGD:13792537
G Hars2 histidyl-tRNA synthetase 2, mitochondrial JBrowse link 18 29,629,203 29,638,460 RGD:1624291
RGD:13792537
isoleucyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Iars1 isoleucyl-tRNA synthetase 1 JBrowse link 17 15,356,016 15,402,680 RGD:1624291
RGD:13792537
G Iars2 isoleucyl-tRNA synthetase 2, mitochondrial JBrowse link 13 103,229,868 103,265,019 RGD:13792537
G LOC103690033 isoleucine--tRNA ligase, cytoplasmic-like JBrowse link 17 14,541,646 14,562,733 RGD:13792537
leucyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lars1 leucyl-tRNA synthetase 1 JBrowse link 18 36,524,013 36,579,471 RGD:1624291
RGD:13792537
G Lars2 leucyl-tRNA synthetase 2, mitochondrial JBrowse link 8 132,441,277 132,537,176 RGD:1624291
RGD:13792537
lysyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Kars lysyl-tRNA synthetase JBrowse link 19 44,212,205 44,231,209 RGD:2303393
RGD:13792537
RGD:1624291
RGD:12911009
RGD:2303394
methionyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LOC100911305 methionine--tRNA ligase, mitochondrial-like JBrowse link 9 61,823,441 61,826,357 RGD:13792537
G Mars1 methionyl-tRNA synthetase 1 JBrowse link 7 70,585,011 70,602,425 RGD:1624291
G Mars2 methionyl-tRNA synthetase 2, mitochondrial JBrowse link 9 64,434,814 64,437,730 RGD:1624291
RGD:13792537
mitochondrial alanyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aars alanyl-tRNA synthetase JBrowse link 19 43,193,264 43,215,281 RGD:13792537
G Aars2 alanyl-tRNA synthetase 2, mitochondrial JBrowse link 9 17,869,301 17,881,762 RGD:1624291
RGD:13792537
RGD:1600115
mitochondrial asparaginyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dars2 aspartyl-tRNA synthetase 2 (mitochondrial) JBrowse link 13 78,857,638 78,885,464 RGD:1624291
RGD:1600115
mitochondrial glycyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gars glycyl-tRNA synthetase JBrowse link 4 85,235,122 85,276,085 RGD:13792537
mitochondrial seryl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sars2 seryl-tRNA synthetase 2, mitochondrial JBrowse link 1 86,923,769 86,935,506 RGD:13792537
mitochondrial tRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hsd17b10 hydroxysteroid (17-beta) dehydrogenase 10 JBrowse link X 21,696,796 21,699,241 RGD:1600115
RGD:1624291
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit JBrowse link 11 47,047,342 47,052,420 RGD:1624291
G Trnt1 tRNA nucleotidyl transferase 1 JBrowse link 4 138,855,497 138,869,217 RGD:1624291
mitochondrial tRNA 3'-trailer cleavage, endonucleolytic term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Elac2 elaC ribonuclease Z 2 JBrowse link 10 51,478,378 51,501,167 RGD:1600115
RGD:13792537
RGD:1624291
mitochondrial tRNA 5'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hsd17b10 hydroxysteroid (17-beta) dehydrogenase 10 JBrowse link X 21,696,796 21,699,241 RGD:1600115
RGD:1624291
G Prorp protein only RNase P catalytic subunit JBrowse link 6 76,079,880 76,171,298 RGD:1624291
RGD:1600115
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit JBrowse link 11 47,047,342 47,052,420 RGD:1624291
RGD:1600115
mitochondrial tRNA methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hsd17b10 hydroxysteroid (17-beta) dehydrogenase 10 JBrowse link X 21,696,796 21,699,241 RGD:1600115
RGD:1624291
G Trmt5 tRNA methyltransferase 5 JBrowse link 6 96,164,579 96,171,680 RGD:1624291
RGD:13792537
mitochondrial tRNA modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdk5rap1 CDK5 regulatory subunit associated protein 1 JBrowse link 3 149,835,953 149,870,429 RGD:1624291
