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ONTOLOGY REPORT - ANNOTATIONS


Term:endoplasmic reticulum to Golgi vesicle-mediated transport
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Accession:GO:0006888 term browser browse the term
Definition:The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi.
Synonyms:exact_synonym: ER to Golgi transport;   ER to Golgi vesicle-mediated transport;   anterograde transport, ER to Golgi;   anterograde transport, endoplasmic reticulum to Golgi;   anterograde vesicle-mediated transport, ER to Golgi;   anterograde vesicle-mediated transport, endoplasmic reticulum to Golgi;   endoplasmic reticulum to Golgi transport;   rough ER to cis-Golgi transport;   rough ER to cis-Golgi vesicle-mediated transport;   rough endoplasmic reticulum to cis-Golgi transport;   rough endoplasmic reticulum to cis-Golgi vesicle-mediated transport
 alt_id: GO:0048221


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endoplasmic reticulum to Golgi vesicle-mediated transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ank1 ankyrin 1 JBrowse link NW_004955536 1,049,325 1,237,943 RGD:9068941
G Atl2 atlastin GTPase 2 JBrowse link NW_004955441 6,004,209 6,034,484 RGD:9068941
G Atl3 atlastin GTPase 3 JBrowse link NW_004955422 21,359,152 21,406,151 RGD:9068941
G Bcap29 B cell receptor associated protein 29 JBrowse link NW_004955410 11,934,158 11,988,479 RGD:9068941
G Bcap31 B cell receptor associated protein 31 JBrowse link NW_004955580 429,223 459,168 RGD:9068941
G Bet1 Bet1 golgi vesicular membrane trafficking protein JBrowse link NW_004955432 10,762,973 10,774,744 RGD:9068941
G Cnih4 cornichon family AMPA receptor auxiliary protein 4 JBrowse link NW_004955520 991,477 1,006,731 RGD:9068941
G Cog3 component of oligomeric golgi complex 3 JBrowse link NW_004955518 3,211,729 3,276,057 RGD:9068941
G Creb3l2 cAMP responsive element binding protein 3 like 2 JBrowse link NW_004955494 5,014,509 5,094,220 RGD:9068941
G Cul3 cullin 3 JBrowse link NW_004955453 9,546,554 9,629,976 RGD:9068941
G Ergic1 endoplasmic reticulum-golgi intermediate compartment 1 JBrowse link NW_004955408 25,540,149 25,644,108 RGD:9068941
G Golga2 golgin A2 JBrowse link NW_004955570 782,218 799,044 RGD:9068941
G Gosr1 golgi SNAP receptor complex member 1 JBrowse link NW_004955481 2,831,118 2,876,756 RGD:9068941
G Gosr2 golgi SNAP receptor complex member 2 JBrowse link NW_004955478 10,868,912 10,889,405 RGD:9068941
G Htt huntingtin JBrowse link NW_004955514 1,906,189 2,042,357 RGD:9068941
G Hyou1 hypoxia up-regulated 1 JBrowse link NW_004955412 20,149,104 20,161,378 RGD:9068941
G Klhl12 kelch like family member 12 JBrowse link NW_004955406 38,903,233 38,931,756 RGD:9068941
G Lmf1 lipase maturation factor 1 JBrowse link NW_004955442 16,250,131 16,360,907 RGD:9068941
G Mia3 MIA SH3 domain ER export factor 3 JBrowse link NW_004955520 1,853,145 1,890,338 RGD:9068941
G Nrbp1 nuclear receptor binding protein 1 JBrowse link NW_004955469 9,396,464 9,416,569 RGD:9068941
G Pdcd6 programmed cell death 6 JBrowse link NW_004955504 75,378 94,654 RGD:9068941
G Pef1 penta-EF-hand domain containing 1 JBrowse link NW_004955452 10,038,380 10,055,871 RGD:9068941
G Preb prolactin regulatory element binding JBrowse link NW_004955469 9,097,579 9,101,361 RGD:9068941
G Rab1a RAB1A, member RAS oncogene family JBrowse link NW_004955424 19,393,589 19,421,373 RGD:9068941
G Rab1b RAB1B, member RAS oncogene family JBrowse link NW_004955422 19,039,741 19,047,088 RGD:9068941
G Rab29 RAB29, member RAS oncogene family JBrowse link NW_004955406 41,452,733 41,468,467 RGD:9068941
G Rab2a RAB2A, member RAS oncogene family JBrowse link NW_004955444 18,091,640 18,169,971 RGD:9068941
G Rangrf RAN guanine nucleotide release factor JBrowse link NW_004955467 8,622,843 8,624,401 RGD:9068941
G Sec13 SEC13 homolog, nuclear pore and COPII coat complex component JBrowse link NW_004955561 1,707,053 1,723,715 RGD:9068941
G Sec16a SEC16 homolog A, endoplasmic reticulum export factor JBrowse link NW_004955513 4,272,623 4,304,314 RGD:9068941
G Sec16b SEC16 homolog B, endoplasmic reticulum export factor JBrowse link NW_004955406 17,458,699 17,509,379 RGD:9068941
