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ONTOLOGY REPORT - ANNOTATIONS


Term:mRNA catabolic process
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Accession:GO:0006402 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes.
Synonyms:exact_synonym: mRNA breakdown;   mRNA catabolism;   mRNA degradation
 related_synonym: mRNA decay


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mRNA catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AC118772.1 RGD:13792537
G Ago3 argonaute RISC catalytic component 3 JBrowse link 5 144,355,792 144,436,509 RGD:1624291
G Ago4 argonaute RISC component 4 JBrowse link 5 144,501,875 144,557,165 RGD:1624291
G Cnot10 CCR4-NOT transcription complex, subunit 10 JBrowse link 8 122,634,681 122,696,466 RGD:13792537
G Cnot9 CCR4-NOT transcription complex subunit 9 JBrowse link 9 81,783,349 81,808,815 RGD:1600115
G Dcp2 decapping mRNA 2 JBrowse link 18 35,489,274 35,671,676 RGD:1624291
G Dis3l2 DIS3-like 3'-5' exoribonuclease 2 JBrowse link 9 93,767,837 94,161,106 RGD:13792537
G Dxo decapping exoribonuclease JBrowse link 20 4,517,307 4,519,391 RGD:1600115
RGD:1624291
G Hspa1a heat shock protein family A (Hsp70) member 1A JBrowse link 20 4,875,834 4,881,751 RGD:1624291
RGD:1600115
G Hspa1b heat shock protein family A (Hsp70) member 1B JBrowse link 20 4,877,638 4,880,112 RGD:1624291
RGD:1600115
G Khsrp KH-type splicing regulatory protein JBrowse link 9 10,013,795 10,023,670 RGD:1624291
RGD:1600115
G LOC108348108 heat shock 70 kDa protein 1A JBrowse link 20 2,699,707 2,701,856 RGD:1600115
G LOC688828 similar to Nucleoside diphosphate-linked moiety X motif 16 (Nudix motif 16) JBrowse link 8 113,687,983 113,689,657 RGD:13792537
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 20 4,966,817 4,970,567 RGD:1624291
G Lsm5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 4 87,016,003 87,019,219 RGD:1624291
G Lsm6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 19 32,770,640 32,785,215 RGD:1624291
G Mettl14 methyltransferase like 14 JBrowse link 2 227,566,811 227,583,047 RGD:1624291
G Mettl16 methyltransferase like 16 JBrowse link 10 61,626,595 61,682,947 RGD:1624291
RGD:1600115
G Mettl3 methyltransferase-like 3 JBrowse link 15 28,710,299 28,721,491 RGD:1624291
G Mirlet7b microRNA let-7b JBrowse link 7 126,590,627 126,590,711 RGD:1624291
G Mirlet7c1 microRNA let-7c-1 JBrowse link 11 16,052,873 16,052,966 RGD:1624291
G Mirlet7c2 microRNA let-7c-2 JBrowse link 7 126,590,212 126,590,306 RGD:1624291
G Nanos2 nanos C2HC-type zinc finger 2 JBrowse link 1 79,894,450 79,895,910 RGD:1624291
G Nudt12 nudix hydrolase 12 JBrowse link 9 105,680,603 105,693,374 RGD:1600115
RGD:1624291
G Nudt16 nudix hydrolase 16 JBrowse link 8 113,673,069 113,675,124 RGD:1624291
RGD:13792537
G Nudt16l1 nudix hydrolase 16 like 1 JBrowse link 10 10,829,866 10,831,782 RGD:13792537
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 JBrowse link 14 113,530,470 113,561,645 RGD:1624291
G Rida reactive intermediate imine deaminase A homolog JBrowse link 7 73,256,506 73,270,308 RGD:1600115
RGD:1624291
G Slfn14 schlafen family member 14 JBrowse link 10 70,493,340 70,504,810 RGD:1624291
G Ythdf2 YTH N(6)-methyladenosine RNA binding protein 2 JBrowse link 5 150,364,490 150,390,173 RGD:1624291
G Zc3h12d zinc finger CCCH type containing 12D JBrowse link 1 1,937,620 1,972,919 RGD:1624291
G Zfp36 zinc finger protein 36 JBrowse link 1 85,380,088 85,382,565 RGD:1600115
RGD:1624291
G Zfp36l1 zinc finger protein 36, C3H type-like 1 JBrowse link 6 103,308,032 103,313,074 RGD:1580602
G Zfp36l2 zinc finger protein 36, C3H type-like 2 JBrowse link 6 7,417,416 7,423,447 RGD:1624291
G Zhx2 zinc fingers and homeoboxes 2 JBrowse link 7 97,559,653 97,707,872 RGD:1624291
3'-UTR-mediated mRNA destabilization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cpeb3 cytoplasmic polyadenylation element binding protein 3 JBrowse link 1 255,660,165 255,842,671 RGD:1624291
G Dhx36 DEAH-box helicase 36 JBrowse link 2 152,785,844 152,824,549 RGD:1600115
RGD:1624291
G Dnd1 DND microRNA-mediated repression inhibitor 1 JBrowse link 18 29,608,588 29,611,212 RGD:1600115
RGD:1624291
G Hnrnpd heterogeneous nuclear ribonucleoprotein D JBrowse link 14 11,256,163 11,274,684 RGD:10042974
G Khsrp KH-type splicing regulatory protein JBrowse link 9 10,013,795 10,023,670 RGD:1600115
RGD:1624291
G Mov10 Mov10 RISC complex RNA helicase JBrowse link 2 207,277,088 207,301,245 RGD:1624291
G Plekhn1 pleckstrin homology domain containing N1 JBrowse link 5 173,646,055 173,654,140 RGD:1624291
G Qk quaking JBrowse link 1 50,983,647 51,050,692 RGD:1624291
G Rbm24 RNA binding motif protein 24 JBrowse link 17 18,671,037 18,682,876 RGD:1624291
G Rc3h1 ring finger and CCCH-type domains 1 JBrowse link 13 78,723,028 78,794,663 RGD:1624291
G Tardbp TAR DNA binding protein JBrowse link 5 165,432,089 165,442,232 RGD:1600115
RGD:1624291
G Trim71 tripartite motif containing 71 JBrowse link 8 122,553,015 122,604,787 RGD:1624291
G Upf1 UPF1, RNA helicase and ATPase JBrowse link 16 20,824,888 20,845,632 RGD:1624291