mitochondrial tRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Trmt10a tRNA methyltransferase 10A JBrowse link 2 243,422,811 243,437,533 RGD:13792537
G Trmt10b tRNA methyltransferase 10B JBrowse link 5 60,841,517 60,866,480 RGD:13792537
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit JBrowse link 11 47,047,342 47,052,420 RGD:1624291
RGD:13792537
RGD:1600115
mitochondrial tRNA wobble uridine modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mto1 mitochondrial tRNA translation optimization 1 JBrowse link 8 85,807,703 85,832,263 RGD:1624291
RGD:13792537
mitochondrial tryptophanyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Wars2 tryptophanyl tRNA synthetase 2 (mitochondrial) JBrowse link 2 201,170,363 201,256,115 RGD:13792537
mitochondrial tyrosyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Yars2 tyrosyl-tRNA synthetase 2 JBrowse link 11 88,882,615 88,888,377 RGD:1624291
nuclear polyadenylation-dependent tRNA catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Exosc10 exosome component 10 JBrowse link 5 165,374,964 165,398,195 RGD:13792537
G Exosc2 exosome component 2 JBrowse link 3 10,151,734 10,161,997 RGD:13792537
G Exosc3 exosome component 3 JBrowse link 5 60,866,498 60,871,734 RGD:13792537
G Exosc7 exosome component 7 JBrowse link 8 132,204,628 132,229,968 RGD:13792537
G Exosc8 exosome component 8 JBrowse link 2 143,925,643 143,932,240 RGD:13792537
G Exosc9 exosome component 9 JBrowse link 2 123,264,679 123,275,623 RGD:13792537
phenylalanyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fars2 phenylalanyl-tRNA synthetase 2, mitochondrial JBrowse link 17 29,006,981 29,438,906 RGD:1600115
RGD:13792537
RGD:1624291
G Farsa phenylalanyl-tRNA synthetase subunit alpha JBrowse link 19 25,969,255 25,978,777 RGD:1624291
RGD:13792537
RGD:1600115
G Farsb phenylalanyl-tRNA synthetase subunit beta JBrowse link 9 84,324,456 84,383,674 RGD:1624291
RGD:13792537
prolyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07062535.1 RGD:13792537
G Eprs glutamyl-prolyl-tRNA synthetase JBrowse link 13 103,300,911 103,371,651 RGD:1624291
RGD:13792537
G Pars2 prolyl-tRNA synthetase 2, mitochondrial JBrowse link 5 126,254,090 126,259,204 RGD:13792537
selenocysteinyl-tRNA(Sec) biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sars1 seryl-tRNA synthetase 1 JBrowse link 2 211,219,743 211,235,475 RGD:1600115
G Sepsecs Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase JBrowse link 14 60,657,730 60,687,950 RGD:1600115
seryl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sars1 seryl-tRNA synthetase 1 JBrowse link 2 211,219,743 211,235,475 RGD:1600115
RGD:13792537
RGD:1624291
G Sars2 seryl-tRNA synthetase 2, mitochondrial JBrowse link 1 86,923,769 86,935,506 RGD:13792537
threonyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tars1 threonyl-tRNA synthetase 1 JBrowse link 2 61,394,632 61,414,115 RGD:1600115
RGD:13792537
RGD:1624291
G Tars2 threonyl-tRNA synthetase 2, mitochondrial JBrowse link 2 197,861,071 197,881,347 RGD:13792537
G Tars3 threonyl-tRNA synthetase 3 JBrowse link 1 126,523,169 126,559,493 RGD:1624291
RGD:13792537
tRNA (guanine-N7)-methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mettl1 methyltransferase like 1 JBrowse link 7 70,328,470 70,333,045 RGD:1600115
G Wdr4 WD repeat domain 4 JBrowse link 20 10,240,571 10,264,818 RGD:1600115
tRNA 3'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ptcd1 pentatricopeptide repeat domain 1 JBrowse link 12 11,215,795 11,233,633 RGD:1600115