G Sec22a SEC22 homolog A, vesicle trafficking protein JBrowse link NW_004955427 22,389,552 22,456,149 RGD:9068941
G Sec24a SEC24 homolog A, COPII coat complex component JBrowse link NW_004955408 5,803,438 5,850,879 RGD:9068941
G Sec24b SEC24 homolog B, COPII coat complex component JBrowse link NW_004955496 666,728 732,829 RGD:9068941
G Sec24c SEC24 homolog C, COPII coat complex component JBrowse link NW_004955437 18,132,969 18,161,167 RGD:9068941
G Sec24d SEC24 homolog D, COPII coat complex component JBrowse link NW_004955428 21,381,809 21,475,329 RGD:9068941
G Spast spastin JBrowse link NW_004955441 471,609 521,920 RGD:9068941
G Stx17 syntaxin 17 JBrowse link NW_004955419 25,674,771 25,741,357 RGD:9068941
G Stx5 syntaxin 5 JBrowse link NW_004955599 414,338 438,581 RGD:9068941
G Tbc1d20 TBC1 domain family member 20 JBrowse link NW_004955597 291,541 313,799 RGD:9068941
G Tfg trafficking from ER to golgi regulator JBrowse link NW_004955427 2,328,676 2,362,050 RGD:9068941
G Trappc11 trafficking protein particle complex 11 JBrowse link NW_004955403 25,168,212 25,211,344 RGD:9068941
G Trappc12 trafficking protein particle complex 12 JBrowse link NW_004955487 3,824,872 3,863,859 RGD:9068941
G Trappc3 trafficking protein particle complex 3 JBrowse link NW_004955452 14,160,612 14,172,896 RGD:9068941
G Trappc4 trafficking protein particle complex 4 JBrowse link NW_004955412 20,129,154 20,133,043 RGD:9068941
G Uso1 USO1 vesicle transport factor JBrowse link NW_004955474 1,647,670 1,704,869 RGD:9068941
G Vamp4 vesicle associated membrane protein 4 JBrowse link NW_004955406 12,223,736 12,260,506 RGD:9068941
G Vamp7 vesicle associated membrane protein 7 JBrowse link NW_004955594 20,496 72,648 RGD:9068941
G Vapa VAMP associated protein A JBrowse link NW_004955402 2,274,248 2,309,461 RGD:9068941
G Vapb VAMP associated protein B and C JBrowse link NW_004955445 1,098,454 1,122,879 RGD:9068941
G Vcp valosin containing protein JBrowse link NW_004955472 1,111,649 1,124,076 RGD:9068941
G Vti1a vesicle transport through interaction with t-SNAREs 1A JBrowse link NW_004955431 17,542,605 17,910,809 RGD:9068941
G Whamm WASP homolog associated with actin, golgi membranes and microtubules JBrowse link NW_004955416 13,825,925 13,849,883 RGD:9068941
G Yif1b Yip1 interacting factor homolog B, membrane trafficking protein JBrowse link NW_004955468 1,123,924 1,133,292 RGD:9068941
G Ykt6 YKT6 v-SNARE homolog JBrowse link NW_004955456 7,764,125 7,776,429 RGD:9068941
G Zw10 zw10 kinetochore protein JBrowse link NW_004955412 15,354,918 15,391,233 RGD:9068941
COPII vesicle coating term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cul3 cullin 3 JBrowse link NW_004955453 9,546,554 9,629,976 RGD:9068941
G Klhl12 kelch like family member 12 JBrowse link NW_004955406 38,903,233 38,931,756 RGD:9068941
G Pdcd6 programmed cell death 6 JBrowse link NW_004955504 75,378 94,654 RGD:9068941
G Pef1 penta-EF-hand domain containing 1 JBrowse link NW_004955452 10,038,380 10,055,871 RGD:9068941
G Preb prolactin regulatory element binding JBrowse link NW_004955469 9,097,579 9,101,361 RGD:9068941
COPII-coated vesicle budding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Vapa VAMP associated protein A JBrowse link NW_004955402 2,274,248 2,309,461 RGD:9068941
G Vapb VAMP associated protein B and C JBrowse link NW_004955445 1,098,454 1,122,879 RGD:9068941
COPII-coated vesicle cargo loading term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mia3 MIA SH3 domain ER export factor 3 JBrowse link NW_004955520 1,853,145 1,890,338 RGD:9068941
G Rab1a RAB1A, member RAS oncogene family JBrowse link NW_004955424 19,393,589 19,421,373 RGD:9068941
G Sar1a secretion associated Ras related GTPase 1A JBrowse link NW_004955437 21,075,632 21,093,608 RGD:9068941
G Sec13 SEC13 homolog, nuclear pore and COPII coat complex component JBrowse link NW_004955561 1,707,053 1,723,715 RGD:9068941
G Sec23a Sec23 homolog A, COPII coat complex component JBrowse link NW_004955409 22,192,549 22,243,090 RGD:9068941
G Sec24a SEC24 homolog A, COPII coat complex component JBrowse link NW_004955408 5,803,438 5,850,879 RGD:9068941
G Sec24b SEC24 homolog B, COPII coat complex component JBrowse link NW_004955496 666,728 732,829 RGD:9068941