G Zc3h12a zinc finger CCCH type containing 12A JBrowse link 5 143,111,342 143,120,131 RGD:1624291
RGD:1600115
G Zc3h12d zinc finger CCCH type containing 12D JBrowse link 1 1,937,620 1,972,919 RGD:1624291
G Zfp36 zinc finger protein 36 JBrowse link 1 85,380,088 85,382,565 RGD:1600115
RGD:1624291
G Zfp36l1 zinc finger protein 36, C3H type-like 1 JBrowse link 6 103,308,032 103,313,074 RGD:1600115
RGD:1624291
G Zfp36l2 zinc finger protein 36, C3H type-like 2 JBrowse link 6 7,417,416 7,423,447 RGD:1624291
3'-UTR-mediated mRNA stabilization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Angel2 angel homolog 2 JBrowse link 13 109,505,021 109,520,976 RGD:1624291
RGD:13792537
G Boll boule homolog, RNA binding protein JBrowse link 9 61,836,517 61,975,640 RGD:13792537
G Dazl deleted in azoospermia-like JBrowse link 9 12,633,983 12,651,017 RGD:13792537
G Elavl1 ELAV like RNA binding protein 1 JBrowse link 12 2,461,502 2,502,432 RGD:1600115
RGD:1624291
G Hnrnpa0 heterogeneous nuclear ribonucleoprotein A0 RGD:1624291
G Hnrnpc heterogeneous nuclear ribonucleoprotein C JBrowse link 15 28,486,605 28,517,353 RGD:1624291
G LOC108348134 protein boule-like JBrowse link 9 64,447,890 64,573,812 RGD:13792537
G LOC681410 hypothetical protein LOC681410 JBrowse link 17 6,909,166 6,912,145 RGD:1600115
G Mapkapk2 MAPK activated protein kinase 2 JBrowse link 13 47,785,157 47,871,684 RGD:1624291
G Myd88 MYD88, innate immune signal transduction adaptor JBrowse link 8 128,022,512 128,027,462 RGD:1624291
G Ptbp1 polypyrimidine tract binding protein 1 JBrowse link 7 12,663,965 12,673,723 RGD:10045987
G Rbm10 RNA binding motif protein 10 JBrowse link X 1,754,869 1,786,973 RGD:1624291
RGD:1600115
G Rbm24 RNA binding motif protein 24 JBrowse link 17 18,671,037 18,682,876 RGD:13792537
G Rbm38 RNA binding motif protein 38 JBrowse link 3 171,037,891 171,050,500 RGD:1624291
RGD:13792537
G Tardbp TAR DNA binding protein JBrowse link 5 165,432,089 165,442,232 RGD:1624291
G Tirap TIR domain containing adaptor protein JBrowse link 8 36,382,029 36,399,625 RGD:1624291
G Zfp36 zinc finger protein 36 JBrowse link 1 85,380,088 85,382,565 RGD:1624291
RGD:1600115
CRD-mediated mRNA stabilization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dhx9 DExH-box helicase 9 JBrowse link 13 70,885,503 70,922,278 RGD:1624291
G Hnrnpu heterogeneous nuclear ribonucleoprotein U JBrowse link 13 96,222,093 96,238,845 RGD:1600115
RGD:13792537
RGD:1624291
G Igf2bp1 insulin-like growth factor 2 mRNA binding protein 1 JBrowse link 10 83,774,178 83,823,323 RGD:1624291
G Syncrip synaptotagmin binding, cytoplasmic RNA interacting protein JBrowse link 8 96,100,692 96,266,342 RGD:1600115
RGD:13792537
RGD:1624291
G Ybx1 Y box binding protein 1 JBrowse link 5 138,319,754 138,336,721 RGD:1624291
RGD:1600115
deadenylation-dependent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07066144.1 RGD:13792537
G Cnot7 CCR4-NOT transcription complex, subunit 7 JBrowse link 16 54,899,452 54,918,616 RGD:1624291
G Dcp1a decapping mRNA 1A JBrowse link 16 6,542,415 6,583,856 RGD:13792537
G Dcp1b decapping mRNA 1B JBrowse link 4 151,249,654 151,287,018 RGD:13792537
G Dcp2 decapping mRNA 2 JBrowse link 18 35,489,274 35,671,676 RGD:13792537
G Dcps decapping enzyme, scavenger JBrowse link 8 36,321,992 36,374,665 RGD:1600115
RGD:13792537
G LOC100912393 mRNA-decapping enzyme 2-like JBrowse link 9 3,940,948 3,965,964 RGD:13792537
G Lsm1 LSM1 homolog, mRNA degradation associated JBrowse link 16 71,046,475 71,057,883 RGD:13792537
G Noct nocturnin JBrowse link 2 140,286,661 140,306,869 RGD:1624291
G Pan3 poly(A) specific ribonuclease subunit PAN3 JBrowse link 12 9,214,116 9,331,901 RGD:1624291
RGD:13792537
G Patl1 PAT1 homolog 1, processing body mRNA decay factor JBrowse link 1 228,337,756 228,369,719 RGD:1600115
RGD:13792537
RGD:1624291
G Patl2 PAT1 homolog 2 JBrowse link 3 114,065,814 114,075,404 RGD:13792537
deadenylation-independent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dcp1a decapping mRNA 1A JBrowse link 16 6,542,415 6,583,856 RGD:13792537
G Dcp1b decapping mRNA 1B JBrowse link 4 151,249,654 151,287,018 RGD:13792537
G Edc3 enhancer of mRNA decapping 3 JBrowse link 8 62,482,126 62,527,665 RGD:13792537
G Edc4 enhancer of mRNA decapping 4 JBrowse link 19 37,852,659 37,864,651 RGD:13792537
exonucleolytic catabolism of deadenylated mRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cnot6 CCR4-NOT transcription complex, subunit 6 JBrowse link 10 35,144,291 35,195,126 RGD:1624291
RGD:1600115
G Cnot7 CCR4-NOT transcription complex, subunit 7 JBrowse link 16 54,899,452 54,918,616 RGD:1624291
RGD:13792537
G Cnot8 CCR4-NOT transcription complex, subunit 8 JBrowse link 10 43,538,150 43,551,271 RGD:1624291
RGD:13792537
G Exosc2 exosome component 2 JBrowse link 3 10,151,734 10,161,997 RGD:13792537
G Exosc3 exosome component 3 JBrowse link 5 60,866,498 60,871,734 RGD:1624291
RGD:13792537
G Exosc5 exosome component 5 JBrowse link 1 82,452,104 82,461,607 RGD:1624291
G Exosc7 exosome component 7 JBrowse link 8 132,204,628 132,229,968 RGD:13792537
