ONTOLOGY REPORT - ANNOTATIONS


Term:vesicle targeting
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Accession:GO:0006903 term browser browse the term
Definition:The process in which vesicles are directed to specific destination membranes. Targeting involves coordinated interactions among cytoskeletal elements (microtubules or actin filaments), motor proteins, molecules at the vesicle membrane and target membrane surfaces, and vesicle cargo.


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vesicle targeting term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ap1m2 adaptor related protein complex 1 subunit mu 2 JBrowse link NW_004936659 844,563 854,556 RGD:9068941
G Clasp1 cytoplasmic linker associated protein 1 JBrowse link NW_004936469 49,067,357 49,335,212 RGD:9068941
G Clasp2 cytoplasmic linker associated protein 2 JBrowse link NW_004936473 23,756,291 23,940,966 RGD:9068941
G Lrmp lymphoid restricted membrane protein JBrowse link NW_004936548 2,197,298 2,240,495 RGD:9068941
G Map4k2 mitogen-activated protein kinase kinase kinase kinase 2 JBrowse link NW_004936599 4,511,348 4,526,284 RGD:9068941
G Snap23 synaptosome associated protein 23 JBrowse link NW_004936471 5,784,070 5,818,644 RGD:9068941
G Snap29 synaptosome associated protein 29 JBrowse link NW_004936619 2,377,284 2,402,049 RGD:9068941
G Ykt6 YKT6 v-SNARE homolog JBrowse link NW_004936478 19,166,225 19,179,060 RGD:9068941
COPI coating of Golgi vesicle term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arfgap2 ADP ribosylation factor GTPase activating protein 2 JBrowse link NW_004936562 1,996,000 2,005,850 RGD:9068941
G Arfgap3 ADP ribosylation factor GTPase activating protein 3 JBrowse link NW_004936718 674,177 714,204 RGD:9068941
G Gbf1 golgi brefeldin A resistant guanine nucleotide exchange factor 1 JBrowse link NW_004936600 3,479,045 3,604,241 RGD:9068941
G Tmed10 transmembrane p24 trafficking protein 10 JBrowse link NW_004936488 4,265,731 4,303,895 RGD:9068941
G Tmed2 transmembrane p24 trafficking protein 2 JBrowse link NW_004936558 1,223,114 1,258,699 RGD:9068941
COPI-coated vesicle budding term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tmed10 transmembrane p24 trafficking protein 10 JBrowse link NW_004936488 4,265,731 4,303,895 RGD:9068941
COPII vesicle coating term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ankrd28 ankyrin repeat domain 28 JBrowse link NW_004936473 8,550,851 8,730,845 RGD:9068941
G Areg amphiregulin JBrowse link NW_004936598 1,276,599 1,283,612 RGD:9068941
G Bet1 Bet1 golgi vesicular membrane trafficking protein JBrowse link NW_004936585 6,036,452 6,044,827 RGD:9068941
G Cd59 CD59 molecule (CD59 blood group) JBrowse link NW_004936533 4,242,589 4,263,136 RGD:9068941
G Cnih1 cornichon family AMPA receptor auxiliary protein 1 JBrowse link NW_004936697 652,562 668,998 RGD:9068941
G Cnih2 cornichon family AMPA receptor auxiliary protein 2 JBrowse link NW_004936599 3,310,873 3,316,575 RGD:9068941
G Cnih3 cornichon family AMPA receptor auxiliary protein 3 JBrowse link NW_004936526 1,710,641 1,723,422 RGD:9068941
G Col7a1 collagen type VII alpha 1 chain JBrowse link NW_004936529 348,938 381,701 RGD:9068941
G Csnk1d casein kinase 1 delta JBrowse link NW_004936594 5,720,887 5,743,206 RGD:9068941
G Ctsc cathepsin C JBrowse link NW_004936736 1,201,343 1,240,311 RGD:9068941
G Ctsz cathepsin Z JBrowse link NW_004936530 1,482,007 1,490,685 RGD:9068941
G Cul3 cullin 3 JBrowse link NW_004936569 6,067,230 6,131,467 RGD:9068941
G F5 coagulation factor V JBrowse link NW_004936481 17,114,441 17,178,902 RGD:9068941
G F8 coagulation factor VIII JBrowse link NW_004936927 189,359 301,791 RGD:9068941
G Folr1 folate receptor alpha JBrowse link NW_004936498 1,489,916 1,497,200 RGD:9068941
G Golga2 golgin A2 JBrowse link NW_004936487 15,798,623 15,814,360 RGD:9068941
G Gorasp1 golgi reassembly stacking protein 1 JBrowse link NW_004936473 28,351,669 28,362,062 RGD:9068941
G Gosr2 golgi SNAP receptor complex member 2 JBrowse link NW_004936541 1,845,501 1,866,014 RGD:9068941
G Gria1 glutamate ionotropic receptor AMPA type subunit 1 JBrowse link NW_004936515 8,937,391 9,236,438 RGD:9068941
