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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of pH
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Accession:GO:0006885 term browser browse the term
Definition:Any process involved in the maintenance of an internal equilibrium of hydrogen ions, thereby modulating the internal pH, within an organism or cell.
Synonyms:exact_synonym: hydrogen ion homeostasis


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regulation of pH term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agtr1a angiotensin II receptor, type 1a IDA RGD PMID:11906170 RGD:70819 NCBI chr17:35,907,102...35,958,136
Ensembl chr17:35,907,108...35,958,077
JBrowse link
G Atp12a ATPase H+/K+ transporting non-gastric alpha2 subunit ISO MGI:MGI:2177160 (MGI:MGI:3703393|PMID:16525125) RGD PMID:16525125 MGI:MGI:3703393 NCBI chr15:36,561,306...36,590,171
Ensembl chr15:36,565,495...36,590,171
JBrowse link
G Atp6v0a4 ATPase H+ transporting V0 subunit a4 ISO (PMID:10973252) RGD PMID:10973252 NCBI chr 4:65,736,585...65,821,916
Ensembl chr 4:65,736,585...65,818,521
JBrowse link
G Atp6v1b1 ATPase H+ transporting V1 subunit B1 ISS
ISO
GO_REF:0000024
MGI:MGI:2673510 (MGI:MGI:3603983|PMID:16174750), (MGI:MGI:4943394|PMID:17898041)
(PMID:12414817), (PMID:9916796)
UniProt
RGD
PMID:9916796, PMID:12414817, PMID:16174750, PMID:17898041 GO_REF:0000024, MGI:MGI:3603983, MGI:MGI:4943394 NCBI chr 4:115,417,100...115,435,754
Ensembl chr 4:115,416,580...115,437,206
JBrowse link
G Edn1 endothelin 1 ISO (MGI:MGI:2136077|PMID:11413164) RGD PMID:11413164 MGI:MGI:2136077 NCBI chr17:22,136,814...22,143,745
Ensembl chr17:22,137,324...22,143,324
JBrowse link
G Ednrb endothelin receptor type B ISO MGI:MGI:1857161 (MGI:MGI:2136077|PMID:11413164) RGD PMID:11413164 MGI:MGI:2136077 NCBI chr15:88,004,775...88,036,354
Ensembl chr15:88,006,977...88,036,354
JBrowse link
G Kcnj16 potassium inwardly-rectifying channel, subfamily J, member 16 IMP RGD PMID:30605394 RGD:38500203 NCBI chr10:99,330,894...99,391,551
Ensembl chr10:99,388,130...99,389,898
JBrowse link
G Pdk2 pyruvate dehydrogenase kinase 2 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5428826|PMID:22360721)
Ensembl
UniProt
RGD
PMID:22360721 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5428826 NCBI chr10:82,838,270...82,852,758
Ensembl chr10:82,839,153...82,852,660
JBrowse link
G Pdk4 pyruvate dehydrogenase kinase 4 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5428826|PMID:22360721)
Ensembl
UniProt
RGD
PMID:22360721 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5428826 NCBI chr 4:30,546,772...30,556,774
Ensembl chr 4:30,546,664...30,556,814
JBrowse link
G Rhcg Rh family, C glycoprotein IEA
ISO
GO_REF:0000107
(MGI:MGI:3818186|PMID:19020613)
Ensembl
RGD
PMID:19020613 GO_REF:0000107, MGI:MGI:3818186 NCBI chr 1:141,325,854...141,349,881
Ensembl chr 1:141,325,856...141,349,881
JBrowse link
G Slc26a4 solute carrier family 26 member 4 ISO
ISS
(MGI:MGI:3607624|PMID:16144965)
GO_REF:0000024
RGD
UniProt
PMID:16144965 GO_REF:0000024, MGI:MGI:3607624 NCBI chr 6:50,809,103...50,848,443
Ensembl chr 6:50,808,923...50,846,965
JBrowse link
G Slc26a9 solute carrier family 26 member 9 ISO (MGI:MGI:3603485|PMID:15800055) RGD PMID:15800055 MGI:MGI:3603485 NCBI chr13:48,512,415...48,539,467
Ensembl chr13:48,513,008...48,539,467
JBrowse link
G Slc4a10 solute carrier family 4 member 10 ISO (MGI:MGI:2148895|PMID:10993873) RGD PMID:10993873 MGI:MGI:2148895 NCBI chr 3:47,995,812...48,287,897