G Exosc8 exosome component 8 JBrowse link 2 143,925,643 143,932,240 RGD:13792537
G Exosc9 exosome component 9 JBrowse link 2 123,264,679 123,275,623 RGD:1624291
RGD:13792537
histone mRNA catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atm ATM serine/threonine kinase JBrowse link 8 58,015,938 58,119,973 RGD:1624291
G Dcp2 decapping mRNA 2 JBrowse link 18 35,489,274 35,671,676 RGD:1624291
G Eri1 exoribonuclease 1 JBrowse link 16 60,307,148 60,327,237 RGD:1624291
RGD:1600115
G Exosc10 exosome component 10 JBrowse link 5 165,374,964 165,398,195 RGD:1624291
RGD:13792537
G Exosc4 exosome component 4 JBrowse link 7 117,390,302 117,393,044 RGD:1624291
G Lsm1 LSM1 homolog, mRNA degradation associated JBrowse link 16 71,046,475 71,057,883 RGD:1624291
G Mtpap mitochondrial poly(A) polymerase JBrowse link 17 56,046,507 56,068,185 RGD:1624291
G Tent2 terminal nucleotidyltransferase 2 JBrowse link 2 22,746,290 22,798,252 RGD:1624291
RGD:1600115
G Tent4a terminal nucleotidyltransferase 4A JBrowse link 1 36,400,056 36,433,238 RGD:13792537
G Tent4b terminal nucleotidyltransferase 4B JBrowse link 19 19,771,289 19,834,759 RGD:1624291
RGD:13792537
G Tut1 terminal uridylyl transferase 1, U6 snRNA-specific JBrowse link 1 225,151,462 225,162,445 RGD:1624291
RGD:1600115
G Tut4 terminal uridylyl transferase 4 JBrowse link 5 128,063,880 128,168,726 RGD:1624291
G Tut7 terminal uridylyl transferase 7 JBrowse link 17 5,225,854 5,279,674 RGD:1624291
G Upf1 UPF1, RNA helicase and ATPase JBrowse link 16 20,824,888 20,845,632 RGD:1624291
G Xrn1 5'-3' exoribonuclease 1 JBrowse link 8 103,774,125 103,883,563 RGD:1624291
mitochondrial mRNA catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pde12 phosphodiesterase 12 JBrowse link 16 2,357,028 2,367,069 RGD:1600115
RGD:1624291
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 JBrowse link 14 113,530,470 113,561,645 RGD:1624291
RGD:13792537
G Supv3l1 Suv3 like RNA helicase JBrowse link 20 32,057,530 32,080,170 RGD:1600115
RGD:1624291
mRNA destabilization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cnot6l CCR4-NOT transcription complex, subunit 6-like JBrowse link 14 15,059,101 15,148,255 RGD:1624291
G Fto FTO, alpha-ketoglutarate dependent dioxygenase JBrowse link 19 16,774,549 17,115,098 RGD:1600115
RGD:1624291
G Gigyf2 GRB10 interacting GYF protein 2 JBrowse link 9 94,425,191 94,550,431 RGD:1624291
G Hnrnpr heterogeneous nuclear ribonucleoprotein R JBrowse link 5 154,668,194 154,699,967 RGD:9854643
G Mettl14 methyltransferase like 14 JBrowse link 2 227,566,811 227,583,047 RGD:1624291
G Mettl16 methyltransferase like 16 JBrowse link 10 61,626,595 61,682,947 RGD:1624291
RGD:1600115
G Mettl3 methyltransferase-like 3 JBrowse link 15 28,710,299 28,721,491 RGD:1624291
G Pum1 pumilio RNA-binding family member 1 JBrowse link 5 148,781,239 148,911,776 RGD:1624291
G Rbm24 RNA binding motif protein 24 JBrowse link 17 18,671,037 18,682,876 RGD:1624291
G Rida reactive intermediate imine deaminase A homolog JBrowse link 7 73,256,506 73,270,308 RGD:1600115
RGD:1624291
G Rock1 Rho-associated coiled-coil containing protein kinase 1 JBrowse link 18 1,273,490 1,390,790 RGD:1600115
RGD:1624291
G Rock2 Rho-associated coiled-coil containing protein kinase 2 JBrowse link 6 42,180,864 42,289,910 RGD:1624291
G Ythdf2 YTH N(6)-methyladenosine RNA binding protein 2 JBrowse link 5 150,364,490 150,390,173 RGD:1624291
G Ythdf3 YTH N(6)-methyladenosine RNA binding protein 3 JBrowse link 2 100,677,388 100,711,365 RGD:1624291
mRNA stabilization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 JBrowse link 4 155,386,367 155,414,034 RGD:1624291
G Axin2 axin 2 JBrowse link 10 97,212,483 97,238,824 RGD:1624291
RGD:1600115
G Cirbp cold inducible RNA binding protein JBrowse link 7 12,400,066 12,405,054 RGD:1624291
RGD:1600115
G Dicer1 dicer 1 ribonuclease III JBrowse link 6 128,388,084 128,453,234 RGD:1624291
G Dnd1 DND microRNA-mediated repression inhibitor 1 JBrowse link 18 29,608,588 29,611,212 RGD:13792537
G E2f1 E2F transcription factor 1 JBrowse link 3 150,062,895 150,073,721 RGD:1624291
G Elavl1 ELAV like RNA binding protein 1 JBrowse link 12 2,461,502 2,502,432 RGD:1624291
RGD:1600115
G Fus FUS RNA binding protein JBrowse link 1 199,412,805 199,426,705 RGD:1624291
G Gdnf glial cell derived neurotrophic factor JBrowse link 2 56,884,181 56,912,964 RGD:1624291
RGD:1600115
G Hnrnpd heterogeneous nuclear ribonucleoprotein D JBrowse link 14 11,256,163 11,274,684 RGD:1357938
G Hnrnpu heterogeneous nuclear ribonucleoprotein U JBrowse link 13 96,222,093 96,238,845 RGD:1624291
G Larp1 La ribonucleoprotein 1, translational regulator JBrowse link 10 43,435,738 43,501,186 RGD:1624291
G Mapkapk2 MAPK activated protein kinase 2 JBrowse link 13 47,785,157 47,871,684 RGD:1624291
G Meioc meiosis specific with coiled-coil domain JBrowse link 10 90,622,954 90,641,883 RGD:1624291
RGD:13792537
G Mtor mechanistic target of rapamycin kinase JBrowse link 5 165,263,813 165,373,967 RGD:10040969
G Noct nocturnin JBrowse link 2 140,286,661 140,306,869 RGD:1624291
RGD:1600115
