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ONTOLOGY REPORT - ANNOTATIONS


Term:amino-acid betaine biosynthetic process
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Accession:GO:0006578 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of any betaine, the N-trimethyl derivative of an amino acid.
Synonyms:exact_synonym: betaine anabolism;   betaine biosynthesis;   betaine biosynthetic process;   betaine formation;   betaine synthesis


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carnitine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acadm acyl-Coenzyme A dehydrogenase, medium chain ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 3:153,922,353...153,944,643
Ensembl chr 3:153,922,357...153,944,632
JBrowse link
G Bbox1 butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase) ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr 2:110,264,056...110,314,813
Ensembl chr 2:110,262,697...110,314,560
JBrowse link
G Tmlhe trimethyllysine hydroxylase, epsilon IDA
ISO
IBA
(MGI:MGI:2183690|PMID:12121276)
(MGI:MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:12121276, PMID:21873635 GO_REF:0000096, MGI:MGI:2183690, MGI:MGI:4834177, MGI:MGI:6201960
glycine betaine biosynthetic process from choline term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chdh choline dehydrogenase IEA UniProtKB GO_REF:0000002, MGI:MGI:2152098 NCBI chr14:30,008,901...30,040,468
Ensembl chr14:30,009,023...30,040,527
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 23360
    metabolic process 11269
      cellular metabolic process 10049
        cellular modified amino acid metabolic process 171
          amino-acid betaine metabolic process 17
            amino-acid betaine biosynthetic process 4
              N-alpha,N-alpha,N-alpha-trimethyl-L-histidine biosynthetic process + 0
              carnitine biosynthetic process 3
              ergothioneine biosynthetic process + 0
              glycine betaine biosynthetic process + 1
              selenoneine biosynthetic process 0
              stachydrine biosynthetic process 0
Path 2
Term Annotations click to browse term
  biological_process 23360
    metabolic process 11269
      biosynthetic process 5608
        organic substance biosynthetic process 5503
          organonitrogen compound biosynthetic process 1521
            cellular modified amino acid biosynthetic process 39
              amino-acid betaine biosynthetic process 4
                N-alpha,N-alpha,N-alpha-trimethyl-L-histidine biosynthetic process + 0
                carnitine biosynthetic process 3
                ergothioneine biosynthetic process + 0
                glycine betaine biosynthetic process + 1
                selenoneine biosynthetic process 0
                stachydrine biosynthetic process 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.