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ONTOLOGY REPORT - ANNOTATIONS


Term:cellular amino acid metabolic process
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Accession:GO:0006520 term browser browse the term
Definition:The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells.
Synonyms:exact_synonym: amino acid and derivative metabolism;   amino acid metabolic process;   cellular amino acid and derivative metabolic process;   cellular amino acid metabolism
 alt_id: GO:0006519


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cellular amino acid metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acy1 aminoacylase 1 JBrowse link 8 115,134,792 115,140,171 RGD:1600115
G Asl argininosuccinate lyase JBrowse link 12 30,160,922 30,178,348 RGD:1624291
G Asns asparagine synthetase (glutamine-hydrolyzing) JBrowse link 4 33,742,876 33,761,106 RGD:1298553
G Aspg asparaginase JBrowse link 6 136,682,279 136,701,673 RGD:1600115
G Ddc dopa decarboxylase JBrowse link 14 91,905,919 91,996,816 RGD:1600115
G Dio1 iodothyronine deiodinase 1 JBrowse link 5 126,894,837 126,911,532 RGD:1624291
G Ggt1 gamma-glutamyltransferase 1 JBrowse link 20 14,019,723 14,045,781 RGD:1624291
G Ggt5 gamma-glutamyltransferase 5 JBrowse link 20 13,988,444 14,001,296 RGD:1624291
G Got2 glutamic-oxaloacetic transaminase 2 JBrowse link 19 9,587,637 9,613,323 RGD:632939
RGD:1582383
G Hdc histidine decarboxylase JBrowse link 3 119,057,524 119,075,599 RGD:1600115
G Hgd homogentisate 1, 2-dioxygenase JBrowse link 11 65,983,221 66,034,555 RGD:1624291
RGD:13792537
G Kyat3 kynurenine aminotransferase 3 JBrowse link 2 248,644,473 248,690,289 RGD:1624291
RGD:1600115
G Phgdh phosphoglycerate dehydrogenase JBrowse link 2 200,484,245 200,513,564 RGD:13792537
G Pm20d1 peptidase M20 domain containing 1 JBrowse link 13 48,575,094 48,596,515 RGD:1624291
RGD:13792537
G Slc16a2 solute carrier family 16 member 2 JBrowse link X 74,578,600 74,706,068 RGD:1624291
G Tat tyrosine aminotransferase JBrowse link 19 41,675,639 41,686,195 RGD:1582407
'de novo' NAD biosynthetic process from tryptophan term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Afmid arylformamidase JBrowse link 10 106,828,963 106,844,314 RGD:1600115
G Haao 3-hydroxyanthranilate 3,4-dioxygenase JBrowse link 6 7,045,145 7,059,227 RGD:13792537
RGD:1600115
G Ido1 indoleamine 2,3-dioxygenase 1 JBrowse link 16 72,216,326 72,228,098 RGD:13792537
G Ido2 indoleamine 2,3-dioxygenase 2 JBrowse link 16 72,232,852 72,291,227 RGD:13792537
G Kmo kynurenine 3-monooxygenase JBrowse link 13 93,684,324 93,715,378 RGD:1600115
G Kynu kynureninase JBrowse link 3 28,416,926 28,566,939 RGD:1600115
1-aminocyclopropane-1-carboxylate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Accs 1-aminocyclopropane-1-carboxylate synthase JBrowse link 3 82,742,830 82,757,273 RGD:1600115
4-hydroxyproline catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hoga1 4-hydroxy-2-oxoglutarate aldolase 1 JBrowse link 1 261,291,742 261,319,743 RGD:1624291
alanyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aars alanyl-tRNA synthetase JBrowse link 19 43,193,264 43,215,281 RGD:2302982
RGD:13792537
RGD:1624291
G Aars2 alanyl-tRNA synthetase 2, mitochondrial JBrowse link 9 17,869,301 17,881,762 RGD:13792537
G Aarsd1 alanyl-tRNA synthetase domain containing 1 JBrowse link 10 89,317,974 89,331,078 RGD:1600115
alpha-amino acid metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aadat aminoadipate aminotransferase JBrowse link 16 32,832,001 32,868,680 RGD:13792537
amino acid activation for nonribosomal peptide biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aasdh aminoadipate-semialdehyde dehydrogenase JBrowse link 14 33,619,990 33,647,268 RGD:1624291
ammonia assimilation cycle term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Asl argininosuccinate lyase JBrowse link 12 30,160,922 30,178,348 RGD:1624291
RGD:1600115
G Glul glutamate-ammonia ligase JBrowse link 13 71,331,052 71,340,207 RGD:632694
RGD:2301547
anthranilate metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Haao 3-hydroxyanthranilate 3,4-dioxygenase JBrowse link 6 7,045,145 7,059,227 RGD:1600115
G Kmo kynurenine 3-monooxygenase JBrowse link 13 93,684,324 93,715,378 RGD:1600115
G Kynu kynureninase JBrowse link 3 28,416,926 28,566,939 RGD:1624291
RGD:13792537
arginine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Asl argininosuccinate lyase JBrowse link 12 30,160,922 30,178,348 RGD:632221
G Ass1 argininosuccinate synthase 1 JBrowse link 3 10,327,411 10,375,847 RGD:631755
RGD:13792537
RGD:1624291
RGD:12859071
RGD:1600115
G Nags N-acetylglutamate synthase JBrowse link 10 90,084,607 90,089,693 RGD:13792537
arginine biosynthetic process via ornithine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Asl argininosuccinate lyase JBrowse link 12 30,160,922 30,178,348 RGD:1600115
RGD:13792537
G Otc ornithine carbamoyltransferase JBrowse link X 13,524,804 13,601,074 RGD:13792537
arginine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ddah1 dimethylarginine dimethylaminohydrolase 1 JBrowse link 2 251,634,368 251,766,009 RGD:1624291
G Ddah2 dimethylarginine dimethylaminohydrolase 2 JBrowse link 20 5,049,260 5,052,573 RGD:1600115
G Fah fumarylacetoacetate hydrolase JBrowse link 1 146,713,663 146,736,339 RGD:1624291
RGD:1600115
G Nos1 nitric oxide synthase 1 JBrowse link 12 44,214,949 44,405,530 RGD:8553334
RGD:13792537
G Nos2 nitric oxide synthase 2 JBrowse link 10 66,188,290 66,221,621 RGD:1624291
RGD:13792537
RGD:1600115
G Nos3 nitric oxide synthase 3 JBrowse link 4 7,321,908 7,342,404 RGD:1600115
RGD:13792537
RGD:1624291
arginine catabolic process to glutamate term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Oat ornithine aminotransferase JBrowse link 1 204,562,289 204,582,070 RGD:13792537
arginine catabolic process to ornithine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arg1 arginase 1 JBrowse link 1 21,525,421 21,537,872 RGD:8693655
RGD:13792537
G Arg2 arginase 2 JBrowse link 6 102,311,097 102,338,406 RGD:1358311
RGD:13792537
RGD:8693655
arginine catabolic process to proline via ornithine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Oat ornithine aminotransferase JBrowse link 1 204,562,289 204,582,070 RGD:13792537
arginine deiminase pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Padi3 peptidyl arginine deiminase 3 JBrowse link 5 159,309,000 159,336,429 RGD:69926
arginine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arg1 arginase 1 JBrowse link 1 21,525,421 21,537,872 RGD:2300098
G Arg2 arginase 2 JBrowse link 6 102,311,097 102,338,406 RGD:1582129
RGD:1600115
G Ddah1 dimethylarginine dimethylaminohydrolase 1 JBrowse link 2 251,634,368 251,766,009 RGD:1625578
RGD:13792537
G Ddah2 dimethylarginine dimethylaminohydrolase 2 JBrowse link 20 5,049,260 5,052,573 RGD:1625578
RGD:13792537
G Slc39a8 solute carrier family 39 member 8 JBrowse link 2 241,028,851 241,092,584 RGD:1600115
RGD:1624291
argininosuccinate metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Asl argininosuccinate lyase JBrowse link 12 30,160,922 30,178,348 RGD:1599287
RGD:2300098
G Ass1 argininosuccinate synthase 1 JBrowse link 3 10,327,411 10,375,847 RGD:2300098
RGD:13792537
RGD:1624291
arginyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dalrd3 DALR anticodon binding domain containing 3 JBrowse link 8 117,355,943 117,358,819 RGD:1600115
G Rars1 arginyl-tRNA synthetase 1 JBrowse link 10 20,633,630 20,658,074 RGD:2303394
RGD:13792537
RGD:1624291
G Rars2 arginyl-tRNA synthetase 2, mitochondrial JBrowse link 5 50,075,510 50,127,625 RGD:13792537
aromatic amino acid family metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gstz1 glutathione S-transferase zeta 1 JBrowse link 6 111,176,798 111,187,246 RGD:1600115
G Tph2 tryptophan hydroxylase 2 JBrowse link 7 58,042,279 58,149,220 RGD:1600115
asparagine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Asns asparagine synthetase (glutamine-hydrolyzing) JBrowse link 4 33,742,876 33,761,106 RGD:2316002
RGD:13792537
RGD:1624291
