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ONTOLOGY REPORT - ANNOTATIONS


Term:vesicle coating
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Accession:GO:0006901 term browser browse the term
Definition:A protein coat is added to the vesicle to form the proper shape of the vesicle and to target the vesicle for transport to its destination.
Synonyms:broad_synonym: vesicle coat assembly


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COPI coating of Golgi vesicle term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arfgap2 ADP-ribosylation factor GTPase activating protein 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:80,081,541...80,093,659
Ensembl chr 3:80,081,647...80,093,658
JBrowse link
G Arfgap3 ADP-ribosylation factor GTPase activating protein 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:124,149,665...124,198,298
Ensembl chr 7:124,149,751...124,198,200
JBrowse link
G Gbf1 golgi brefeldin A resistant guanine nucleotide exchange factor 1 ISO (PMID:12047556), (PMID:17956946) RGD PMID:12047556, PMID:17956946 NCBI chr 1:265,904,616...266,033,107
Ensembl chr 1:265,904,566...266,033,156
JBrowse link
G Tmed9 transmembrane p24 trafficking protein 9 ISO
IBA
(PMID:18287528)
PMID:21873635
RGD PMID:18287528, PMID:21873635 RGD:13792537 NCBI chr17:9,560,735...9,565,249
Ensembl chr17:9,560,761...9,565,249
JBrowse link
COPII vesicle coating term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cul3 cullin 3 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:22358839)
Ensembl
UniProt
RGD
PMID:22358839 GO_REF:0000024, GO_REF:0000107 NCBI chr 9:86,044,485...86,129,066
Ensembl chr 9:86,044,485...86,129,329
JBrowse link
G Klhl12 kelch-like family member 12 IEA
IBA
ISO
ISS
GO_REF:0000107
PMID:21873635
(PMID:22358839), (PMID:27716508)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:22358839, PMID:27716508, PMID:21873635 GO_REF:0000024, GO_REF:0000107, RGD:13792537 NCBI chr13:51,280,933...51,314,753
Ensembl chr13:51,282,684...51,314,797
JBrowse link
G Pdcd6 programmed cell death 6 ISO
ISS
(PMID:27716508)
GO_REF:0000024
RGD
UniProt
PMID:27716508 GO_REF:0000024 NCBI chr 1:31,576,183...31,591,852
Ensembl chr 1:31,576,183...31,591,849
JBrowse link
G Pef1 penta-EF hand domain containing 1 ISO
IBA
ISS
(PMID:27716508)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:27716508, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 5:148,320,610...148,343,876
Ensembl chr 5:148,320,438...148,343,886
JBrowse link
G Preb prolactin regulatory element binding IDA PMID:11422940 UniProt PMID:11422940 RGD:11344947 NCBI chr 6:26,784,088...26,787,875
Ensembl chr 6:26,784,088...26,787,874
JBrowse link
G Sec16a SEC16 homolog A, endoplasmic reticulum export factor IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:3,856,218...3,890,785
Ensembl chr 3:3,856,218...3,890,758
JBrowse link
G Sec16b SEC16 homolog B, endoplasmic reticulum export factor IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:75,153,074...75,216,941
Ensembl chr13:75,175,254...75,216,941
JBrowse link
G Tfg trafficking from ER to golgi regulator IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr11:46,180,189...46,206,723
Ensembl chr11:46,179,940...46,206,721
JBrowse link
regulation of COPII vesicle coating term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mapk15 mitogen-activated protein kinase 15 ISS
ISO
IEA
GO_REF:0000024
(PMID:24618899)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:24618899 GO_REF:0000024, GO_REF:0000107 NCBI chr 7:117,041,287...117,061,799
Ensembl chr 7:117,055,395...117,061,047
JBrowse link
G Preb prolactin regulatory element binding IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:26,784,088...26,787,875
Ensembl chr 6:26,784,088...26,787,874
JBrowse link
G Sar1b secretion associated, Ras related GTPase 1B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:37,215,989...37,245,603
Ensembl chr10:37,215,937...37,245,658
JBrowse link
synaptic vesicle coating term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cltb clathrin, light chain B NAS PMID:3563513 UniProt PMID:3563513 RGD:70686 NCBI chr17:10,537,348...10,554,999
Ensembl chr17:10,537,365...10,554,989
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    cellular process 18788
      vesicle-mediated transport 1652
        vesicle budding from membrane 70
          vesicle coating 15
            COPII vesicle coating + 10
            Golgi transport vesicle coating + 4
            synaptic vesicle coating 1
Path 2
Term Annotations click to browse term
  biological_process 20014
    cellular process 18788
      cellular component organization or biogenesis 6766
        cellular component organization 6510
          organelle organization 4073
            vesicle organization 295
              vesicle budding from membrane 70
                vesicle coating 15
                  COPII vesicle coating + 10
                  Golgi transport vesicle coating + 4
                  synaptic vesicle coating 1
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.