RGD:13792537
G Ssb small RNA binding exonuclease protection factor La JBrowse link 3 56,092,425 56,102,008 RGD:1624291
tRNA 3'-terminal CCA addition term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Trnt1 tRNA nucleotidyl transferase 1 JBrowse link 4 138,855,497 138,869,217 RGD:1624291
tRNA 3'-trailer cleavage term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Polr3k RNA polymerase III subunit K JBrowse link 3 177,374,812 177,379,009 RGD:1600115
tRNA 3'-trailer cleavage, endonucleolytic term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Elac1 elaC ribonuclease Z 1 JBrowse link 18 69,706,522 69,723,869 RGD:13792537
tRNA 5'-end processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Thg1l tRNA-histidine guanylyltransferase 1-like JBrowse link 10 31,043,647 31,052,092 RGD:1600115
tRNA 5'-leader removal term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pop1 POP1 homolog, ribonuclease P/MRP subunit JBrowse link 7 73,270,403 73,298,209 RGD:1624291
G Pop4 POP4 homolog, ribonuclease P/MRP subunit JBrowse link 1 94,661,127 94,669,461 RGD:1624291
RGD:1600115
G Pop5 POP5 homolog, ribonuclease P/MRP subunit JBrowse link 12 47,138,346 47,143,152 RGD:1624291
G Pop7 POP7 homolog, ribonuclease P/MRP subunit JBrowse link 12 22,259,713 22,260,754 RGD:1624291
G Prorp protein only RNase P catalytic subunit JBrowse link 6 76,079,880 76,171,298 RGD:13792537
G Rpp14 ribonuclease P/MRP subunit p14 JBrowse link 15 18,625,963 18,636,157 RGD:1624291
G Rpp21 ribonuclease P/MRP subunit p21 JBrowse link 20 2,515,541 2,517,471 RGD:1624291
G Rpp25 ribonuclease P and MRP subunit p25 JBrowse link 8 62,283,336 62,284,716 RGD:1624291
RGD:13792537
RGD:1600115
G Rpp25l ribonuclease P/MRP subunit p25 like JBrowse link 5 58,096,037 58,097,577 RGD:13792537
G Rpp30 ribonuclease P/MRP subunit p30 JBrowse link 1 254,697,247 254,720,093 RGD:1624291
G Rpp38 ribonuclease P/MRP subunit p38 JBrowse link 17 78,915,450 78,919,144 RGD:1624291
RGD:13792537
G Rpp40 ribonuclease P/MRP subunit p40 JBrowse link 17 29,638,647 29,647,709 RGD:1624291
RGD:13792537
RGD:1600115
G Ssb small RNA binding exonuclease protection factor La JBrowse link 3 56,092,425 56,102,008 RGD:1624291
tRNA acetylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nat10 N-acetyltransferase 10 JBrowse link 3 93,658,119 93,698,136 RGD:1600115
tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dars2 aspartyl-tRNA synthetase 2 (mitochondrial) JBrowse link 13 78,857,638 78,885,464 RGD:1624291
G Yars2 tyrosyl-tRNA synthetase 2 JBrowse link 11 88,882,615 88,888,377 RGD:1624291
RGD:13792537
tRNA aminoacylation for mitochondrial protein translation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ears2 glutamyl-tRNA synthetase 2, mitochondrial JBrowse link 1 191,997,512 192,025,350 RGD:1624291
tRNA aminoacylation for protein translation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gars glycyl-tRNA synthetase JBrowse link 4 85,235,122 85,276,085 RGD:1624291
RGD:1600115
G LOC317588 hypothetical protein LOC317588 JBrowse link X 137,934,296 137,952,151 RGD:1600115
G Mars1 methionyl-tRNA synthetase 1 JBrowse link 7 70,585,011 70,602,425 RGD:13792537
G Nars2 asparaginyl-tRNA synthetase 2, mitochondrial JBrowse link 1 161,922,132 162,035,817 RGD:1600115
G Tars1 threonyl-tRNA synthetase 1 JBrowse link 2 61,394,632 61,414,115 RGD:13792537
G Tars2 threonyl-tRNA synthetase 2, mitochondrial JBrowse link 2 197,861,071 197,881,347 RGD:13792537
G Tars3 threonyl-tRNA synthetase 3 JBrowse link 1 126,523,169 126,559,493 RGD:13792537