Ensembl chr 3:47,995,959...48,287,910
JBrowse link
G Slc4a4 solute carrier family 4 member 4 TAS RGD PMID:11788449 RGD:70580 NCBI chr14:20,476,258...20,817,042
Ensembl chr14:20,479,323...20,920,286
JBrowse link
G Slc4a5 solute carrier family 4 member 5 TAS RGD PMID:15151908 RGD:1303995 NCBI chr 4:114,918,488...115,002,290
Ensembl chr 4:114,918,488...115,002,300
JBrowse link
G Slc9a1 solute carrier family 9 member A1 ISO
ISS
(PMID:8901634)
MGI:MGI:2429323 (MGI:MGI:1353365|PMID:10673550), (MGI:MGI:2446396|PMID:10666043)
GO_REF:0000024
RGD
UniProt
PMID:8901634, PMID:10666043, PMID:10673550 GO_REF:0000024, MGI:MGI:1353365, MGI:MGI:2446396 NCBI chr 5:151,573,122...151,626,360
Ensembl chr 5:151,573,092...151,627,316
JBrowse link
G Slc9a2 solute carrier family 9 member A2 ISO (MGI:MGI:2446396|PMID:10666043) RGD PMID:10666043 MGI:MGI:2446396 NCBI chr 9:47,386,581...47,491,813
Ensembl chr 9:47,386,626...47,491,907
JBrowse link
G Slc9a3 solute carrier family 9 member A3 IDA
IEA
ISO
GO_REF:0000107
(MGI:MGI:2446396|PMID:10666043)
Ensembl
RGD
PMID:10666043, PMID:15265811 GO_REF:0000107, MGI:MGI:2446396, RGD:1625070 NCBI chr 1:31,731,652...31,777,144
Ensembl chr 1:31,734,327...31,777,070
JBrowse link
G Slc9a4 solute carrier family 9 member A4 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:47,281,821...47,334,755
Ensembl chr 9:47,281,961...47,328,839
JBrowse link
G Slc9a5 solute carrier family 9 member A5 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr19:37,304,034...37,325,345
Ensembl chr19:37,305,248...37,325,335
JBrowse link
G Slc9a7 solute carrier family 9 member A7 ISO (PMID:11279194) RGD PMID:11279194 NCBI chr  X:2,434,918...2,615,936
Ensembl chr  X:2,435,305...2,614,770
JBrowse link
G Slc9a8 solute carrier family 9 member A8 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:164,173,045...164,224,747
Ensembl chr 3:164,174,357...164,222,329
JBrowse link
endosomal lumen acidification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aqp11 aquaporin 11 ISO MGI:MGI:3528447 (MGI:MGI:3588799|PMID:16107722) RGD PMID:16107722 MGI:MGI:3588799 NCBI chr 1:162,703,394...162,713,560
Ensembl chr 1:162,703,442...162,713,610
JBrowse link
G Faslg Fas ligand IDA RGD PMID:18045865 RGD:2315735 NCBI chr13:79,696,811...79,717,581
Ensembl chr13:79,698,445...79,705,705
JBrowse link
G Tmem9 transmembrane protein 9 ISO (PMID:30374053) RGD PMID:30374053 NCBI chr13:52,854,031...52,871,300
Ensembl chr13:52,854,031...52,871,297
JBrowse link
intracellular pH elevation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cftr CF transmembrane conductance regulator IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5429843|PMID:21976599)
Ensembl
UniProt
RGD
PMID:21976599 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5429843 NCBI chr 4:42,693,263...42,860,679
Ensembl chr 4:42,692,836...42,860,676
JBrowse link
G Nox1 NADPH oxidase 1 ISO
IEA
(PMID:10615049)
GO_REF:0000107
RGD
Ensembl
PMID:10615049 GO_REF:0000107 NCBI chr  X:104,909,328...104,932,508
Ensembl chr  X:104,909,326...104,932,508
JBrowse link
G Slc26a3 solute carrier family 26 member 3 ISO
ISS
(MGI:MGI:5429843|PMID:21976599)
GO_REF:0000024
RGD
UniProt
PMID:21976599 GO_REF:0000024, MGI:MGI:5429843 NCBI chr 6:50,725,085...50,766,306
Ensembl chr 6:50,725,085...50,766,300
JBrowse link
G Slc26a6 solute carrier family 26 member 6 ISO (MGI:MGI:5429843|PMID:21976599) RGD PMID:21976599 MGI:MGI:5429843 NCBI chr 8:117,648,792...117,659,376
Ensembl chr 8:117,648,745...117,659,804