G Asnsd1 asparagine synthetase domain containing 1 JBrowse link 9 52,988,042 53,009,054 RGD:1600115
asparagine catabolic process via L-aspartate term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Asrgl1 asparaginase and isoaspartyl peptidase 1 JBrowse link 1 225,309,737 225,329,743 RGD:1299508
RGD:13792537
RGD:1624291
asparagine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aspg asparaginase JBrowse link 6 136,682,279 136,701,673 RGD:1299414
G Nit2 nitrilase family, member 2 JBrowse link 11 45,462,345 45,473,107 RGD:1624291
RGD:13792537
asparaginyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nars1 asparaginyl-tRNA synthetase 1 JBrowse link 18 59,986,350 60,002,644 RGD:1624291
G Nars2 asparaginyl-tRNA synthetase 2, mitochondrial JBrowse link 1 161,922,132 162,035,817 RGD:1600115
aspartate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Got1 glutamic-oxaloacetic transaminase 1 JBrowse link 1 263,246,248 263,269,762 RGD:1624291
RGD:13792537
G Got1l1 glutamic-oxaloacetic transaminase 1-like 1 JBrowse link 16 69,022,756 69,035,507 RGD:13792537
G Got2 glutamic-oxaloacetic transaminase 2 JBrowse link 19 9,587,637 9,613,323 RGD:1624291
aspartate catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ddo D-aspartate oxidase JBrowse link 20 48,739,812 48,758,958 RGD:1624291
RGD:13792537
G Got1 glutamic-oxaloacetic transaminase 1 JBrowse link 1 263,246,248 263,269,762 RGD:1624291
G Got2 glutamic-oxaloacetic transaminase 2 JBrowse link 19 9,587,637 9,613,323 RGD:1624291
RGD:13792537
aspartate metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adss adenylosuccinate synthase JBrowse link 13 95,913,426 95,943,761 RGD:5135533
G Adssl1 adenylosuccinate synthase like 1 JBrowse link 6 137,184,818 137,206,694 RGD:5135303
G Ass1 argininosuccinate synthase 1 JBrowse link 3 10,327,411 10,375,847 RGD:1624291
G Ddo D-aspartate oxidase JBrowse link 20 48,739,812 48,758,958 RGD:1624291
RGD:13792537
G Got1 glutamic-oxaloacetic transaminase 1 JBrowse link 1 263,246,248 263,269,762 RGD:2289377
RGD:1600115
G Got2 glutamic-oxaloacetic transaminase 2 JBrowse link 19 9,587,637 9,613,323 RGD:2289396
RGD:1600115
aspartyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dars aspartyl-tRNA synthetase JBrowse link 13 45,074,067 45,127,815 RGD:13792537
beta-alanine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dpyd dihydropyrimidine dehydrogenase JBrowse link 2 221,823,692 222,694,627 RGD:1600115
G Upb1 beta-ureidopropionase 1 JBrowse link 20 14,167,383 14,193,724 RGD:634224
beta-alanine biosynthetic process via 3-ureidopropionate term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Upb1 beta-ureidopropionase 1 JBrowse link 20 14,167,383 14,193,724 RGD:13792537
RGD:1624291
RGD:1600115
beta-alanine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aldh6a1 aldehyde dehydrogenase 6 family, member A1 JBrowse link 6 108,146,552 108,167,185 RGD:1599052
beta-alanine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aasdh aminoadipate-semialdehyde dehydrogenase JBrowse link 14 33,619,990 33,647,268 RGD:1624291
G Dpys dihydropyrimidinase JBrowse link 7 78,769,918 78,847,941 RGD:1624990
G Upb1 beta-ureidopropionase 1 JBrowse link 20 14,167,383 14,193,724 RGD:1624989
RGD:13792537
branched-chain amino acid biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bcat1 branched chain amino acid transaminase 1 JBrowse link 4 179,259,305 179,340,021 RGD:1600115
G Bcat2 branched chain amino acid transaminase 2 JBrowse link 1 101,553,900 101,572,103 RGD:1600115
branched-chain amino acid catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bcat1 branched chain amino acid transaminase 1 JBrowse link 4 179,259,305 179,340,021 RGD:1624291
G Bcat2 branched chain amino acid transaminase 2 JBrowse link 1 101,553,900 101,572,103 RGD:1582175
RGD:1624291
G Bckdha branched chain keto acid dehydrogenase E1 subunit alpha JBrowse link 1 82,423,291 82,452,094 RGD:631719
RGD:13792537
RGD:1600115
RGD:1624291
G Bckdhb branched chain keto acid dehydrogenase E1 subunit beta JBrowse link 8 91,464,229 91,656,134 RGD:1624291
RGD:13792537
RGD:1600115
G Bckdk branched chain ketoacid dehydrogenase kinase JBrowse link 1 199,351,628 199,356,299 RGD:68918
RGD:68712
G Ivd isovaleryl-CoA dehydrogenase JBrowse link 3 110,669,355 110,689,789 RGD:1624291
G Slc25a44 solute carrier family 25, member 44 JBrowse link 2 187,772,013 187,786,829 RGD:1624291
branched-chain amino acid metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bcat2 branched chain amino acid transaminase 2 JBrowse link 1 101,553,900 101,572,103 RGD:62398
RGD:1624291
cellular amino acid catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Il4i1 interleukin 4 induced 1 JBrowse link 1 100,811,727 100,836,901 RGD:13792537
G Lao1 L-amino acid oxidase 1 JBrowse link 5 138,011,760 138,021,653 RGD:13792537
G Pcca propionyl-CoA carboxylase subunit alpha JBrowse link 15 108,960,509 109,306,879 RGD:633579
G Pccb propionyl-CoA carboxylase subunit beta JBrowse link 8 109,368,887 109,418,871 RGD:633580
G RGD1308564 similar to L-amino acid oxidase 1 JBrowse link 10 43,715,911 43,733,329 RGD:13792537
citrulline biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aldh18a1 aldehyde dehydrogenase 18 family, member A1 JBrowse link 1 259,641,673 259,674,521 RGD:1624291
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase JBrowse link 6 26,657,507 26,680,459 RGD:10755426
RGD:13792537
G Otc ornithine carbamoyltransferase JBrowse link X 13,524,804 13,601,074 RGD:4144071
RGD:13792537
RGD:1624291
citrulline metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ass1 argininosuccinate synthase 1 JBrowse link 3 10,327,411 10,375,847 RGD:1624291
G Ddah1 dimethylarginine dimethylaminohydrolase 1 JBrowse link 2 251,634,368 251,766,009 RGD:1624291
RGD:13792537
RGD:1600115
G Ddah2 dimethylarginine dimethylaminohydrolase 2 JBrowse link 20 5,049,260 5,052,573 RGD:1624291
RGD:13792537
RGD:1600115
G Htt huntingtin JBrowse link 14 81,105,139 81,254,637 RGD:1624291
cysteine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cbs cystathionine beta synthase JBrowse link 20 10,361,987 10,386,663 RGD:1624291
G Cth cystathionine gamma-lyase JBrowse link 2 264,266,959 264,293,040 RGD:1359024
RGD:1600115
RGD:1624291
G Ggt1 gamma-glutamyltransferase 1 JBrowse link 20 14,019,723 14,045,781 RGD:1624291
cysteine biosynthetic process from serine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cbs cystathionine beta synthase JBrowse link 20 10,361,987 10,386,663 RGD:1359024
cysteine biosynthetic process via cystathionine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cbs cystathionine beta synthase JBrowse link 20 10,361,987 10,386,663 RGD:1600115
G Cth cystathionine gamma-lyase JBrowse link 2 264,266,959 264,293,040 RGD:1624291
RGD:13792537
cysteine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdo1 cysteine dioxygenase type 1 JBrowse link 18 40,702,027 40,716,901 RGD:68765
G Gclc glutamate-cysteine ligase, catalytic subunit JBrowse link 8 85,059,051 85,097,471 RGD:1624291
RGD:1600115
G Gclm glutamate cysteine ligase, modifier subunit JBrowse link 2 225,827,504 225,847,876 RGD:1624291
cysteinyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cars cysteinyl-tRNA synthetase JBrowse link 1 216,759,367 216,801,652 RGD:1624291
RGD:13792537
G Cars2 cysteinyl-tRNA synthetase 2, mitochondrial JBrowse link 16 83,288,613 83,325,706 RGD:13792537
D-alanine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dao D-amino-acid oxidase JBrowse link 12 48,353,691 48,373,647 RGD:1600115
RGD:13792537
RGD:1624291
D-amino acid catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dao D-amino-acid oxidase JBrowse link 12 48,353,691 48,373,647 RGD:13792537
G Ddo D-aspartate oxidase JBrowse link 20 48,739,812 48,758,958 RGD:1624291
RGD:13792537
D-serine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Srr serine racemase JBrowse link 10 61,756,138 61,772,327 RGD:1624291
RGD:13792537
D-serine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dao D-amino-acid oxidase JBrowse link 12 48,353,691 48,373,647 RGD:1600115
RGD:13792537
RGD:1624291