G Vars1 valyl-tRNA synthetase 1 JBrowse link 20 4,993,539 5,008,259 RGD:13792537
G Vars2 valyl-tRNA synthetase 2, mitochondrial JBrowse link 20 3,588,462 3,599,514 RGD:13792537
tRNA C5-cytosine methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nsun6 NOP2/Sun RNA methyltransferase 6 JBrowse link 17 82,020,316 82,060,533 RGD:1624291
tRNA catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pop1 POP1 homolog, ribonuclease P/MRP subunit JBrowse link 7 73,270,403 73,298,209 RGD:1624291
G Slfn13 schlafen family member 13 JBrowse link 10 70,326,157 70,343,024 RGD:13601999
tRNA demethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Alkbh1 alkB homolog 1, histone H2A dioxygenase JBrowse link 6 111,456,096 111,476,829 RGD:1624291
tRNA dihydrouridine synthesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dus1l dihydrouridine synthase 1-like JBrowse link 10 109,972,018 109,979,113 RGD:1600115
G Dus2 dihydrouridine synthase 2 JBrowse link 19 37,990,374 38,033,590 RGD:1624291
RGD:13792537
G Dus3l dihydrouridine synthase 3-like JBrowse link 9 10,289,440 10,294,213 RGD:1600115
G Dus4l dihydrouridine synthase 4-like JBrowse link 6 50,925,987 50,943,546 RGD:1600115
tRNA exon ligation utilizing 2',3' cyclic phosphate of 5'-exon as source of linkage phosphate term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rtcb RNA 2',3'-cyclic phosphate and 5'-OH ligase JBrowse link 7 23,913,830 23,933,191 RGD:13792537
tRNA methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Alkbh8 alkB homolog 8, tRNA methyltransferase JBrowse link 6 18,877,885 18,952,773 RGD:1624291
G Bcdin3d BCDIN3 domain containing RNA methyltransferase JBrowse link 7 141,132,106 141,136,700 RGD:1600115
RGD:1624291
G Ftsj1 FtsJ RNA 2'-O-methyltransferase 1 JBrowse link X 14,993,685 15,006,010 RGD:13792537
G Gtpbp3 GTP binding protein 3 JBrowse link 16 19,897,135 19,902,226 RGD:13792537
G Lcmt2 leucine carboxyl methyltransferase 2 JBrowse link 3 113,089,646 113,091,770 RGD:13792537
G LOC103692719 tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A JBrowse link 6 136,244,466 136,250,496 RGD:13792537
G Mettl1 methyltransferase like 1 JBrowse link 7 70,328,470 70,333,045 RGD:13792537
G Mettl2 methyltransferase like 2 JBrowse link 10 93,353,944 93,367,769 RGD:1624291
G Mettl6 methyltransferase like 6 JBrowse link 16 7,559,964 7,588,841 RGD:1624291
G Mto1 mitochondrial tRNA translation optimization 1 JBrowse link 8 85,807,703 85,832,263 RGD:13792537
G Nsun2 NOP2/Sun RNA methyltransferase 2 JBrowse link 1 36,295,650 36,319,906 RGD:1624291
RGD:13792537
G Nsun6 NOP2/Sun RNA methyltransferase 6 JBrowse link 17 82,020,316 82,060,533 RGD:1624291
G Tarbp1 TAR (HIV-1) RNA binding protein 1 JBrowse link 19 59,331,399 59,384,807 RGD:13792537
G Thada THADA, armadillo repeat containing JBrowse link 6 7,423,555 7,741,431 RGD:13792537
G Thumpd2 THUMP domain containing 2 JBrowse link 6 3,743,080 3,794,512 RGD:13792537
G Thumpd3 THUMP domain containing 3 JBrowse link 4 144,985,850 145,010,164 RGD:13792537
G Trdmt1 tRNA aspartic acid methyltransferase 1 JBrowse link 17 80,824,652 80,859,585 RGD:1624291
RGD:1600115
G Trmo tRNA methyltransferase O JBrowse link 5 61,992,507 62,001,065 RGD:1624291
RGD:1600115
G Trmt10a tRNA methyltransferase 10A JBrowse link 2 243,422,811 243,437,533 RGD:1600115
RGD:1624291
G Trmt10b tRNA methyltransferase 10B JBrowse link 5 60,841,517 60,866,480 RGD:1600115
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit JBrowse link 11 47,047,342 47,052,420 RGD:1600115