JBrowse link
intracellular pH reduction term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gpr89b G protein-coupled receptor 89B ISO
IBA
(PMID:18794847)
PMID:21873635
RGD PMID:18794847, PMID:21873635 RGD:13792537 NCBI chr 2:198,999,945...199,038,702
Ensembl chr 2:198,999,946...199,038,702
JBrowse link
G Slc12a5 solute carrier family 12 member 5 IDA RGD PMID:16420452 RGD:2303953 NCBI chr 3:161,433,303...161,465,078
Ensembl chr 3:161,425,988...161,462,879
JBrowse link
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 ISO (MGI:MGI:6296816|PMID:23908015) RGD PMID:23908015 MGI:MGI:6296816 NCBI chr 1:219,126,687...219,139,466
Ensembl chr 1:219,127,602...219,139,464
JBrowse link
G Ttpa alpha tocopherol transfer protein IDA RGD PMID:22147702 RGD:7247589 NCBI chr 5:34,007,926...34,029,315
Ensembl chr 5:34,007,920...34,028,452
JBrowse link
lysosomal lumen acidification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp6ap2 ATPase H+ transporting accessory protein 2 ISO
ISS
(PMID:32276428)
GO_REF:0000024
RGD
UniProt
PMID:32276428 GO_REF:0000024 NCBI chr  X:11,137,889...11,164,854
Ensembl chr  X:11,136,939...11,164,915
JBrowse link
G Ccdc115 coiled-coil domain containing 115 ISO (PMID:28296633) RGD PMID:28296633 NCBI chr 9:37,774,876...37,778,839
Ensembl chr 9:37,775,311...37,779,967
JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin ISO
IBA
ISS
(PMID:11722572)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:11722572, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 1:197,986,384...197,999,726
Ensembl chr 1:197,986,385...197,997,664
JBrowse link
G Cln5 CLN5, intracellular trafficking protein ISO (PMID:11722572) RGD PMID:11722572 NCBI chr15:93,634,815...93,644,146 JBrowse link
G Cln6 CLN6, transmembrane ER protein ISO (PMID:11722572) RGD PMID:11722572 NCBI chr 8:67,733,215...67,748,170
Ensembl chr 8:67,733,215...67,748,172
JBrowse link
G Grn granulin precursor ISS
ISO
IEA
GO_REF:0000024
(PMID:28073925)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:28073925 GO_REF:0000024, GO_REF:0000107 NCBI chr10:90,377,103...90,383,207
Ensembl chr10:90,376,933...90,383,205
JBrowse link
G Ppt1 palmitoyl-protein thioesterase 1 ISO
ISS
(PMID:11722572)
PMID:8895569
RGD PMID:11722572, PMID:8895569 RGD:8553248 NCBI chr 5:140,538,260...140,558,163
Ensembl chr 5:140,538,260...140,558,162
JBrowse link
G Snapin SNAP-associated protein ISO MGI:MGI:3608768 (MGI:MGI:4879078|PMID:20920792) RGD PMID:20920792 MGI:MGI:4879078 NCBI chr 2:189,878,159...189,880,743
Ensembl chr 2:189,878,168...189,880,743
JBrowse link
G Tmem106b transmembrane protein 106B ISO MGI:MGI:5319917 (MGI:MGI:6101836|PMID:28728022) RGD PMID:28728022 MGI:MGI:6101836 NCBI chr 4:39,517,679...39,534,491
Ensembl chr 4:39,517,548...39,535,169
JBrowse link
G Tmem199 transmembrane protein 199 ISO
ISS
(PMID:28296633)
GO_REF:0000024
RGD
UniProt
PMID:28296633 GO_REF:0000024 NCBI chr10:65,775,721...65,780,293
Ensembl chr10:65,775,715...65,780,349
JBrowse link
G Tmem9 transmembrane protein 9 ISO (PMID:30374053) RGD PMID:30374053 NCBI chr13:52,854,031...52,871,300
Ensembl chr13:52,854,031...52,871,297
JBrowse link
lysosomal lumen pH elevation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin ISO
ISS
(PMID:10924275)
GO_REF:0000024
RGD
UniProt
PMID:10924275 GO_REF:0000024 NCBI chr 1:197,986,384...197,999,726
Ensembl chr 1:197,986,385...197,997,664
JBrowse link
negative regulation of cellular pH reduction term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2, apoptosis regulator IEA