G Qk quaking JBrowse link 1 50,983,647 51,050,692 RGD:10045995
G Rbm24 RNA binding motif protein 24 JBrowse link 17 18,671,037 18,682,876 RGD:1624291
G Rbm46 RNA binding motif protein 46 JBrowse link 2 181,828,931 181,874,223 RGD:1624291
G Slc11a1 solute carrier family 11 member 1 JBrowse link 9 81,655,590 81,666,697 RGD:1624291
RGD:1600115
G Taf15 TATA-box binding protein associated factor 15 JBrowse link 10 70,689,863 70,721,892 RGD:1624291
G Tent5c terminal nucleotidyltransferase 5C JBrowse link 2 202,797,766 202,816,562 RGD:1600115
RGD:1624291
G Thrap3 thyroid hormone receptor associated protein 3 JBrowse link 5 144,178,248 144,221,318 RGD:1624291
RGD:1600115
G Vegfa vascular endothelial growth factor A JBrowse link 9 17,340,341 17,355,681 RGD:1580563
G Vip vasoactive intestinal peptide JBrowse link 1 42,169,307 42,177,582 RGD:1600115
G Ybx1 Y box binding protein 1 JBrowse link 5 138,319,754 138,336,721 RGD:1624291
RGD:1600115
G Ybx2 Y box binding protein 2 JBrowse link 10 56,546,689 56,552,339 RGD:1624291
negative regulation of 3'-UTR-mediated mRNA stabilization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mettl16 methyltransferase like 16 JBrowse link 10 61,626,595 61,682,947 RGD:1624291
RGD:1600115
negative regulation of mRNA catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fmr1 FMRP translational regulator 1 JBrowse link X 154,684,924 154,722,369 RGD:1600115
RGD:1624291
G Pkp1 plakophilin 1 JBrowse link 13 52,705,174 52,753,089 RGD:1624291
G Pkp3 plakophilin 3 JBrowse link 1 213,884,795 213,897,783 RGD:1624291
negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dhx34 DExH-box helicase 34 JBrowse link 1 78,069,260 78,112,488 RGD:1624291
G Nbas NBAS subunit of NRZ tethering complex JBrowse link 6 38,474,773 38,777,146 RGD:1624291
G Pabpc1 poly(A) binding protein, cytoplasmic 1 JBrowse link 7 75,409,581 75,421,874 RGD:1624291
RGD:1600115
G Secisbp2 SECIS binding protein 2 JBrowse link 17 13,555,348 13,586,595 RGD:1624291
RGD:1600115
negative regulation of nuclear-transcribed mRNA poly(A) tail shortening term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tent4a terminal nucleotidyltransferase 4A JBrowse link 1 36,400,056 36,433,238 RGD:1624291
G Tent4b terminal nucleotidyltransferase 4B JBrowse link 19 19,771,289 19,834,759 RGD:1624291
G Tob1 transducer of ErbB-2.1 JBrowse link 10 81,913,689 81,915,727 RGD:1600115
RGD:1624291
nuclear histone mRNA catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ssb small RNA binding exonuclease protection factor La JBrowse link 3 56,092,425 56,102,008 RGD:1624291
nuclear mRNA surveillance term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dxo decapping exoribonuclease JBrowse link 20 4,517,307 4,519,391 RGD:1624291
RGD:1600115
G Exosc10 exosome component 10 JBrowse link 5 165,374,964 165,398,195 RGD:1624291
G Exosc4 exosome component 4 JBrowse link 7 117,390,302 117,393,044 RGD:1624291
RGD:13792537
G Exosc5 exosome component 5 JBrowse link 1 82,452,104 82,461,607 RGD:13792537
G Exosc6 exosome component 6 JBrowse link 19 43,190,879 43,193,164 RGD:13792537
G Exosc7 exosome component 7 JBrowse link 8 132,204,628 132,229,968 RGD:13792537
G Exosc8 exosome component 8 JBrowse link 2 143,925,643 143,932,240 RGD:13792537
G Exosc9 exosome component 9 JBrowse link 2 123,264,679 123,275,623 RGD:1624291
RGD:13792537
G Xrn1 5'-3' exoribonuclease 1 JBrowse link 8 103,774,125 103,883,563 RGD:1624291
nuclear polyadenylation-dependent mRNA catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Exosc7 exosome component 7 JBrowse link 8 132,204,628 132,229,968 RGD:13792537
G Exosc8 exosome component 8 JBrowse link 2 143,925,643 143,932,240 RGD:13792537
G Exosc9 exosome component 9 JBrowse link 2 123,264,679 123,275,623 RGD:13792537
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 JBrowse link 14 113,530,470 113,561,645 RGD:1624291
nuclear retention of pre-mRNA at the site of transcription term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pcid2 PCI domain containing 2 JBrowse link 16 81,757,582 81,783,047 RGD:13792537
nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Exosc2 exosome component 2 JBrowse link 3 10,151,734 10,161,997 RGD:13792537
G Exosc3 exosome component 3 JBrowse link 5 60,866,498 60,871,734 RGD:13792537
nuclear retention of unspliced pre-mRNA at the site of transcription term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Exosc10 exosome component 10 JBrowse link 5 165,374,964 165,398,195 RGD:1624291
RGD:13792537
G Prpf18 pre-mRNA processing factor 18 JBrowse link 17 77,601,914 77,632,507 RGD:13792537
nuclear-transcribed mRNA catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ago1 argonaute RISC component 1 JBrowse link 5 144,444,390 144,479,430 RGD:1624291
G Ddx5 DEAD-box helicase 5 JBrowse link 10 94,979,759 94,988,461 RGD:1624291
G Dhx34 DExH-box helicase 34 JBrowse link 1 78,069,260 78,112,488 RGD:1624291
G Exosc10 exosome component 10 JBrowse link 5 165,374,964 165,398,195 RGD:1624291
G Exosc4 exosome component 4 JBrowse link 7 117,390,302 117,393,044 RGD:1624291
