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ONTOLOGY REPORT - ANNOTATIONS


Term:mRNA export from nucleus
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Accession:GO:0006406 term browser browse the term
Definition:The directed movement of mRNA from the nucleus to the cytoplasm.
Synonyms:exact_synonym: mRNA export from cell nucleus;   mRNA export out of nucleus;   mRNA transport from nucleus to cytoplasm;   mRNA-nucleus export


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mRNA export from nucleus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Alkbh5 alkB homolog 5, RNA demethylase JBrowse link 10 46,906,314 46,927,759 RGD:1624291
RGD:13792537
RGD:1600115
G Alyref Aly/REF export factor JBrowse link 10 109,768,593 109,774,639 RGD:1624291
G Chtop chromatin target of PRMT1 JBrowse link 2 189,887,850 189,900,079 RGD:1624291
G Da2-19 uncharacterized LOC302729 JBrowse link X 48,196,789 48,213,506 RGD:1600115
RGD:13792537
G Ddx25 DEAD-box helicase 25 JBrowse link 8 36,744,686 36,760,720 RGD:1600115
RGD:1624291
G Ddx39a DExD-box helicase 39A JBrowse link 19 24,846,530 24,854,886 RGD:1624291
RGD:1600115
G Ddx39b DExD-box helicase 39B JBrowse link 20 4,806,103 4,818,600 RGD:1624291
RGD:1600115
G Eif5a eukaryotic translation initiation factor 5A JBrowse link 10 56,527,075 56,531,615 RGD:1624291
G Fyttd1 forty-two-three domain containing 1 JBrowse link 11 71,113,931 71,136,694 RGD:1600115
RGD:13792537
RGD:1624291
G Gle1 GLE1 RNA export mediator JBrowse link 3 8,498,098 8,530,218 RGD:13792537
G Hhex hematopoietically expressed homeobox JBrowse link 1 256,101,994 256,107,581 RGD:1624291
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 JBrowse link 4 81,237,496 81,241,281 RGD:9685424
RGD:1624291
RGD:1600115
RGD:9685477
G LOC679894 similar to THO complex subunit 2 (Tho2) JBrowse link 14 6,561,962 6,601,906 RGD:13792537
G Mcm3ap minichromosome maintenance complex component 3 associated protein JBrowse link 20 12,879,304 12,917,069 RGD:13792537
G Ncbp1 nuclear cap binding protein subunit 1 JBrowse link 5 61,734,118 61,767,098 RGD:1600115
RGD:13792537
RGD:1624291
G Nup107 nucleoporin 107 JBrowse link 7 60,781,724 60,825,225 RGD:1624291
RGD:1600115
RGD:13792537
RGD:8553287
G Nup133 nucleoporin 133 JBrowse link 19 56,681,965 56,731,404 RGD:1624291
RGD:1600115
G Nup155 nucleoporin 155 JBrowse link 2 57,206,665 57,258,242 RGD:1624291
RGD:1600115
G Nup160 nucleoporin 160 JBrowse link 3 79,496,239 79,562,163 RGD:1624291
RGD:1600115
G Nup214 nucleoporin 214 JBrowse link 3
3
9,227,869
10,993,584
9,236,878
11,070,638
RGD:1624291
RGD:1600115
G Nup85 nucleoporin 85 JBrowse link 10 104,118,999 104,137,258 RGD:13792537
G Nup88 nucleoporin 88 JBrowse link 10 57,581,828 57,606,171 RGD:13792537
G Nxf1 nuclear RNA export factor 1 JBrowse link 1 224,957,535 224,970,728 RGD:1600115
RGD:1624291
G Nxf3 nuclear RNA export factor 3 JBrowse link X 106,562,957 106,587,487 RGD:1624291
G Nxf7 nuclear RNA export factor 7 JBrowse link X 106,049,075 106,066,334 RGD:1624291
G Rae1 ribonucleic acid export 1 JBrowse link 3 171,012,984 171,030,392 RGD:1600115
G Rbm15b RNA binding motif protein 15B JBrowse link 8 115,618,242 115,623,068 RGD:1600115
RGD:1624291
G Sarnp SAP domain containing ribonucleoprotein JBrowse link 7 3,246,220 3,300,467 RGD:1624291
RGD:1600115
G Sem1 SEM1, 26S proteasome complex subunit JBrowse link 4 32,067,444 32,087,600 RGD:1600115
G Srsf3 serine and arginine rich splicing factor 3 JBrowse link 20 6,288,285 6,298,218 RGD:1600115
RGD:1624291
G Thoc1 THO complex 1 JBrowse link 18 1,142,540 1,177,084 RGD:1624291
G Thoc2 THO complex 2 JBrowse link X 128,153,824 128,268,327 RGD:1624291
RGD:13792537
G Thoc3 THO complex 3 JBrowse link 17 10,676,943 10,686,134 RGD:1624291
RGD:13792537
G Thoc5 THO complex 5 JBrowse link 14 85,138,219 85,171,729 RGD:1624291
RGD:13792537
G Thoc6 THO complex 6 JBrowse link 10 12,989,135 12,994,495 RGD:1624291
RGD:1600115
G Thoc7 THO complex 7 JBrowse link 15 12,569,235 12,584,101 RGD:1624291
RGD:13792537
G Ythdc1 YTH domain containing 1 JBrowse link 14 22,971,834 23,002,326 RGD:1600115
RGD:1624291
mRNA export from nucleus in response to heat stress term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Polr2d RNA polymerase II subunit D JBrowse link 18 24,570,762 24,577,894 RGD:13792537
