Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:phagocytosis, recognition
go back to main search page
Accession:GO:0006910 term browser browse the term
Definition:The initial step in phagocytosis involving adhesion to bacteria, immune complexes and other particulate matter, or an apoptotic cell and based on recognition of factors such as bacterial cell wall components, opsonins like complement and antibody or protein receptors and lipids like phosphatidyl serine, and leading to intracellular signaling in the phagocytosing cell.
Comment:Note that cell surface molecules involved in the direct binding of bacteria may be also annotated to the molecular function term 'bacterial cell surface binding ; GO:0051635'. Note that cell surface molecules involved in the direct binding to opsonins such as complement components or antibodies may be also annotated to the term 'opsonin binding ; GO:0001846'.
Synonyms:exact_synonym: recognition of phagocytosed substance by phagocytic cell


show annotations for term's descendants       view all columns           Sort by:
 
phagocytosis, recognition term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adgrb1 adhesion G protein-coupled receptor B1 JBrowse link 15 74,516,196 74,589,465 RGD:2290270
G Cd209b CD209b antigen JBrowse link 8 3,917,655 3,926,841 RGD:2290270
G Cd36 CD36 molecule JBrowse link 5 17,781,690 17,888,959 RGD:2290270
G Colec12 collectin sub-family member 12 JBrowse link 18 9,707,648 9,877,995 RGD:2290270
G Fcgr1 Fc receptor, IgG, high affinity I JBrowse link 3 96,282,909 96,293,969 RGD:2290270
G Fcgr3 Fc receptor, IgG, low affinity III JBrowse link 1 171,051,169 171,065,915 RGD:2290270
G Igh-8 immunoglobulin heavy chain 8 (heavy chain of IgG3) RGD:2290270
G Igha immunoglobulin heavy constant alpha JBrowse link 12 113,256,204 113,260,236 RGD:2290270
G Ighd immunoglobulin heavy constant delta JBrowse link 12 113,407,535 113,416,324 RGD:2290270
G Ighe Immunoglobulin heavy constant epsilon JBrowse link 12 113,269,263 113,273,248 RGD:2290270
G Ighg Immunoglobulin heavy chain (gamma polypeptide) RGD:2290270
G Ighg1 immunoglobulin heavy constant gamma 1 (G1m marker) JBrowse link 12 113,326,541 113,330,523 RGD:2290270
G Ighg2a immunoglobulin heavy constant gamma 2A RGD:2290270
G Ighg2b immunoglobulin heavy constant gamma 2B JBrowse link 12 113,304,314 113,307,933 RGD:2290270
G Ighg2c immunoglobulin heavy constant gamma 2C JBrowse link 12 113,287,389 113,288,932 RGD:2290270
G Ighg3 Immunoglobulin heavy constant gamma 3 JBrowse link 12 113,357,442 113,361,232 RGD:2290270
G Ighm immunoglobulin heavy constant mu JBrowse link 12 113,418,826 113,422,730 RGD:2290270
G Ighv1-11 immunoglobulin heavy variable V1-11 JBrowse link 12 114,612,244 114,612,536 RGD:2290270
G Ighv1-12 immunoglobulin heavy variable V1-12 JBrowse link 12 114,615,850 114,616,143 RGD:2290270
G Ighv1-15 immunoglobulin heavy variable 1-15 JBrowse link 12 114,657,353 114,657,646 RGD:2290270
G Ighv1-16 immunoglobulin heavy variable 1-16 JBrowse link 12 114,665,872 114,666,165 RGD:2290270
G Ighv1-18 immunoglobulin heavy variable V1-18 JBrowse link 12 114,682,632 114,682,925 RGD:2290270
