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ONTOLOGY REPORT - ANNOTATIONS


Term:autophagy
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Accession:GO:0006914 term browser browse the term
Definition:The cellular catabolic process in which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation.
Synonyms:alt_id: GO:0016238
 xref: Wikipedia:Autophagy_(cellular)


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autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07006458.1 RGD:13792537
G AABR07040864.1 RGD:1600115
G Ambra1 autophagy and beclin 1 regulator 1 JBrowse link 3 80,634,470 80,830,068 RGD:1624291
RGD:13792537
G Anxa7 annexin A7 JBrowse link 15 4,254,470 4,281,296 RGD:1624291
G Arfip2 ADP-ribosylation factor interacting protein 2 JBrowse link 1 170,464,995 170,471,138 RGD:1600115
G Arsa arylsulfatase A JBrowse link 7 130,446,644 130,452,632 RGD:1599235
G Arsb arylsulfatase B JBrowse link 2 23,385,154 23,543,028 RGD:1599235
G Atg10 autophagy related 10 JBrowse link 2 19,853,546 20,152,918 RGD:1624291
RGD:13792537
G Atg12 autophagy related 12 JBrowse link 18 40,721,799 40,732,143 RGD:2301217
G Atg14 autophagy related 14 JBrowse link 15 24,343,418 24,374,776 RGD:1624291
G Atg3 autophagy related 3 JBrowse link 11 60,585,192 60,613,706 RGD:1643237
G Atg4b autophagy related 4B, cysteine peptidase JBrowse link 9 100,888,457 100,920,123 RGD:1624291
G Atg4c autophagy related 4C, cysteine peptidase JBrowse link 5 117,861,517 117,932,116 RGD:1600115
G Atg4d autophagy related 4D, cysteine peptidase JBrowse link 8 22,291,445 22,301,331 RGD:1600115
G Atg5 autophagy related 5 JBrowse link 20 49,301,783 49,393,147 RGD:2301217
RGD:1600115
RGD:1624291
G Atg7 autophagy related 7 JBrowse link 4 146,570,113 146,777,093 RGD:1600115
RGD:1624291
G Atg9a autophagy related 9A JBrowse link 9 82,382,800 82,393,429 RGD:1624291
G Atp13a2 ATPase cation transporting 13A2 JBrowse link 5 159,512,208 159,531,631 RGD:1624291
G Becn1 beclin 1 JBrowse link 10 89,209,944 89,225,297 RGD:1643194
RGD:1624291
RGD:1600115
RGD:11558011
G Becn2 beclin 2 JBrowse link 13 93,971,720 93,974,467 RGD:1624291
G Chmp4b charged multivesicular body protein 4B JBrowse link 3 150,188,275 150,227,453 RGD:1624291
G Cltc clathrin heavy chain JBrowse link 10 74,014,560 74,070,578 RGD:1600115
G Ctsb cathepsin B JBrowse link 15 46,316,741 46,337,613 RGD:2315511
G Dap death-associated protein JBrowse link 2 84,275,884 84,328,998 RGD:1600115
G Dram2 DNA-damage regulated autophagy modulator 2 JBrowse link 2 209,160,901 209,189,641 RGD:1600115
G Drd2 dopamine receptor D2 JBrowse link 8 53,678,777 53,743,643 RGD:13506953
G Drd3 dopamine receptor D3 JBrowse link 11 61,819,102 61,883,223 RGD:13506953
G Ei24 EI24, autophagy associated transmembrane protein JBrowse link 8 39,254,883 39,271,238 RGD:1624291
G Epg5 ectopic P-granules autophagy protein 5 homolog JBrowse link 18 74,299,965 74,397,115 RGD:1624291
RGD:13792537
G Epm2a EPM2A glucan phosphatase, laforin JBrowse link 1 5,448,958 5,571,512 RGD:1624291
G Fnbp1l formin binding protein 1-like JBrowse link 2 226,691,435 226,742,081 RGD:1600115
G Foxo1 forkhead box O1 JBrowse link 2 141,451,234 141,527,016 RGD:1600115
G Gba glucosylceramidase beta JBrowse link 2 188,511,781 188,522,602 RGD:1624291
G Gramd1a GRAM domain containing 1A JBrowse link 1 89,563,982 89,590,406 RGD:1600115
G Hap1 huntingtin-associated protein 1 JBrowse link 10 88,257,975 88,266,210 RGD:1600115
G Hmgb1 high mobility group box 1 JBrowse link 12 7,082,529 7,090,246 RGD:1600115
G Itgb4 integrin subunit beta 4 JBrowse link 10 104,524,000 104,560,180 RGD:1600115
RGD:1624291
G Lamp2 lysosomal-associated membrane protein 2 JBrowse link X 124,722,628 124,766,079 RGD:1624291
G Lix1 limb and CNS expressed 1 JBrowse link 1 59,156,021 59,212,878 RGD:13792537
G Lix1l limb and CNS expressed 1 like JBrowse link 2 198,726,110 198,751,987 RGD:13792537
G LOC690000 similar to CG3740-PA JBrowse link 1 94,572,714 94,587,842 RGD:1624291
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha JBrowse link 3 150,801,289 150,802,935 RGD:1643189
G Map1lc3b microtubule-associated protein 1 light chain 3 beta JBrowse link 19 53,635,449 53,643,970 RGD:1624291
RGD:1600115
G Map1lc3b2 microtubule-associated protein 1 light chain 3 beta 2 JBrowse link 16 75,864,144 75,874,567 RGD:1600115
G Nhlrc1 NHL repeat containing E3 ubiquitin protein ligase 1 JBrowse link 17 18,059,382 18,060,572 RGD:1624291
G Npc1 NPC intracellular cholesterol transporter 1 JBrowse link 18 3,616,878 3,662,656 RGD:1624291
G Nrbf2 nuclear receptor binding factor 2 JBrowse link 20 22,728,145 22,746,477 RGD:1600115
RGD:13792537
RGD:1624291
G Optn optineurin JBrowse link 17 77,167,700 77,218,374 RGD:1600115
G Park7 Parkinsonism associated deglycase JBrowse link 5 167,982,438 168,004,724 RGD:1600115
G Phf23 PHD finger protein 23 JBrowse link 10 56,605,078 56,609,236 RGD:1600115
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 JBrowse link 18 22,964,121 23,047,896 RGD:1624291
G Pik3cb phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit beta JBrowse link 8 107,275,849 107,381,088 RGD:1600115
G Plekhm1 pleckstrin homology and RUN domain containing M1 JBrowse link 10 91,451,890 91,500,675 RGD:1600115
G Pmp22 peripheral myelin protein 22 JBrowse link 10 49,538,588 49,568,583 RGD:1624291
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 JBrowse link 2 54,857,688 54,893,404 RGD:1600115
G Prkaa2 protein kinase AMP-activated catalytic subunit alpha 2 JBrowse link 5 124,568,845 124,642,569 RGD:1600115
G Psen1 presenilin 1 JBrowse link 6 107,169,514 107,221,000 RGD:1624291
G Rab12 RAB12, member RAS oncogene family JBrowse link 9 114,683,985 114,709,613 RGD:1600115
G Rab1a RAB1A, member RAS oncogene family JBrowse link 14 104,475,082 104,500,176 RGD:1624291
RGD:1600115
G Rab8a RAB8A, member RAS oncogene family JBrowse link 16 19,355,047 19,376,776 RGD:1600115
G Rb1cc1 RB1-inducible coiled-coil 1 JBrowse link 5 13,033,918 13,097,369 RGD:1624291
G RGD1359108 similar to RIKEN cDNA 3110043O21 JBrowse link 5 50,666,444 50,691,523 RGD:1600115
RGD:13792537
RGD:1624291
G Rnf166 ring finger protein 166 JBrowse link 19 55,290,563 55,300,403 RGD:1600115
G Rnf185 ring finger protein 185 JBrowse link 14 83,648,400 83,685,273 RGD:1600115
G S100a8 S100 calcium binding protein A8 JBrowse link 2 190,073,239 190,074,333 RGD:1624291
RGD:1600115
G S100a9 S100 calcium binding protein A9 JBrowse link 2 190,097,436 190,100,209 RGD:1600115
RGD:1624291
G Sirt2 sirtuin 2 JBrowse link 1 86,948,866 86,971,954 RGD:1600115
G Sqstm1 sequestosome 1 JBrowse link 10 35,704,728 35,716,316 RGD:1600115
RGD:1624291
G Srpx sushi-repeat-containing protein, X-linked JBrowse link X 14,146,618 14,220,756 RGD:1624291
G Stk11 serine/threonine kinase 11 JBrowse link 7 12,440,751 12,457,513 RGD:1600115
G Syt11 synaptotagmin 11 JBrowse link 2 188,112,301 188,138,180 RGD:1624291
RGD:1600115
G Tbc1d5 TBC1 domain family, member 5 JBrowse link 9 1,144,641 1,747,732 RGD:1624291
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 JBrowse link 1 219,126,687 219,139,466 RGD:1624291
G Tecpr1 tectonin beta-propeller repeat containing 1 JBrowse link 12 12,374,132 12,403,382 RGD:1624291
RGD:1600115
G Tm9sf1 transmembrane 9 superfamily member 1 JBrowse link 15 34,314,645 34,322,172 RGD:1600115
G Tmbim6 transmembrane BAX inhibitor motif containing 6 JBrowse link 7 141,039,433 141,070,269 RGD:1600115
G Tollip toll interacting protein JBrowse link 1 214,823,993 214,844,861 RGD:1600115
G Tp53 tumor protein p53 JBrowse link 10 56,186,299 56,198,449 RGD:1624291
G Trappc4 trafficking protein particle complex 4 JBrowse link 8 48,723,755 48,727,182 RGD:1600115
RGD:1624291
G Trim17 tripartite motif-containing 17 JBrowse link 10 45,307,007 45,314,823 RGD:1600115
RGD:1624291