G Trmt11 tRNA methyltransferase 11 homolog JBrowse link 1 29,432,109 29,576,079 RGD:1600115
G Trmt112 tRNA methyltransferase subunit 11-2 JBrowse link 1 222,167,927 222,168,780 RGD:13792537
G Trmt12 tRNA methyltransferase 12 JBrowse link 7 98,748,547 98,750,173 RGD:13792537
G Trmt13 tRNA methyltransferase 13 homolog JBrowse link 2 219,615,665 219,628,824 RGD:13792537
G Trmt44 tRNA methyltransferase 44 JBrowse link 14 80,361,490 80,379,408 RGD:13792537
G Trmt5 tRNA methyltransferase 5 JBrowse link 6 96,164,579 96,171,680 RGD:13792537
G Trmt6 tRNA methyltransferase 6 JBrowse link 3 125,458,692 125,470,413 RGD:1600115
G Trmt61a tRNA methyltransferase 61A JBrowse link 6 136,150,768 136,156,785 RGD:13792537
G Trmt9b tRNA methyltransferase 9B (putative) JBrowse link 16 59,316,145 59,368,559 RGD:1600115
G Tyw3 tRNA-yW synthesizing protein 3 homolog JBrowse link 2 260,861,825 260,884,270 RGD:13792537
tRNA methylthiolation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdk5rap1 CDK5 regulatory subunit associated protein 1 JBrowse link 3 149,835,953 149,870,429 RGD:1600115
G Cdkal1 CDK5 regulatory subunit associated protein 1-like 1 JBrowse link 17 36,451,031 37,157,882 RGD:1624291
tRNA modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07005588.1 RGD:1600115
G AABR07005618.1 RGD:13792537
G Aars alanyl-tRNA synthetase JBrowse link 19 43,193,264 43,215,281 RGD:1600115
RGD:13792537
RGD:1624291
G Aars2 alanyl-tRNA synthetase 2, mitochondrial JBrowse link 9 17,869,301 17,881,762 RGD:13792537
G Ankrd16 ankyrin repeat domain 16 JBrowse link 17 70,384,883 70,398,089 RGD:1600115
RGD:1624291
G Dtwd1 DTW domain containing 1 JBrowse link 3 118,427,790 118,443,003 RGD:1600115
RGD:1624291
G Dtwd2 DTW domain containing 2 JBrowse link 18 43,857,371 43,945,732 RGD:1624291
G Mettl1 methyltransferase like 1 JBrowse link 7 70,328,470 70,333,045 RGD:1624291
G Qtrt1 queuine tRNA-ribosyltransferase catalytic subunit 1 JBrowse link 8 22,447,057 22,454,328 RGD:13792537
G RGD1311345 similar to CG9752-PA JBrowse link 17 6,683,152 6,690,724 RGD:13792537
G Thg1l tRNA-histidine guanylyltransferase 1-like JBrowse link 10 31,043,647 31,052,092 RGD:1600115
G Trit1 tRNA isopentenyltransferase 1 JBrowse link 5 140,711,943 140,756,893 RGD:13792537
G Trub1 TruB pseudouridine synthase family member 1 JBrowse link 1 278,311,362 278,418,347 RGD:13792537
G Wdr4 WD repeat domain 4 JBrowse link 20 10,240,571 10,264,818 RGD:1624291
tRNA N1-guanine methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Trmt5 tRNA methyltransferase 5 JBrowse link 6 96,164,579 96,171,680 RGD:13792537
tRNA N2-guanine methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Trmt1 tRNA methyltransferase 1 JBrowse link 19 25,798,262 25,813,458 RGD:13792537
G Trmt1l tRNA methyltransferase 1-like JBrowse link 13 68,785,889 68,819,018 RGD:13792537
tRNA nucleoside ribose methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ftsj1 FtsJ RNA 2'-O-methyltransferase 1 JBrowse link X 14,993,685 15,006,010 RGD:1600115
tRNA processing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adat1 adenosine deaminase, tRNA-specific 1 JBrowse link 19 44,172,496 44,212,147 RGD:1624291
G Fars2 phenylalanyl-tRNA synthetase 2, mitochondrial JBrowse link 17 29,006,981 29,438,906 RGD:1624291
RGD:1600115
G Pop1 POP1 homolog, ribonuclease P/MRP subunit JBrowse link 7 73,270,403 73,298,209 RGD:13792537
G Pop5 POP5 homolog, ribonuclease P/MRP subunit JBrowse link 12 47,138,346 47,143,152 RGD:1624291
RGD:13792537
