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ONTOLOGY REPORT - ANNOTATIONS


Term:vesicle targeting
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Accession:GO:0006903 term browser browse the term
Definition:The process in which vesicles are directed to specific destination membranes. Targeting involves coordinated interactions among cytoskeletal elements (microtubules or actin filaments), motor proteins, molecules at the vesicle membrane and target membrane surfaces, and vesicle cargo.


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vesicle targeting term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ahi1 Abelson helper integration site 1 JBrowse link 1 16,478,127 16,601,769 RGD:1624291
G Chp1 calcineurin-like EF-hand protein 1 JBrowse link 3 111,354,506 111,389,998 RGD:724726
G Clasp1 cytoplasmic linker associated protein 1 JBrowse link 13 34,365,038 34,584,651 RGD:1624291
G Clasp2 cytoplasmic linker associated protein 2 JBrowse link 8 122,003,719 122,185,495 RGD:1624291
G Exoc4 exocyst complex component 4 JBrowse link 4 60,549,128 61,358,305 RGD:8554028
G Map4k2 mitogen activated protein kinase kinase kinase kinase 2 JBrowse link 1 221,710,622 221,726,274 RGD:1624291
G Myh9 myosin, heavy chain 9 JBrowse link 7 118,740,005 118,792,507 RGD:1624291
G Stx2 syntaxin 2 JBrowse link 12 31,324,203 31,360,249 RGD:1298910
RGD:728629
G Tmed10 transmembrane p24 trafficking protein 10 JBrowse link 6 109,169,739 109,205,004 RGD:68840
G Tmed2 transmembrane p24 trafficking protein 2 JBrowse link 12 37,471,259 37,480,344 RGD:68840
G Ykt6 YKT6 v-SNARE homolog JBrowse link 14 86,196,018 86,207,057 RGD:1624291
RGD:8553660
COPI coating of Golgi vesicle term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arfgap2 ADP-ribosylation factor GTPase activating protein 2 JBrowse link 3 80,081,541 80,093,659 RGD:13792537
G Arfgap3 ADP-ribosylation factor GTPase activating protein 3 JBrowse link 7 124,149,665 124,198,298 RGD:13792537
G Gbf1 golgi brefeldin A resistant guanine nucleotide exchange factor 1 JBrowse link 1 265,904,616 266,033,107 RGD:1624291
G Tmed9 transmembrane p24 trafficking protein 9 JBrowse link 17 9,560,735 9,565,249 RGD:1624291
RGD:13792537
COPI-coated vesicle budding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tmed10 transmembrane p24 trafficking protein 10 JBrowse link 6 109,169,739 109,205,004 RGD:1624291
RGD:1600115
COPII vesicle coating term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cul3 cullin 3 JBrowse link 9 86,044,485 86,129,066 RGD:1600115
RGD:1624291
G Klhl12 kelch-like family member 12 JBrowse link 13 51,280,933 51,314,753 RGD:1600115
RGD:13792537
RGD:1624291
G Pdcd6 programmed cell death 6 JBrowse link 1 31,576,183 31,591,852 RGD:1624291
RGD:1600115
G Pef1 penta-EF hand domain containing 1 JBrowse link 5 148,320,610 148,343,876 RGD:1624291
RGD:13792537
RGD:1600115
G Preb prolactin regulatory element binding JBrowse link 6 26,784,088 26,787,875 RGD:11344947
G Sec16a SEC16 homolog A, endoplasmic reticulum export factor JBrowse link 3 3,856,218 3,890,785 RGD:13792537
G Sec16b SEC16 homolog B, endoplasmic reticulum export factor JBrowse link 13 75,153,074 75,216,941 RGD:13792537
G Tfg trafficking from ER to golgi regulator JBrowse link 11 46,180,189 46,206,723 RGD:1600115
regulation of COPII vesicle coating term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mapk15 mitogen-activated protein kinase 15 JBrowse link 7 117,041,287 117,061,799 RGD:1600115
RGD:1624291
G Preb prolactin regulatory element binding JBrowse link 6 26,784,088 26,787,875 RGD:13792537
G Sar1b secretion associated, Ras related GTPase 1B JBrowse link 10 37,215,989 37,245,603 RGD:13792537
regulation of vesicle targeting, to, from or within Golgi term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gosr1 golgi SNAP receptor complex member 1 JBrowse link 10 63,405,526 63,442,257 RGD:13792537
synaptic vesicle targeting term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nlgn1 neuroligin 1 JBrowse link 2 111,057,291 111,973,681 RGD:1624291
RGD:1600115
G Pclo piccolo (presynaptic cytomatrix protein) JBrowse link 4 16,454,904 17,058,921 RGD:69383
G Psen1 presenilin 1 JBrowse link 6 107,169,514 107,221,000 RGD:1624291
G Scrib scribble planar cell polarity protein JBrowse link 7 117,105,810 117,128,802 RGD:1624291
vesicle targeting, to, from or within Golgi term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tmed10 transmembrane p24 trafficking protein 10 JBrowse link 6 109,169,739 109,205,004 RGD:2317246
RGD:1624291
vesicle targeting, trans-Golgi to endosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ap1ar adaptor-related protein complex 1 associated regulatory protein JBrowse link 2 232,146,418 232,178,813 RGD:1624291
RGD:13792537
G Wipi1 WD repeat domain, phosphoinositide interacting 1 JBrowse link 10 97,859,730 97,896,949 RGD:1624291
vesicle targeting, trans-Golgi to periciliary membrane compartment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cep19 centrosomal protein 19 JBrowse link 11 71,921,713 71,938,335 RGD:1600115
RGD:13792537
RGD:1624291
vesicle tethering involved in exocytosis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Exoc4 exocyst complex component 4 JBrowse link 4 60,549,128 61,358,305 RGD:1600115
vesicle tethering to endoplasmic reticulum term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Stard3 StAR-related lipid transfer domain containing 3 JBrowse link 10 86,313,430 86,335,868 RGD:1624291
G Stard3nl STARD3 N-terminal like JBrowse link 17 47,662,553 47,696,453 RGD:1624291
vesicle tethering to Golgi term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fam91a1 family with sequence similarity 91, member A1 JBrowse link 7 98,302,803 98,341,201 RGD:1624291
RGD:13792537
G RGD1310429 similar to Protein Njmu-R1 JBrowse link 10 67,738,131 67,751,049 RGD:1624291
RGD:13792537
G Tbc1d23 TBC1 domain family, member 23 JBrowse link 11 45,401,396 45,459,841 RGD:1624291
G Trip11 thyroid hormone receptor interactor 11 JBrowse link 6 125,741,520 125,812,926 RGD:1624291
G Wdr11 WD repeat domain 11 JBrowse link 1 202,770,810 202,816,336 RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19858
    cellular process 18617
      vesicle targeting 40
        contractile vacuole tethering involved in discharge 0
        synaptic vesicle targeting 4
        vesicle targeting to fusome 0
        vesicle targeting, plasma membrane to endosome + 0
        vesicle targeting, to, from or within Golgi + 19
        vesicle tethering + 8
Path 2
Term Annotations click to browse term
  biological_process 19858
    localization 6457
      cellular localization 2931
        organelle localization 556
          vesicle localization 175
            establishment of vesicle localization 156
              vesicle targeting 40
                contractile vacuole tethering involved in discharge 0
                synaptic vesicle targeting 4
                vesicle targeting to fusome 0
                vesicle targeting, plasma membrane to endosome + 0
                vesicle targeting, to, from or within Golgi + 19
                vesicle tethering + 8
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.