G Trim30c tripartite motif-containing 30C JBrowse link 1 169,492,786 169,514,195 RGD:1600115
G Trim5 tripartite motif-containing 5 JBrowse link 1 169,446,774 169,463,760 RGD:1624291
G Ulk1 unc-51 like autophagy activating kinase 1 JBrowse link 12 51,908,105 51,934,704 RGD:1624291
G Ulk2 unc-51 like autophagy activating kinase 2 JBrowse link 10 48,050,079 48,129,377 RGD:1624291
G Ulk3 unc-51 like kinase 3 JBrowse link 8 62,368,548 62,375,229 RGD:1600115
G Umod uromodulin JBrowse link 1 189,186,027 189,199,939 RGD:1624291
G Usp10 ubiquitin specific peptidase 10 JBrowse link 19 52,566,274 52,608,820 RGD:1600115
G Uvrag UV radiation resistance associated JBrowse link 1 163,844,804 164,101,568 RGD:1624291
G Vcp valosin-containing protein JBrowse link 5 58,426,548 58,445,953 RGD:1600115
RGD:1624291
G Vmp1 vacuole membrane protein 1 JBrowse link 10 73,901,988 74,001,900 RGD:8554414
RGD:13792537
RGD:1624291
G Vps11 VPS11 core subunit of CORVET and HOPS complexes JBrowse link 8 48,677,492 48,692,295 RGD:1600115
G Vps13a vacuolar protein sorting 13 homolog A JBrowse link 1 235,352,513 235,813,597 RGD:1624291
G Vps39 VPS39 subunit of HOPS complex JBrowse link 3 112,087,213 112,125,307 RGD:1624291
G Vps51 VPS51 subunit of GARP complex RGD:1624291
RGD:1600115
G Vti1a vesicle transport through interaction with t-SNAREs 1A JBrowse link 1 276,310,072 276,508,635 RGD:1624291
RGD:1600115
G Wdr45 WD repeat domain 45 JBrowse link X 15,621,249 15,627,159 RGD:1624291
RGD:1600115
G Wipi1 WD repeat domain, phosphoinositide interacting 1 JBrowse link 10 97,859,730 97,896,949 RGD:1624291
aggrephagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acbd5 acyl-CoA binding domain containing 5 JBrowse link 17 89,882,465 89,923,982 RGD:1624291
G Atg5 autophagy related 5 JBrowse link 20 49,301,783 49,393,147 RGD:1624291
RGD:1600115
G Sqstm1 sequestosome 1 JBrowse link 10 35,704,728 35,716,316 RGD:1624291
RGD:13792537
RGD:1600115
G Ubqln1 ubiquilin 1 JBrowse link 17 6,840,441 6,878,842 RGD:1600115
RGD:1624291
G Wdfy3 WD repeat and FYVE domain containing 3 JBrowse link 14 9,169,409 9,384,835 RGD:1624291
G Wdr81 WD repeat domain 81 JBrowse link 10 62,273,817 62,287,213 RGD:1624291
RGD:1600115
autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07048308.1 RGD:13792537
G AABR07072668.1 RGD:13792537
G Ambra1 autophagy and beclin 1 regulator 1 JBrowse link 3 80,634,470 80,830,068 RGD:1624291
G Atg101 autophagy related 101 JBrowse link 7 142,929,381 142,938,559 RGD:1624291
RGD:13792537
G Atg12 autophagy related 12 JBrowse link 18 40,721,799 40,732,143 RGD:1624291
RGD:13792537
G Atg13 autophagy related 13 JBrowse link 3 80,580,549 80,614,554 RGD:1624291
RGD:13792537
G Atg14 autophagy related 14 JBrowse link 15 24,343,418 24,374,776 RGD:1624291
RGD:13792537
G Atg16l1 autophagy related 16-like 1 JBrowse link 9 94,879,876 94,915,231 RGD:13792537
G Atg16l2 autophagy related 16-like 2 JBrowse link 1 166,401,271 166,415,078 RGD:13792537
G Atg2a autophagy related 2A JBrowse link 1 221,612,584 221,632,291 RGD:1624291
RGD:13792537
G Atg2b autophagy related 2B JBrowse link 6 129,449,451 129,519,599 RGD:13792537
G Atg3 autophagy related 3 JBrowse link 11 60,585,192 60,613,706 RGD:1600115
RGD:13792537
RGD:1624291
G Atg4b autophagy related 4B, cysteine peptidase JBrowse link 9 100,888,457 100,920,123 RGD:1624291
G Atg5 autophagy related 5 JBrowse link 20 49,301,783 49,393,147 RGD:1643189
RGD:13792537
RGD:1624291
G Atg7 autophagy related 7 JBrowse link 4 146,570,113 146,777,093 RGD:1624291
RGD:13792537
G Atg9a autophagy related 9A JBrowse link 9 82,382,800 82,393,429 RGD:1624291
RGD:13792537
G Atg9b autophagy related 9B JBrowse link 4 7,314,369 7,322,095 RGD:1624291
RGD:13792537
G Bag3 BAG cochaperone 3 JBrowse link 1 199,941,258 199,965,191 RGD:12793031
G Becn1 beclin 1 JBrowse link 10 89,209,944 89,225,297 RGD:1643189
RGD:13792537
RGD:1600115
RGD:1624291
G Becn2 beclin 2 JBrowse link 13 93,971,720 93,974,467 RGD:13792537
G Ctsd cathepsin D JBrowse link 1 215,541,570 215,553,446 RGD:1624291
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 JBrowse link 2 211,243,398 211,323,283 RGD:1624291
RGD:1600115
G Emc6 ER membrane protein complex subunit 6 JBrowse link 10 59,741,772 59,743,338 RGD:1624291
RGD:13792537
G Epm2a EPM2A glucan phosphatase, laforin JBrowse link 1 5,448,958 5,571,512 RGD:1624291
G Gabarap GABA type A receptor-associated protein JBrowse link 10 56,601,288 56,604,223 RGD:13792537
G Gabarapl1 GABA type A receptor associated protein like 1 JBrowse link 4 163,293,724 163,302,866 RGD:13792537
G Gabarapl2 GABA type A receptor associated protein like 2 JBrowse link 19 44,164,935 44,175,771 RGD:13792537
G Irgm immunity-related GTPase M JBrowse link 10 34,213,885 34,221,968 RGD:1624291
G LOC100359937 GABA(A) receptor-associated protein-like 2-like JBrowse link 8 95,943,674 95,944,604 RGD:13792537
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha JBrowse link 3 150,801,289 150,802,935 RGD:8554284
RGD:13792537
RGD:1624291
G Map1lc3b microtubule-associated protein 1 light chain 3 beta JBrowse link 19 53,635,449 53,643,970 RGD:13792537
G Nsfl1c NSFL1 cofactor JBrowse link 3 146,980,923 147,005,478 RGD:13792537
G Pacs2 phosphofurin acidic cluster sorting protein 2 JBrowse link 6 137,824,136 137,889,144 RGD:1624291
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 JBrowse link 18 22,964,121 23,047,896 RGD:2303129
RGD:13792537
RGD:1624291
G Psen1 presenilin 1 JBrowse link 6 107,169,514 107,221,000 RGD:1624291
G Rab1a RAB1A, member RAS oncogene family JBrowse link 14 104,475,082 104,500,176 RGD:1624291
RGD:13792537
RGD:1600115
G Rab1b RAB1B, member RAS oncogene family JBrowse link 1 220,483,529 220,491,469 RGD:13792537
G Rab23 RAB23, member RAS oncogene family JBrowse link 9 38,469,784 38,496,185 RGD:1624291
RGD:13792537
G Rab33b RAB33B, member RAS oncogene family JBrowse link 2 140,541,619 140,552,220 RGD:1624291
G Rab7a RAB7A, member RAS oncogene family JBrowse link 4 119,910,461 119,963,065 RGD:1624291
G Rb1cc1 RB1-inducible coiled-coil 1 JBrowse link 5 13,033,918 13,097,369 RGD:1624291
RGD:13792537
G Rufy4 RUN and FYVE domain containing 4 JBrowse link 9 81,401,080 81,422,016 RGD:1624291
RGD:13792537
G Sting1 stimulator of interferon response cGAMP interactor 1 JBrowse link 18 28,529,537 28,535,828 RGD:1600115
RGD:13792537
RGD:1624291
G Stx12 syntaxin 12 JBrowse link 5 151,044,050 151,072,893 RGD:1624291
RGD:1600115
G Synpo2 synaptopodin 2 JBrowse link 2 227,255,243 227,411,924 RGD:12793031
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 JBrowse link 1 219,126,687 219,139,466 RGD:1624291
G Tmem41b transmembrane protein 41B JBrowse link 1 174,605,833 174,620,192 RGD:1624291
RGD:1600115
G Tp53inp1 tumor protein p53 inducible nuclear protein 1 JBrowse link 5 24,402,895 24,419,651 RGD:13792537
G Tp53inp2 tumor protein p53 inducible nuclear protein 2 JBrowse link 3 150,910,398 150,918,525 RGD:1624291
RGD:13792537
RGD:1600115
G Trappc8 trafficking protein particle complex 8 JBrowse link 18 15,298,673 15,375,034 RGD:13792537
G Ubqln1 ubiquilin 1 JBrowse link 17 6,840,441 6,878,842 RGD:1624291
RGD:13792537
RGD:1600115
G Ubqln2 ubiquilin 2 JBrowse link X 18,723,313 18,726,732 RGD:13792537
G Ubxn2a UBX domain protein 2A JBrowse link 6 28,969,471 28,997,987 RGD:13792537
G Ubxn2b UBX domain protein 2B JBrowse link 5 19,285,368 19,314,199 RGD:13792537
G Ulk1 unc-51 like autophagy activating kinase 1 JBrowse link 12 51,908,105 51,934,704 RGD:1624291
RGD:13792537
G Ulk2 unc-51 like autophagy activating kinase 2 JBrowse link 10 48,050,079 48,129,377 RGD:13792537
G Vmp1 vacuole membrane protein 1 JBrowse link 10 73,901,988 74,001,900 RGD:1600115
RGD:1624291
G Wdr45 WD repeat domain 45 JBrowse link X 15,621,249 15,627,159 RGD:1600115
RGD:13792537
RGD:1624291
G Wdr45b WD repeat domain 45B JBrowse link 10 110,523,843 110,555,769 RGD:1624291