D-serine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dao D-amino-acid oxidase JBrowse link 12 48,353,691 48,373,647 RGD:1624291
G Srr serine racemase JBrowse link 10 61,756,138 61,772,327 RGD:8554326
RGD:1624291
dopamine biosynthetic process from tyrosine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Th tyrosine hydroxylase JBrowse link 1 216,073,034 216,080,287 RGD:1580046
RGD:13792537
RGD:1624291
RGD:5129111
RGD:5130972
gamma-aminobutyric acid biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abat 4-aminobutyrate aminotransferase JBrowse link 10 7,093,406 7,200,439 RGD:9588538
G Gad1 glutamate decarboxylase 1 JBrowse link 3 56,861,440 56,902,139 RGD:6480258
G Slc1a3 solute carrier family 1 member 3 JBrowse link 2 57,860,881 57,935,363 RGD:1624291
RGD:1600115
gamma-aminobutyric acid catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abat 4-aminobutyrate aminotransferase JBrowse link 10 7,093,406 7,200,439 RGD:631980
RGD:1624291
RGD:13792537
G Aldh5a1 aldehyde dehydrogenase 5 family, member A1 JBrowse link 17 42,133,076 42,159,413 RGD:1600115
RGD:1624291
RGD:632258
gamma-aminobutyric acid metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abat 4-aminobutyrate aminotransferase JBrowse link 10 7,093,406 7,200,439 RGD:1624291
G Aldh5a1 aldehyde dehydrogenase 5 family, member A1 JBrowse link 17 42,133,076 42,159,413 RGD:1624291
G Phgdh phosphoglycerate dehydrogenase JBrowse link 2 200,484,245 200,513,564 RGD:1624291
glutamate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gls glutaminase JBrowse link 9 54,212,622 54,284,879 RGD:1600115
RGD:13792537
RGD:1624291
G Gls2 glutaminase 2 JBrowse link 7 2,605,679 2,621,853 RGD:13792537
G Glud1 glutamate dehydrogenase 1 JBrowse link 16 10,661,486 10,695,557 RGD:1624291
G Slc25a12 solute carrier family 25 member 12 JBrowse link 3 57,881,951 57,998,214 RGD:13628741
glutamate catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Glud1 glutamate dehydrogenase 1 JBrowse link 16 10,661,486 10,695,557 RGD:1601355
RGD:13792537
RGD:1624291
glutamate catabolic process to 2-oxoglutarate term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Got1 glutamic-oxaloacetic transaminase 1 JBrowse link 1 263,246,248 263,269,762 RGD:1624291
RGD:13504861
G Got2 glutamic-oxaloacetic transaminase 2 JBrowse link 19 9,587,637 9,613,323 RGD:1624291
RGD:13504861
glutamate catabolic process to aspartate term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Got1 glutamic-oxaloacetic transaminase 1 JBrowse link 1 263,246,248 263,269,762 RGD:1624291
G Got2 glutamic-oxaloacetic transaminase 2 JBrowse link 19 9,587,637 9,613,323 RGD:1624291
glutamate catabolic process via 2-oxoglutarate term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adhfe1 alcohol dehydrogenase, iron containing, 1 JBrowse link 5 9,403,194 9,429,783 RGD:1600115
RGD:1624291
glutamate decarboxylation to succinate term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gad2 glutamate decarboxylase 2 JBrowse link 17 89,171,576 89,234,770 RGD:1625237
glutamate metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aadat aminoadipate aminotransferase JBrowse link 16 32,832,001 32,868,680 RGD:1624291
RGD:1600115
G Aldh18a1 aldehyde dehydrogenase 18 family, member A1 JBrowse link 1 259,641,673 259,674,521 RGD:1624291
G Aldh5a1 aldehyde dehydrogenase 5 family, member A1 JBrowse link 17 42,133,076 42,159,413 RGD:1624291
RGD:1600115
G Dglucy D-glutamate cyclase JBrowse link 6 124,786,164 124,870,244 RGD:1624291
RGD:13792537
G Fpgs folylpolyglutamate synthase JBrowse link 3 11,717,667 11,729,694 RGD:1624291
G Gclc glutamate-cysteine ligase, catalytic subunit JBrowse link 8 85,059,051 85,097,471 RGD:1600115
RGD:1624291
G Gclm glutamate cysteine ligase, modifier subunit JBrowse link 2 225,827,504 225,847,876 RGD:1600115
RGD:1624291
G Ggt1 gamma-glutamyltransferase 1 JBrowse link 20 14,019,723 14,045,781 RGD:1624291
RGD:1600115
G Glul glutamate-ammonia ligase JBrowse link 13 71,331,052 71,340,207 RGD:2301548
G Got1 glutamic-oxaloacetic transaminase 1 JBrowse link 1 263,246,248 263,269,762 RGD:1600115
G Got2 glutamic-oxaloacetic transaminase 2 JBrowse link 19 9,587,637 9,613,323 RGD:1600115
G Mthfs methenyltetrahydrofolate synthetase JBrowse link 8 96,564,877 96,614,386 RGD:1624291
G Nags N-acetylglutamate synthase JBrowse link 10 90,084,607 90,089,693 RGD:1624291
RGD:13792537
G Tat tyrosine aminotransferase JBrowse link 19 41,675,639 41,686,195 RGD:1624291
RGD:1600115
glutamine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Glul glutamate-ammonia ligase JBrowse link 13 71,331,052 71,340,207 RGD:2301548
RGD:13792537
RGD:2301547
G Lgsn lengsin, lens protein with glutamine synthetase domain JBrowse link 9 37,458,603 37,490,117 RGD:13792537
glutamine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gls glutaminase JBrowse link 9 54,212,622 54,284,879 RGD:728510
RGD:13792537
RGD:1624291
RGD:1600115
G Gls2 glutaminase 2 JBrowse link 7 2,605,679 2,621,853 RGD:13792537
G Ppat phosphoribosyl pyrophosphate amidotransferase JBrowse link 14 33,580,541 33,614,919 RGD:633710
glutamine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adssl1 adenylosuccinate synthase like 1 JBrowse link 6 137,184,818 137,206,694 RGD:5135508
G Asns asparagine synthetase (glutamine-hydrolyzing) JBrowse link 4 33,742,876 33,761,106 RGD:1600115
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase JBrowse link 6 26,657,507 26,680,459 RGD:5132588
RGD:13792537
RGD:10755425
G Cps1 carbamoyl-phosphate synthase 1 JBrowse link 9 74,113,437 74,236,274 RGD:13792537
G Ctps1 CTP synthase 1 JBrowse link 5 139,475,934 139,505,065 RGD:1600115
G Ctps2 CTP synthase 2 JBrowse link X 33,383,087 33,522,852 RGD:1600115
G Gfpt1 glutamine fructose-6-phosphate transaminase 1 JBrowse link 4 118,852,046 118,901,583 RGD:1600115
G Gfpt2 glutamine-fructose-6-phosphate transaminase 2 JBrowse link 10 35,279,237 35,325,506 RGD:1600115
G Gls glutaminase JBrowse link 9 54,212,622 54,284,879 RGD:1600115
G Gls2 glutaminase 2 JBrowse link 7 2,605,679 2,621,853 RGD:1600115
G Glud1 glutamate dehydrogenase 1 JBrowse link 16 10,661,486 10,695,557 RGD:1624291
RGD:1600115
G Gmps guanine monophosphate synthase JBrowse link 2 154,555,967 154,590,662 RGD:1600115
G Mecp2 methyl CpG binding protein 2 JBrowse link X 156,650,389 156,713,813 RGD:1624291
RGD:1600115
G Nit2 nitrilase family, member 2 JBrowse link 11 45,462,345 45,473,107 RGD:1624291
RGD:13792537
G Pfas phosphoribosylformylglycinamidine synthase JBrowse link 10 55,571,881 55,593,384 RGD:1599004
G Phgdh phosphoglycerate dehydrogenase JBrowse link 2 200,484,245 200,513,564 RGD:1624291
G Sirt4 sirtuin 4 JBrowse link 12 46,862,358 46,876,593 RGD:1624291
glutaminyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lars1 leucyl-tRNA synthetase 1 JBrowse link 18 36,524,013 36,579,471 RGD:1624291
G LOC100911132 glutamine--tRNA ligase-like RGD:13792537
G Qars1 glutaminyl-tRNA synthetase 1 JBrowse link 8 117,297,670 117,305,708 RGD:1600115
RGD:13792537
RGD:1624291
glutaminyl-tRNAGln biosynthesis via transamidation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gatb glutamyl-tRNA amidotransferase subunit B JBrowse link 2 184,600,695 184,679,980 RGD:1624291
RGD:13792537
G Gatc glutamyl-tRNA amidotransferase subunit C JBrowse link 12 47,031,545 47,039,556 RGD:1624291
RGD:13792537
RGD:1600115
G Qrsl1 glutaminyl-tRNA amidotransferase subunit QRSL1 JBrowse link 20 48,855,839 48,881,112 RGD:1624291
RGD:13792537
glutamyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ears2 glutamyl-tRNA synthetase 2, mitochondrial JBrowse link 1 191,997,512 192,025,350 RGD:1624291
RGD:13792537
G Eprs glutamyl-prolyl-tRNA synthetase JBrowse link 13 103,300,911 103,371,651 RGD:1600115
glycine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LOC688286 similar to threonine aldolase 1 JBrowse link 10 106,877,585 106,883,706 RGD:13792537
G Sardh sarcosine dehydrogenase JBrowse link 3 5,737,203 5,802,153 RGD:634034
G Shmt1 serine hydroxymethyltransferase 1 JBrowse link 10 47,030,813 47,059,216 RGD:2300383