G Exosc9 exosome component 9 JBrowse link 2 123,264,679 123,275,623 RGD:1624291
G Lsm3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 4 123,162,086 123,168,330 RGD:1600115
G Lsm4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 16 20,506,399 20,511,818 RGD:1600115
G Lsm7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 7 11,724,932 11,732,020 RGD:1600115
G Mrto4 MRT4 homolog, ribosome maturation factor JBrowse link 5 157,814,142 157,820,889 RGD:13792537
G Nbas NBAS subunit of NRZ tethering complex JBrowse link 6 38,474,773 38,777,146 RGD:1624291
G Ptbp1 polypyrimidine tract binding protein 1 JBrowse link 7 12,663,965 12,673,723 RGD:10045958
G Rc3h1 ring finger and CCCH-type domains 1 JBrowse link 13 78,723,028 78,794,663 RGD:1624291
G Thrap3 thyroid hormone receptor associated protein 3 JBrowse link 5 144,178,248 144,221,318 RGD:1624291
RGD:1600115
G Upf1 UPF1, RNA helicase and ATPase JBrowse link 16 20,824,888 20,845,632 RGD:1624291
G Xrn1 5'-3' exoribonuclease 1 JBrowse link 8 103,774,125 103,883,563 RGD:1624291
nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Skiv2l Ski2 like RNA helicase JBrowse link 20 4,519,457 4,530,177 RGD:13792537
nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cnot1 CCR4-NOT transcription complex, subunit 1 JBrowse link 19 9,668,186 9,761,605 RGD:13792537
G Cnot2 CCR4-NOT transcription complex, subunit 2 JBrowse link 7 59,526,105 59,617,307 RGD:13792537
G Cnot3 CCR4-NOT transcription complex, subunit 3 JBrowse link 1 64,130,823 64,147,066 RGD:13792537
G Cnot6l CCR4-NOT transcription complex, subunit 6-like JBrowse link 14 15,059,101 15,148,255 RGD:1624291
G Pde12 phosphodiesterase 12 JBrowse link 16 2,357,028 2,367,069 RGD:1600115
RGD:13792537
RGD:1624291
G Polr2d RNA polymerase II subunit D JBrowse link 18 24,570,762 24,577,894 RGD:13792537
G Rc3h1 ring finger and CCCH-type domains 1 JBrowse link 13 78,723,028 78,794,663 RGD:1624291
G Zfp36 zinc finger protein 36 JBrowse link 1 85,380,088 85,382,565 RGD:1624291
G Zfp36l1 zinc finger protein 36, C3H type-like 1 JBrowse link 6 103,308,032 103,313,074 RGD:1624291
G Zfp36l2 zinc finger protein 36, C3H type-like 2 JBrowse link 6 7,417,416 7,423,447 RGD:1624291
nuclear-transcribed mRNA catabolic process, deadenylation-independent decay term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Zfp36 zinc finger protein 36 JBrowse link 1 85,380,088 85,382,565 RGD:1624291
RGD:1600115
G Zfp36l1 zinc finger protein 36, C3H type-like 1 JBrowse link 6 103,308,032 103,313,074 RGD:11344953
nuclear-transcribed mRNA catabolic process, endonucleolytic cleavage-dependent decay term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Upf1 UPF1, RNA helicase and ATPase JBrowse link 16 20,824,888 20,845,632 RGD:1624291
G Zc3h12a zinc finger CCCH type containing 12A JBrowse link 5 143,111,342 143,120,131 RGD:1624291
nuclear-transcribed mRNA catabolic process, exonucleolytic term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dis3l2 DIS3-like 3'-5' exoribonuclease 2 JBrowse link 9 93,767,837 94,161,106 RGD:1624291
G Hnrnpd heterogeneous nuclear ribonucleoprotein D JBrowse link 14 11,256,163 11,274,684 RGD:1357938
G Polr2g RNA polymerase II subunit G JBrowse link 1 224,991,250 224,998,355 RGD:13792537
nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dis3l2 DIS3-like 3'-5' exoribonuclease 2 JBrowse link 9 93,767,837 94,161,106 RGD:1600115
G Exosc2 exosome component 2 JBrowse link 3 10,151,734 10,161,997 RGD:13792537
G Exosc3 exosome component 3 JBrowse link 5 60,866,498 60,871,734 RGD:13792537
G Exosc4 exosome component 4 JBrowse link 7 117,390,302 117,393,044 RGD:13792537
G Exosc5 exosome component 5 JBrowse link 1 82,452,104 82,461,607 RGD:13792537
G Exosc6 exosome component 6 JBrowse link 19 43,190,879 43,193,164 RGD:13792537
G Exosc7 exosome component 7 JBrowse link 8 132,204,628 132,229,968 RGD:13792537
G Exosc8 exosome component 8 JBrowse link 2 143,925,643 143,932,240 RGD:13792537
G Exosc9 exosome component 9 JBrowse link 2 123,264,679 123,275,623 RGD:13792537
nuclear-transcribed mRNA catabolic process, no-go decay term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cnot6 CCR4-NOT transcription complex, subunit 6 JBrowse link 10 35,144,291 35,195,126 RGD:1624291
RGD:1600115
G Csde1 cold shock domain containing E1 JBrowse link 2 205,525,194 205,552,987 RGD:1624291
G Gtpbp2 GTP binding protein 2 JBrowse link 9 17,198,957 17,208,456 RGD:1600115
RGD:1624291
G Pelo pelota mRNA surveillance and ribosome rescue factor JBrowse link 2 47,266,758 47,268,526 RGD:13792537
nuclear-transcribed mRNA catabolic process, non-stop decay term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pelo pelota mRNA surveillance and ribosome rescue factor JBrowse link 2 47,266,758 47,268,526 RGD:1600115
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Casc3 CASC3 exon junction complex subunit JBrowse link 10 86,724,534 86,744,485 RGD:1600115
G Ctif cap binding complex dependent translation initiation factor JBrowse link 18 71,467,381 71,701,423 RGD:1624291