ISO
GO_REF:0000107
(PMID:10506221)
Ensembl
RGD
PMID:10506221 GO_REF:0000107 NCBI chr13:26,605,426...26,769,374
Ensembl chr13:26,605,426...26,769,374
JBrowse link
pH elevation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc4a1 solute carrier family 4 member 1 (Diego blood group) IEA
ISO
GO_REF:0000107
MGI:MGI:1857140 (MGI:MGI:3843596|PMID:17409310)
Ensembl
RGD
PMID:17409310 GO_REF:0000107, MGI:MGI:3843596 NCBI chr10:90,296,144...90,312,401
Ensembl chr10:90,296,141...90,312,386
JBrowse link
pH reduction term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp4a ATPase H+/K+ transporting subunit alpha ISO (MGI:MGI:74022|PMID:7762614) RGD PMID:7762614 MGI:MGI:74022 NCBI chr 1:89,162,700...89,175,504
Ensembl chr 1:89,162,639...89,175,811
JBrowse link
G Atp4b ATPase H+/K+ transporting subunit beta IMP RGD PMID:19064992 RGD:14696784 NCBI chr16:81,136,218...81,145,131
Ensembl chr16:81,136,218...81,145,131
JBrowse link
G Atp6ap1 ATPase H+ transporting accessory protein 1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5575464|PMID:22467241)
Ensembl
UniProt
RGD
PMID:22467241 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5575464 NCBI chr  X:156,407,973...156,415,053
Ensembl chr  X:156,407,937...156,415,145
JBrowse link
G Atp6v1b1 ATPase H+ transporting V1 subunit B1 ISS
ISO
GO_REF:0000024
(PMID:19478356), (PMID:20622307)
UniProt
RGD
PMID:19478356, PMID:20622307 GO_REF:0000024 NCBI chr 4:115,417,100...115,435,754
Ensembl chr 4:115,416,580...115,437,206
JBrowse link
G Cckbr cholecystokinin B receptor ISO
IEA
MGI:MGI:2180591 (MGI:MGI:4353464|PMID:19448635)
GO_REF:0000107
RGD
Ensembl
PMID:19448635 GO_REF:0000107, MGI:MGI:4353464 NCBI chr 1:170,262,218...170,272,298
Ensembl chr 1:170,262,156...170,272,298
JBrowse link
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 ISO MGI:MGI:1856973 (MGI:MGI:4353464|PMID:19448635), (MGI:MGI:5486535|PMID:23297412) RGD PMID:19448635, PMID:23297412 MGI:MGI:4353464, MGI:MGI:5486535 NCBI chr 1:219,126,687...219,139,466
Ensembl chr 1:219,127,602...219,139,464
JBrowse link
phagosome acidification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rab20 RAB20, member RAS oncogene family ISO (PMID:21255211) RGD PMID:21255211 NCBI chr16:83,358,116...83,382,326
Ensembl chr16:83,358,116...83,382,326
JBrowse link
G Rab38 RAB38, member RAS oncogene family ISO (PMID:21255211) RGD PMID:21255211 NCBI chr 1:152,072,716...152,153,449
Ensembl chr 1:152,072,665...152,153,449
JBrowse link
G Rab39a RAB39A, member RAS oncogene family ISO (PMID:21255211) RGD PMID:21255211 NCBI chr 8:58,275,984...58,292,995
Ensembl chr 8:58,272,098...58,293,102
JBrowse link
G Rab7a RAB7A, member RAS oncogene family ISO
ISS
(PMID:21255211)
GO_REF:0000024
RGD
UniProt
PMID:21255211 GO_REF:0000024 NCBI chr 4:119,910,461...119,963,065
Ensembl chr 4:119,910,478...119,959,173
JBrowse link
G Slamf8 SLAM family member 8 ISO MGI:MGI:5442794 (MGI:MGI:5442671|PMID:22593622) RGD PMID:22593622 MGI:MGI:5442671 NCBI chr13:90,967,862...90,978,752
Ensembl chr13:90,967,739...90,977,734
JBrowse link
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 ISO MGI:MGI:3852642 (MGI:MGI:3850356|PMID:19549681) RGD PMID:19549681 MGI:MGI:3850356 NCBI chr 1:219,126,687...219,139,466
Ensembl chr 1:219,127,602...219,139,464
JBrowse link
positive regulation of cellular pH reduction term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Avp arginine vasopressin IMP RGD PMID:17762181 RGD:2300343 NCBI chr 3:123,117,482...123,119,460