G Shmt2 serine hydroxymethyltransferase 2 JBrowse link 7 70,824,718 70,829,822 RGD:2300383
glycine biosynthetic process from serine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Shmt1 serine hydroxymethyltransferase 1 JBrowse link 10 47,030,813 47,059,216 RGD:2300383
RGD:13792537
G Shmt2 serine hydroxymethyltransferase 2 JBrowse link 7 70,824,718 70,829,822 RGD:2300383
RGD:13792537
glycine biosynthetic process, by transamination of glyoxylate term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Agxt alanine--glyoxylate and serine--pyruvate aminotransferase JBrowse link 9 100,281,339 100,291,292 RGD:1599457
RGD:13792537
RGD:1624291
G Agxt2 alanine-glyoxylate aminotransferase 2 JBrowse link 2 60,337,667 60,379,144 RGD:1624291
glycine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gldc glycine decarboxylase JBrowse link 1 248,295,140 248,377,122 RGD:1624291
glycine decarboxylation via glycine cleavage system term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07007134.1 RGD:1600115
G AABR07067762.1 RGD:1600115
G Amt aminomethyltransferase JBrowse link 8 117,068,388 117,078,633 RGD:1624291
RGD:13792537
G Gcsh glycine cleavage system protein H JBrowse link 19 49,522,054 49,532,811 RGD:1598699
G Gldc glycine decarboxylase JBrowse link 1 248,295,140 248,377,122 RGD:1642728
RGD:13792537
glycine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Baat bile acid CoA:amino acid N-acyltransferase JBrowse link 5 64,768,397 64,777,368 RGD:1624291
G Gart phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase JBrowse link 11 31,780,477 31,805,728 RGD:2301990
G Glyat glycine-N-acyltransferase JBrowse link 1 229,060,125 229,081,113 RGD:1624291
RGD:13792537
RGD:1600115
G Glyatl1 glycine-N-acyltransferase-like 1 JBrowse link 1 229,039,889 229,055,127 RGD:13792537
G Gnmt glycine N-methyltransferase JBrowse link 9 16,565,274 16,568,626 RGD:7242952
RGD:12793006
G Phgdh phosphoglycerate dehydrogenase JBrowse link 2 200,484,245 200,513,564 RGD:1624291
G Shmt1 serine hydroxymethyltransferase 1 JBrowse link 10 47,030,813 47,059,216 RGD:1359815
RGD:13792537
RGD:1624291
G Shmt2 serine hydroxymethyltransferase 2 JBrowse link 7 70,824,718 70,829,822 RGD:1359815
RGD:13792537
RGD:1624291
RGD:2300380
glycyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gars glycyl-tRNA synthetase JBrowse link 4 85,235,122 85,276,085 RGD:1624291
RGD:13792537
histidine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 JBrowse link 6 99,282,850 99,350,367 RGD:1600115
G Mthfd2l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like JBrowse link 14 18,640,274 18,721,298 RGD:1600115
histidine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Amdhd1 amidohydrolase domain containing 1 JBrowse link 7 34,362,635 34,406,282 RGD:13792537
G Hal histidine ammonia lyase JBrowse link 7 34,326,087 34,356,413 RGD:1624291
RGD:13792537
G Hdc histidine decarboxylase JBrowse link 3 119,057,524 119,075,599 RGD:1624291
RGD:13792537
RGD:1600115
G Uroc1 urocanate hydratase 1 JBrowse link 4 122,244,744 122,276,357 RGD:1624291
RGD:13792537
histidine catabolic process to glutamate and formamide term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Amdhd1 amidohydrolase domain containing 1 JBrowse link 7 34,362,635 34,406,282 RGD:1600115
G Ftcd formimidoyltransferase cyclodeaminase JBrowse link 20 12,806,957 12,820,466 RGD:1600115
G Hal histidine ammonia lyase JBrowse link 7 34,326,087 34,356,413 RGD:1600115
histidine catabolic process to glutamate and formate term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ftcd formimidoyltransferase cyclodeaminase JBrowse link 20 12,806,957 12,820,466 RGD:1600115
G Hal histidine ammonia lyase JBrowse link 7 34,326,087 34,356,413 RGD:1600115
histidine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hal histidine ammonia lyase JBrowse link 7 34,326,087 34,356,413 RGD:628345
G Hdc histidine decarboxylase JBrowse link 3 119,057,524 119,075,599 RGD:2303726
RGD:2303735
RGD:2303734
RGD:2303733
RGD:2303728
RGD:2303727
histidyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hars1 histidyl-tRNA synthetase 1 JBrowse link 18 29,611,545 29,629,087 RGD:1624291
RGD:13792537
G Hars2 histidyl-tRNA synthetase 2, mitochondrial JBrowse link 18 29,629,203 29,638,460 RGD:1624291
RGD:13792537
homocysteine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Blmh bleomycin hydrolase JBrowse link 10 63,197,367 63,240,447 RGD:13792537
G Cbs cystathionine beta synthase JBrowse link 20 10,361,987 10,386,663 RGD:1600115
RGD:1624291
G Mtrr 5-methyltetrahydrofolate-homocysteine methyltransferase reductase JBrowse link 1 37,743,089 37,774,485 RGD:1624291
homocysteine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cbs cystathionine beta synthase JBrowse link 20 10,361,987 10,386,663 RGD:634704
RGD:13792537
RGD:1624291
RGD:1359024
G Cps1 carbamoyl-phosphate synthase 1 JBrowse link 9 74,113,437 74,236,274 RGD:1624291
G Cth cystathionine gamma-lyase JBrowse link 2 264,266,959 264,293,040 RGD:1359024
G Dpep1 dipeptidase 1 JBrowse link 19 55,973,447 55,998,830 RGD:1624291
RGD:1600115
G Mmut methylmalonyl-CoA mutase JBrowse link 9 23,323,934 23,352,144 RGD:1624291
G Mthfr methylenetetrahydrofolate reductase JBrowse link 5 164,844,642 164,864,360 RGD:2317121
RGD:1624291
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase JBrowse link 17 66,210,444 66,295,014 RGD:1601423
RGD:7207080
G Mtrr 5-methyltetrahydrofolate-homocysteine methyltransferase reductase JBrowse link 1 37,743,089 37,774,485 RGD:1624291
RGD:13792537
G Nox4 NADPH oxidase 4 JBrowse link 1 150,796,359 150,976,186 RGD:1624291
hydroxylysine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Plod2 procollagen lysine, 2-oxoglutarate 5-dioxygenase 2 JBrowse link 8 99,977,334 100,059,736 RGD:1600115
RGD:1624291
G Plod3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 JBrowse link 12 22,716,421 22,726,982 RGD:1624291
isoleucine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ilvbl ilvB acetolactate synthase like JBrowse link 7 14,044,586 14,054,639 RGD:13792537
G Sds serine dehydratase JBrowse link 12 41,620,429 41,627,741 RGD:13792537
G Sdsl serine dehydratase-like JBrowse link 12 41,636,994 41,647,205 RGD:13792537
isoleucine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acat1 acetyl-CoA acetyltransferase 1 JBrowse link 8 58,166,990 58,195,884 RGD:1624291
G Bcat2 branched chain amino acid transaminase 2 JBrowse link 1 101,553,900 101,572,103 RGD:1582175
RGD:1600115
RGD:1624291
isoleucine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bcat2 branched chain amino acid transaminase 2 JBrowse link 1 101,553,900 101,572,103 RGD:1624291
isoleucyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Iars1 isoleucyl-tRNA synthetase 1 JBrowse link 17 15,356,016 15,402,680 RGD:1624291
RGD:13792537
G Iars2 isoleucyl-tRNA synthetase 2, mitochondrial JBrowse link 13 103,229,868 103,265,019 RGD:13792537
G LOC103690033 isoleucine--tRNA ligase, cytoplasmic-like JBrowse link 17 14,541,646 14,562,733 RGD:13792537
kynurenine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aadat aminoadipate aminotransferase JBrowse link 16 32,832,001 32,868,680 RGD:1624291
RGD:1600115
G Kmo kynurenine 3-monooxygenase JBrowse link 13 93,684,324 93,715,378 RGD:11342439
RGD:13792537
RGD:1624291
G Kyat1 kynurenine aminotransferase 1 JBrowse link 3 8,752,289 8,785,617 RGD:1624291
RGD:1600115
G Kyat3 kynurenine aminotransferase 3 JBrowse link 2 248,644,473 248,690,289 RGD:1624291
RGD:1600115
L-alanine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Agxt alanine--glyoxylate and serine--pyruvate aminotransferase JBrowse link 9 100,281,339 100,291,292 RGD:1624291
G Gpt glutamic--pyruvic transaminase JBrowse link 7 117,759,083 117,761,932 RGD:1600115
L-alanine catabolic process, by transamination term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Agxt2 alanine-glyoxylate aminotransferase 2 JBrowse link 2 60,337,667 60,379,144 RGD:1624291
RGD:13792537
L-alanine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gpt2 glutamic--pyruvic transaminase 2 JBrowse link 19 22,599,003 22,633,529 RGD:1624291
