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ONTOLOGY REPORT - ANNOTATIONS


Term:L-serine metabolic process
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Accession:GO:0006563 term browser browse the term
Definition:The chemical reactions and pathways involving L-serine, the L-enantiomer of serine, i.e. (2S)-2-amino-3-hydroxypropanoic acid.
Synonyms:exact_synonym: L-serine metabolism
 xref: MIPS_funcat:01.01.09.02;   MIPS_funcat:01.01.11.07


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L-serine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cbs cystathionine beta synthase JBrowse link 20 10,361,987 10,386,663 RGD:1624291
RGD:1600115
G Phgdh phosphoglycerate dehydrogenase JBrowse link 2 200,484,245 200,513,564 RGD:1624291
G Psph phosphoserine phosphatase JBrowse link 12 30,514,128 30,526,551 RGD:1624291
RGD:1600115
G Shmt1 serine hydroxymethyltransferase 1 JBrowse link 10 47,030,813 47,059,216 RGD:1359815
RGD:1624291
G Shmt2 serine hydroxymethyltransferase 2 JBrowse link 7 70,824,718 70,829,822 RGD:1359815
RGD:1624291
G Srr serine racemase JBrowse link 10 61,756,138 61,772,327 RGD:8554326
RGD:13792537
RGD:1624291
cysteine biosynthetic process from serine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cbs cystathionine beta synthase JBrowse link 20 10,361,987 10,386,663 RGD:1359024
RGD:13792537
glycine biosynthetic process from serine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Shmt1 serine hydroxymethyltransferase 1 JBrowse link 10 47,030,813 47,059,216 RGD:2300383
RGD:13792537
G Shmt2 serine hydroxymethyltransferase 2 JBrowse link 7 70,824,718 70,829,822 RGD:2300383
RGD:13792537
L-serine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Phgdh phosphoglycerate dehydrogenase JBrowse link 2 200,484,245 200,513,564 RGD:1600115
G Psat1 phosphoserine aminotransferase 1 JBrowse link 1 233,124,089 233,145,941 RGD:13792537
G Psph phosphoserine phosphatase JBrowse link 12 30,514,128 30,526,551 RGD:13792537
G Shmt2 serine hydroxymethyltransferase 2 JBrowse link 7 70,824,718 70,829,822 RGD:2300380
L-serine catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cbs cystathionine beta synthase JBrowse link 20 10,361,987 10,386,663 RGD:1624291
G Sds serine dehydratase JBrowse link 12 41,620,429 41,627,741 RGD:1600115
RGD:13792537
RGD:1624291
G Sdsl serine dehydratase-like JBrowse link 12 41,636,994 41,647,205 RGD:13792537
G Shmt1 serine hydroxymethyltransferase 1 JBrowse link 10 47,030,813 47,059,216 RGD:1624291
RGD:13792537
G Shmt2 serine hydroxymethyltransferase 2 JBrowse link 7 70,824,718 70,829,822 RGD:13792537

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19334
    metabolic process 11555
      primary metabolic process 10411
        cellular amino acid metabolic process 266
          alpha-amino acid metabolic process 192
            serine family amino acid metabolic process 39
              L-serine metabolic process 9
                L-serine biosynthetic process 4
                L-serine catabolic process 5
                cysteine biosynthetic process from serine 1
                glycine biosynthetic process from serine 2
Path 2
Term Annotations click to browse term
  biological_process 19334
    metabolic process 11555
      cellular metabolic process 10567
        organic acid metabolic process 1030
          oxoacid metabolic process 1004
            carboxylic acid metabolic process 959
              cellular amino acid metabolic process 266
                alpha-amino acid metabolic process 192
                  serine family amino acid metabolic process 39
                    L-serine metabolic process 9
                      L-serine biosynthetic process 4
                      L-serine catabolic process 5
                      cysteine biosynthetic process from serine 1
                      glycine biosynthetic process from serine 2
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.