RGD:13792537
G Wipi1 WD repeat domain, phosphoinositide interacting 1 JBrowse link 10 97,859,730 97,896,949 RGD:1624291
RGD:13792537
G Wipi2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 12 13,969,704 13,998,134 RGD:1600115
RGD:13792537
RGD:1624291
autophagosome maturation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07048308.1 RGD:13792537
G AABR07072668.1 RGD:13792537
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin JBrowse link 1 197,986,384 197,999,726 RGD:1624291
G Epg5 ectopic P-granules autophagy protein 5 homolog JBrowse link 18 74,299,965 74,397,115 RGD:1624291
RGD:13792537
G Gabarap GABA type A receptor-associated protein JBrowse link 10 56,601,288 56,604,223 RGD:13792537
G Gabarapl1 GABA type A receptor associated protein like 1 JBrowse link 4 163,293,724 163,302,866 RGD:13792537
G Gabarapl2 GABA type A receptor associated protein like 2 JBrowse link 19 44,164,935 44,175,771 RGD:13792537
G Lamp2 lysosomal-associated membrane protein 2 JBrowse link X 124,722,628 124,766,079 RGD:1624291
RGD:13792537
RGD:1600115
G Lix1 limb and CNS expressed 1 JBrowse link 1 59,156,021 59,212,878 RGD:13792537
G Lix1l limb and CNS expressed 1 like JBrowse link 2 198,726,110 198,751,987 RGD:13792537
G LOC100359937 GABA(A) receptor-associated protein-like 2-like JBrowse link 8 95,943,674 95,944,604 RGD:13792537
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha JBrowse link 3 150,801,289 150,802,935 RGD:1624291
RGD:13792537
G Map1lc3b microtubule-associated protein 1 light chain 3 beta JBrowse link 19 53,635,449 53,643,970 RGD:1624291
RGD:13792537
G Mcoln1 mucolipin 1 JBrowse link 12 2,054,629 2,068,682 RGD:1624291
G Mfsd8 major facilitator superfamily domain containing 8 JBrowse link 2 127,706,618 127,784,129 RGD:1624291
G Rubcnl rubicon like autophagy enhancer JBrowse link 15 57,065,512 57,109,197 RGD:1624291
RGD:13792537
G Snap29 synaptosome associated protein 29 JBrowse link 11 87,827,633 87,858,107 RGD:1624291
RGD:1600115
G Snapin SNAP-associated protein JBrowse link 2 189,878,159 189,880,743 RGD:1624291
G Snx14 sorting nexin 14 JBrowse link 8 96,018,943 96,088,405 RGD:1624291
G Stx17 syntaxin 17 JBrowse link 5 63,866,346 63,926,276 RGD:1600115
RGD:1624291
G Tecpr1 tectonin beta-propeller repeat containing 1 JBrowse link 12 12,374,132 12,403,382 RGD:1624291
RGD:1600115
G Ubqln1 ubiquilin 1 JBrowse link 17 6,840,441 6,878,842 RGD:1624291
RGD:1600115
G Uvrag UV radiation resistance associated JBrowse link 1 163,844,804 164,101,568 RGD:1624291
G Vamp7 vesicle-associated membrane protein 7 JBrowse link 12 18,996,566 19,033,714 RGD:1624291
G Vamp8 vesicle-associated membrane protein 8 JBrowse link 4 100,250,301 100,252,756 RGD:1624291
RGD:1600115
G Vcp valosin-containing protein JBrowse link 5 58,426,548 58,445,953 RGD:1624291
RGD:13792537
RGD:1600115
G Vipas39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog JBrowse link 6 111,271,283 111,296,013 RGD:1624291
G Vps16 VPS16 core subunit of CORVET and HOPS complexes JBrowse link 3 122,947,887 122,969,543 RGD:1624291
G Vps33a VPS33A core subunit of CORVET and HOPS complexes JBrowse link 12 38,459,816 38,482,903 RGD:1624291
G Vps33b VPS33B, late endosome and lysosome associated JBrowse link 1 142,060,955 142,083,955 RGD:1624291
G Vti1b vesicle transport through interaction with t-SNAREs 1B JBrowse link 6 102,340,261 102,353,612 RGD:1624291
G Wipi2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 12 13,969,704 13,998,134 RGD:1624291
autophagosome membrane docking term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atg14 autophagy related 14 JBrowse link 15 24,343,418 24,374,776 RGD:1624291
G Snap29 synaptosome associated protein 29 JBrowse link 11 87,827,633 87,858,107 RGD:1600115
RGD:1624291
G Stx17 syntaxin 17 JBrowse link 5 63,866,346 63,926,276 RGD:1624291
G Vamp8 vesicle-associated membrane protein 8 JBrowse link 4 100,250,301 100,252,756 RGD:1600115
RGD:1624291
autophagosome organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atp13a2 ATPase cation transporting 13A2 JBrowse link 5 159,512,208 159,531,631 RGD:1624291
G Gba glucosylceramidase beta JBrowse link 2 188,511,781 188,522,602 RGD:1624291
G Pik3c2a phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha JBrowse link 1 185,210,922 185,326,314 RGD:1624291
G Pik3c2b phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta JBrowse link 13 49,848,939 49,909,404 RGD:1624291
autophagosome-endosome fusion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rubcnl rubicon like autophagy enhancer JBrowse link 15 57,065,512 57,109,197 RGD:1624291
RGD:13792537
autophagosome-lysosome fusion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atp13a2 ATPase cation transporting 13A2 JBrowse link 5 159,512,208 159,531,631 RGD:1624291
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin JBrowse link 1 197,986,384 197,999,726 RGD:1624291
G Rubcnl rubicon like autophagy enhancer JBrowse link 15 57,065,512 57,109,197 RGD:1624291
RGD:13792537
autophagy of mitochondrion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07048308.1 RGD:13792537
G AABR07072668.1 RGD:13792537
G AC135026.1 RGD:13792537
G Ambra1 autophagy and beclin 1 regulator 1 JBrowse link 3 80,634,470 80,830,068 RGD:1624291
G Atg12 autophagy related 12 JBrowse link 18 40,721,799 40,732,143 RGD:13792537
G Atg13 autophagy related 13 JBrowse link 3 80,580,549 80,614,554 RGD:13792537
G Atg2a autophagy related 2A JBrowse link 1 221,612,584 221,632,291 RGD:13792537
G Atg2b autophagy related 2B JBrowse link 6 129,449,451 129,519,599 RGD:13792537
G Atg3 autophagy related 3 JBrowse link 11 60,585,192 60,613,706 RGD:13792537
G Atg5 autophagy related 5 JBrowse link 20 49,301,783 49,393,147 RGD:1624291
RGD:13792537
RGD:1600115
G Atg7 autophagy related 7 JBrowse link 4 146,570,113 146,777,093 RGD:1624291
RGD:13792537
G Atg9a autophagy related 9A JBrowse link 9 82,382,800 82,393,429 RGD:13792537
G Atg9b autophagy related 9B JBrowse link 4 7,314,369 7,322,095 RGD:13792537
G Becn1 beclin 1 JBrowse link 10 89,209,944 89,225,297 RGD:1624291
G Capn10 calpain 10 JBrowse link 9 100,104,000 100,112,833 RGD:7247732
G Cdkn2a cyclin-dependent kinase inhibitor 2A JBrowse link 5 107,823,323 107,832,405 RGD:1624291
G Cisd2 CDGSH iron sulfur domain 2 JBrowse link 2 240,586,754 240,611,560 RGD:1624291
G Fbxo7 F-box protein 7 JBrowse link 7 23,815,246 23,843,505 RGD:1624291
RGD:1600115
G Fis1 fission, mitochondrial 1 JBrowse link 12 22,750,485 22,765,324 RGD:1624291
RGD:13792537
G Fundc1 FUN14 domain containing 1 JBrowse link X 5,549,468 5,566,125 RGD:1624291
RGD:13792537
RGD:1600115
G Fundc2 FUN14 domain containing 2 JBrowse link 18 401,878 407,954 RGD:13792537
G Gabarap GABA type A receptor-associated protein JBrowse link 10 56,601,288 56,604,223 RGD:13792537
G Gabarapl1 GABA type A receptor associated protein like 1 JBrowse link 4 163,293,724 163,302,866 RGD:13792537
G Gabarapl2 GABA type A receptor associated protein like 2 JBrowse link 19 44,164,935 44,175,771 RGD:13792537
G LOC100359937 GABA(A) receptor-associated protein-like 2-like JBrowse link 8 95,943,674 95,944,604 RGD:13792537
G LOC365778 similar to RIKEN cDNA 1700034I23 JBrowse link 2 127,776,103 127,778,350 RGD:13792537
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha JBrowse link 3 150,801,289 150,802,935 RGD:1624291
RGD:13792537
G Map1lc3b microtubule-associated protein 1 light chain 3 beta JBrowse link 19 53,635,449 53,643,970 RGD:1624291
RGD:13792537
G Pink1 PTEN induced kinase 1 JBrowse link 5 156,677,146 156,689,258 RGD:1624291
RGD:13792537
G Ppargc1a PPARG coactivator 1 alpha JBrowse link 14 63,095,291 63,190,688 RGD:10059673
G Prkn parkin RBR E3 ubiquitin protein ligase JBrowse link 1 48,880,015 50,069,998 RGD:10047224
RGD:13792537
RGD:1624291
RGD:1600115
