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ONTOLOGY REPORT - ANNOTATIONS


Term:ATP biosynthetic process
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Accession:GO:0006754 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Synonyms:exact_synonym: ATP anabolism;   ATP biosynthesis;   ATP formation;   ATP synthesis
 narrow_synonym: ATP regeneration
 alt_id: GO:0006758;   GO:0006759


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ATP biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aldoa aldolase, fructose-bisphosphate A JBrowse link 1 198,228,387 198,233,988 RGD:1624291
G Atp5f1a ATP synthase F1 subunit alpha JBrowse link 18 74,156,553 74,164,490 RGD:1624291
G Atp5f1b ATP synthase F1 subunit beta JBrowse link 7 2,504,708 2,511,748 RGD:1624291
G Atp5f1c ATP synthase F1 subunit gamma JBrowse link 17 72,209,321 72,231,562 RGD:13792537
G Atp5f1d ATP synthase F1 subunit delta JBrowse link 7 12,426,807 12,432,120 RGD:724594
G Atp5mc1 ATP synthase membrane subunit c locus 1 JBrowse link 10 83,895,941 83,898,640 RGD:13800744
G Atp5po ATP synthase peripheral stalk subunit OSCP JBrowse link 11 32,081,606 32,087,918 RGD:14696824
G Dguok deoxyguanosine kinase JBrowse link 4 115,180,433 115,208,061 RGD:15039296
G Dmac2l distal membrane arm assembly complex 2 like JBrowse link 6 92,057,782 92,076,022 RGD:1600115
G Ldhc lactate dehydrogenase C JBrowse link 1 102,914,875 102,931,843 RGD:1624291
RGD:1600115
G LOC686324 similar to Protein UNQ655/PRO1286 homolog precursor RGD:1600115
G Pklr pyruvate kinase L/R JBrowse link 2 188,449,158 188,458,034 RGD:2302789
RGD:2302790
G Pkm pyruvate kinase M1/2 JBrowse link 8 64,480,963 64,502,957 RGD:2302790
G Slc25a13 solute carrier family 25 member 13 JBrowse link 4 31,134,165 31,757,006 RGD:1624291
G Tgfb1 transforming growth factor, beta 1 JBrowse link 1 82,480,875 82,497,196 RGD:1624291
RGD:1600115
G Uqcc3 ubiquinol-cytochrome c reductase complex assembly factor 3 JBrowse link 1 225,076,301 225,077,079 RGD:1600115
AMP phosphorylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ak3 adenylate kinase 3 JBrowse link 1 247,144,486 247,169,690 RGD:2301093
G Ak9 adenylate kinase 9 JBrowse link 20 46,044,901 46,162,015 RGD:1624291
RGD:13792537
ATP synthesis coupled proton transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07064224.1 RGD:1600115
G AC105515.1 RGD:1600115
G Atp5f1a ATP synthase F1 subunit alpha JBrowse link 18 74,156,553 74,164,490 RGD:1600115
RGD:13792537
G Atp5f1c ATP synthase F1 subunit gamma JBrowse link 17 72,209,321 72,231,562 RGD:1600115
RGD:13792537
G Atp5f1d ATP synthase F1 subunit delta JBrowse link 7 12,426,807 12,432,120 RGD:724594
RGD:13792537
RGD:1600115
G Atp5mc1 ATP synthase membrane subunit c locus 1 JBrowse link 10 83,895,941 83,898,640 RGD:13792537
G Atp5mc2 ATP synthase membrane subunit c locus 2 JBrowse link 7 144,264,207 144,272,578 RGD:1600115
RGD:13792537
G Atp5mc3 ATP synthase membrane subunit c locus 3 JBrowse link 3 60,811,218 60,813,903 RGD:1600115
RGD:13792537
G Atp5mg ATP synthase membrane subunit g JBrowse link 8 49,220,441 49,227,273 RGD:13792537
G Atp5pb ATP synthase peripheral stalk-membrane subunit b JBrowse link 2 208,566,385 208,577,147 RGD:13792537
G Atp5pd ATP synthase peripheral stalk subunit d JBrowse link 10 103,967,340 103,972,552 RGD:13792537
G LOC100911417 ATP synthase subunit b, mitochondrial-like JBrowse link 2 208,408,890 208,420,159 RGD:13792537
G LOC500350 LRRGT00139 JBrowse link 4 170,347,410 170,382,370 RGD:13792537
G Mt-atp6 mitochondrially encoded ATP synthase membrane subunit 6 JBrowse link MT 7,919 8,599 RGD:13792537
G Taf3 TATA-box binding protein associated factor 3 JBrowse link 17 72,240,785 72,393,448 RGD:1600115
mitochondrial ATP synthesis coupled proton transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AC096404.1 RGD:13792537
G Atp5f1a ATP synthase F1 subunit alpha JBrowse link 18 74,156,553 74,164,490 RGD:1624291
G Atp5f1b ATP synthase F1 subunit beta JBrowse link 7 2,504,708 2,511,748 RGD:13792537
RGD:1624291
RGD:1600115
G Atp5f1c ATP synthase F1 subunit gamma JBrowse link 17 72,209,321 72,231,562 RGD:1624291
G Atp5f1d ATP synthase F1 subunit delta JBrowse link 7 12,426,807 12,432,120 RGD:1600115
RGD:1624291
G Atp5f1e ATP synthase F1 subunit epsilon JBrowse link 3 172,563,105 172,566,007 RGD:1624291
G Atp5me ATP synthase membrane subunit e JBrowse link 14 2,325,308 2,326,436 RGD:1624291
G Atp5mf ATP synthase membrane subunit f JBrowse link 12 11,191,799 11,198,369 RGD:1624291
G Atp5mg ATP synthase membrane subunit g JBrowse link 8 49,220,441 49,227,273 RGD:1624291
G Atp5pb ATP synthase peripheral stalk-membrane subunit b JBrowse link 2 208,566,385 208,577,147 RGD:1624291
G Atp5pd ATP synthase peripheral stalk subunit d JBrowse link 10 103,967,340 103,972,552 RGD:1624291