G Ighv1-19 immunoglobulin heavy variable V1-19 JBrowse link 12 114,708,648 114,708,941 RGD:2290270
G Ighv1-20 immunoglobulin heavy variable V1-20 JBrowse link 12 114,723,772 114,724,065 RGD:2290270
G Ighv1-22 immunoglobulin heavy variable 1-22 JBrowse link 12 114,746,273 114,746,566 RGD:2290270
G Ighv1-23 immunoglobulin heavy variable V1-23 JBrowse link 12 114,764,450 114,764,743 RGD:2290270
G Ighv1-24 immunoglobulin heavy variable V1-24 JBrowse link 12 114,772,928 114,773,221 RGD:2290270
G Ighv1-26 immunoglobulin heavy variable 1-26 JBrowse link 12 114,788,372 114,788,665 RGD:2290270
G Ighv1-31 immunoglobulin heavy variable 1-31 JBrowse link 12 114,829,264 114,829,557 RGD:2290270
G Ighv1-34 immunoglobulin heavy variable 1-34 JBrowse link 12 114,851,190 114,851,483 RGD:2290270
G Ighv1-36 immunoglobulin heavy variable 1-36 JBrowse link 12 114,879,888 114,880,181 RGD:2290270
G Ighv1-37 immunoglobulin heavy variable 1-37 JBrowse link 12 114,896,238 114,896,531 RGD:2290270
G Ighv1-39 immunoglobulin heavy variable 1-39 JBrowse link 12 114,914,599 114,914,892 RGD:2290270
G Ighv1-4 immunoglobulin heavy variable 1-4 JBrowse link 12 114,487,136 114,487,429 RGD:2290270
G Ighv1-42 immunoglobulin heavy variable V1-42 JBrowse link 12 114,937,154 114,937,544 RGD:2290270
G Ighv1-43 immunoglobulin heavy variable V1-43 JBrowse link 12 114,945,950 114,946,243 RGD:2290270
G Ighv1-47 immunoglobulin heavy variable 1-47 JBrowse link 12 114,991,108 114,991,401 RGD:2290270
G Ighv1-49 immunoglobulin heavy variable 1-49 JBrowse link 12 115,055,223 115,055,516 RGD:2290270
G Ighv1-5 immunoglobulin heavy variable V1-5 JBrowse link 12 114,513,330 114,513,623 RGD:2290270
G Ighv1-50 immunoglobulin heavy variable 1-50 JBrowse link 12 115,119,748 115,120,041 RGD:2290270
G Ighv1-52 immunoglobulin heavy variable 1-52 JBrowse link 12 115,145,487 115,145,780 RGD:2290270
G Ighv1-53 immunoglobulin heavy variable 1-53 JBrowse link 12 115,158,445 115,158,835 RGD:2290270
G Ighv1-54 immunoglobulin heavy variable V1-54 JBrowse link 12 115,193,675 115,193,968 RGD:2290270
G Ighv1-55 immunoglobulin heavy variable 1-55 JBrowse link 12 115,208,137 115,208,527 RGD:2290270
G Ighv1-56 immunoglobulin heavy variable 1-56 JBrowse link 12 115,242,802 115,243,095 RGD:2290270
G Ighv1-58 immunoglobulin heavy variable 1-58 JBrowse link 12 115,312,166 115,312,597 RGD:2290270
G Ighv1-59 immunoglobulin heavy variable V1-59 JBrowse link 12 115,335,057 115,335,513 RGD:2290270
G Ighv1-61 immunoglobulin heavy variable 1-61 JBrowse link 12 115,359,140 115,359,433 RGD:2290270
G Ighv1-62-1 immunoglobulin heavy variable 1-62-1 JBrowse link 12 115,386,707 115,386,988 RGD:2290270
G Ighv1-62-2 immunoglobulin heavy variable 1-62-2 JBrowse link 12 115,446,417 115,446,710 RGD:2290270
G Ighv1-62-3 immunoglobulin heavy variable 1-62-3 JBrowse link 12 115,460,999 115,461,431 RGD:2290270
G Ighv1-63 immunoglobulin heavy variable V1-63 JBrowse link 12 115,495,625 115,496,058 RGD:2290270
G Ighv1-64 immunoglobulin heavy variable 1-64 JBrowse link 12 115,507,587 115,507,977 RGD:2290270
G Ighv1-66 immunoglobulin heavy variable 1-66 JBrowse link 12 115,593,110 115,593,403 RGD:2290270
G Ighv1-67 immunoglobulin heavy variable V1-67 JBrowse link 12 115,603,940 115,604,233 RGD:2290270