G Rb1cc1 RB1-inducible coiled-coil 1 JBrowse link 5 13,033,918 13,097,369 RGD:13792537
G Slc25a46 solute carrier family 25, member 46 JBrowse link 18 24,369,104 24,397,412 RGD:1624291
G Usp30 ubiquitin specific peptidase 30 JBrowse link 12 48,262,663 48,316,580 RGD:1624291
G Wdr45 WD repeat domain 45 JBrowse link X 15,621,249 15,627,159 RGD:13792537
G Wdr45b WD repeat domain 45B JBrowse link 10 110,523,843 110,555,769 RGD:13792537
G Wipi1 WD repeat domain, phosphoinositide interacting 1 JBrowse link 10 97,859,730 97,896,949 RGD:13792537
G Wipi2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 12 13,969,704 13,998,134 RGD:13792537
autophagy of nucleus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atg12 autophagy related 12 JBrowse link 18 40,721,799 40,732,143 RGD:13792537
G Atg13 autophagy related 13 JBrowse link 3 80,580,549 80,614,554 RGD:13792537
G Atg2a autophagy related 2A JBrowse link 1 221,612,584 221,632,291 RGD:13792537
G Atg2b autophagy related 2B JBrowse link 6 129,449,451 129,519,599 RGD:13792537
G Atg3 autophagy related 3 JBrowse link 11 60,585,192 60,613,706 RGD:13792537
G Atg5 autophagy related 5 JBrowse link 20 49,301,783 49,393,147 RGD:13792537
G Wdr45 WD repeat domain 45 JBrowse link X 15,621,249 15,627,159 RGD:13792537
G Wdr45b WD repeat domain 45B JBrowse link 10 110,523,843 110,555,769 RGD:13792537
G Wipi1 WD repeat domain, phosphoinositide interacting 1 JBrowse link 10 97,859,730 97,896,949 RGD:13792537
G Wipi2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 12 13,969,704 13,998,134 RGD:13792537
autophagy of peroxisome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07028887.1 RGD:1600115
G Acbd5 acyl-CoA binding domain containing 5 JBrowse link 17 89,882,465 89,923,982 RGD:1600115
RGD:1624291
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 JBrowse link 18 22,964,121 23,047,896 RGD:13792537
G Pik3r4 phosphoinositide-3-kinase, regulatory subunit 4 JBrowse link 8 114,300,248 114,350,686 RGD:13792537
G Rb1cc1 RB1-inducible coiled-coil 1 JBrowse link 5 13,033,918 13,097,369 RGD:13792537
G Trappc8 trafficking protein particle complex 8 JBrowse link 18 15,298,673 15,375,034 RGD:13792537
chaperone-mediated autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atg5 autophagy related 5 JBrowse link 20 49,301,783 49,393,147 RGD:12793031
G Atg7 autophagy related 7 JBrowse link 4 146,570,113 146,777,093 RGD:12793031
G Bag3 BAG cochaperone 3 JBrowse link 1 199,941,258 199,965,191 RGD:12793031
G Hsp90aa1 heat shock protein 90 alpha family class A member 1 JBrowse link 6 135,107,262 135,112,793 RGD:10412301
G Hsp90ab1 heat shock protein 90 alpha family class B member 1 JBrowse link 9 17,817,791 17,823,163 RGD:10412301
G Hspa8 heat shock protein family A (Hsp70) member 8 JBrowse link 8 44,989,401 44,993,261 RGD:10412301
G Lamp2 lysosomal-associated membrane protein 2 JBrowse link X 124,722,628 124,766,079 RGD:1581607
RGD:1624291
G LOC103692716 heat shock protein HSP 90-alpha JBrowse link 6 135,044,833 135,050,417 RGD:10412301
G Stub1 STIP1 homology and U-box containing protein 1 JBrowse link 10 15,197,754 15,200,035 RGD:12793031
G Synpo2 synaptopodin 2 JBrowse link 2 227,255,243 227,411,924 RGD:12793031
chaperone-mediated protein transport involved in chaperone-mediated autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07011951.1 RGD:13792537
G AABR07033324.1 RGD:13792537
G Hsc70-ps1 heat shock cognate protein 70, pseudogene 1 JBrowse link 2 177,651,231 177,653,349 RGD:13792537
G Hsp90aa1 heat shock protein 90 alpha family class A member 1 JBrowse link 6 135,107,262 135,112,793 RGD:10412301
G Hsp90ab1 heat shock protein 90 alpha family class B member 1 JBrowse link 9 17,817,791 17,823,163 RGD:10412301
G Hspa8 heat shock protein family A (Hsp70) member 8 JBrowse link 8 44,989,401 44,993,261 RGD:10412301
RGD:13792537
G LOC103692716 heat shock protein HSP 90-alpha JBrowse link 6 135,044,833 135,050,417 RGD:10412301
G LOC680121 similar to heat shock protein 8 JBrowse link 11 13,499,168 13,501,271 RGD:13792537
engulfment of target by autophagosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 JBrowse link 12 11,433,815 11,526,465 RGD:1624291
glycophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rb1cc1 RB1-inducible coiled-coil 1 JBrowse link 5 13,033,918 13,097,369 RGD:13792537
G Stbd1 starch binding domain 1 JBrowse link 14 16,976,355 16,979,760 RGD:1624291
RGD:1600115
induction by virus of host autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Eif2ak4 eukaryotic translation initiation factor 2 alpha kinase 4 JBrowse link 3 110,159,624 110,245,382 RGD:1624291
late endosomal microautophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07011951.1 RGD:13792537
G AABR07033324.1 RGD:13792537
G Hsc70-ps1 heat shock cognate protein 70, pseudogene 1 JBrowse link 2 177,651,231 177,653,349 RGD:13792537
G Hspa8 heat shock protein family A (Hsp70) member 8 JBrowse link 8 44,989,401 44,993,261 RGD:1624291
RGD:13792537
G LOC680121 similar to heat shock protein 8 JBrowse link 11 13,499,168 13,501,271 RGD:13792537
G Vps4a vacuolar protein sorting 4 homolog A JBrowse link 19 39,230,050 39,243,298 RGD:1624291
RGD:1600115
G Vps4b vacuolar protein sorting 4 homolog B JBrowse link 13 26,825,261 26,850,460 RGD:1624291
late nucleophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atg7 autophagy related 7 JBrowse link 4 146,570,113 146,777,093 RGD:13792537
G Atg9a autophagy related 9A JBrowse link 9 82,382,800 82,393,429 RGD:13792537
G Atg9b autophagy related 9B JBrowse link 4 7,314,369 7,322,095 RGD:13792537
lipophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rab7a RAB7A, member RAS oncogene family JBrowse link 4 119,910,461 119,963,065 RGD:1624291
RGD:1600115
macroautophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07048308.1 RGD:13792537
G AABR07072668.1 RGD:13792537
G Acbd5 acyl-CoA binding domain containing 5 JBrowse link 17 89,882,465 89,923,982 RGD:1624291
G Atg10 autophagy related 10 JBrowse link 2 19,853,546 20,152,918 RGD:13792537
G Atg13 autophagy related 13 JBrowse link 3 80,580,549 80,614,554 RGD:13792537
G Atg14 autophagy related 14 JBrowse link 15 24,343,418 24,374,776 RGD:1624291
G Atg3 autophagy related 3 JBrowse link 11 60,585,192 60,613,706 RGD:1624291
G Atg5 autophagy related 5 JBrowse link 20 49,301,783 49,393,147 RGD:1624291
G Atg7 autophagy related 7 JBrowse link 4 146,570,113 146,777,093 RGD:1624291
G Becn1 beclin 1 JBrowse link 10 89,209,944 89,225,297 RGD:1600115
RGD:1624291
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin JBrowse link 1 197,986,384 197,999,726 RGD:1624291
G Ei24 EI24, autophagy associated transmembrane protein JBrowse link 8 39,254,883 39,271,238 RGD:13792537
G Gabarap GABA type A receptor-associated protein JBrowse link 10 56,601,288 56,604,223 RGD:13792537
G Gabarapl1 GABA type A receptor associated protein like 1 JBrowse link 4 163,293,724 163,302,866 RGD:13792537
G Gabarapl2 GABA type A receptor associated protein like 2 JBrowse link 19 44,164,935 44,175,771 RGD:13792537
G Hdac10 histone deacetylase 10 JBrowse link 7 130,102,335 130,109,036 RGD:1600115
RGD:1624291
G LOC100359937 GABA(A) receptor-associated protein-like 2-like JBrowse link 8 95,943,674 95,944,604 RGD:13792537
G LOC294154 similar to chromosome 6 open reading frame 106 isoform a JBrowse link 20 7,331,321 7,397,588 RGD:13792537
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha JBrowse link 3 150,801,289 150,802,935 RGD:1624291
RGD:13792537
G Map1lc3b microtubule-associated protein 1 light chain 3 beta JBrowse link 19 53,635,449 53,643,970 RGD:1624291
RGD:13792537
G Nbr1 NBR1, autophagy cargo receptor JBrowse link 10 89,455,202 89,483,791 RGD:1600115
RGD:13792537
RGD:1624291
G Pik3c2a phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha JBrowse link 1 185,210,922 185,326,314 RGD:1624291