G Pop7 POP7 homolog, ribonuclease P/MRP subunit JBrowse link 12 22,259,713 22,260,754 RGD:13792537
G Rpp21 ribonuclease P/MRP subunit p21 JBrowse link 20 2,515,541 2,517,471 RGD:13792537
G Rpp30 ribonuclease P/MRP subunit p30 JBrowse link 1 254,697,247 254,720,093 RGD:13792537
G Rpusd4 RNA pseudouridine synthase D4 JBrowse link 8 36,467,706 36,477,190 RGD:1600115
G Ssb small RNA binding exonuclease protection factor La JBrowse link 3 56,092,425 56,102,008 RGD:737671
RGD:1624291
G Thg1l tRNA-histidine guanylyltransferase 1-like JBrowse link 10 31,043,647 31,052,092 RGD:1624291
RGD:13792537
RGD:1600115
G Trmu tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase JBrowse link 7 126,756,140 126,772,749 RGD:1600115
G Trpt1 tRNA phosphotransferase 1 JBrowse link 1 222,250,995 222,255,994 RGD:13792537
G Trub2 TruB pseudouridine synthase family member 2 JBrowse link 3 8,338,479 8,348,746 RGD:1600115
tRNA pseudouridine synthesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pus1 pseudouridine synthase 1 JBrowse link 12 51,936,721 51,945,930 RGD:1624291
RGD:13792537
G Pus10 pseudouridine synthase 10 JBrowse link 14 108,411,941 108,479,696 RGD:13792537
RGD:1624291
G Pus3 pseudouridine synthase 3 JBrowse link 8 36,760,874 36,769,167 RGD:1624291
RGD:13792537
G Pus7 pseudouridine synthase 7 JBrowse link 4 7,889,727 7,931,357 RGD:1624291
G Pusl1 pseudouridine synthase like 1 JBrowse link 5 173,326,755 173,339,934 RGD:13792537
tRNA splicing, via endonucleolytic cleavage and ligation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Clp1 cleavage factor polyribonucleotide kinase subunit 1 JBrowse link 3 72,125,269 72,137,122 RGD:1600115
RGD:13792537
RGD:1624291
G Ddx1 DEAD-box helicase 1 JBrowse link 6 38,422,892 38,453,762 RGD:1624291
RGD:1600115
G Rtcb RNA 2',3'-cyclic phosphate and 5'-OH ligase JBrowse link 7 23,913,830 23,933,191 RGD:1600115
RGD:13792537
RGD:1624291
G Rtraf RNA transcription, translation and transport factor JBrowse link 15 4,882,925 4,893,890 RGD:1624291
G Trpt1 tRNA phosphotransferase 1 JBrowse link 1 222,250,995 222,255,994 RGD:1624291
RGD:13792537
G Tsen15 tRNA splicing endonuclease subunit 15 JBrowse link 13 69,765,093 69,781,019 RGD:1600115
G Tsen2 tRNA splicing endonuclease subunit 2 JBrowse link 4 147,455,506 147,490,869 RGD:1624291
G Tsen54 tRNA splicing endonuclease subunit 54 JBrowse link 10 104,358,401 104,366,926 RGD:1624291
G Zbtb8os zinc finger and BTB domain containing 8 opposite strand JBrowse link 5 147,535,584 147,547,252 RGD:1624291
RGD:13792537
tRNA stabilization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nsun2 NOP2/Sun RNA methyltransferase 2 JBrowse link 1 36,295,650 36,319,906 RGD:1624291
G Trdmt1 tRNA aspartic acid methyltransferase 1 JBrowse link 17 80,824,652 80,859,585 RGD:1600115
RGD:1624291
tRNA thio-modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ctu1 cytosolic thiouridylase subunit 1 JBrowse link 1 99,599,608 99,605,412 RGD:1600115
G Ctu2 cytosolic thiouridylase subunit 2 JBrowse link 19 55,300,531 55,305,543 RGD:1600115
G Mocs3 molybdenum cofactor synthesis 3 JBrowse link 3 164,986,421 164,988,381 RGD:1624291
G Urm1 ubiquitin related modifier 1 JBrowse link 3 8,389,024 8,405,868 RGD:1624291
tRNA threonylcarbamoyladenosine modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Osgep O-sialoglycoprotein endopeptidase JBrowse link 15 27,842,447 27,849,866 RGD:1600115
RGD:1624291
G Osgepl1 O-sialoglycoprotein endopeptidase-like 1 JBrowse link 9 53,084,042 53,098,029 RGD:1600115