G Ighv1-69 immunoglobulin heavy variable 1-69 JBrowse link 12 115,623,203 115,623,595 RGD:2290270
G Ighv1-7 immunoglobulin heavy variable V1-7 JBrowse link 12 114,538,495 114,538,788 RGD:2290270
G Ighv1-72 immunoglobulin heavy variable 1-72 JBrowse link 12 115,757,984 115,758,277 RGD:2290270
G Ighv1-74 immunoglobulin heavy variable V1-74 JBrowse link 12 115,802,690 115,803,080 RGD:2290270
G Ighv1-75 immunoglobulin heavy variable 1-75 JBrowse link 12 115,833,950 115,834,243 RGD:2290270
G Ighv1-76 immunoglobulin heavy variable 1-76 JBrowse link 12 115,847,881 115,848,174 RGD:2290270
G Ighv1-77 immunoglobulin heavy variable 1-77 JBrowse link 12 115,861,867 115,862,160 RGD:2290270
G Ighv1-78 immunoglobulin heavy variable 1-78 JBrowse link 12 115,868,773 115,869,066 RGD:2290270
G Ighv1-80 immunoglobulin heavy variable 1-80 JBrowse link 12 115,912,344 115,912,637 RGD:2290270
G Ighv1-81 immunoglobulin heavy variable 1-81 JBrowse link 12 115,920,279 115,920,572 RGD:2290270
G Ighv1-82 immunoglobulin heavy variable 1-82 JBrowse link 12 115,952,538 115,952,831 RGD:2290270
G Ighv1-84 immunoglobulin heavy variable 1-84 JBrowse link 12 115,980,702 115,981,134 RGD:2290270
G Ighv1-85 immunoglobulin heavy variable 1-85 JBrowse link 12 116,000,028 116,000,321 RGD:2290270
G Ighv1-9 immunoglobulin heavy variable V1-9 JBrowse link 12 114,583,569 114,583,862 RGD:2290270
G Ighv10-1 immunoglobulin heavy variable 10-1 JBrowse link 12 114,479,007 114,479,451 RGD:2290270
G Ighv10-3 immunoglobulin heavy variable V10-3 JBrowse link 12 114,523,441 114,523,887 RGD:2290270
G Ighv11-1 immunoglobulin heavy variable 11-1 JBrowse link 12 113,981,879 113,982,174 RGD:2290270
G Ighv11-2 immunoglobulin heavy variable V11-2 JBrowse link 12 114,048,241 114,048,704 RGD:2290270
G Ighv12-3 immunoglobulin heavy variable V12-3 JBrowse link 12 114,366,526 114,366,819 RGD:2290270
G Ighv13-2 immunoglobulin heavy variable 13-2 JBrowse link 12 114,357,761 114,358,060 RGD:2290270
G Ighv14-1 immunoglobulin heavy variable 14-1 JBrowse link 12 113,931,953 113,932,246 RGD:2290270
G Ighv14-2 immunoglobulin heavy variable 14-2 JBrowse link 12 113,994,469 113,994,898 RGD:2290270
G Ighv14-3 immunoglobulin heavy variable V14-3 JBrowse link 12 114,059,845 114,060,273 RGD:2290270
G Ighv14-4 immunoglobulin heavy variable 14-4 JBrowse link 12 114,176,438 114,176,867 RGD:2290270
G Ighv15-2 immunoglobulin heavy variable V15-2 JBrowse link 12 114,564,578 114,564,874 RGD:2290270
G Ighv16-1 immunoglobulin heavy variable 16-1 JBrowse link 12 114,068,828 114,069,126 RGD:2290270
G Ighv2-2 immunoglobulin heavy variable 2-2 JBrowse link 12 113,588,267 113,588,700 RGD:2290270
G Ighv2-3 immunoglobulin heavy variable 2-3 JBrowse link 12 113,611,184 113,611,476 RGD:2290270
G Ighv2-4 immunoglobulin heavy variable V2-4 JBrowse link 12 113,653,291 113,653,583 RGD:2290270
G Ighv2-5 immunoglobulin heavy variable 2-5 JBrowse link 12 113,685,482 113,685,774 RGD:2290270
G Ighv2-6 immunoglobulin heavy variable 2-6 JBrowse link 12 113,716,672 113,716,962 RGD:2290270
G Ighv2-6-8 immunoglobulin heavy variable 2-6-8 JBrowse link 12 113,796,138 113,796,430 RGD:2290270