G Pik3c2b phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta JBrowse link 13 49,848,939 49,909,404 RGD:1624291
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 JBrowse link 18 22,964,121 23,047,896 RGD:1600115
RGD:1624291
G Pik3r4 phosphoinositide-3-kinase, regulatory subunit 4 JBrowse link 8 114,300,248 114,350,686 RGD:13792537
G Plaa phospholipase A2, activating protein JBrowse link 5 113,548,913 113,578,928 RGD:1624291
RGD:1600115
G Sqstm1 sequestosome 1 JBrowse link 10 35,704,728 35,716,316 RGD:1624291
RGD:1600115
G Tbc1d5 TBC1 domain family, member 5 JBrowse link 9 1,144,641 1,747,732 RGD:1624291
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 JBrowse link 1 219,126,687 219,139,466 RGD:1624291
G Tmem74 transmembrane protein 74 JBrowse link 7 82,684,666 82,689,753 RGD:1624291
G Tp53inp2 tumor protein p53 inducible nuclear protein 2 JBrowse link 3 150,910,398 150,918,525 RGD:1624291
G Ubqln1 ubiquilin 1 JBrowse link 17 6,840,441 6,878,842 RGD:1624291
G Ubxn6 UBX domain protein 6 JBrowse link 9 10,995,516 11,000,643 RGD:1624291
G Ulk1 unc-51 like autophagy activating kinase 1 JBrowse link 12 51,908,105 51,934,704 RGD:1624291
G Vcp valosin-containing protein JBrowse link 5 58,426,548 58,445,953 RGD:1624291
RGD:13792537
RGD:1600115
G Yod1 YOD1 deubiquitinase JBrowse link 13 47,441,296 47,443,013 RGD:1624291
RGD:1600115
G Zfyve1 zinc finger FYVE-type containing 1 JBrowse link 6 107,031,411 107,080,590 RGD:1624291
mitophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ambra1 autophagy and beclin 1 regulator 1 JBrowse link 3 80,634,470 80,830,068 RGD:1624291
G Atg13 autophagy related 13 JBrowse link 3 80,580,549 80,614,554 RGD:1624291
RGD:13792537
G Atg14 autophagy related 14 JBrowse link 15 24,343,418 24,374,776 RGD:1624291
RGD:13792537
G Becn1 beclin 1 JBrowse link 10 89,209,944 89,225,297 RGD:1624291
G Prkn parkin RBR E3 ubiquitin protein ligase JBrowse link 1 48,880,015 50,069,998 RGD:1624291
G Sqstm1 sequestosome 1 JBrowse link 10 35,704,728 35,716,316 RGD:1624291
RGD:13792537
G Ulk1 unc-51 like autophagy activating kinase 1 JBrowse link 12 51,908,105 51,934,704 RGD:1624291
mitophagy by induced vacuole formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Spata18 spermatogenesis associated 18 JBrowse link 14 37,081,529 37,108,245 RGD:1600115
RGD:13792537
RGD:1624291
negative regulation of autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Becn1 beclin 1 JBrowse link 10 89,209,944 89,225,297 RGD:1624291
G Chmp4b charged multivesicular body protein 4B JBrowse link 3 150,188,275 150,227,453 RGD:1624291
G Ehmt2 euchromatic histone lysine methyltransferase 2 JBrowse link 20 4,576,033 4,592,980 RGD:1624291
G Fez1 fasciculation and elongation protein zeta 1 JBrowse link 8 39,305,128 39,350,270 RGD:1624291
RGD:1600115
G Fez2 fasciculation and elongation protein zeta 2 JBrowse link 6 963,903 1,003,955 RGD:1624291
RGD:1600115
G Lrrk2 leucine-rich repeat kinase 2 JBrowse link 7 132,857,311 133,018,549 RGD:1624291
RGD:13792537
G Mtm1 myotubularin 1 JBrowse link 6 18,821,821 18,840,449 RGD:1624291
RGD:13792537
G Nupr1 nuclear protein 1, transcriptional regulator JBrowse link 1 194,767,484 194,769,519 RGD:1600115
RGD:1624291
G Phf23 PHD finger protein 23 JBrowse link 10 56,605,078 56,609,236 RGD:1624291
RGD:13792537
RGD:1600115
G Pink1 PTEN induced kinase 1 JBrowse link 5 156,677,146 156,689,258 RGD:1624291
G Scfd1 sec1 family domain containing 1 JBrowse link 6 72,124,408 72,202,703 RGD:1624291
G Sec22b SEC22 homolog B, vesicle trafficking protein JBrowse link 2 200,076,079 200,096,861 RGD:1624291
G Smcr8 SMCR8-C9orf72 complex subunit JBrowse link 10 47,019,326 47,026,465 RGD:1624291
G Tmem39a transmembrane protein 39a JBrowse link 11 64,723,181 64,752,514 RGD:1624291
RGD:1600115
negative regulation of autophagosome maturation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Clec16a C-type lectin domain containing 16A JBrowse link 10 5,002,196 5,196,914 RGD:1624291
G Phf23 PHD finger protein 23 JBrowse link 10 56,605,078 56,609,236 RGD:1624291
RGD:13792537
RGD:1600115
G Rubcn rubicon autophagy regulator JBrowse link 11 71,150,506 71,199,254 RGD:1624291
RGD:13792537
G Tmem39a transmembrane protein 39a JBrowse link 11 64,723,181 64,752,514 RGD:1600115
RGD:1624291
G Ubqln4 ubiquilin 4 JBrowse link 2 187,915,701 187,931,035 RGD:1624291
negative regulation of autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adra1a adrenoceptor alpha 1A JBrowse link 15 43,296,997 43,398,314 RGD:1624291
G Akt1 AKT serine/threonine kinase 1 JBrowse link 6 137,218,398 137,239,970 RGD:1624291
G Bcl2 BCL2, apoptosis regulator JBrowse link 13 26,605,426 26,769,374 RGD:1624291
RGD:1600115
G Becn1 beclin 1 JBrowse link 10 89,209,944 89,225,297 RGD:1624291
G Bmf Bcl2 modifying factor JBrowse link 3 110,303,515 110,324,125 RGD:1624291
RGD:13792537
G Cptp ceramide-1-phosphate transfer protein JBrowse link 5 173,314,219 173,318,384 RGD:1600115
RGD:1624291
G Dap death-associated protein JBrowse link 2 84,275,884 84,328,998 RGD:1624291
RGD:13792537
G Dapl1 death associated protein-like 1 JBrowse link 3 45,538,408 45,559,281 RGD:13792537
G Eif4e eukaryotic translation initiation factor 4E JBrowse link 2 243,819,616 243,853,987 RGD:1624291
G Eif4g1 eukaryotic translation initiation factor 4 gamma, 1 JBrowse link 11 83,907,659 83,927,683 RGD:1624291
G Eif4g2 eukaryotic translation initiation factor 4, gamma 2 JBrowse link 1 175,883,362 175,895,510 RGD:1624291
G Eif4g3 eukaryotic translation initiation factor 4 gamma, 3 JBrowse link 5 156,343,663 156,564,037 RGD:1624291
G Foxk1 forkhead box K1 JBrowse link 12 14,183,436 14,244,634 RGD:1624291
G Foxk2 forkhead box K2 JBrowse link 10 110,468,905 110,518,854 RGD:1624291
G Gata4 GATA binding protein 4 JBrowse link 15 46,386,703 46,458,679 RGD:5131537
G Golga2 golgin A2 JBrowse link 3 11,317,328 11,337,569 RGD:1624291
G Herc1 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 JBrowse link 8 72,029,550 72,198,363 RGD:1624291
G Htr2b 5-hydroxytryptamine receptor 2B JBrowse link 9 93,112,781 93,130,135 RGD:1600115
RGD:1624291
G Il10 interleukin 10 JBrowse link 13 47,738,933 47,743,392 RGD:1624291
G Il10ra interleukin 10 receptor subunit alpha JBrowse link 8 49,558,062 49,573,891 RGD:1624291
G Il3 interleukin 3 JBrowse link 10 39,620,535 39,622,973 RGD:1624291
G Kdm4a lysine demethylase 4A JBrowse link 5 136,967,650 137,014,402 RGD:1624291
G Klhl22 kelch-like family member 22 JBrowse link 11 87,646,489 87,718,808 RGD:1600115
RGD:1624291
G Lep leptin JBrowse link 4 56,337,695 56,351,818 RGD:1624291
RGD:1600115
G Lepr leptin receptor JBrowse link 5 120,503,475 120,682,281 RGD:1624291
RGD:1600115
G Mcl1 MCL1 apoptosis regulator, BCL2 family member JBrowse link 2 197,786,212 197,788,992 RGD:1624291
G Mir223 microRNA 223 JBrowse link X 65,367,812 65,367,921 RGD:21408565
G Mt3 metallothionein 3 JBrowse link 19 11,324,708 11,326,112 RGD:1624291
RGD:1600115
G Mtmr9 myotubularin related protein 9 JBrowse link 15 46,697,262 46,719,296 RGD:1624291
RGD:13792537
G Mtor mechanistic target of rapamycin kinase JBrowse link 5 165,263,813 165,373,967 RGD:10040964
RGD:1624291
RGD:13792537
RGD:1600115
G Nampt nicotinamide phosphoribosyltransferase JBrowse link 6 52,122,085 52,156,473 RGD:13781888
G Nupr1 nuclear protein 1, transcriptional regulator JBrowse link 1 194,767,484 194,769,519 RGD:1600115
RGD:1624291
RGD:14390062
G Ptk2 protein tyrosine kinase 2 JBrowse link 7 114,436,419 114,611,317 RGD:1624291
RGD:1600115
G Ptpn22 protein tyrosine phosphatase, non-receptor type 22 JBrowse link 2 206,342,066 206,390,348 RGD:1624291
G Rasip1 Ras interacting protein 1 JBrowse link 1 101,609,209 101,621,648 RGD:1624291
G Rnf5 ring finger protein 5 JBrowse link 20 4,366,244 4,368,690 RGD:1624291
G Rraga Ras-related GTP binding A JBrowse link 5 104,941,067 104,942,662 RGD:1624291