Ensembl chr 3:123,117,492...123,119,460
JBrowse link
G Avpr1a arginine vasopressin receptor 1A IMP RGD PMID:17762181 RGD:2300343 NCBI chr 7:67,341,366...67,345,290
Ensembl chr 7:67,341,080...67,345,308
JBrowse link
G Avpr1b arginine vasopressin receptor 1B IMP RGD PMID:17762181 RGD:2300343 NCBI chr13:48,367,307...48,378,831
Ensembl chr13:48,367,307...48,378,831
JBrowse link
G Car2 carbonic anhydrase 2 IMP
ISO
MGI:MGI:2135646 (MGI:MGI:5506965|PMID:23881097) RGD PMID:23881097, PMID:9665810 MGI:MGI:5506965, RGD:1342423 NCBI chr 2:88,097,740...88,112,868
Ensembl chr 2:88,097,720...88,113,029
JBrowse link
G Car7 carbonic anhydrase 7 ISO MGI:MGI:5543604 (MGI:MGI:5506965|PMID:23881097) RGD PMID:23881097 MGI:MGI:5506965 NCBI chr19:636,545...645,935
Ensembl chr19:636,545...645,937
JBrowse link
positive regulation of Golgi lumen acidification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ube3a ubiquitin protein ligase E3A IMP
ISO
PMID:23447592
(MGI:MGI:5486513|PMID:23447592)
RGD PMID:23447592, PMID:23447592 MGI:MGI:5486513, RGD:15023469 NCBI chr 1:116,586,901...116,678,161
Ensembl chr 1:116,587,815...116,679,973
JBrowse link
regulation of cellular pH term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp1a4 ATPase Na+/K+ transporting subunit alpha 4 IDA
ISS
ISO
GO_REF:0000024
(PMID:12112599)
UniProt
RGD
PMID:12112599, PMID:12112599 GO_REF:0000024, RGD:728364 NCBI chr13:90,605,792...90,642,032
Ensembl chr13:90,605,794...90,641,772
JBrowse link
G Atp6ap1 ATPase H+ transporting accessory protein 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:156,407,973...156,415,053
Ensembl chr  X:156,407,937...156,415,145
JBrowse link
G Atp6ap1l ATPase H+ transporting accessory protein 1 like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:19,781,375...19,809,355
Ensembl chr 2:19,781,408...19,808,937
JBrowse link
G Atp6v1b2 ATPase H+ transporting V1 subunit B2 TAS RGD PMID:15013950 RGD:1304309 NCBI chr16:22,326,537...22,350,143
Ensembl chr16:22,326,529...22,350,155
JBrowse link
G Car2 carbonic anhydrase 2 TAS RGD PMID:9665810 RGD:1342423 NCBI chr 2:88,097,740...88,112,868
Ensembl chr 2:88,097,720...88,113,029
JBrowse link
G Chp2 calcineurin-like EF hand protein 2 TAS RGD PMID:12576672 RGD:1299552 NCBI chr 1:192,169,634...192,173,228
Ensembl chr 1:192,169,841...192,173,253
JBrowse link
G Gpr39 G protein-coupled receptor 39 ISO (MGI:MGI:5707553|PMID:26375174) RGD PMID:26375174 MGI:MGI:5707553 NCBI chr13:42,008,642...42,220,737
Ensembl chr13:42,008,842...42,009,738
JBrowse link
G Lacc1 laccase domain containing 1 ISO (PMID:31978345) RGD PMID:31978345 NCBI chr15:59,199,537...59,217,200
Ensembl chr15:59,209,829...59,215,803
JBrowse link
G Mafg MAF bZIP transcription factor G IDA RGD PMID:11583919 RGD:633304 NCBI chr10:109,802,877...109,811,476
Ensembl chr10:109,806,159...109,811,323
JBrowse link
G Mapk1 mitogen activated protein kinase 1 ISO (MGI:MGI:5707553|PMID:26375174) RGD PMID:26375174 MGI:MGI:5707553 NCBI chr11:88,203,863...88,273,301
Ensembl chr11:88,211,599...88,273,254
JBrowse link
G Mapk3 mitogen activated protein kinase 3 ISO (MGI:MGI:5707553|PMID:26375174) RGD PMID:26375174 MGI:MGI:5707553 NCBI chr 1:198,192,773...198,198,975
Ensembl chr 1:198,192,773...198,198,975
JBrowse link
G Slc4a10 solute carrier family 4 member 10 ISO MGI:MGI:3774019 (MGI:MGI:3772751|PMID:18165320) RGD PMID:18165320 MGI:MGI:3772751 NCBI chr 3:47,995,812...48,287,897
Ensembl chr 3:47,995,959...48,287,910
JBrowse link