G Dhx34 DExH-box helicase 34 JBrowse link 1 78,069,260 78,112,488 RGD:13792537
G Eif3e eukaryotic translation initiation factor 3 subunit E JBrowse link 7 82,997,694 83,037,231 RGD:1624291
G Eif3el1 eukaryotic translation initiation factor 3, subunit E-like 1 JBrowse link 13 100,129,757 100,162,596 RGD:1600115
G Eif4a3 eukaryotic translation initiation factor 4A3 JBrowse link 10 108,415,201 108,425,195 RGD:1624291
G Etf1 eukaryotic translation termination factor 1 JBrowse link 18 27,698,693 27,725,694 RGD:1600115
G LOC108348260 eukaryotic translation initiation factor 3 subunit E RGD:1600115
G Magoh mago homolog, exon junction complex subunit JBrowse link 5 127,480,465 127,487,617 RGD:1624291
G Magohb mago homolog B, exon junction complex subunit JBrowse link 4 165,514,584 165,522,366 RGD:1624291
G Ncbp1 nuclear cap binding protein subunit 1 JBrowse link 5 61,734,118 61,767,098 RGD:1600115
RGD:13792537
RGD:1624291
G Ncbp2 nuclear cap binding protein subunit 2 JBrowse link 11 72,071,838 72,103,087 RGD:1624291
G Pabpc1 poly(A) binding protein, cytoplasmic 1 JBrowse link 7 75,409,581 75,421,874 RGD:1600115
G Pnrc2 proline-rich nuclear receptor coactivator 2 JBrowse link 5 154,220,552 154,223,536 RGD:1624291
RGD:1600115
RGD:13792537
G Pym1 PYM homolog 1, exon junction complex associated factor JBrowse link 7 3,172,798 3,193,994 RGD:1624291
G Rbm8a RNA binding motif protein 8A JBrowse link 2 198,755,261 198,758,028 RGD:1624291
RGD:13792537
G Rnps1 RNA binding protein with serine rich domain 1 JBrowse link 10 13,786,339 13,796,720 RGD:1624291
G Smg1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase JBrowse link 1 187,781,577 187,882,833 RGD:1624291
G Smg6 SMG6 nonsense mediated mRNA decay factor JBrowse link 10
10
61,526,024
61,771,912
61,542,583
62,007,030
RGD:1624291
RGD:13792537
G Smg8 SMG8 nonsense mediated mRNA decay factor JBrowse link 10 74,379,224 74,388,838 RGD:1624291
G Smg9 SMG9 nonsense mediated mRNA decay factor JBrowse link 1 81,259,450 81,282,893 RGD:1624291
RGD:13792537
RGD:1600115
G Upf1 UPF1, RNA helicase and ATPase JBrowse link 16 20,824,888 20,845,632 RGD:1624291
RGD:13792537
G Upf2 UPF2, regulator of nonsense mediated mRNA decay JBrowse link 17 76,176,379 76,287,246 RGD:1624291
RGD:13792537
G Upf3a UPF3A, regulator of nonsense mediated mRNA decay JBrowse link 16 81,521,084 81,532,512 RGD:1624291
G Upf3b UPF3B, regulator of nonsense mediated mRNA decay JBrowse link X 123,713,327 123,731,431 RGD:1624291
RGD:13792537
nuclear-transcribed mRNA poly(A) tail shortening term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cnot6 CCR4-NOT transcription complex, subunit 6 JBrowse link 10 35,144,291 35,195,126 RGD:1624291
RGD:1600115
RGD:13792537
G Cnot6l CCR4-NOT transcription complex, subunit 6-like JBrowse link 14 15,059,101 15,148,255 RGD:13792537
G Cnot7 CCR4-NOT transcription complex, subunit 7 JBrowse link 16 54,899,452 54,918,616 RGD:1624291
G Mlh1 mutL homolog 1 JBrowse link 8 119,486,655 119,523,716 RGD:1624291
RGD:1600115
G Pan2 poly(A) specific ribonuclease subunit PAN2 JBrowse link 7 2,717,021 2,736,541 RGD:1600115
RGD:13792537
G Pan3 poly(A) specific ribonuclease subunit PAN3 JBrowse link 12 9,214,116 9,331,901 RGD:13792537
G Parn poly(A)-specific ribonuclease JBrowse link 10 1,309,724 1,461,123 RGD:1624291
RGD:13792537
G Pnldc1 PARN like, ribonuclease domain containing 1 JBrowse link 1 48,038,830 48,058,400 RGD:1624291
RGD:13792537
G Samd4a sterile alpha motif domain containing 4A JBrowse link 15 23,666,543 23,879,067 RGD:13792537
G Samd4b sterile alpha motif domain containing 4B JBrowse link 1 85,324,017 85,362,266 RGD:13792537
G Zfp36 zinc finger protein 36 JBrowse link 1 85,380,088 85,382,565 RGD:1624291
RGD:1600115
polyuridylation-dependent mRNA catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dis3l2 DIS3-like 3'-5' exoribonuclease 2 JBrowse link 9 93,767,837 94,161,106 RGD:1600115
G Tut4 terminal uridylyl transferase 4 JBrowse link 5 128,063,880 128,168,726 RGD:1624291
G Tut7 terminal uridylyl transferase 7 JBrowse link 17 5,225,854 5,279,674 RGD:1624291
positive regulation of 3'-UTR-mediated mRNA stabilization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rbm24 RNA binding motif protein 24 JBrowse link 17 18,671,037 18,682,876 RGD:1624291
G Tent4a terminal nucleotidyltransferase 4A JBrowse link 1 36,400,056 36,433,238 RGD:1624291
G Tent4b terminal nucleotidyltransferase 4B JBrowse link 19 19,771,289 19,834,759 RGD:1624291
positive regulation of deadenylation-independent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Zfp36 zinc finger protein 36 JBrowse link 1 85,380,088 85,382,565 RGD:1624291
RGD:1600115
positive regulation of mRNA catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cnot1 CCR4-NOT transcription complex, subunit 1 JBrowse link 19 9,668,186 9,761,605 RGD:1624291
G Cnot7 CCR4-NOT transcription complex, subunit 7 JBrowse link 16 54,899,452 54,918,616 RGD:1624291
G Cnot8 CCR4-NOT transcription complex, subunit 8 JBrowse link 10 43,538,150 43,551,271 RGD:1624291
G Gtpbp1 GTP binding protein 1 JBrowse link 7 120,923,274 120,947,723 RGD:8553842