RGD:1600115
G Rubcn rubicon autophagy regulator JBrowse link 11 71,150,506 71,199,254 RGD:1624291
G Sirt2 sirtuin 2 JBrowse link 1 86,948,866 86,971,954 RGD:1600115
RGD:1624291
G Stat3 signal transducer and activator of transcription 3 JBrowse link 10 88,790,401 88,842,263 RGD:1624291
G Tbc1d14 TBC1 domain family, member 14 JBrowse link 14 79,172,272 79,438,765 RGD:1624291
RGD:1600115
G Trem2 triggering receptor expressed on myeloid cells 2 JBrowse link 9 14,611,541 14,618,076 RGD:1624291
G Washc1 WASH complex subunit 1 JBrowse link 9 113,918,914 113,936,861 RGD:1600115
RGD:1624291
G Wdr6 WD repeat domain 6 JBrowse link 8 117,358,345 117,364,761 RGD:1624291
G Zkscan3 zinc finger with KRAB and SCAN domains 3 JBrowse link 17 45,247,724 45,263,422 RGD:1624291
negative regulation of autophagy of mitochondrion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pink1 PTEN induced kinase 1 JBrowse link 5 156,677,146 156,689,258 RGD:1624291
G Tspo translocator protein JBrowse link 7 124,460,358 124,470,610 RGD:1624291
negative regulation of chaperone-mediated autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ctsa cathepsin A JBrowse link 3 161,298,750 161,304,627 RGD:1624291
RGD:10412300
RGD:1600115
G Snca synuclein alpha JBrowse link 4 90,782,412 90,883,236 RGD:1624291
negative regulation of macroautophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hmox1 heme oxygenase 1 JBrowse link 19 14,508,634 14,515,455 RGD:1624291
G Lrrk2 leucine-rich repeat kinase 2 JBrowse link 7 132,857,311 133,018,549 RGD:1624291
G Lzts1 leucine zipper tumor suppressor 1 JBrowse link 16 22,250,452 22,306,667 RGD:1624291
G Mtor mechanistic target of rapamycin kinase JBrowse link 5 165,263,813 165,373,967 RGD:1624291
RGD:13792537
G Npc1 NPC intracellular cholesterol transporter 1 JBrowse link 18 3,616,878 3,662,656 RGD:1624291
G Nrbp2 nuclear receptor binding protein 2 JBrowse link 7 117,145,106 117,151,694 RGD:1624291
G Pink1 PTEN induced kinase 1 JBrowse link 5 156,677,146 156,689,258 RGD:1624291
G Poldip2 DNA polymerase delta interacting protein 2 JBrowse link 10 65,781,994 65,790,833 RGD:1624291
G Qsox1 quiescin sulfhydryl oxidase 1 JBrowse link 13 73,423,396 73,460,890 RGD:1624291
G Smcr8 SMCR8-C9orf72 complex subunit JBrowse link 10 47,019,326 47,026,465 RGD:1624291
G Tsc1 TSC complex subunit 1 JBrowse link 3 7,219,955 7,269,063 RGD:10448950
G Tsc2 TSC complex subunit 2 JBrowse link 10 13,962,006 13,996,684 RGD:11568679
G Usp36 ubiquitin specific peptidase 36 JBrowse link 10 107,292,828 107,324,355 RGD:1624291
negative regulation of macroautophagy by TORC1 signaling term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Clec16a C-type lectin domain containing 16A JBrowse link 10 5,002,196 5,196,914 RGD:1624291
negative regulation of mitophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Clec16a C-type lectin domain containing 16A JBrowse link 10 5,002,196 5,196,914 RGD:1624291
G Rnf41 ring finger protein 41 JBrowse link 7 2,827,242 2,854,230 RGD:1624291
G Tigar TP53 induced glycolysis regulatory phosphatase JBrowse link 4 159,635,145 159,654,108 RGD:1624291
G Tp53 tumor protein p53 JBrowse link 10 56,186,299 56,198,449 RGD:1624291
G Usp30 ubiquitin specific peptidase 30 JBrowse link 12 48,262,663 48,316,580 RGD:13208875
negative regulation of mitophagy in response to mitochondrial depolarization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Htra2 HtrA serine peptidase 2 JBrowse link 4 113,883,671 113,886,833 RGD:1624291
negative regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Vps13c vacuolar protein sorting 13 homolog C JBrowse link 8 73,682,814 73,843,290 RGD:1624291
RGD:1600115
parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hdac6 histone deacetylase 6 JBrowse link X 15,295,372 15,316,673 RGD:1624291
G Mfn2 mitofusin 2 JBrowse link 5 164,684,244 164,715,414 RGD:1624291
G Optn optineurin JBrowse link 17 77,167,700 77,218,374 RGD:1600115
RGD:1624291
G Prkn parkin RBR E3 ubiquitin protein ligase JBrowse link 1 48,880,015 50,069,998 RGD:1624291
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 JBrowse link 12 11,433,815 11,526,465 RGD:1624291
piecemeal microautophagy of the nucleus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atg13 autophagy related 13 JBrowse link 3 80,580,549 80,614,554 RGD:13792537
G Atg7 autophagy related 7 JBrowse link 4 146,570,113 146,777,093 RGD:13792537
G Rb1cc1 RB1-inducible coiled-coil 1 JBrowse link 5 13,033,918 13,097,369 RGD:13792537
positive regulation by symbiont of host autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atg5 autophagy related 5 JBrowse link 20 49,301,783 49,393,147 RGD:1624291
RGD:1600115
G Atg7 autophagy related 7 JBrowse link 4 146,570,113 146,777,093 RGD:1624291
G Irgm immunity-related GTPase M JBrowse link 10 34,213,885 34,221,968 RGD:1624291
G Ulk1 unc-51 like autophagy activating kinase 1 JBrowse link 12 51,908,105 51,934,704 RGD:1624291
G Ulk2 unc-51 like autophagy activating kinase 2 JBrowse link 10 48,050,079 48,129,377 RGD:1624291
positive regulation of aggrephagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bag3 BAG cochaperone 3 JBrowse link 1 199,941,258 199,965,191 RGD:1624291
G Hspb8 heat shock protein family B (small) member 8 JBrowse link 12 45,905,371 45,920,014 RGD:1624291
G Htt huntingtin JBrowse link 14 81,105,139 81,254,637 RGD:1600115
RGD:1624291
positive regulation of autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Becn1 beclin 1 JBrowse link 10 89,209,944 89,225,297 RGD:11561937
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 JBrowse link 2 211,243,398 211,323,283 RGD:1624291
RGD:1600115
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 JBrowse link 3 11,970,401 12,009,463 RGD:1624291
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha JBrowse link 17 85,533,056 85,748,843 RGD:1624291
G Pip4k2b phosphatidylinositol-5-phosphate 4-kinase type 2 beta JBrowse link 10 85,655,223 85,684,138 RGD:1624291
G Pip4k2c phosphatidylinositol-5-phosphate 4-kinase type 2 gamma JBrowse link 7 70,483,948 70,498,995 RGD:1624291
RGD:1600115
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 JBrowse link 13 44,578,208 44,649,876 RGD:1624291
RGD:1600115
G Rab3gap2 RAB3 GTPase activating non-catalytic protein subunit 2 JBrowse link 13 103,157,806 103,229,010 RGD:1624291
RGD:1600115
G Ralb RAS like proto-oncogene B JBrowse link 13 35,494,716 35,531,503 RGD:1600115
RGD:1624291
G Sh3glb1 SH3 domain -containing GRB2-like endophilin B1 JBrowse link 2 250,709,812 250,744,216 RGD:1600115
RGD:1624291
G Ulk1 unc-51 like autophagy activating kinase 1 JBrowse link 12 51,908,105 51,934,704 RGD:13208863
positive regulation of autophagosome maturation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adrb2 adrenoceptor beta 2 JBrowse link 18 57,513,792 57,515,834 RGD:1624291
RGD:1600115
G Calcoco2 calcium binding and coiled-coil domain 2 JBrowse link 10 83,935,087 83,963,750 RGD:1624291
G Clec16a C-type lectin domain containing 16A JBrowse link 10 5,002,196 5,196,914 RGD:1624291
G Fyco1 FYVE and coiled-coil domain autophagy adaptor 1 JBrowse link 8 132,844,042 132,910,905 RGD:1624291
RGD:13792537
G Irgm immunity-related GTPase M JBrowse link 10 34,213,885 34,221,968 RGD:1624291
G Smcr8 SMCR8-C9orf72 complex subunit JBrowse link 10 47,019,326 47,026,465 RGD:1624291
positive regulation of autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07009373.1 RGD:13792537
G AABR07019870.1 RGD:13792537
G AABR07025074.1 RGD:13792537
G AABR07030543.1 RGD:13792537
G AABR07040430.1 RGD:13792537
G AABR07040480.1 RGD:13792537
G AABR07041586.2 RGD:13792537
G AABR07060165.1 RGD:13792537
G AABR07060287.1 RGD:13792537
G AABR07067274.1 RGD:13792537
G AC094217.2 RGD:13792537
G Ager advanced glycosylation end product-specific receptor JBrowse link 20 4,363,152 4,366,079 RGD:7245565