regulation of Golgi lumen acidification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc9a7 solute carrier family 9 member A7 ISO (PMID:30335141) RGD PMID:30335141 NCBI chr  X:2,434,918...2,615,936
Ensembl chr  X:2,435,305...2,614,770
JBrowse link
regulation of intracellular pH term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp5f1b ATP synthase F1 subunit beta IEA
ISO
GO_REF:0000107
(PMID:17510399)
Ensembl
RGD
PMID:17510399 GO_REF:0000107 NCBI chr 7:2,504,708...2,511,748
Ensembl chr 7:2,504,695...2,511,749
JBrowse link
G Car2 carbonic anhydrase 2 ISO
IBA
ISS
(MGI:MGI:4442131|PMID:20150244)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:20150244, PMID:21873635 GO_REF:0000024, MGI:MGI:4442131, RGD:13792537 NCBI chr 2:88,097,740...88,112,868
Ensembl chr 2:88,097,720...88,113,029
JBrowse link
G Car7 carbonic anhydrase 7 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:636,545...645,935
Ensembl chr19:636,545...645,937
JBrowse link
G Chp1 calcineurin-like EF-hand protein 1 ISS
ISO
GO_REF:0000024
(PMID:15035633), (PMID:8901634)
UniProt
RGD
PMID:8901634, PMID:15035633 GO_REF:0000024 NCBI chr 3:111,354,506...111,389,998
Ensembl chr 3:111,354,506...111,389,989
JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:197,986,384...197,999,726
Ensembl chr 1:197,986,385...197,997,664
JBrowse link
G Hvcn1 hydrogen voltage-gated channel 1 IMP RGD PMID:24935944 RGD:14985214 NCBI chr12:39,822,814...39,851,093
Ensembl chr12:39,822,637...39,850,567
JBrowse link
G Slc26a6 solute carrier family 26 member 6 ISO (MGI:MGI:4442131|PMID:20150244)
(PMID:15990874), (PMID:20501439)
RGD PMID:15990874, PMID:20150244, PMID:20501439 MGI:MGI:4442131 NCBI chr 8:117,648,792...117,659,376
Ensembl chr 8:117,648,745...117,659,804
JBrowse link
G Slc4a1 solute carrier family 4 member 1 (Diego blood group) IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:90,296,144...90,312,401
Ensembl chr10:90,296,141...90,312,386
JBrowse link
G Slc4a10 solute carrier family 4 member 10 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:47,995,812...48,287,897
Ensembl chr 3:47,995,959...48,287,910
JBrowse link
G Slc4a2 solute carrier family 4 member 2 IMP
IBA
PMID:21873635 RGD
GO_Central
PMID:16440368, PMID:21873635 RGD:9999231, RGD:13792537 NCBI chr 4:7,264,677...7,282,355
Ensembl chr 4:7,264,683...7,281,223
JBrowse link
G Slc4a3 solute carrier family 4 member 3 ISO
IBA
IEA
(MGI:MGI:64573|PMID:2686841)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:2686841, PMID:21873635 GO_REF:0000107, MGI:MGI:64573, RGD:13792537 NCBI chr 9:82,742,207...82,755,119
Ensembl chr 9:82,741,920...82,755,153
JBrowse link
G Slc4a4 solute carrier family 4 member 4 ISO
IBA
IEA
UniProtKB:Q9JK62 (PMID:10069984), (PMID:21976511), (PMID:24453308)
PMID:21873635
(MGI:MGI:5295108|PMID:21976511), (MGI:MGI:5553185|PMID:24453308)
GO_REF:0000107
RGD
Ensembl
PMID:10069984, PMID:21976511, PMID:24453308, PMID:21873635 GO_REF:0000107, MGI:MGI:5295108, MGI:MGI:5553185, RGD:13792537 NCBI chr14:20,476,258...20,817,042
Ensembl chr14:20,479,323...20,920,286
JBrowse link
G Slc4a5 solute carrier family 4 member 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:114,918,488...115,002,290
Ensembl chr 4:114,918,488...115,002,300
JBrowse link
G Slc4a7 solute carrier family 4 member 7 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:11,832,611...11,912,923
Ensembl chr15:11,836,286...11,912,916
JBrowse link
G Slc4a8 solute carrier family 4 member 8 ISO
IBA
IEA
(PMID:11133997), (PMID:18577713)
PMID:21873635