G Tpr translocated promoter region, nuclear basket protein JBrowse link 13 67,611,685 67,672,833 RGD:1624291
RGD:1600115
poly(A)+ mRNA export from nucleus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ddx19a DEAD-box helicase 19A JBrowse link 19 43,251,510 43,271,865 RGD:13792537
G Ddx19b DEAD-box helicase 19B JBrowse link 19 43,217,199 43,246,196 RGD:13792537
G Ddx25 DEAD-box helicase 25 JBrowse link 8 36,744,686 36,760,720 RGD:13792537
G Eny2 ENY2, transcription and export complex 2 subunit JBrowse link 7 83,348,656 83,358,430 RGD:13792537
RGD:1624291
G Gle1 GLE1 RNA export mediator JBrowse link 3 8,498,098 8,530,218 RGD:1600115
G Hhex hematopoietically expressed homeobox JBrowse link 1 256,101,994 256,107,581 RGD:1624291
RGD:1600115
G LOC500827 similar to hypothetical protein FLJ35821 JBrowse link 7 40,316,165 40,350,482 RGD:13792537
G Mcm3ap minichromosome maintenance complex component 3 associated protein JBrowse link 20 12,879,304 12,917,069 RGD:1624291
RGD:1600115
G Nup93 nucleoporin 93 JBrowse link 19 11,159,769 11,263,980 RGD:13792537
G Nxf1 nuclear RNA export factor 1 JBrowse link 1 224,957,535 224,970,728 RGD:1624291
RGD:13792537
RGD:1600115
G Nxf2 nuclear RNA export factor 2 JBrowse link X 105,772,718 105,793,324 RGD:13792537
G Nxf3 nuclear RNA export factor 3 JBrowse link X 106,562,957 106,587,487 RGD:1624291
RGD:13792537
G Nxf7 nuclear RNA export factor 7 JBrowse link X 106,049,075 106,066,334 RGD:1624291
RGD:13792537
G Pabpn1 poly(A) binding protein, nuclear 1 JBrowse link 15 33,555,640 33,560,251 RGD:1624291
RGD:1600115
G Pcid2 PCI domain containing 2 JBrowse link 16 81,757,582 81,783,047 RGD:13792537
G Poldip3 DNA polymerase delta interacting protein 3 JBrowse link 7 123,992,167 124,020,596 RGD:1624291
RGD:1600115
G Thoc2 THO complex 2 JBrowse link X 128,153,824 128,268,327 RGD:1624291
G Zc3h11a zinc finger CCCH-type containing 11A JBrowse link 13 50,196,042 50,234,862 RGD:1624291
RGD:13792537
regulation of mRNA export from nucleus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Akap8l A-kinase anchoring protein 8 like JBrowse link 7 14,340,168 14,369,835 RGD:1624291
RGD:1600115
G Iws1 interacts with SUPT6H, CTD assembly factor 1 JBrowse link 18 24,849,508 24,891,339 RGD:1600115
RGD:13792537
RGD:1624291
G Setd2 SET domain containing 2, histone lysine methyltransferase JBrowse link 8 118,802,478 118,888,224 RGD:1624291
RGD:1600115
G Supt6h SPT6 homolog, histone chaperone and transcription elongation factor JBrowse link 10 65,470,470 65,507,581 RGD:1624291
RGD:1600115
G Thoc2 THO complex 2 JBrowse link X 128,153,824 128,268,327 RGD:1624291
RGD:1600115
G Thoc5 THO complex 5 JBrowse link 14 85,138,219 85,171,729 RGD:1624291
G Tpr translocated promoter region, nuclear basket protein JBrowse link 13 67,611,685 67,672,833 RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18166
    metabolic process 10845
      organic substance metabolic process 10283
        macromolecule metabolic process 8818
          gene expression 5030
            mRNA export from nucleus 53
              mRNA export from nucleus in response to heat stress + 2
              poly(A)+ mRNA export from nucleus 18
              regulation of mRNA export from nucleus + 7
Path 2
Term Annotations click to browse term
  biological_process 18166
    localization 6061
      establishment of localization 4655
        transport 4517
          nitrogen compound transport 2185
            amide transport 1867
              peptide transport 1834
                protein transport 1777
                  intracellular protein transport 957
                    protein export from nucleus 126
                      ribonucleoprotein complex export from nucleus 69
                        mRNA-containing ribonucleoprotein complex export from nucleus 53
                          mRNA export from nucleus 53
                            mRNA export from nucleus in response to heat stress + 2
                            poly(A)+ mRNA export from nucleus 18
                            regulation of mRNA export from nucleus + 7
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.