G Ambra1 autophagy and beclin 1 regulator 1 JBrowse link 3 80,634,470 80,830,068 RGD:11552604
G Atg16l1 autophagy related 16-like 1 JBrowse link 9 94,879,876 94,915,231 RGD:1624291
G Atg7 autophagy related 7 JBrowse link 4 146,570,113 146,777,093 RGD:11553823
RGD:11553824
G Becn1 beclin 1 JBrowse link 10 89,209,944 89,225,297 RGD:11553823
G Dapk1 death associated protein kinase 1 JBrowse link 17 4,297,038 4,454,941 RGD:1624291
G Dcn decorin JBrowse link 7 38,742,250 38,782,282 RGD:1624291
G Dhrsx dehydrogenase/reductase X-linked JBrowse link 12 18,516,858 18,521,235 RGD:1624291
RGD:13792537
G Flcn folliculin JBrowse link 10 46,153,185 46,172,331 RGD:1624291
RGD:1600115
G Foxo1 forkhead box O1 JBrowse link 2 141,451,234 141,527,016 RGD:1624291
RGD:1600115
G Foxo3 forkhead box O3 JBrowse link 20 46,428,078 46,519,156 RGD:1624291
G Gsk3a glycogen synthase kinase 3 alpha JBrowse link 1 82,097,244 82,108,238 RGD:1600115
RGD:1624291
G Gsk3b glycogen synthase kinase 3 beta JBrowse link 11 65,060,884 65,208,842 RGD:1600115
RGD:1624291
G Hif1a hypoxia inducible factor 1 subunit alpha JBrowse link 6 96,810,868 96,856,303 RGD:1624291
G Hmg1l1 high-mobility group (nonhistone chromosomal) protein 1-like 1 JBrowse link 19 59,984,234 59,985,494 RGD:13792537
G Hmgb1 high mobility group box 1 JBrowse link 12 7,082,529 7,090,246 RGD:10402086
RGD:13792537
RGD:1624291
G Hmgb4 high-mobility group box 4 JBrowse link 5 146,445,545 146,446,227 RGD:13792537
G Ifng interferon gamma JBrowse link 7 61,337,383 61,341,419 RGD:1600115
RGD:1624291
G Irgm immunity-related GTPase M JBrowse link 10 34,213,885 34,221,968 RGD:1624291
G Kat5 lysine acetyltransferase 5 JBrowse link 1 220,967,795 220,974,596 RGD:1600115
RGD:1624291
G LOC102548927 high mobility group protein B4-like JBrowse link X 53,234,043 53,235,377 RGD:13792537
G LOC108349258 high mobility group protein B4-like JBrowse link X 142,344,626 142,345,439 RGD:13792537
G LOC108350839 high mobility group protein B1-like JBrowse link 4 92,431,517 92,432,354 RGD:13792537
G LOC681067 similar to RIKEN cDNA 1700001F22 JBrowse link X 132,424,185 132,424,955 RGD:13792537
G LOC690117 similar to High mobility group protein 1 (HMG-1) (High mobility group protein B1) (Amphoterin) (Heparin-binding protein p30) JBrowse link 16 37,500,017 37,502,245 RGD:13792537
G LOC691030 similar to RIKEN cDNA 1700001F22 JBrowse link X 130,794,079 130,794,824 RGD:13792537
G Lrrk2 leucine-rich repeat kinase 2 JBrowse link 7 132,857,311 133,018,549 RGD:1624291
RGD:13792537
G Map2k1 mitogen activated protein kinase kinase 1 JBrowse link 8 69,134,218 69,722,573 RGD:12879823
G Mefv MEFV innate immuity regulator, pyrin JBrowse link 10 12,045,813 12,056,229 RGD:1624291
RGD:1600115
G Mid2 midline 2 JBrowse link X 112,019,897 112,121,980 RGD:1624291
G Mtdh metadherin JBrowse link 7 72,771,018 72,830,599 RGD:1624291
G Nprl2 NPR2-like, GATOR1 complex subunit JBrowse link 8 116,297,950 116,301,123 RGD:13792537
G Optn optineurin JBrowse link 17 77,167,700 77,218,374 RGD:1624291
G Pik3c2a phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha JBrowse link 1 185,210,922 185,326,314 RGD:1624291
G Pim2 Pim-2 proto-oncogene, serine/threonine kinase JBrowse link X 15,462,621 15,467,890 RGD:1624291
G Plekhf1 pleckstrin homology and FYVE domain containing 1 JBrowse link 1 94,609,041 94,616,565 RGD:1624291
G Plk2 polo-like kinase 2 JBrowse link 2 41,911,143 41,916,901 RGD:1624291
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 JBrowse link 2 54,857,688 54,893,404 RGD:1624291
RGD:1600115
G Prkaa2 protein kinase AMP-activated catalytic subunit alpha 2 JBrowse link 5 124,568,845 124,642,569 RGD:1600115
RGD:1624291
G Prkd1 protein kinase D1 JBrowse link 6 71,035,017 71,349,531 RGD:1624291
G RGD1560585 similar to RIKEN cDNA 1700001F22 JBrowse link X 144,001,166 144,001,891 RGD:13792537
G RGD1561558 similar to RIKEN cDNA 1700001F22 JBrowse link X 158,261,123 158,261,953 RGD:13792537
G RGD1566225 similar to RIKEN cDNA 1700001F22 JBrowse link X 137,197,195 137,197,990 RGD:13792537
G Rnf152 ring finger protein 152 JBrowse link 13 25,183,295 25,262,785 RGD:1624291
RGD:13792537
RGD:1600115
G Rock1 Rho-associated coiled-coil containing protein kinase 1 JBrowse link 18 1,273,490 1,390,790 RGD:1624291
RGD:1600115
G Sh3bp4 SH3-domain binding protein 4 JBrowse link 9 96,210,750 96,288,903 RGD:1600115
RGD:1624291
G Sh3glb1 SH3 domain -containing GRB2-like endophilin B1 JBrowse link 2 250,709,812 250,744,216 RGD:1624291
G Stk11 serine/threonine kinase 11 JBrowse link 7 12,440,751 12,457,513 RGD:1624291
RGD:1600115
G Svip small VCP interacting protein JBrowse link 1 107,368,117 107,373,807 RGD:1624291
G Tfeb transcription factor EB JBrowse link 9 15,208,141 15,264,101 RGD:1624291
G Ticam1 toll-like receptor adaptor molecule 1 JBrowse link 9 10,780,185 10,790,280 RGD:1624291
G Tlr9 toll-like receptor 9 JBrowse link 8 114,916,122 114,920,171 RGD:2301341
G Tmem59 transmembrane protein 59 JBrowse link 5 126,783,061 126,804,177 RGD:1624291
RGD:13792537
G Tp53inp1 tumor protein p53 inducible nuclear protein 1 JBrowse link 5 24,402,895 24,419,651 RGD:1600115
RGD:1624291
G Tp53inp2 tumor protein p53 inducible nuclear protein 2 JBrowse link 3 150,910,398 150,918,525 RGD:1600115
G Tpcn1 two pore segment channel 1 JBrowse link 12 41,507,784 41,566,847 RGD:1624291
RGD:1600115
G Trim21 tripartite motif-containing 21 JBrowse link 1 167,686,148 167,708,735 RGD:1624291
RGD:13792537
G Trim30c tripartite motif-containing 30C JBrowse link 1 169,492,786 169,514,195 RGD:13792537
G Trim34 tripartite motif-containing 34 JBrowse link 1 169,433,539 169,445,041 RGD:13792537
G Trim58 tripartite motif-containing 58 JBrowse link 10 44,271,587 44,282,726 RGD:13792537
G Trim6 tripartite motif containing 6 JBrowse link 1 169,410,084 169,423,305 RGD:13792537
G Trim65 tripartite motif-containing 65 JBrowse link 10 104,674,956 104,681,055 RGD:1624291
RGD:13792537
G Trim8 tripartite motif-containing 8 JBrowse link 1 266,255,797 266,270,694 RGD:1624291
G Tsc2 TSC complex subunit 2 JBrowse link 10 13,962,006 13,996,684 RGD:1624291
G Ulk1 unc-51 like autophagy activating kinase 1 JBrowse link 12 51,908,105 51,934,704 RGD:1624291
G Xbp1 X-box binding protein 1 JBrowse link 14 85,753,736 85,758,820 RGD:1624291
G Zc3h12a zinc finger CCCH type containing 12A JBrowse link 5 143,111,342 143,120,131 RGD:1624291
positive regulation of autophagy in response to ER overload term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bcl2l11 BCL2 like 11 JBrowse link 3 120,726,906 120,764,192 RGD:13782257
G Bid BH3 interacting domain death agonist JBrowse link 4 153,439,812 153,465,247 RGD:13782257
G Ddit3 DNA-damage inducible transcript 3 JBrowse link 7 70,578,564 70,585,074 RGD:13782257
positive regulation of autophagy of mitochondrion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bnip3 BCL2 interacting protein 3 JBrowse link 1 211,248,098 211,265,282 RGD:11561968
G Fbxo7 F-box protein 7 JBrowse link 7 23,815,246 23,843,505 RGD:1624291
RGD:13792537
RGD:11536096
G Hif1a hypoxia inducible factor 1 subunit alpha JBrowse link 6 96,810,868 96,856,303 RGD:1624291
RGD:1600115
G Htt huntingtin JBrowse link 14 81,105,139 81,254,637 RGD:1600115
RGD:1624291
G Prkn parkin RBR E3 ubiquitin protein ligase JBrowse link 1 48,880,015 50,069,998 RGD:1624291
positive regulation of autophagy of mitochondrion in response to mitochondrial depolarization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atp5if1 ATP synthase inhibitory factor subunit 1 JBrowse link 5 150,719,570 150,723,287 RGD:1624291
G Gba glucosylceramidase beta JBrowse link 2 188,511,781 188,522,602 RGD:1624291
G Hk2 hexokinase 2 JBrowse link 4 113,559,396 113,609,897 RGD:1624291
G Mul1 mitochondrial E3 ubiquitin protein ligase 1 JBrowse link 5 156,855,105 156,864,517 RGD:1624291