G Tprkb Tp53rk binding protein JBrowse link 4 117,589,527 117,604,481 RGD:1600115
RGD:1624291
tRNA wobble adenosine to inosine editing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adat2 adenosine deaminase, tRNA-specific 2 JBrowse link 1 7,726,447 7,743,112 RGD:13792537
G Adat3 adenosine deaminase, tRNA-specific 3 JBrowse link 7 11,977,285 11,981,814 RGD:13792537
tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Elp1 elongator complex protein 1 JBrowse link 5 73,503,406 73,552,798 RGD:13792537
G Elp3 elongator acetyltransferase complex subunit 3 JBrowse link 15 48,942,866 49,005,074 RGD:13792537
tRNA wobble base cytosine methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nsun3 NOP2/Sun RNA methyltransferase 3 JBrowse link 11 38,535,971 38,590,274 RGD:1624291
tRNA wobble cytosine modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Alkbh1 alkB homolog 1, histone H2A dioxygenase JBrowse link 6 111,456,096 111,476,829 RGD:1624291
tRNA wobble position uridine thiolation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ctu1 cytosolic thiouridylase subunit 1 JBrowse link 1 99,599,608 99,605,412 RGD:13792537
G Ctu2 cytosolic thiouridylase subunit 2 JBrowse link 19 55,300,531 55,305,543 RGD:13792537
G Mocs3 molybdenum cofactor synthesis 3 JBrowse link 3 164,986,421 164,988,381 RGD:13792537
G Trmu tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase JBrowse link 7 126,756,140 126,772,749 RGD:13792537
G Urm1 ubiquitin related modifier 1 JBrowse link 3 8,389,024 8,405,868 RGD:13792537
tRNA wobble uridine modification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07053185.1 RGD:1600115
G Alkbh8 alkB homolog 8, tRNA methyltransferase JBrowse link 6 18,877,885 18,952,773 RGD:1624291
G Ctu1 cytosolic thiouridylase subunit 1 JBrowse link 1 99,599,608 99,605,412 RGD:1600115
G Ctu2 cytosolic thiouridylase subunit 2 JBrowse link 19 55,300,531 55,305,543 RGD:1600115
G Dph3 diphthamide biosynthesis 3 JBrowse link 16 8,202,048 8,207,492 RGD:13792537
G Elp1 elongator complex protein 1 JBrowse link 5 73,503,406 73,552,798 RGD:1600115
G Elp2 elongator acetyltransferase complex subunit 2 JBrowse link 18 16,544,515 16,581,086 RGD:1600115
G Elp5 elongator acetyltransferase complex subunit 5 JBrowse link 10 56,578,980 56,590,706 RGD:1600115
G Elp6 elongator acetyltransferase complex subunit 6 JBrowse link 8 118,525,770 118,541,074 RGD:1600115
G Gtpbp3 GTP binding protein 3 JBrowse link 16 19,897,135 19,902,226 RGD:13792537
G Kti12 KTI12 chromatin associated homolog JBrowse link 5 128,464,035 128,465,557 RGD:13792537
G LOC365839 similar to elongation protein 4 homolog JBrowse link 2 186,630,203 186,631,703 RGD:1600115
G Mocs3 molybdenum cofactor synthesis 3 JBrowse link 3 164,986,421 164,988,381 RGD:1624291
G Mto1 mitochondrial tRNA translation optimization 1 JBrowse link 8 85,807,703 85,832,263 RGD:1624291
RGD:13792537
G Trmt9b tRNA methyltransferase 9B (putative) JBrowse link 16 59,316,145 59,368,559 RGD:13792537
G Urm1 ubiquitin related modifier 1 JBrowse link 3 8,389,024 8,405,868 RGD:1624291
tRNA-guanine transglycosylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Qtrt1 queuine tRNA-ribosyltransferase catalytic subunit 1 JBrowse link 8 22,447,057 22,454,328 RGD:1624291
RGD:1600115
G Qtrt2 queuine tRNA-ribosyltransferase accessory subunit 2 JBrowse link 11 61,748,822 61,779,631 RGD:1624291
RGD:13792537
G RGD1311345 similar to CG9752-PA JBrowse link 17 6,683,152 6,690,724 RGD:13792537