L-asparagine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Asns asparagine synthetase (glutamine-hydrolyzing) JBrowse link 4 33,742,876 33,761,106 RGD:1600115
L-asparagine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atf4 activating transcription factor 4 JBrowse link 7 121,480,723 121,482,781 RGD:1624291
L-cysteine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Agxt alanine--glyoxylate and serine--pyruvate aminotransferase JBrowse link 9 100,281,339 100,291,292 RGD:1624291
G Cbs cystathionine beta synthase JBrowse link 20 10,361,987 10,386,663 RGD:1624291
G Cdo1 cysteine dioxygenase type 1 JBrowse link 18 40,702,027 40,716,901 RGD:2301357
RGD:13792537
L-cysteine catabolic process to hypotaurine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Csad cysteine sulfinic acid decarboxylase JBrowse link 7 143,781,520 143,810,880 RGD:13800536
L-cysteine catabolic process to taurine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Csad cysteine sulfinic acid decarboxylase JBrowse link 7 143,781,520 143,810,880 RGD:13800536
L-cysteine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdo1 cysteine dioxygenase type 1 JBrowse link 18 40,702,027 40,716,901 RGD:632438
L-kynurenine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Kyat1 kynurenine aminotransferase 1 JBrowse link 3 8,752,289 8,785,617 RGD:1600115
G Kynu kynureninase JBrowse link 3 28,416,926 28,566,939 RGD:1600115
L-kynurenine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aadat aminoadipate aminotransferase JBrowse link 16 32,832,001 32,868,680 RGD:1600115
G Got2 glutamic-oxaloacetic transaminase 2 JBrowse link 19 9,587,637 9,613,323 RGD:1600115
G Kmo kynurenine 3-monooxygenase JBrowse link 13 93,684,324 93,715,378 RGD:13513904
G Kyat1 kynurenine aminotransferase 1 JBrowse link 3 8,752,289 8,785,617 RGD:9685040
RGD:1600115
G Kyat3 kynurenine aminotransferase 3 JBrowse link 2 248,644,473 248,690,289 RGD:1600115
L-lysine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aass aminoadipate-semialdehyde synthase JBrowse link 4 50,152,005 50,208,935 RGD:1624291
RGD:1600115
L-lysine catabolic process to acetyl-CoA via L-pipecolate term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pipox pipecolic acid and sarcosine oxidase JBrowse link 10 64,951,986 64,964,865 RGD:1624291
RGD:13792537
L-lysine catabolic process to acetyl-CoA via saccharopine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aadat aminoadipate aminotransferase JBrowse link 16 32,832,001 32,868,680 RGD:1600115
G Aass aminoadipate-semialdehyde synthase JBrowse link 4 50,152,005 50,208,935 RGD:1600115
G Dlst dihydrolipoamide S-succinyltransferase JBrowse link 6 108,936,534 108,961,322 RGD:1600115
L-methionine salvage term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bhmt betaine-homocysteine S-methyltransferase JBrowse link 2 23,236,573 23,256,158 RGD:1624291
RGD:1600115
G Bhmt2 betaine-homocysteine S-methyltransferase 2 JBrowse link 2 23,272,320 23,289,266 RGD:1624291
RGD:1600115
L-methionine salvage from methylthioadenosine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adi1 acireductone dioxygenase 1 JBrowse link 6 47,940,211 47,947,173 RGD:1600115
RGD:1624291
G Apip APAF1 interacting protein JBrowse link 3 92,969,128 92,998,104 RGD:1600115
RGD:13792537
RGD:1624291
G Enoph1 enolase-phosphatase 1 JBrowse link 14 11,172,359 11,198,799 RGD:1600115
RGD:13792537
RGD:1624291
G Mri1 methylthioribose-1-phosphate isomerase 1 JBrowse link 19 25,360,299 25,366,283 RGD:1600115
RGD:13792537
G Mtap methylthioadenosine phosphorylase JBrowse link 5 107,711,077 107,777,530 RGD:1600115
RGD:13792537
L-methionine salvage from S-adenosylmethionine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Apip APAF1 interacting protein JBrowse link 3 92,969,128 92,998,104 RGD:1600115
G Enoph1 enolase-phosphatase 1 JBrowse link 14 11,172,359 11,198,799 RGD:1600115
G Mri1 methylthioribose-1-phosphate isomerase 1 JBrowse link 19 25,360,299 25,366,283 RGD:1600115
L-phenylalanine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fah fumarylacetoacetate hydrolase JBrowse link 1 146,713,663 146,736,339 RGD:1600115
RGD:13792537
G Gstz1 glutathione S-transferase zeta 1 JBrowse link 6 111,176,798 111,187,246 RGD:1600115
RGD:13792537
G Hgd homogentisate 1, 2-dioxygenase JBrowse link 11 65,983,221 66,034,555 RGD:13792537
G Hpd 4-hydroxyphenylpyruvate dioxygenase JBrowse link 12 38,828,606 38,839,956 RGD:1600115
G Pah phenylalanine hydroxylase JBrowse link 7 28,066,639 28,129,772 RGD:1600115
G Qdpr quinoid dihydropteridine reductase JBrowse link 14 70,164,682 70,178,284 RGD:5128604
RGD:13792537
G Tat tyrosine aminotransferase JBrowse link 19 41,675,639 41,686,195 RGD:1600115
L-phenylalanine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pah phenylalanine hydroxylase JBrowse link 7 28,066,639 28,129,772 RGD:1601531
G Pcbd1 pterin-4 alpha-carbinolamine dehydratase 1 JBrowse link 20 30,689,690 30,696,465 RGD:12792994
G Spr sepiapterin reductase JBrowse link 4 116,912,343 116,916,073 RGD:1624291
L-proline biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aldh18a1 aldehyde dehydrogenase 18 family, member A1 JBrowse link 1 259,641,673 259,674,521 RGD:1600115
G LOC108348083 delta-1-pyrroline-5-carboxylate synthase JBrowse link 1 259,057,407 259,089,727 RGD:1600115
G Noxred1 NADP-dependent oxidoreductase domain containing 1 JBrowse link 6 111,243,232 111,271,107 RGD:13792537
G Oat ornithine aminotransferase JBrowse link 1 204,562,289 204,582,070 RGD:1600115
G Pycr1 pyrroline-5-carboxylate reductase 1 JBrowse link 10 109,817,300 109,822,218 RGD:1600115
RGD:13792537
G Pycr2 pyrroline-5-carboxylate reductase 2 JBrowse link 13 99,184,624 99,188,418 RGD:1600115
RGD:13792537
G Pycr3 pyrroline-5-carboxylate reductase 3 JBrowse link 7 116,949,882 116,955,150 RGD:1600115
RGD:13792537
RGD:1624291
L-serine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Phgdh phosphoglycerate dehydrogenase JBrowse link 2 200,484,245 200,513,564 RGD:1600115
G Psat1 phosphoserine aminotransferase 1 JBrowse link 1 233,124,089 233,145,941 RGD:13792537
G Psph phosphoserine phosphatase JBrowse link 12 30,514,128 30,526,551 RGD:13792537
G Shmt2 serine hydroxymethyltransferase 2 JBrowse link 7 70,824,718 70,829,822 RGD:2300380
L-serine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cbs cystathionine beta synthase JBrowse link 20 10,361,987 10,386,663 RGD:1624291
G Sds serine dehydratase JBrowse link 12 41,620,429 41,627,741 RGD:1600115
RGD:1624291
G Shmt1 serine hydroxymethyltransferase 1 JBrowse link 10 47,030,813 47,059,216 RGD:1624291
RGD:13792537
G Shmt2 serine hydroxymethyltransferase 2 JBrowse link 7 70,824,718 70,829,822 RGD:13792537
L-serine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cbs cystathionine beta synthase JBrowse link 20 10,361,987 10,386,663 RGD:1624291
RGD:1600115
G Phgdh phosphoglycerate dehydrogenase JBrowse link 2 200,484,245 200,513,564 RGD:1624291
G Psph phosphoserine phosphatase JBrowse link 12 30,514,128 30,526,551 RGD:1624291
RGD:1600115
G Shmt1 serine hydroxymethyltransferase 1 JBrowse link 10 47,030,813 47,059,216 RGD:1359815
RGD:1624291
G Shmt2 serine hydroxymethyltransferase 2 JBrowse link 7 70,824,718 70,829,822 RGD:1359815
RGD:1624291
G Srr serine racemase JBrowse link 10 61,756,138 61,772,327 RGD:8554326
RGD:13792537
RGD:1624291
leucine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bcat1 branched chain amino acid transaminase 1 JBrowse link 4 179,259,305 179,340,021 RGD:13792537
G Bcat2 branched chain amino acid transaminase 2 JBrowse link 1 101,553,900 101,572,103 RGD:1582175
RGD:13792537
leucine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Auh AU RNA binding methylglutaconyl-CoA hydratase JBrowse link 17 12,310,178 12,405,224 RGD:1600115
G Hmgcl 3-hydroxy-3-methylglutaryl-CoA lyase JBrowse link 5 154,294,841 154,308,582 RGD:13792537
G Hmgcll1 3-hydroxymethyl-3-methylglutaryl-CoA lyase-like 1 JBrowse link 8 83,069,837 83,204,778 RGD:13792537
G Ivd isovaleryl-CoA dehydrogenase JBrowse link 3 110,669,355 110,689,789 RGD:1600115
RGD:1624291
RGD:8554099