G Ighv2-7 immunoglobulin heavy variable 2-7 JBrowse link 12 113,807,314 113,807,747 RGD:2290270
G Ighv2-9 immunoglobulin heavy variable 2-9 JBrowse link 12 113,879,097 113,879,388 RGD:2290270
G Ighv2-9-1 immunoglobulin heavy variable 2-9-1 JBrowse link 12 113,769,857 113,770,142 RGD:2290270
G Ighv3-1 immunoglobulin heavy variable 3-1 JBrowse link 12 113,964,390 113,964,683 RGD:2290270
G Ighv3-3 immunoglobulin heavy variable V3-3 JBrowse link 12 114,196,439 114,196,875 RGD:2290270
G Ighv3-4 immunoglobulin heavy variable V3-4 JBrowse link 12 114,253,617 114,253,915 RGD:2290270
G Ighv3-5 immunoglobulin heavy variable 3-5 JBrowse link 12 114,262,652 114,262,950 RGD:2290270
G Ighv3-6 immunoglobulin heavy variable 3-6 JBrowse link 12 114,288,152 114,288,447 RGD:2290270
G Ighv3-8 immunoglobulin heavy variable V3-8 JBrowse link 12 114,322,376 114,322,666 RGD:2290270
G Ighv4-1 immunoglobulin heavy variable 4-1 JBrowse link 12 113,948,284 113,948,577 RGD:2290270
G Ighv5-12 immunoglobulin heavy variable 5-12 JBrowse link 12 113,702,126 113,702,419 RGD:2290270
G Ighv5-12-4 immunoglobulin heavy variable 5-12-4 JBrowse link 12 113,762,251 113,762,544 RGD:2290270
G Ighv5-15 immunoglobulin heavy variable 5-15 JBrowse link 12 113,826,648 113,826,941 RGD:2290270
G Ighv5-16 immunoglobulin heavy variable 5-16 JBrowse link 12 113,838,528 113,838,821 RGD:2290270
G Ighv5-17 immunoglobulin heavy variable 5-17 JBrowse link 12 113,859,149 113,859,442 RGD:2290270
G Ighv5-2 immunoglobulin heavy variable 5-2 JBrowse link 12 113,578,504 113,578,990 RGD:2290270
G Ighv5-4 immunoglobulin heavy variable 5-4 JBrowse link 12 113,597,448 113,597,741 RGD:2290270
G Ighv5-6 immunoglobulin heavy variable 5-6 JBrowse link 12 113,625,508 113,625,801 RGD:2290270
G Ighv5-9 immunoglobulin heavy variable 5-9 JBrowse link 12 113,661,771 113,662,228 RGD:2290270
G Ighv5-9-1 immunoglobulin heavy variable 5-9-1 JBrowse link 12 113,736,113 113,736,406 RGD:2290270
G Ighv6-3 immunoglobulin heavy variable 6-3 JBrowse link 12 114,391,712 114,392,010 RGD:2290270
G Ighv6-4 immunoglobulin heavy variable V6-4 JBrowse link 12 114,406,474 114,406,773 RGD:2290270
G Ighv6-5 immunoglobulin heavy variable V6-5 JBrowse link 12 114,416,596 114,416,895 RGD:2290270
G Ighv6-6 immunoglobulin heavy variable 6-6 JBrowse link 12 114,434,788 114,435,087 RGD:2290270
G Ighv6-7 immunoglobulin heavy variable V6-7 JBrowse link 12 114,455,626 114,455,925 RGD:2290270
G Ighv7-2 immunoglobulin heavy variable 7-2 JBrowse link 12 113,912,025 113,912,483 RGD:2290270
G Ighv7-4 immunoglobulin heavy variable 7-4 JBrowse link 12 114,222,788 114,223,254 RGD:2290270
G Ighv8-11 immunoglobulin heavy variable V8-11 JBrowse link 12 115,567,149 115,567,449 RGD:2290270
G Ighv8-12 immunoglobulin heavy variable V8-12 JBrowse link 12 115,647,945 115,648,245 RGD:2290270
G Ighv8-13 immunoglobulin heavy variable 8-13 JBrowse link 12 115,765,335 115,765,635 RGD:2290270
G Ighv8-2 immunoglobulin heavy variable V8-2 JBrowse link 12 114,462,290 114,462,589 RGD:2290270
G Ighv8-4 immunoglobulin heavy variable V8-4 JBrowse link 12 115,024,026 115,024,318 RGD:2290270
G Ighv8-5 immunoglobulin heavy variable V8-5 JBrowse link 12 115,067,560 115,067,860 RGD:2290270