G Atp5pf ATP synthase peripheral stalk subunit F6 JBrowse link 11 24,286,806 24,294,419 RGD:1624291
G Atp5po ATP synthase peripheral stalk subunit OSCP JBrowse link 11 32,081,606 32,087,918 RGD:1624291
G Cox5b cytochrome c oxidase subunit 5B JBrowse link 9 43,259,706 43,262,039 RGD:13792537
G Cyc1 cytochrome c-1 JBrowse link 7 117,409,576 117,411,953 RGD:13792537
G Mt-atp6 mitochondrially encoded ATP synthase membrane subunit 6 JBrowse link MT 7,919 8,599 RGD:1624291
G Mt-atp8 mitochondrially encoded ATP synthase membrane subunit 8 JBrowse link MT 7,758 7,961 RGD:1624291
G Stoml2 stomatin like 2 JBrowse link 5 58,472,561 58,476,158 RGD:1624291
RGD:1600115
negative regulation of ATP biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Entpd1 ectonucleoside triphosphate diphosphohydrolase 1 JBrowse link 1 259,692,020 259,818,922 RGD:9685453
G Flcn folliculin JBrowse link 10 46,153,185 46,172,331 RGD:1624291
RGD:1600115
G Parp1 poly (ADP-ribose) polymerase 1 JBrowse link 13 98,857,255 98,889,444 RGD:1624291
G Pid1 phosphotyrosine interaction domain containing 1 JBrowse link 9 91,667,748 91,683,468 RGD:1624291
positive regulation of ATP biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bcl2l1 Bcl2-like 1 JBrowse link 3 148,259,594 148,314,191 RGD:12793033
G Eno1 enolase 1 JBrowse link 5 167,288,223 167,299,610 RGD:1624291
G Il4 interleukin 4 JBrowse link 10 38,963,979 38,969,531 RGD:1624291
G Map2k1 mitogen activated protein kinase kinase 1 JBrowse link 8 69,134,218 69,722,573 RGD:12793039
G Mt-co2 mitochondrially encoded cytochrome c oxidase II JBrowse link MT 7,006 7,689 RGD:13506652
G Myc MYC proto-oncogene, bHLH transcription factor JBrowse link 7 102,586,313 102,591,240 RGD:7240532
G Ndufc2 NADH:ubiquinone oxidoreductase subunit C2 JBrowse link 1 162,369,801 162,376,024 RGD:11040458
G Pid1 phosphotyrosine interaction domain containing 1 JBrowse link 9 91,667,748 91,683,468 RGD:1624291
G Ppargc1a PPARG coactivator 1 alpha JBrowse link 14 63,095,291 63,190,688 RGD:1624291
RGD:1600115
G Prkn parkin RBR E3 ubiquitin protein ligase JBrowse link 1 48,880,015 50,069,998 RGD:10413842
G Sirt1 sirtuin 1 JBrowse link 20 26,831,971 26,851,587 RGD:1624291
G Slc25a12 solute carrier family 25 member 12 JBrowse link 3 57,881,951 57,998,214 RGD:13628741
G Stat3 signal transducer and activator of transcription 3 JBrowse link 10 88,790,401 88,842,263 RGD:8694322
G Taz tafazzin JBrowse link X 156,421,006 156,429,461 RGD:13432160
G Tmsb4x thymosin beta 4, X-linked JBrowse link X 28,593,405 28,617,267 RGD:1624291
G Trem2 triggering receptor expressed on myeloid cells 2 JBrowse link 9 14,611,541 14,618,076 RGD:1624291
G Vcp valosin-containing protein JBrowse link 5 58,426,548 58,445,953 RGD:1624291
regulation of ATP biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ak4 adenylate kinase 4 JBrowse link 5 120,250,318 120,309,153 RGD:1624291
RGD:1600115
G Sphk2 sphingosine kinase 2 JBrowse link 1 101,692,972 101,700,604 RGD:1624291
regulation of mitochondrial ATP synthesis coupled proton transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atpsckmt ATP synthase c subunit lysine N-methyltransferase JBrowse link 2 84,678,892 84,694,152 RGD:1600115
RGD:1624291
G Dnajc30 DnaJ heat shock protein family (Hsp40) member C30 JBrowse link 12 24,668,398 24,669,464 RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19578
    metabolic process 11901
      ATP metabolic process 310
        ATP biosynthetic process 62
          AMP phosphorylation 2
          ATP synthesis coupled proton transport + 28
          negative regulation of ATP biosynthetic process + 4
          positive regulation of ATP biosynthetic process 17
          regulation of ATP biosynthetic process + 24
Path 2
Term Annotations click to browse term
  biological_process 19578
    metabolic process 11901
      cellular metabolic process 10737
        cellular aromatic compound metabolic process 5503
          nucleobase-containing compound metabolic process 5276
            nucleobase-containing small molecule metabolic process 582
              nucleoside phosphate metabolic process 503
                nucleoside triphosphate metabolic process 119
                  nucleoside triphosphate biosynthetic process 89
                    purine nucleoside triphosphate biosynthetic process 73
                      purine ribonucleoside triphosphate biosynthetic process 72
                        ATP biosynthetic process 62
                          AMP phosphorylation 2
                          ATP synthesis coupled proton transport + 28
                          negative regulation of ATP biosynthetic process + 4
                          positive regulation of ATP biosynthetic process 17
                          regulation of ATP biosynthetic process + 24
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.