G Hnrnpr heterogeneous nuclear ribonucleoprotein R JBrowse link 5 154,668,194 154,699,967 RGD:9854643
G Khsrp KH-type splicing regulatory protein JBrowse link 9 10,013,795 10,023,670 RGD:1624291
RGD:1600115
G Mov10 Mov10 RISC complex RNA helicase JBrowse link 2 207,277,088 207,301,245 RGD:1624291
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 JBrowse link 14 113,530,470 113,561,645 RGD:11554176
RGD:1624291
G Prr5l proline rich 5 like JBrowse link 3 91,290,207 91,461,208 RGD:1600115
RGD:1624291
G Rc3h1 ring finger and CCCH-type domains 1 JBrowse link 13 78,723,028 78,794,663 RGD:1624291
G Upf1 UPF1, RNA helicase and ATPase JBrowse link 16 20,824,888 20,845,632 RGD:1624291
G Zc3h12a zinc finger CCCH type containing 12A JBrowse link 5 143,111,342 143,120,131 RGD:1624291
RGD:1600115
G Zc3hav1 zinc finger CCCH-type containing, antiviral 1 JBrowse link 4 66,012,111 66,062,160 RGD:8553432
RGD:1624291
RGD:1600115
G Zfp36 zinc finger protein 36 JBrowse link 1 85,380,088 85,382,565 RGD:1624291
RGD:1600115
positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ago2 argonaute RISC catalytic component 2 JBrowse link 7 114,339,607 114,377,277 RGD:1624291
RGD:1600115
G Cnot1 CCR4-NOT transcription complex, subunit 1 JBrowse link 19 9,668,186 9,761,605 RGD:1624291
G Cnot7 CCR4-NOT transcription complex, subunit 7 JBrowse link 16 54,899,452 54,918,616 RGD:1624291
G Cpeb3 cytoplasmic polyadenylation element binding protein 3 JBrowse link 1 255,660,165 255,842,671 RGD:1624291
G Dhx36 DEAH-box helicase 36 JBrowse link 2 152,785,844 152,824,549 RGD:1624291
G Nanos1 nanos C2HC-type zinc finger 1 JBrowse link 1 282,134,676 282,140,370 RGD:1624291
G Nanos2 nanos C2HC-type zinc finger 2 JBrowse link 1 79,894,450 79,895,910 RGD:1624291
G Nanos3 nanos C2HC-type zinc finger 3 JBrowse link 19 25,284,907 25,288,680 RGD:1624291
G Pabpc1 poly(A) binding protein, cytoplasmic 1 JBrowse link 7 75,409,581 75,421,874 RGD:1624291
RGD:1600115
G Tnrc6b trinucleotide repeat containing adaptor 6B JBrowse link 7 121,930,610 122,147,934 RGD:1624291
G Tnrc6c trinucleotide repeat containing adaptor 6C JBrowse link 10 106,698,359 106,763,639 RGD:1624291
G Tob1 transducer of ErbB-2.1 JBrowse link 10 81,913,689 81,915,727 RGD:1624291
RGD:1600115
G Zfp36 zinc finger protein 36 JBrowse link 1 85,380,088 85,382,565 RGD:1624291
RGD:1600115
G Zfp36l1 zinc finger protein 36, C3H type-like 1 JBrowse link 6 103,308,032 103,313,074 RGD:11344945
G Zfp36l2 zinc finger protein 36, C3H type-like 2 JBrowse link 6 7,417,416 7,423,447 RGD:1624291
positive regulation of nuclear-transcribed mRNA poly(A) tail shortening term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ago2 argonaute RISC catalytic component 2 JBrowse link 7 114,339,607 114,377,277 RGD:1600115
RGD:1624291
G Btg2 BTG anti-proliferation factor 2 JBrowse link 13 50,913,185 50,916,944 RGD:1624291
G Cnot1 CCR4-NOT transcription complex, subunit 1 JBrowse link 19 9,668,186 9,761,605 RGD:1624291
G Cnot7 CCR4-NOT transcription complex, subunit 7 JBrowse link 16 54,899,452 54,918,616 RGD:1624291
G Cpeb3 cytoplasmic polyadenylation element binding protein 3 JBrowse link 1 255,660,165 255,842,671 RGD:1624291
G Pabpc1 poly(A) binding protein, cytoplasmic 1 JBrowse link 7 75,409,581 75,421,874 RGD:1624291
RGD:1600115
G Polr2g RNA polymerase II subunit G JBrowse link 1 224,991,250 224,998,355 RGD:13792537
G Tnrc6a trinucleotide repeat containing adaptor 6A JBrowse link 1 192,991,584 193,146,403 RGD:13792537
G Tnrc6b trinucleotide repeat containing adaptor 6B JBrowse link 7 121,930,610 122,147,934 RGD:1624291
RGD:13792537
G Tnrc6c trinucleotide repeat containing adaptor 6C JBrowse link 10 106,698,359 106,763,639 RGD:1624291
RGD:13792537
G Tob1 transducer of ErbB-2.1 JBrowse link 10 81,913,689 81,915,727 RGD:1600115
RGD:1624291
G Zfp36 zinc finger protein 36 JBrowse link 1 85,380,088 85,382,565 RGD:1600115
RGD:1624291
regulation of mitochondrial mRNA stability term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fastkd1 FAST kinase domains 1 JBrowse link 3 55,925,598 55,951,584 RGD:1624291
G Fastkd3 FAST kinase domains 3 JBrowse link 1 37,734,400 37,742,932 RGD:1624291
RGD:1600115
G Pde12 phosphodiesterase 12 JBrowse link 16 2,357,028 2,367,069 RGD:1600115
RGD:1624291
G Tbrg4 transforming growth factor beta regulator 4 JBrowse link 14 86,876,800 86,885,603 RGD:1624291
RGD:1600115
regulation of mRNA stability term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Alkbh5 alkB homolog 5, RNA demethylase JBrowse link 10 46,906,314 46,927,759 RGD:1600115
RGD:1624291
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 JBrowse link 15 27,849,943 27,852,083 RGD:1624291
RGD:1600115
G Brf1 BRF1, RNA polymerase III transcription initiation factor subunit JBrowse link 6 137,762,230 137,808,573 RGD:1624291
G Cacng7 calcium voltage-gated channel auxiliary subunit gamma 7 JBrowse link 1 64,374,547 64,405,380 RGD:13524564
G Calcr calcitonin receptor JBrowse link 4 28,627,439 28,702,559 RGD:1624291
RGD:1600115