(MGI:MGI:5013899|PMID:21593314)
GO_REF:0000107
RGD
Ensembl
PMID:11133997, PMID:18577713, PMID:21593314, PMID:21873635 GO_REF:0000107, MGI:MGI:5013899, RGD:13792537 NCBI chr 7:142,397,352...142,467,398
Ensembl chr 7:142,397,371...142,464,158
JBrowse link
G Slc4a9 solute carrier family 4 member 9 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:29,352,596...29,373,603
Ensembl chr18:29,352,749...29,365,595
JBrowse link
G Slc9a1 solute carrier family 9 member A1 IMP
IBA
ISO
ISS
PMID:21873635
(PMID:15035633), (PMID:24840010)
GO_REF:0000024
RGD
UniProt
PMID:15035633, PMID:24840010, PMID:22387884, PMID:21873635 GO_REF:0000024, RGD:6771326, RGD:13792537 NCBI chr 5:151,573,122...151,626,360
Ensembl chr 5:151,573,092...151,627,316
JBrowse link
G Slc9a2 solute carrier family 9 member A2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:47,386,581...47,491,813
Ensembl chr 9:47,386,626...47,491,907
JBrowse link
G Slc9a3 solute carrier family 9 member A3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:31,731,652...31,777,144
Ensembl chr 1:31,734,327...31,777,070
JBrowse link
G Slc9a4 solute carrier family 9 member A4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:47,281,821...47,334,755
Ensembl chr 9:47,281,961...47,328,839
JBrowse link
G Slc9a5 solute carrier family 9 member A5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:37,304,034...37,325,345
Ensembl chr19:37,305,248...37,325,335
JBrowse link
G Slc9a6 solute carrier family 9 member A6 ISO
IBA
(PMID:30296617)
PMID:21873635
RGD PMID:30296617, PMID:21873635 RGD:13792537 NCBI chr  X:158,979,081...159,045,019
Ensembl chr  X:158,978,755...159,045,044
JBrowse link
G Slc9a7 solute carrier family 9 member A7 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:2,434,918...2,615,936
Ensembl chr  X:2,435,305...2,614,770
JBrowse link
G Slc9a8 solute carrier family 9 member A8 ISO
IBA
(MGI:MGI:3529663|PMID:15522866)
PMID:21873635
RGD PMID:15522866, PMID:21873635 MGI:MGI:3529663, RGD:13792537 NCBI chr 3:164,173,045...164,224,747
Ensembl chr 3:164,174,357...164,222,329
JBrowse link
G Slc9a9 solute carrier family 9 member A9 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:102,304,095...103,022,619
Ensembl chr 8:102,304,095...103,022,619
JBrowse link
G Slc9b1 solute carrier family 9 member B1 ISO (MGI:MGI:5883207|PMID:20036903) RGD PMID:20036903 MGI:MGI:5883207 NCBI chr 2:240,527,120...240,581,616
Ensembl chr 2:240,527,130...240,576,179
JBrowse link
G Slc9c1 solute carrier family 9 member C1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:60,184,953...60,251,458
Ensembl chr11:60,184,961...60,251,428
JBrowse link
G Tm9sf4 transmembrane 9 superfamily member 4 ISO (PMID:19893578) RGD PMID:19893578 NCBI chr 3:148,635,822...148,689,961
Ensembl chr 3:148,635,775...148,688,553
JBrowse link
G Tp53 tumor protein p53 IMP RGD PMID:16688778 RGD:1598619 NCBI chr10:56,186,299...56,198,449
Ensembl chr10:56,187,020...56,198,449
JBrowse link
regulation of lysosomal lumen pH term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC681325 hypothetical protein LOC681325 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:80,359,555...80,363,168
Ensembl chr  X:80,359,555...80,363,168
JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 ISO (PMID:22012985) RGD PMID:22012985 NCBI chr 7:132,857,311...133,018,549
Ensembl chr 7:132,857,628...133,018,584
JBrowse link
G Tasl TLR adaptor interacting with endolysosomal SLC15A4 ISO
IBA
(PMID:31001245)
PMID:21873635