G Klhl12 kelch like family member 12 JBrowse link NW_004936567 1,681,421 1,714,150 RGD:9068941
G Lman1 lectin, mannose binding 1 JBrowse link NW_004936497 5,383,636 5,409,347 RGD:9068941
G Mcfd2 multiple coagulation factor deficiency 2 JBrowse link NW_004936508 5,392,275 5,419,267 RGD:9068941
G Napa NSF attachment protein alpha JBrowse link NW_004936664 1,155,557 1,178,626 RGD:9068941
G Nsf N-ethylmaleimide sensitive factor, vesicle fusing ATPase JBrowse link NW_004936541 1,989,092 2,137,006 RGD:9068941
G Pdcd6 programmed cell death 6 JBrowse link NW_004936815 1,129,367 1,144,020 RGD:9068941
G Pef1 penta-EF-hand domain containing 1 JBrowse link NW_004936474 14,745,812 14,761,279 RGD:9068941
G Ppp6c protein phosphatase 6 catalytic subunit JBrowse link NW_004936487 13,284,652 13,320,936 RGD:9068941
G Ppp6r1 protein phosphatase 6 regulatory subunit 1 JBrowse link NW_004936886 500,395 511,802 RGD:9068941
G Ppp6r3 protein phosphatase 6 regulatory subunit 3 JBrowse link NW_004936599 1,603,700 1,739,224 RGD:9068941
G Preb prolactin regulatory element binding JBrowse link NW_004936493 5,416,302 5,420,138 RGD:9068941
G Rab1a RAB1A, member RAS oncogene family JBrowse link NW_004936491 9,858,645 9,891,674 RGD:9068941
G Rab1b RAB1B, member RAS oncogene family JBrowse link NW_004936599 3,317,258 3,324,208 RGD:9068941
G Sar1b secretion associated Ras related GTPase 1B JBrowse link NW_004936647 697,930 723,577 RGD:9068941
G Scfd1 sec1 family domain containing 1 JBrowse link NW_004936494 5,410,219 5,501,687 RGD:9068941
G Sec13 SEC13 homolog, nuclear pore and COPII coat complex component JBrowse link NW_004936602 3,013,490 3,030,489 RGD:9068941
G Sec16a SEC16 homolog A, endoplasmic reticulum export factor JBrowse link NW_004936669 1,344,019 1,375,483 RGD:9068941
G Sec16b SEC16 homolog B, endoplasmic reticulum export factor JBrowse link NW_004936481 10,782,988 10,821,204 RGD:9068941
G Sec22b SEC22 homolog B, vesicle trafficking protein JBrowse link NW_004936872 294,116 313,893 RGD:9068941
G Sec23a Sec23 homolog A, coat complex II component JBrowse link NW_004936494 12,643,790 12,702,390 RGD:9068941
G Sec23ip SEC23 interacting protein JBrowse link NW_004936486 9,231,610 9,275,555 RGD:9068941
G Sec24a SEC24 homolog A, COPII coat complex component JBrowse link NW_004936647 612,640 689,963 RGD:9068941
G Sec24b SEC24 homolog B, COPII coat complex component JBrowse link NW_004936563 676,564 772,877 RGD:9068941
G Sec24c SEC24 homolog C, COPII coat complex component JBrowse link NW_004936521 5,374,555 5,402,123 RGD:9068941
G Sec24d SEC24 homolog D, COPII coat complex component JBrowse link NW_004936869 485,706 566,591 RGD:9068941
G Sec31a SEC31 homolog A, COPII coat complex component JBrowse link NW_004936738 1,664,916 1,741,739 RGD:9068941
G Stx5 syntaxin 5 JBrowse link NW_004936581 462,417 487,563 RGD:9068941
G Tbc1d20 TBC1 domain family member 20 JBrowse link NW_004936485 18,034,776 18,055,741 RGD:9068941
G Tfg trafficking from ER to golgi regulator JBrowse link NW_004936630 2,518,944 2,555,054 RGD:9068941
G Tgfa transforming growth factor alpha JBrowse link NW_004936491 14,659,089 14,758,614 RGD:9068941
G Tmed10 transmembrane p24 trafficking protein 10 JBrowse link NW_004936488 4,265,731 4,303,895 RGD:9068941
G Tmed2 transmembrane p24 trafficking protein 2 JBrowse link NW_004936558 1,223,114 1,258,699 RGD:9068941
G Trappc1 trafficking protein particle complex 1 JBrowse link NW_004936595 1,172,957 1,174,517 RGD:9068941
G Trappc10 trafficking protein particle complex 10 JBrowse link NW_004936500 264,716 317,419 RGD:9068941
G Trappc2 trafficking protein particle complex 2 JBrowse link NW_004936470 3,278,415 3,292,905 RGD:9068941
G Trappc2l trafficking protein particle complex 2 like JBrowse link NW_004936641 887,034 889,435 RGD:9068941
G Trappc3 trafficking protein particle complex 3 JBrowse link NW_004936474 18,622,302 18,635,216 RGD:9068941
G Trappc4 trafficking protein particle complex 4 JBrowse link NW_004936542 3,977,223 3,980,168 RGD:9068941
G Trappc5 trafficking protein particle complex 5 JBrowse link NW_004936588 4,714,133 4,715,711 RGD:9068941