G Carhsp1 calcium regulated heat stable protein 1 JBrowse link 10 7,041,510 7,055,107 RGD:1624291
RGD:13792537
RGD:1600115
G Csdc2 cold shock domain containing C2 JBrowse link 7 123,168,811 123,183,336 RGD:13792537
G Dcp2 decapping mRNA 2 JBrowse link 18 35,489,274 35,671,676 RGD:1624291
G Dhx36 DEAH-box helicase 36 JBrowse link 2 152,785,844 152,824,549 RGD:1600115
RGD:1624291
G Elavl4 ELAV like RNA binding protein 4 JBrowse link 5 130,001,387 130,144,557 RGD:9586719
G Fmr1 FMRP translational regulator 1 JBrowse link X 154,684,924 154,722,369 RGD:1624291
RGD:13792537
RGD:1600115
G Fxr1 FMR1 autosomal homolog 1 JBrowse link 2 120,529,716 120,570,356 RGD:13792537
G Fxr2 FMR1 autosomal homolog 2 JBrowse link 10 56,237,814 56,257,877 RGD:13792537
G Hnrnpd heterogeneous nuclear ribonucleoprotein D JBrowse link 14 11,256,163 11,274,684 RGD:1624291
G Khsrp KH-type splicing regulatory protein JBrowse link 9 10,013,795 10,023,670 RGD:1624291
RGD:1600115
G Pabpc4 poly(A) binding protein, cytoplasmic 4 JBrowse link 5 140,978,893 140,994,732 RGD:1624291
G Pcbp4 poly(rC) binding protein 4 JBrowse link 8 115,154,848 115,165,706 RGD:1624291
G Pcid2 PCI domain containing 2 JBrowse link 16 81,757,582 81,783,047 RGD:1624291
G Pum1 pumilio RNA-binding family member 1 JBrowse link 5 148,781,239 148,911,776 RGD:1624291
RGD:13792537
G Pum2 pumilio RNA-binding family member 2 JBrowse link 6 33,786,184 33,865,693 RGD:1624291
RGD:13792537
G Rbm24 RNA binding motif protein 24 JBrowse link 17 18,671,037 18,682,876 RGD:1624291
G Rc3h1 ring finger and CCCH-type domains 1 JBrowse link 13 78,723,028 78,794,663 RGD:1624291
G Rnasel ribonuclease L JBrowse link 13 71,188,712 71,202,636 RGD:1624291
G Samd4a sterile alpha motif domain containing 4A JBrowse link 15 23,666,543 23,879,067 RGD:1600115
RGD:13792537
G Samd4b sterile alpha motif domain containing 4B JBrowse link 1 85,324,017 85,362,266 RGD:13792537
G Scgb1a1 secretoglobin family 1A member 1 JBrowse link 1 225,279,698 225,283,246 RGD:1624291
G Vim vimentin JBrowse link 17 80,882,715 80,891,200 RGD:1600115
RGD:1624291
G Ythdf2 YTH N(6)-methyladenosine RNA binding protein 2 JBrowse link 5 150,364,490 150,390,173 RGD:1624291
G Zc3h14 zinc finger CCCH type containing 14 JBrowse link 6 122,729,834 122,767,462 RGD:13792537
RGD:1600115
G Zfp36 zinc finger protein 36 JBrowse link 1 85,380,088 85,382,565 RGD:1600115
RGD:1624291
G Zfp36l1 zinc finger protein 36, C3H type-like 1 JBrowse link 6 103,308,032 103,313,074 RGD:11344953
RGD:1624291
RGD:1600115
RGD:11344945
G Zfp36l2 zinc finger protein 36, C3H type-like 2 JBrowse link 6 7,417,416 7,423,447 RGD:1624291
regulation of mRNA stability involved in cellular response to UV term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Npm1 nucleophosmin 1 JBrowse link 10 18,080,949 18,091,062 RGD:1624291
regulation of mRNA stability involved in response to oxidative stress term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hnrnpm heterogeneous nuclear ribonucleoprotein M JBrowse link 7 18,516,253 18,554,536 RGD:13792537
G Myef2 myelin expression factor 2 JBrowse link 3 117,353,490 117,389,582 RGD:13792537
regulation of mRNA stability involved in response to stress term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Igf2bp1 insulin-like growth factor 2 mRNA binding protein 1 JBrowse link 10 83,774,178 83,823,323 RGD:1624291
RGD:1600115

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19439
    metabolic process 11638
      negative regulation of metabolic process 3072
        negative regulation of macromolecule metabolic process 2787
          negative regulation of gene expression 1856
            mRNA catabolic process 216
              mitochondrial mRNA catabolic process + 3
              negative regulation of mRNA catabolic process + 55
              nuclear-transcribed mRNA catabolic process + 109
              polyadenylation-dependent mRNA catabolic process + 4
              polyuridylation-dependent mRNA catabolic process + 3
              positive regulation of mRNA catabolic process + 49
              regulation of mRNA catabolic process + 123
Path 2
Term Annotations click to browse term
  biological_process 19439
    metabolic process 11638
      cellular metabolic process 10639
        cellular aromatic compound metabolic process 5503
          nucleobase-containing compound metabolic process 5274
            nucleic acid metabolic process 4784
              RNA metabolic process 4296
                RNA catabolic process 254
                  mRNA catabolic process 216
                    mitochondrial mRNA catabolic process + 3
                    negative regulation of mRNA catabolic process + 55
                    nuclear-transcribed mRNA catabolic process + 109
                    polyadenylation-dependent mRNA catabolic process + 4
                    polyuridylation-dependent mRNA catabolic process + 3
                    positive regulation of mRNA catabolic process + 49
                    regulation of mRNA catabolic process + 123
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.