RGD PMID:31001245, PMID:21873635 RGD:13792537 NCBI chr  X:54,390,733...54,409,466
Ensembl chr  X:54,390,733...54,409,466
JBrowse link
G Tmem165 transmembrane protein 165 ISO
ISS
(PMID:23569283)
GO_REF:0000024
RGD
UniProt
PMID:23569283 GO_REF:0000024 NCBI chr14:34,503,037...34,528,262
Ensembl chr14:34,503,038...34,528,262
JBrowse link
G Tmem175 transmembrane protein 175 ISO
ISS
(MGI:MGI:5693670|PMID:26317472)
GO_REF:0000024
RGD
UniProt
PMID:26317472 GO_REF:0000024, MGI:MGI:5693670 NCBI chr14:2,083,745...2,100,006
Ensembl chr14:2,083,712...2,100,005
JBrowse link
G Vps33a VPS33A core subunit of CORVET and HOPS complexes ISO
ISS
(PMID:28013294)
GO_REF:0000024
RGD
UniProt
PMID:28013294 GO_REF:0000024 NCBI chr12:38,459,816...38,482,903
Ensembl chr12:38,459,832...38,484,512
JBrowse link
vacuolar acidification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp6v0a1 ATPase H+ transporting V0 subunit a1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:88,914,264...88,967,736
Ensembl chr10:88,914,276...88,967,748
JBrowse link
G Atp6v0a4 ATPase H+ transporting V0 subunit a4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:65,736,585...65,821,916
Ensembl chr 4:65,736,585...65,818,521
JBrowse link
G Atp6v0d1 ATPase H+ transporting V0 subunit D1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:37,481,782...37,525,762
Ensembl chr19:37,481,782...37,525,762
JBrowse link
G Atp6v0d2 ATPase H+ transporting V0 subunit D2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:33,843,591...33,892,446
Ensembl chr 5:33,843,519...33,892,462
JBrowse link
G Atp6v1b2 ATPase H+ transporting V1 subunit B2 TAS RGD PMID:15013950 RGD:1304309 NCBI chr16:22,326,537...22,350,143
Ensembl chr16:22,326,529...22,350,155
JBrowse link
G Clic4 chloride intracellular channel 4 ISO
IEA
MGI:MGI:3838012 (MGI:MGI:3837628|PMID:19197003)
GO_REF:0000107
RGD
Ensembl
PMID:19197003 GO_REF:0000107, MGI:MGI:3837628 NCBI chr 5:153,568,937...153,625,669
Ensembl chr 5:153,568,745...153,625,869
JBrowse link
G Dmxl1 Dmx-like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:44,468,762...44,644,769
Ensembl chr18:44,468,784...44,642,050
JBrowse link
G Dmxl2 Dmx-like 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:58,932,575...59,077,788
Ensembl chr 8:58,932,580...59,077,690
JBrowse link
G Rogdi rogdi atypical leucine zipper IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:10,761,477...10,766,096
Ensembl chr10:10,761,477...10,766,095
JBrowse link
G Slc11a1 solute carrier family 11 member 1 IEA
ISO
GO_REF:0000107
MGI:MGI:2446573 (MGI:MGI:3654884|PMID:11067873), (MGI:MGI:3690711|PMID:9670047), (MGI:MGI:3839054|PMID:18984740)
Ensembl
RGD
PMID:9670047, PMID:11067873, PMID:18984740 GO_REF:0000107, MGI:MGI:3654884, MGI:MGI:3690711, MGI:MGI:3839054 NCBI chr 9:81,655,590...81,666,697
Ensembl chr 9:81,655,629...81,666,706
JBrowse link
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:219,126,687...219,139,466
Ensembl chr 1:219,127,602...219,139,464
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20027
    biological regulation 13773
      regulation of biological quality 4280
        homeostatic process 2077
          chemical homeostasis 1334
            ion homeostasis 887
              inorganic ion homeostasis 818
                monovalent inorganic cation homeostasis 160
                  regulation of pH 97
                    pH elevation + 7
                    pH reduction + 45
                    regulation of cellular pH + 83
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.