G Trappc6a trafficking protein particle complex 6A JBrowse link NW_004936706 1,694,050 1,701,746 RGD:9068941
G Trappc6b trafficking protein particle complex 6B JBrowse link NW_004936494 12,740,268 12,758,697 RGD:9068941
G Trappc9 trafficking protein particle complex 9 JBrowse link NW_004936470 10,747,343 11,243,052 RGD:9068941
G Uso1 USO1 vesicle transport factor JBrowse link NW_004936598 172,360 246,565 RGD:9068941
regulation of COPII vesicle coating term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mapk15 mitogen-activated protein kinase 15 JBrowse link NW_004936470 8,420,850 8,425,996 RGD:9068941
G Preb prolactin regulatory element binding JBrowse link NW_004936493 5,416,302 5,420,138 RGD:9068941
G Sar1a secretion associated Ras related GTPase 1A JBrowse link NW_004936521 8,422,511 8,439,945 RGD:9068941
G Sar1b secretion associated Ras related GTPase 1B JBrowse link NW_004936647 697,930 723,577 RGD:9068941
regulation of vesicle targeting, to, from or within Golgi term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gosr1 golgi SNAP receptor complex member 1 JBrowse link NW_004936538 6,461,676 6,505,967 RGD:9068941
synaptic vesicle targeting term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nlgn1 neuroligin 1 JBrowse link NW_004936703 951,935 1,415,991 RGD:9068941
G Psen1 presenilin 1 JBrowse link NW_004936488 2,464,623 2,528,807 RGD:9068941
G Scrib scribble planar cell polarity protein JBrowse link NW_004936470 8,349,175 8,370,099 RGD:9068941
G Septin5 septin 5 JBrowse link NW_004936619 3,619,008 3,627,762 RGD:9068941
vesicle targeting, to, from or within Golgi term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tmed10 transmembrane p24 trafficking protein 10 JBrowse link NW_004936488 4,265,731 4,303,895 RGD:9068941
vesicle targeting, trans-Golgi to endosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ap1ar adaptor related protein complex 1 associated regulatory protein JBrowse link NW_004936563 3,108,242 3,144,957 RGD:9068941
G Wipi1 WD repeat domain, phosphoinositide interacting 1 JBrowse link NW_004936541 7,782,836 7,812,142 RGD:9068941
vesicle targeting, trans-Golgi to periciliary membrane compartment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cep19 centrosomal protein 19 JBrowse link NW_004936784 1,284,215 1,289,362 RGD:9068941
vesicle tethering to endoplasmic reticulum term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Stard3 StAR related lipid transfer domain containing 3 JBrowse link NW_004936490 14,832,067 14,856,330 RGD:9068941
G Stard3nl STARD3 N-terminal like JBrowse link NW_004936478 13,489,743 13,537,225 RGD:9068941
vesicle tethering to Golgi term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CUNH17orf75 chromosome unknown C17orf75 homolog JBrowse link NW_004936538 2,562,427 2,574,441 RGD:9068941
G Fam91a1 family with sequence similarity 91 member A1 JBrowse link NW_004936470 23,645,233 23,684,841 RGD:9068941
G Tbc1d23 TBC1 domain family member 23 JBrowse link NW_004936630 2,977,477 3,049,209 RGD:9068941
G Wdr11 WD repeat domain 11 JBrowse link NW_004936486 10,007,728 10,061,640 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 14770
    cellular process 13546
      vesicle targeting 89
        contractile vacuole tethering involved in discharge 0
        synaptic vesicle targeting 4
        vesicle targeting to fusome 0
        vesicle targeting, plasma membrane to endosome + 0
        vesicle targeting, to, from or within Golgi + 71
        vesicle tethering + 6
Path 2
Term Annotations click to browse term
  biological_process 14770
    localization 6014
      cellular localization 2776
        organelle localization 684
          vesicle localization 305
            establishment of vesicle localization 288
              vesicle targeting 89
                contractile vacuole tethering involved in discharge 0
                synaptic vesicle targeting 4
                vesicle targeting to fusome 0
                vesicle targeting, plasma membrane to endosome + 0
                vesicle targeting, to, from or within Golgi + 71
                vesicle tethering + 6
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.