G Mccc1 methylcrotonoyl-CoA carboxylase 1 JBrowse link 2 122,550,777 122,690,540 RGD:1600115
G Mccc2 methylcrotonoyl-CoA carboxylase 2 JBrowse link 2 30,175,017 30,246,028 RGD:1600115
RGD:13792537
leucine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bcat2 branched chain amino acid transaminase 2 JBrowse link 1 101,553,900 101,572,103 RGD:1600115
RGD:1624291
G Dao D-amino-acid oxidase JBrowse link 12 48,353,691 48,373,647 RGD:1624291
G Ivd isovaleryl-CoA dehydrogenase JBrowse link 3 110,669,355 110,689,789 RGD:631718
leucyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lars1 leucyl-tRNA synthetase 1 JBrowse link 18 36,524,013 36,579,471 RGD:1624291
RGD:13792537
G Lars2 leucyl-tRNA synthetase 2, mitochondrial JBrowse link 8 132,441,277 132,537,176 RGD:1624291
RGD:13792537
lysine biosynthetic process via aminoadipic acid term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aasdhppt aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase JBrowse link 8 1,432,757 1,450,175 RGD:13792537
G Aass aminoadipate-semialdehyde synthase JBrowse link 4 50,152,005 50,208,935 RGD:13792537
lysyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Kars lysyl-tRNA synthetase JBrowse link 19 44,212,205 44,231,209 RGD:2303393
RGD:13792537
RGD:1624291
RGD:12911009
RGD:2303394
melanin biosynthetic process from tyrosine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dct dopachrome tautomerase JBrowse link 15 103,208,174 103,245,033 RGD:1624291
methionine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bhmt betaine-homocysteine S-methyltransferase JBrowse link 2 23,236,573 23,256,158 RGD:1359026
RGD:1624291
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 JBrowse link 6 99,282,850 99,350,367 RGD:1624291
G Mthfd2l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like JBrowse link 14 18,640,274 18,721,298 RGD:1600115
G Mthfr methylenetetrahydrofolate reductase JBrowse link 5 164,844,642 164,864,360 RGD:1624291
RGD:13792537
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase JBrowse link 17 66,210,444 66,295,014 RGD:1359026
RGD:1600115
RGD:1624291
RGD:1601423
G Mtrr 5-methyltetrahydrofolate-homocysteine methyltransferase reductase JBrowse link 1 37,743,089 37,774,485 RGD:1624291
RGD:13792537
methionine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mat1a methionine adenosyltransferase 1A JBrowse link 16 18,690,649 18,709,135 RGD:1600115
RGD:1624291
methionine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adi1 acireductone dioxygenase 1 JBrowse link 6 47,940,211 47,947,173 RGD:13792537
G Gnmt glycine N-methyltransferase JBrowse link 9 16,565,274 16,568,626 RGD:1624291
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 JBrowse link 6 99,282,850 99,350,367 RGD:1624291
G Mthfr methylenetetrahydrofolate reductase JBrowse link 5 164,844,642 164,864,360 RGD:1624291
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase JBrowse link 17 66,210,444 66,295,014 RGD:7207080
methionyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LOC100911305 methionine--tRNA ligase, mitochondrial-like JBrowse link 9 61,823,441 61,826,357 RGD:13792537
G Mars1 methionyl-tRNA synthetase 1 JBrowse link 7 70,585,011 70,602,425 RGD:1624291
G Mars2 methionyl-tRNA synthetase 2, mitochondrial JBrowse link 9 64,434,814 64,437,730 RGD:1624291
RGD:13792537
mitochondrial alanyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aars2 alanyl-tRNA synthetase 2, mitochondrial JBrowse link 9 17,869,301 17,881,762 RGD:1624291
RGD:1600115
mitochondrial asparaginyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dars2 aspartyl-tRNA synthetase 2 (mitochondrial) JBrowse link 13 78,857,638 78,885,464 RGD:1624291
RGD:1600115
mitochondrial glycyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gars glycyl-tRNA synthetase JBrowse link 4 85,235,122 85,276,085 RGD:13792537
mitochondrial seryl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sars2 seryl-tRNA synthetase 2, mitochondrial JBrowse link 1 86,923,769 86,935,506 RGD:13792537
mitochondrial tryptophanyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Wars2 tryptophanyl tRNA synthetase 2 (mitochondrial) JBrowse link 2 201,170,363 201,256,115 RGD:13792537
mitochondrial tyrosyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Yars2 tyrosyl-tRNA synthetase 2 JBrowse link 11 88,882,615 88,888,377 RGD:1624291
negative regulation of arginine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atp2b4 ATPase plasma membrane Ca2+ transporting 4 JBrowse link 13 50,091,644 50,153,808 RGD:1624291
negative regulation of citrulline biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atp2b4 ATPase plasma membrane Ca2+ transporting 4 JBrowse link 13 50,091,644 50,153,808 RGD:1624291
negative regulation of glutamate metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atcay ATCAY kinesin light chain interacting caytaxin JBrowse link 7 11,356,017 11,379,782 RGD:1624291
RGD:1600115
ornithine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aldh18a1 aldehyde dehydrogenase 18 family, member A1 JBrowse link 1 259,641,673 259,674,521 RGD:1624291
ornithine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Otc ornithine carbamoyltransferase JBrowse link X 13,524,804 13,601,074 RGD:1624291
ornithine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Azin2 antizyme inhibitor 2 JBrowse link 5 147,120,128 147,148,576 RGD:1624291
RGD:1600115
G Hnf4a hepatocyte nuclear factor 4, alpha JBrowse link 3 159,902,441 159,965,003 RGD:1624291
RGD:1600115
G Oat ornithine aminotransferase JBrowse link 1 204,562,289 204,582,070 RGD:1358311
G Otc ornithine carbamoyltransferase JBrowse link X 13,524,804 13,601,074 RGD:2300098
phenylalanyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fars2 phenylalanyl-tRNA synthetase 2, mitochondrial JBrowse link 17 29,006,981 29,438,906 RGD:1600115
RGD:13792537
RGD:1624291
G Farsa phenylalanyl-tRNA synthetase subunit alpha JBrowse link 19 25,969,255 25,978,777 RGD:1624291
RGD:13792537
RGD:1600115
G Farsb phenylalanyl-tRNA synthetase subunit beta JBrowse link 9 84,324,456 84,383,674 RGD:1624291
RGD:13792537
positive regulation of ammonia assimilation cycle term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nr1h4 nuclear receptor subfamily 1, group H, member 4 JBrowse link 7 30,003,429 30,162,095 RGD:1624291
RGD:1600115
positive regulation of glutamate metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nr1h4 nuclear receptor subfamily 1, group H, member 4 JBrowse link 7 30,003,429 30,162,095 RGD:1624291
positive regulation of homocysteine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Comt catechol-O-methyltransferase JBrowse link 11 86,715,981 86,735,630 RGD:2289784
positive regulation of L-dopa biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Park7 Parkinsonism associated deglycase JBrowse link 5 167,982,438 168,004,724 RGD:1624291
RGD:1600115
prenylcysteine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pcyox1 prenylcysteine oxidase 1 JBrowse link 4 118,187,133 118,198,029 RGD:1624291
G Pcyox1l prenylcysteine oxidase 1 like JBrowse link 18 57,021,081 57,031,552 RGD:1600115
proline biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aldh18a1 aldehyde dehydrogenase 18 family, member A1 JBrowse link 1 259,641,673 259,674,521 RGD:1624291
G Pycr1 pyrroline-5-carboxylate reductase 1 JBrowse link 10 109,817,300 109,822,218 RGD:1624291
G Pycr2 pyrroline-5-carboxylate reductase 2 JBrowse link 13 99,184,624 99,188,418 RGD:1624291
RGD:1600115
proline catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dao D-amino-acid oxidase JBrowse link 12 48,353,691 48,373,647 RGD:1600115
RGD:13792537
RGD:1624291
G Prodh2 proline dehydrogenase 2 JBrowse link 1 88,955,125 88,968,501 RGD:1600115
proline catabolic process to glutamate term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aldh4a1 aldehyde dehydrogenase 4 family, member A1 JBrowse link 5 158,090,238 158,115,725 RGD:1600115
G Iffo2 intermediate filament family orphan 2 JBrowse link 5 158,042,587 158,083,311 RGD:1600115
G Prodh1 proline dehydrogenase 1 JBrowse link 11 87,058,478 87,075,785 RGD:13792537