tRNA-type intron splice site recognition and cleavage term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tsen2 tRNA splicing endonuclease subunit 2 JBrowse link 4 147,455,506 147,490,869 RGD:13792537
G Tsen34 tRNA splicing endonuclease subunit 34 JBrowse link 1 64,023,924 64,031,756 RGD:13792537
G Tsen34l1 tRNA splicing endonuclease subunit 34-like 1 JBrowse link 1 64,092,224 64,100,061 RGD:13792537
G Tsen54 tRNA splicing endonuclease subunit 54 JBrowse link 10 104,358,401 104,366,926 RGD:13792537
tryptophanyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Wars1 tryptophanyl-tRNA synthetase 1 JBrowse link 6 132,771,026 132,802,262 RGD:1600115
RGD:13792537
RGD:1624291
G Wars2 tryptophanyl tRNA synthetase 2 (mitochondrial) JBrowse link 2 201,170,363 201,256,115 RGD:13792537
tyrosyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Yars1 tyrosyl-tRNA synthetase 1 JBrowse link 5 147,375,350 147,403,578 RGD:1600115
valyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Vars1 valyl-tRNA synthetase 1 JBrowse link 20 4,993,539 5,008,259 RGD:13792537
G Vars2 valyl-tRNA synthetase 2, mitochondrial JBrowse link 20 3,588,462 3,599,514 RGD:1600115
RGD:13792537
wybutosine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lcmt2 leucine carboxyl methyltransferase 2 JBrowse link 3 113,089,646 113,091,770 RGD:13792537
G Trmt12 tRNA methyltransferase 12 JBrowse link 7 98,748,547 98,750,173 RGD:13792537
G Tyw1 tRNA-yW synthesizing protein 1 homolog JBrowse link 12 29,824,990 29,919,240 RGD:13792537
G Tyw3 tRNA-yW synthesizing protein 3 homolog JBrowse link 2 260,861,825 260,884,270 RGD:13792537
G Tyw5 tRNA-yW synthesizing protein 5 JBrowse link 9 64,077,841 64,096,265 RGD:1624291
RGD:13792537

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19578
    metabolic process 11901
      organic substance metabolic process 11299
        macromolecule metabolic process 9767
          nucleic acid metabolic process 4782
            RNA metabolic process 4290
              ncRNA metabolic process 489
                tRNA metabolic process 173
                  aminoacyl-tRNA metabolism involved in translational fidelity 14
                  negative regulation of tRNA metabolic process + 2
                  positive regulation of tRNA metabolic process + 0
                  regulation of tRNA metabolic process + 2
                  selenocysteinyl-tRNA(Sec) biosynthetic process 2
                  tRNA aminoacylation + 48
                  tRNA catabolic process + 10
                  tRNA end turnover 0
                  tRNA processing + 117
Path 2
Term Annotations click to browse term
  biological_process 19578
    metabolic process 11901
      cellular metabolic process 10737
        cellular aromatic compound metabolic process 5503
          nucleobase-containing compound metabolic process 5276
            nucleic acid metabolic process 4782
              RNA metabolic process 4290
                ncRNA metabolic process 489
                  tRNA metabolic process 173
                    aminoacyl-tRNA metabolism involved in translational fidelity 14
                    negative regulation of tRNA metabolic process + 2
                    positive regulation of tRNA metabolic process + 0
                    regulation of tRNA metabolic process + 2
                    selenocysteinyl-tRNA(Sec) biosynthetic process 2
                    tRNA aminoacylation + 48
                    tRNA catabolic process + 10
                    tRNA end turnover 0
                    tRNA processing + 117
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.