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ONTOLOGY REPORT - ANNOTATIONS


Term:water-soluble vitamin metabolic process
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Accession:GO:0006767 term browser browse the term
Definition:The chemical reactions and pathways involving any of a diverse group of vitamins that are soluble in water.
Synonyms:exact_synonym: water-soluble vitamin metabolism


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anthranilate metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Haao 3-hydroxyanthranilate 3,4-dioxygenase JBrowse link 6 7,045,145 7,059,227 RGD:1600115
G Kmo kynurenine 3-monooxygenase JBrowse link 13 93,684,324 93,715,378 RGD:1600115
G Kynu kynureninase JBrowse link 3 28,416,926 28,566,939 RGD:1624291
RGD:13792537
biotin metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Btd biotinidase JBrowse link 16 7,758,192 7,791,301 RGD:1624291
RGD:13792537
cobalamin biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mmab metabolism of cobalamin associated B JBrowse link 12 47,920,712 47,935,438 RGD:1600115
G Mmachc metabolism of cobalamin associated C JBrowse link 5 135,555,587 135,561,723 RGD:1624291
RGD:13792537
cobalamin catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cubn cubilin JBrowse link 17 80,584,921 80,807,181 RGD:8554807
cobalamin metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcd4 ATP binding cassette subfamily D member 4 JBrowse link 6 108,315,026 108,329,550 RGD:1624291
RGD:1600115
G Atic 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase JBrowse link 9 78,862,013 78,882,061 RGD:5135263
G Cblif cobalamin binding intrinsic factor JBrowse link 1 228,118,048 228,132,296 RGD:1624368
G Gart phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase JBrowse link 11 31,780,477 31,805,728 RGD:5135263
G Mmachc metabolism of cobalamin associated C JBrowse link 5 135,555,587 135,561,723 RGD:1624291
G Mmadhc metabolism of cobalamin associated D JBrowse link 3 35,783,511 35,801,474 RGD:1600115
RGD:1624291
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase JBrowse link 17 66,210,444 66,295,014 RGD:1624291
RGD:1600115
folic acid catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mthfs methenyltetrahydrofolate synthetase JBrowse link 8 96,564,877 96,614,386 RGD:1624291
G Pm20d2 peptidase M20 domain containing 2 JBrowse link 5 48,416,005 48,437,054 RGD:13792537
folic acid metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dhfr dihydrofolate reductase JBrowse link 2 21,931,887 21,958,927 RGD:10054082
RGD:13792537
G Folr1 folate receptor alpha JBrowse link 1 166,934,457 166,945,864 RGD:1624291
RGD:1600115
G Gnmt glycine N-methyltransferase JBrowse link 9 16,565,274 16,568,626 RGD:728472
G Mtrr 5-methyltetrahydrofolate-homocysteine methyltransferase reductase JBrowse link 1 37,743,089 37,774,485 RGD:1624291
RGD:1600115
G Shmt1 serine hydroxymethyltransferase 1 JBrowse link 10 47,030,813 47,059,216 RGD:1624291
RGD:13792537
G Shmt2 serine hydroxymethyltransferase 2 JBrowse link 7 70,824,718 70,829,822 RGD:13792537
L-ascorbic acid biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Akr1a1 aldo-keto reductase family 1 member A1 JBrowse link 5 135,482,068 135,498,693 RGD:13792537
RGD:1624291
RGD:13825440
G Gsto1 glutathione S-transferase omega 1 JBrowse link 1 267,607,437 267,617,387 RGD:70644
G Gulo gulonolactone (L-) oxidase JBrowse link 15 42,671,206 42,693,711 RGD:1600115
G Rgn regucalcin JBrowse link X 1,833,484 1,848,904 RGD:1624291
RGD:13792537
RGD:1600115
L-ascorbic acid metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gclc glutamate-cysteine ligase, catalytic subunit JBrowse link 8 85,059,051 85,097,471 RGD:1624291
RGD:1600115
G Gsto1 glutathione S-transferase omega 1 JBrowse link 1 267,607,437 267,617,387 RGD:1600115
RGD:1624291
G Gsto2 glutathione S-transferase omega 2 JBrowse link 1 267,617,517 267,640,455 RGD:1624291
RGD:1600115
G LOC103690044 glutathione S-transferase omega-2 JBrowse link 1 271,228,018 271,243,517 RGD:1600115
G Slc23a2 solute carrier family 23 member 2 JBrowse link 3 124,632,491 124,842,225 RGD:634186
RGD:13792537
pantothenate metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Vnn1 vanin 1 JBrowse link 1 22,614,832 22,625,134 RGD:1624291
RGD:13792537
G Vnn3 vanin 3 JBrowse link 1 22,649,114 22,661,376 RGD:1624291
RGD:13792537
pyridoxal 5'-phosphate salvage term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pdxk pyridoxal kinase JBrowse link 20 10,930,651 10,952,194 RGD:1600115
RGD:13792537
pyridoxal phosphate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pdxk pyridoxal kinase JBrowse link 20 10,930,651 10,952,194 RGD:2303018
RGD:1624291
G Pnpo pyridoxamine 5'-phosphate oxidase JBrowse link 10 84,874,926 84,881,190 RGD:1624291
RGD:13792537
pyridoxal phosphate catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pdxp pyridoxal phosphatase JBrowse link 7 120,140,460 120,145,908 RGD:1624291
RGD:1600115
pyridoxine biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pnpo pyridoxamine 5'-phosphate oxidase JBrowse link 10 84,874,926 84,881,190 RGD:1600115
regulation of cobalamin metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Clybl citrate lyase beta like JBrowse link 15 108,608,203 108,838,222 RGD:1624291
RGD:1600115
RGD:13792537
riboflavin biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rfk riboflavin kinase JBrowse link 1 236,494,221 236,501,733 RGD:1600115
thiamine metabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acp3 acid phosphatase 3 JBrowse link 8 112,838,574 112,884,062 RGD:1600115
RGD:1624291
G Thtpa thiamine triphosphatase JBrowse link 15 33,755,157 33,759,117 RGD:1600115
G Tpk1 thiamin pyrophosphokinase 1 JBrowse link 4 72,792,252 73,174,179 RGD:1624291
RGD:1600115

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19245
    metabolic process 11438
      small molecule metabolic process 1762
        vitamin metabolic process 78
          water-soluble vitamin metabolic process 39
            L-ascorbic acid metabolic process + 8
            anthranilate metabolic process + 3
            biotin metabolic process + 1
            cobalamin metabolic process + 10
            folic acid metabolic process + 8
            nicotinamide metabolic process + 0
            nicotinate metabolic process + 0
            pantothenate metabolic process + 2
            riboflavin metabolic process + 1
            thiamine-containing compound metabolic process + 3
            vitamin B6 metabolic process + 3
            water-soluble vitamin biosynthetic process + 9
            water-soluble vitamin catabolic process + 4
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.