G Prodh2 proline dehydrogenase 2 JBrowse link 1 88,955,125 88,968,501 RGD:13792537
G Tas1r2 taste 1 receptor member 2 JBrowse link 5 158,119,894 158,135,733 RGD:1600115
prolyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07062535.1 RGD:13792537
G Eprs glutamyl-prolyl-tRNA synthetase JBrowse link 13 103,300,911 103,371,651 RGD:1624291
RGD:13792537
G Pars2 prolyl-tRNA synthetase 2, mitochondrial JBrowse link 5 126,254,090 126,259,204 RGD:13792537
putrescine biosynthetic process from arginine, using agmatinase term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Agmat agmatinase JBrowse link 5 160,306,754 160,321,951 RGD:13792537
putrescine biosynthetic process from ornithine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Azin1 antizyme inhibitor 1 JBrowse link 7 77,345,646 77,372,398 RGD:13792537
G Azin2 antizyme inhibitor 2 JBrowse link 5 147,120,128 147,148,576 RGD:13792537
G Odc1 ornithine decarboxylase 1 JBrowse link 6 42,852,529 42,859,142 RGD:1600115
RGD:13792537
RGD:1624291
G RGD1562036 similar to ornithine decarboxylase JBrowse link 5 148,432,213 148,444,188 RGD:13792537
regulation of arginine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin JBrowse link 1 197,986,384 197,999,726 RGD:1624291
regulation of arginine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fh fumarate hydratase JBrowse link 13 93,651,486 93,677,371 RGD:1600115
RGD:1624291
G Slc7a7 solute carrier family 7 member 7 JBrowse link 15 33,013,346 33,059,733 RGD:1624291
RGD:13792537
regulation of cellular amino acid metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ins2 insulin 2 JBrowse link 1 215,856,967 215,858,034 RGD:1624291
regulation of cysteine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Slc7a11 solute carrier family 7 member 11 JBrowse link 2 139,453,774 139,528,479 RGD:1624291
regulation of glutamate metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Apc APC regulator of WNT signaling pathway JBrowse link 18 27,011,710 27,106,323 RGD:6484536
G Slc7a11 solute carrier family 7 member 11 JBrowse link 2 139,453,774 139,528,479 RGD:1624291
regulation of glutamine family amino acid metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sirt4 sirtuin 4 JBrowse link 12 46,862,358 46,876,593 RGD:1624291
regulation of sulfur amino acid metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cacna1a calcium voltage-gated channel subunit alpha1 A JBrowse link 19 25,453,236 25,749,550 RGD:1624291
RGD:1600115
S-adenosylhomocysteine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ahcy adenosylhomocysteinase JBrowse link 3 150,587,833 150,603,057 RGD:730275
RGD:1624291
S-adenosylhomocysteine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Comt catechol-O-methyltransferase JBrowse link 11 86,715,981 86,735,630 RGD:1359089
G Gamt guanidinoacetate N-methyltransferase JBrowse link 7 12,314,848 12,317,998 RGD:1359081
G Gnmt glycine N-methyltransferase JBrowse link 9 16,565,274 16,568,626 RGD:1359070
RGD:13792537
RGD:12793006
G Icmt isoprenylcysteine carboxyl methyltransferase JBrowse link 5 169,475,270 169,482,031 RGD:2289655
G LOC100911564 glycine N-methyltransferase-like JBrowse link 9 16,314,136 16,317,575 RGD:13792537
G Pcmt1 protein-L-isoaspartate (D-aspartate) O-methyltransferase 1 JBrowse link 1 1,734,863 1,767,759 RGD:729481
G Pemt phosphatidylethanolamine N-methyltransferase JBrowse link 10 46,339,821 46,404,640 RGD:729486
G Pnmt phenylethanolamine-N-methyltransferase JBrowse link 10 86,340,893 86,342,501 RGD:1359087
sarcosine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sardh sarcosine dehydrogenase JBrowse link 3 5,737,203 5,802,153 RGD:13792537
sarcosine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gnmt glycine N-methyltransferase JBrowse link 9 16,565,274 16,568,626 RGD:7242952
RGD:13792537
G LOC100911564 glycine N-methyltransferase-like JBrowse link 9 16,314,136 16,317,575 RGD:13792537
selenocysteine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sephs1 selenophosphate synthetase 1 JBrowse link 17 77,312,562 77,340,934 RGD:13792537
G Sephs2 selenophosphate synthetase 2 JBrowse link 1 198,719,158 198,721,476 RGD:1624291
selenocysteine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Scly selenocysteine lyase JBrowse link 9 98,438,408 98,459,075 RGD:12793035
selenocysteine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Txnrd1 thioredoxin reductase 1 JBrowse link 7 26,946,124 26,984,400 RGD:634379
serine family amino acid biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 JBrowse link 6 99,282,850 99,350,367 RGD:1624291
G Phgdh phosphoglycerate dehydrogenase JBrowse link 2 200,484,245 200,513,564 RGD:61693
serine family amino acid catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Thnsl2 threonine synthase-like 2 JBrowse link 4 98,976,559 98,997,187 RGD:1624291
RGD:13792537
serine family amino acid metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 JBrowse link 6 99,282,850 99,350,367 RGD:1624291
G Srr serine racemase JBrowse link 10 61,756,138 61,772,327 RGD:1624291
serotonin biosynthetic process from tryptophan term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cyp2d4 cytochrome P450, family 2, subfamily d, polypeptide 4 JBrowse link 7 123,599,264 123,608,436 RGD:11353778
G Tph1 tryptophan hydroxylase 1 JBrowse link 1 102,669,868 102,699,442 RGD:625621
seryl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sars1 seryl-tRNA synthetase 1 JBrowse link 2 211,219,743 211,235,475 RGD:1600115
RGD:13792537
RGD:1624291
G Sars2 seryl-tRNA synthetase 2, mitochondrial JBrowse link 1 86,923,769 86,935,506 RGD:13792537
threonine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Thnsl2 threonine synthase-like 2 JBrowse link 4 98,976,559 98,997,187 RGD:1624291
threonine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gcat glycine C-acetyltransferase JBrowse link 7 120,263,068 120,269,365 RGD:1600115
G LOC688286 similar to threonine aldolase 1 JBrowse link 10 106,877,585 106,883,706 RGD:13792537
G Sds serine dehydratase JBrowse link 12 41,620,429 41,627,741 RGD:13792537
G Sdsl serine dehydratase-like JBrowse link 12 41,636,994 41,647,205 RGD:13792537
G Tdh L-threonine dehydrogenase JBrowse link 15 46,667,926 46,682,752 RGD:1624291
RGD:13792537
threonine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Phgdh phosphoglycerate dehydrogenase JBrowse link 2 200,484,245 200,513,564 RGD:1624291
G Sds serine dehydratase JBrowse link 12 41,620,429 41,627,741 RGD:13792537
G Sdsl serine dehydratase-like JBrowse link 12 41,636,994 41,647,205 RGD:13792537
threonyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tars1 threonyl-tRNA synthetase 1 JBrowse link 2 61,394,632 61,414,115 RGD:1600115
RGD:13792537
RGD:1624291
G Tars2 threonyl-tRNA synthetase 2, mitochondrial JBrowse link 2 197,861,071 197,881,347 RGD:13792537
G Tars3 threonyl-tRNA synthetase 3 JBrowse link 1 126,523,169 126,559,493 RGD:1624291
RGD:13792537
transsulfuration term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cbs cystathionine beta synthase JBrowse link 20 10,361,987 10,386,663 RGD:1600624
RGD:13792537
G Cth cystathionine gamma-lyase JBrowse link 2 264,266,959 264,293,040 RGD:1600762
RGD:13792537
RGD:1600115
RGD:1624291
G LOC103691744 cystathionine gamma-lyase JBrowse link 2 264,747,068 264,765,112 RGD:1600115
G Mpst mercaptopyruvate sulfurtransferase JBrowse link 7 119,626,636 119,631,317 RGD:9685559
RGD:13792537
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 JBrowse link 6 99,282,850 99,350,367 RGD:1624291
G Tst thiosulfate sulfurtransferase JBrowse link 7 119,616,323 119,623,072 RGD:13792537
tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dars2 aspartyl-tRNA synthetase 2 (mitochondrial) JBrowse link 13 78,857,638 78,885,464 RGD:1624291
G Yars2 tyrosyl-tRNA synthetase 2 JBrowse link 11 88,882,615 88,888,377 RGD:1624291
RGD:13792537
tRNA aminoacylation for mitochondrial protein translation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ears2 glutamyl-tRNA synthetase 2, mitochondrial JBrowse link 1 191,997,512 192,025,350 RGD:1624291