G Ighv8-6 immunoglobulin heavy variable V8-6 JBrowse link 12 115,165,777 115,166,077 RGD:2290270
G Ighv8-8 immunoglobulin heavy variable 8-8 JBrowse link 12 115,294,066 115,294,362 RGD:2290270
G Ighv8-9 immunoglobulin heavy variable V8-9 JBrowse link 12 115,468,331 115,468,632 RGD:2290270
G Ighv9-1 immunoglobulin heavy variable 9-1 JBrowse link 12 114,093,928 114,094,221 RGD:2290270
G Ighv9-2 immunoglobulin heavy variable V9-2 JBrowse link 12 114,109,001 114,109,430 RGD:2290270
G Ighv9-3 immunoglobulin heavy variable V9-3 JBrowse link 12 114,140,692 114,141,122 RGD:2290270
G Ighv9-4 immunoglobulin heavy variable 9-4 JBrowse link 12 114,299,961 114,300,254 RGD:2290270
G Igkc immunoglobulin kappa constant JBrowse link 6 70,726,435 70,726,754 RGD:2290270
G Iglc1 immunoglobulin lambda constant 1 JBrowse link 16 19,061,752 19,062,071 RGD:2290270
G Iglc2 immunoglobulin lambda constant 2 JBrowse link 16 19,198,536 19,198,852 RGD:2290270
G Iglc3 immunoglobulin lambda constant 3 JBrowse link 16 19,065,365 19,065,681 RGD:2290270
G Igll1 immunoglobulin lambda-like polypeptide 1 JBrowse link 16 16,860,671 16,863,985 RGD:2290270
G Klrh1 killer cell lectin-like receptor subfamily H, member 1 JBrowse link 6 129,766,568 129,784,270 RGD:2290270
G Mfge8 milk fat globule-EGF factor 8 protein JBrowse link 7 79,133,768 79,149,060 RGD:2290270
G Scarb1 scavenger receptor class B, member 1 JBrowse link 5 125,277,087 125,341,094 RGD:2290270
G Sirpa signal-regulatory protein alpha JBrowse link 2 129,591,042 129,632,228 RGD:2290270
G Trbc1 T cell receptor beta, constant region 1 JBrowse link 6 41,538,219 41,539,665 RGD:2290270
G Trbc2 T cell receptor beta, constant 2 JBrowse link 6 41,546,730 41,548,181 RGD:2290270
G Trdc T cell receptor delta, constant region JBrowse link 14 54,142,851 54,146,108 RGD:2290270
G Trdv4 T cell receptor delta variable 4 JBrowse link 14 54,075,004 54,075,515 RGD:2290270
G Tub tubby bipartite transcription factor JBrowse link 7 109,010,880 109,034,459 RGD:2290270
G Tulp1 tubby like protein 1 JBrowse link 17 28,351,515 28,365,216 RGD:2290270
recognition of apoptotic cell term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fcnb ficolin B JBrowse link 2 28,076,479 28,084,910 RGD:2290270
G Jmjd6 jumonji domain containing 6 JBrowse link 11 116,837,432 116,843,767 RGD:2290270
G Megf10 multiple EGF-like-domains 10 JBrowse link 18 57,133,090 57,297,467 RGD:2290270
G Pear1 platelet endothelial aggregation receptor 1 JBrowse link 3 87,749,097 87,769,110 RGD:2290270
G Scarb1 scavenger receptor class B, member 1 JBrowse link 5 125,277,087 125,341,094 RGD:2290270

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 23155
    cellular process 16951
      cell recognition 263
        phagocytosis, recognition 146
          recognition of apoptotic cell 5
Path 2
Term Annotations click to browse term
  biological_process 23155
    localization 6127
      establishment of localization 4672
        transport 4535
          vesicle-mediated transport 1545
            endocytosis 638
              phagocytosis, recognition 146
                recognition of apoptotic cell 5
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.