G Sec24c SEC24 homolog C, COPII coat complex component JBrowse link NW_004955437 18,132,969 18,161,167 RGD:9068941
G Sec24d SEC24 homolog D, COPII coat complex component JBrowse link NW_004955428 21,381,809 21,475,329 RGD:9068941
G Sec31a SEC31 homolog A, COPII coat complex component JBrowse link NW_004955433 6,830,732 6,891,259 RGD:9068941
G Tbc1d20 TBC1 domain family member 20 JBrowse link NW_004955597 291,541 313,799 RGD:9068941
negative regulation of cargo loading into COPII-coated vesicle term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Insig1 insulin induced gene 1 JBrowse link NW_004955491 8,333,624 8,344,658 RGD:9068941
G Sar1a secretion associated Ras related GTPase 1A JBrowse link NW_004955437 21,075,632 21,093,608 RGD:9068941
positive regulation of ER to Golgi vesicle-mediated transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arf1 ADP ribosylation factor 1 JBrowse link NW_004955581 319,942 335,112 RGD:9068941
G Sorl1 sortilin related receptor 1 JBrowse link NW_004955412 22,421,984 22,576,179 RGD:9068941
G Stx18 syntaxin 18 JBrowse link NW_004955514 5,168,143 5,272,655 RGD:9068941
G Tbc1d20 TBC1 domain family member 20 JBrowse link NW_004955597 291,541 313,799 RGD:9068941
regulation of cargo loading into COPII-coated vesicle term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sar1a secretion associated Ras related GTPase 1A JBrowse link NW_004955437 21,075,632 21,093,608 RGD:9068941
G Sec24b SEC24 homolog B, COPII coat complex component JBrowse link NW_004955496 666,728 732,829 RGD:9068941
regulation of COPII vesicle coating term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mapk15 mitogen-activated protein kinase 15 JBrowse link NW_004955454 2,413,393 2,420,703 RGD:9068941
regulation of ER to Golgi vesicle-mediated transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gas1 growth arrest specific 1 JBrowse link NW_004955432 727,784 729,096 RGD:9068941
G Lrrk2 leucine rich repeat kinase 2 JBrowse link NW_004955505 84,324 216,923 RGD:9068941
G Rint1 RAD50 interactor 1 JBrowse link NW_004955410 10,121,322 10,144,748 RGD:9068941
G Rnf139 ring finger protein 139 JBrowse link NW_004955540 3,140,649 3,153,546 RGD:9068941
G Scfd1 sec1 family domain containing 1 JBrowse link NW_004955409 29,805,909 29,903,208 RGD:9068941
G Use1 unconventional SNARE in the ER 1 JBrowse link NW_004955524 969,181 973,469 RGD:9068941
G Yipf5 Yip1 domain family member 5 JBrowse link NW_004955415 9,795,214 9,809,871 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11825
    localization 4738
      cellular localization 2285
        intracellular transport 1042
          endoplasmic reticulum to Golgi vesicle-mediated transport 71
            COPII vesicle uncoating + 0
            COPII-coated vesicle budding + 20
            endoplasmic reticulum-Golgi intermediate compartment (ERGIC) derived vesicle fusion with Golgi cis cisterna membrane 0
            endoplasmic reticulum-derived vesicle fusion with endoplasmic reticulum-Golgi intermediate compartment (ERGIC) membrane 0
            positive regulation of ER to Golgi vesicle-mediated transport 4
            regulation of ER to Golgi vesicle-mediated transport + 15
            vesicle targeting, rough ER to cis-Golgi + 6
Path 2
Term Annotations click to browse term
  biological_process 11825
    localization 4738
      establishment of localization 3419
        transport 3275
          vesicle-mediated transport 1106
            Golgi vesicle transport 191
              endoplasmic reticulum to Golgi vesicle-mediated transport 71
                COPII vesicle uncoating + 0
                COPII-coated vesicle budding + 20
                endoplasmic reticulum-Golgi intermediate compartment (ERGIC) derived vesicle fusion with Golgi cis cisterna membrane 0
                endoplasmic reticulum-derived vesicle fusion with endoplasmic reticulum-Golgi intermediate compartment (ERGIC) membrane 0
                positive regulation of ER to Golgi vesicle-mediated transport 4
                regulation of ER to Golgi vesicle-mediated transport + 15
                vesicle targeting, rough ER to cis-Golgi + 6
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.