tRNA aminoacylation for protein translation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gars glycyl-tRNA synthetase JBrowse link 4 85,235,122 85,276,085 RGD:1624291
RGD:1600115
G LOC317588 hypothetical protein LOC317588 JBrowse link X 137,934,296 137,952,151 RGD:1600115
G Mars1 methionyl-tRNA synthetase 1 JBrowse link 7 70,585,011 70,602,425 RGD:13792537
G Nars2 asparaginyl-tRNA synthetase 2, mitochondrial JBrowse link 1 161,922,132 162,035,817 RGD:1600115
G Tars1 threonyl-tRNA synthetase 1 JBrowse link 2 61,394,632 61,414,115 RGD:13792537
G Tars2 threonyl-tRNA synthetase 2, mitochondrial JBrowse link 2 197,861,071 197,881,347 RGD:13792537
G Tars3 threonyl-tRNA synthetase 3 JBrowse link 1 126,523,169 126,559,493 RGD:13792537
G Vars1 valyl-tRNA synthetase 1 JBrowse link 20 4,993,539 5,008,259 RGD:13792537
G Vars2 valyl-tRNA synthetase 2, mitochondrial JBrowse link 20 3,588,462 3,599,514 RGD:13792537
tryptophan catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acmsd aminocarboxymuconate semialdehyde decarboxylase JBrowse link 13 44,424,689 44,468,734 RGD:70243
G Haao 3-hydroxyanthranilate 3,4-dioxygenase JBrowse link 6 7,045,145 7,059,227 RGD:1600115
G Kmo kynurenine 3-monooxygenase JBrowse link 13 93,684,324 93,715,378 RGD:1600115
G Kynu kynureninase JBrowse link 3 28,416,926 28,566,939 RGD:1624291
tryptophan catabolic process to acetyl-CoA term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Kynu kynureninase JBrowse link 3 28,416,926 28,566,939 RGD:2303721
G Tdo2 tryptophan 2,3-dioxygenase JBrowse link 2 180,897,059 180,914,919 RGD:2303721
RGD:13792537
tryptophan catabolic process to kynurenine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Afmid arylformamidase JBrowse link 10 106,828,963 106,844,314 RGD:1624291
RGD:13792537
RGD:1600115
G Ido1 indoleamine 2,3-dioxygenase 1 JBrowse link 16 72,216,326 72,228,098 RGD:2290190
RGD:13792537
RGD:1624291
RGD:1600115
RGD:2290543
G Ido2 indoleamine 2,3-dioxygenase 2 JBrowse link 16 72,232,852 72,291,227 RGD:1600115
RGD:13792537
RGD:1624291
G Kynu kynureninase JBrowse link 3 28,416,926 28,566,939 RGD:13792537
G Tdo2 tryptophan 2,3-dioxygenase JBrowse link 2 180,897,059 180,914,919 RGD:1600115
RGD:1624291
tryptophan metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atp7a ATPase copper transporting alpha JBrowse link X 77,076,085 77,193,644 RGD:1624291
G Tdo2 tryptophan 2,3-dioxygenase JBrowse link 2 180,897,059 180,914,919 RGD:2290190
RGD:2291804
RGD:2290313
tryptophanyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Wars1 tryptophanyl-tRNA synthetase 1 JBrowse link 6 132,771,026 132,802,262 RGD:1600115
RGD:13792537
RGD:1624291
G Wars2 tryptophanyl tRNA synthetase 2 (mitochondrial) JBrowse link 2 201,170,363 201,256,115 RGD:13792537
tyrosine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pah phenylalanine hydroxylase JBrowse link 7 28,066,639 28,129,772 RGD:1601531
RGD:13792537
tyrosine biosynthetic process, by oxidation of phenylalanine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pah phenylalanine hydroxylase JBrowse link 7 28,066,639 28,129,772 RGD:1601535
tyrosine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fah fumarylacetoacetate hydrolase JBrowse link 1 146,713,663 146,736,339 RGD:13792537
RGD:1600115
G Gstz1 glutathione S-transferase zeta 1 JBrowse link 6 111,176,798 111,187,246 RGD:1600115
G Hpd 4-hydroxyphenylpyruvate dioxygenase JBrowse link 12 38,828,606 38,839,956 RGD:632936
RGD:13792537
RGD:8554707
G Hpdl 4-hydroxyphenylpyruvate dioxygenase-like JBrowse link 5 135,675,826 135,677,432 RGD:13792537
G Tat tyrosine aminotransferase JBrowse link 19 41,675,639 41,686,195 RGD:1624291
RGD:1600115
tyrosine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atp7a ATPase copper transporting alpha JBrowse link X 77,076,085 77,193,644 RGD:1624291
G Hgd homogentisate 1, 2-dioxygenase JBrowse link 11 65,983,221 66,034,555 RGD:1600115
G Iyd iodotyrosine deiodinase JBrowse link 1 40,086,513 40,100,966 RGD:1624291
RGD:13792537
RGD:1600115
G Thap4 THAP domain containing 4 JBrowse link 9 100,848,597 100,888,107 RGD:1624291
RGD:1600115
tyrosyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Yars1 tyrosyl-tRNA synthetase 1 JBrowse link 5 147,375,350 147,403,578 RGD:1600115
valine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bcat1 branched chain amino acid transaminase 1 JBrowse link 4 179,259,305 179,340,021 RGD:13792537
G Bcat2 branched chain amino acid transaminase 2 JBrowse link 1 101,553,900 101,572,103 RGD:13792537
G Ilvbl ilvB acetolactate synthase like JBrowse link 7 14,044,586 14,054,639 RGD:13792537
valine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aldh6a1 aldehyde dehydrogenase 6 family, member A1 JBrowse link 6 108,146,552 108,167,185 RGD:1599052
RGD:13792537
RGD:1600115
RGD:1624291
G Hibadh 3-hydroxyisobutyrate dehydrogenase JBrowse link 4 82,604,369 82,702,429 RGD:1600115
RGD:13792537
RGD:1624291
G Hibch 3-hydroxyisobutyryl-CoA hydrolase JBrowse link 9 53,446,185 53,526,727 RGD:1600115
RGD:13792537
valine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aldh6a1 aldehyde dehydrogenase 6 family, member A1 JBrowse link 6 108,146,552 108,167,185 RGD:1599052
RGD:13792537
G Bcat2 branched chain amino acid transaminase 2 JBrowse link 1 101,553,900 101,572,103 RGD:1600115
RGD:1624291
valyl-tRNA aminoacylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Vars1 valyl-tRNA synthetase 1 JBrowse link 20 4,993,539 5,008,259 RGD:13792537
G Vars2 valyl-tRNA synthetase 2, mitochondrial JBrowse link 20 3,588,462 3,599,514 RGD:1600115
RGD:13792537

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19678
    metabolic process 11954
      primary metabolic process 10613
        cellular amino acid metabolic process 272
          alpha-amino acid metabolic process + 197
          amino acid activation + 49
          aromatic amino acid family metabolic process + 34
          beta-alanine metabolic process + 5
          branched-chain amino acid metabolic process + 20
          cellular amino acid biosynthetic process + 70
          cellular amino acid catabolic process + 104
          chiral amino acid racemization + 0
          cyanoamino acid metabolic process + 0
          diaminopimelate metabolic process + 0
          fructoseglycine metabolic process 0
          fructoselysine metabolic process + 0
          gamma-aminobutyric acid metabolic process + 5
          negative regulation of cellular amino acid metabolic process + 2
          positive regulation of cellular amino acid metabolic process + 3
          regulation of cellular amino acid metabolic process + 13
          sulfur amino acid metabolic process + 35
Path 2
Term Annotations click to browse term
  biological_process 19678
    metabolic process 11954
      cellular metabolic process 10782
        organic acid metabolic process 1068
          oxoacid metabolic process 1041
            carboxylic acid metabolic process 993
              cellular amino acid metabolic process 272
                alpha-amino acid metabolic process + 197
                amino acid activation + 49
                aromatic amino acid family metabolic process + 34
                beta-alanine metabolic process + 5
                branched-chain amino acid metabolic process + 20
                cellular amino acid biosynthetic process + 70
                cellular amino acid catabolic process + 104
                chiral amino acid racemization + 0
                cyanoamino acid metabolic process + 0
                diaminopimelate metabolic process + 0
                fructoseglycine metabolic process 0
                fructoselysine metabolic process + 0
                gamma-aminobutyric acid metabolic process + 5
                negative regulation of cellular amino acid metabolic process + 2
                positive regulation of cellular amino acid metabolic process + 3
                regulation of cellular amino acid metabolic process + 13
                sulfur amino acid metabolic process + 35
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.