G Pink1 PTEN induced kinase 1 JBrowse link 5 156,677,146 156,689,258 RGD:12904014
positive regulation of chaperone-mediated autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Plk3 polo-like kinase 3 JBrowse link 5 135,997,725 136,002,900 RGD:1624291
positive regulation of lipophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adrb2 adrenoceptor beta 2 JBrowse link 18 57,513,792 57,515,834 RGD:1624291
RGD:1600115
G Htt huntingtin JBrowse link 14 81,105,139 81,254,637 RGD:1600115
RGD:1624291
G Sesn2 sestrin 2 JBrowse link 5 150,684,891 150,703,846 RGD:1624291
G Sptlc1 serine palmitoyltransferase, long chain base subunit 1 JBrowse link 17 11,856,525 11,895,566 RGD:1624291
G Sptlc2 serine palmitoyltransferase, long chain base subunit 2 JBrowse link 6 111,334,408 111,417,960 RGD:1624291
positive regulation of macroautophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bnip3 BCL2 interacting protein 3 JBrowse link 1 211,248,098 211,265,282 RGD:1624291
G Bnip3l BCL2 interacting protein 3 like JBrowse link 15 43,643,897 43,667,123 RGD:1624291
G Dcn decorin JBrowse link 7 38,742,250 38,782,282 RGD:1624291
G Epm2a EPM2A glucan phosphatase, laforin JBrowse link 1 5,448,958 5,571,512 RGD:1624291
G Gnai3 G protein subunit alpha i3 JBrowse link 2 210,896,779 210,934,733 RGD:1624291
G Gpsm1 G-protein signaling modulator 1 JBrowse link 3 3,767,394 3,794,360 RGD:1624291
G Hif1a hypoxia inducible factor 1 subunit alpha JBrowse link 6 96,810,868 96,856,303 RGD:1624291
RGD:1600115
G Hmox1 heme oxygenase 1 JBrowse link 19 14,508,634 14,515,455 RGD:1624291
G Ikbkg inhibitor of nuclear factor kappa B kinase regulatory subunit gamma JBrowse link X 156,254,187 156,280,046 RGD:1624291
G Il4 interleukin 4 JBrowse link 10 38,963,979 38,969,531 RGD:1600115
RGD:13792537
RGD:1624291
G Kdr kinase insert domain receptor JBrowse link 14 34,727,677 34,787,127 RGD:1624291
RGD:1600115
G Larp1 La ribonucleoprotein 1, translational regulator JBrowse link 10 43,435,738 43,501,186 RGD:1624291
G Map3k7 mitogen activated protein kinase kinase kinase 7 JBrowse link 5 47,183,142 47,244,424 RGD:1624291
G Pafah1b2 platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 JBrowse link 8 50,256,969 50,310,043 RGD:1624291
G Pim2 Pim-2 proto-oncogene, serine/threonine kinase JBrowse link X 15,462,621 15,467,890 RGD:1624291
G Pink1 PTEN induced kinase 1 JBrowse link 5 156,677,146 156,689,258 RGD:1624291
G Rab12 RAB12, member RAS oncogene family JBrowse link 9 114,683,985 114,709,613 RGD:1624291
G RGD1359108 similar to RIKEN cDNA 3110043O21 JBrowse link 5 50,666,444 50,691,523 RGD:1600115
RGD:1624291
G Rufy4 RUN and FYVE domain containing 4 JBrowse link 9 81,401,080 81,422,016 RGD:1624291
RGD:13792537
G Scoc short coiled-coil protein JBrowse link 19 24,584,435 24,614,167 RGD:1624291
RGD:1600115
G Sesn1 sestrin 1 JBrowse link 20 46,667,116 46,758,306 RGD:13792537
G Sesn2 sestrin 2 JBrowse link 5 150,684,891 150,703,846 RGD:1624291
RGD:13792537
G Sesn3 sestrin 3 JBrowse link 8 12,823,060 12,878,749 RGD:13792537
G Sirt1 sirtuin 1 JBrowse link 20 26,831,971 26,851,587 RGD:1624291
RGD:1600115
G Sting1 stimulator of interferon response cGAMP interactor 1 JBrowse link 18 28,529,537 28,535,828 RGD:1600115
RGD:13792537
RGD:1624291
G Supt5h SPT5 homolog, DSIF elongation factor subunit JBrowse link 1 85,437,780 85,466,854 RGD:1624291
G Tbk1 TANK-binding kinase 1 JBrowse link 7 63,655,247 63,687,978 RGD:1624291
G Trim13 tripartite motif-containing 13 JBrowse link 15 41,897,191 41,936,545 RGD:1624291
RGD:13792537
G Tsc1 TSC complex subunit 1 JBrowse link 3 7,219,955 7,269,063 RGD:10448950
G Tsc2 TSC complex subunit 2 JBrowse link 10 13,962,006 13,996,684 RGD:1624291
RGD:1600115
G Wac WW domain containing adaptor with coiled-coil JBrowse link 17 60,887,606 60,946,630 RGD:1624291
positive regulation of mitophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Prkn parkin RBR E3 ubiquitin protein ligase JBrowse link 1 48,880,015 50,069,998 RGD:13432560
G Vps13d vacuolar protein sorting 13 homolog D JBrowse link 5 162,891,451 163,119,239 RGD:1624291
positive regulation of mitophagy in response to mitochondrial depolarization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdc37 cell division cycle 37, HSP90 cochaperone JBrowse link 8 22,160,922 22,173,797 RGD:1624291
RGD:1600115
G Hdac6 histone deacetylase 6 JBrowse link X 15,295,372 15,316,673 RGD:1624291
G Huwe1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 JBrowse link X 21,474,627 21,603,348 RGD:1600115
RGD:1624291
G Pink1 PTEN induced kinase 1 JBrowse link 5 156,677,146 156,689,258 RGD:1624291
G Prkn parkin RBR E3 ubiquitin protein ligase JBrowse link 1 48,880,015 50,069,998 RGD:1624291
G Tomm7 translocase of outer mitochondrial membrane 7 JBrowse link 4 7,835,949 7,842,790 RGD:1624291
positive regulation of xenophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 JBrowse link 3 11,970,401 12,009,463 RGD:1624291
G Mapk3 mitogen activated protein kinase 3 JBrowse link 1 198,192,773 198,198,975 RGD:1624291
G Nod1 nucleotide-binding oligomerization domain containing 1 JBrowse link 4 85,123,965 85,175,206 RGD:1624291
G Nod2 nucleotide-binding oligomerization domain containing 2 JBrowse link 19 19,342,061 19,389,366 RGD:1624291
G Optn optineurin JBrowse link 17 77,167,700 77,218,374 RGD:1624291
RGD:1600115
G Ripk2 receptor-interacting serine-threonine kinase 2 JBrowse link 5 29,838,713 29,870,390 RGD:1624291
G Tbk1 TANK-binding kinase 1 JBrowse link 7 63,655,247 63,687,978 RGD:1624291
G Tlr2 toll-like receptor 2 JBrowse link 2 182,840,171 182,846,061 RGD:1624291
protein lipidation involved in autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atg16l1 autophagy related 16-like 1 JBrowse link 9 94,879,876 94,915,231 RGD:1624291
G Atg5 autophagy related 5 JBrowse link 20 49,301,783 49,393,147 RGD:1624291
RGD:1600115
G Irgm immunity-related GTPase M JBrowse link 10 34,213,885 34,221,968 RGD:1624291
G Wipi2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 12 13,969,704 13,998,134 RGD:1624291
protein localization to phagophore assembly site term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atg13 autophagy related 13 JBrowse link 3 80,580,549 80,614,554 RGD:13792537
G Atg16l1 autophagy related 16-like 1 JBrowse link 9 94,879,876 94,915,231 RGD:1624291
G Atg9a autophagy related 9A JBrowse link 9 82,382,800 82,393,429 RGD:13792537
G Atg9b autophagy related 9B JBrowse link 4 7,314,369 7,322,095 RGD:13792537
G Mfn2 mitofusin 2 JBrowse link 5 164,684,244 164,715,414 RGD:1624291
G Pacs2 phosphofurin acidic cluster sorting protein 2 JBrowse link 6 137,824,136 137,889,144 RGD:1624291
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 JBrowse link 18 22,964,121 23,047,896 RGD:1624291
G Stx17 syntaxin 17 JBrowse link 5 63,866,346 63,926,276 RGD:1624291
G Trappc8 trafficking protein particle complex 8 JBrowse link 18 15,298,673 15,375,034 RGD:13792537
G Wdr45 WD repeat domain 45 JBrowse link X 15,621,249 15,627,159 RGD:13792537
G Wdr45b WD repeat domain 45B JBrowse link 10 110,523,843 110,555,769 RGD:13792537
G Wipi1 WD repeat domain, phosphoinositide interacting 1 JBrowse link 10 97,859,730 97,896,949 RGD:13792537
G Wipi2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 12 13,969,704 13,998,134 RGD:1624291
RGD:1600115
RGD:13792537
protein targeting to lysosome involved in chaperone-mediated autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07011951.1 RGD:13792537
G AABR07033324.1 RGD:13792537
G Hsc70-ps1 heat shock cognate protein 70, pseudogene 1 JBrowse link 2 177,651,231 177,653,349 RGD:13792537
G Hspa8 heat shock protein family A (Hsp70) member 8 JBrowse link 8 44,989,401 44,993,261 RGD:1624291
RGD:13792537
G Lamp2 lysosomal-associated membrane protein 2 JBrowse link X 124,722,628 124,766,079 RGD:10412301
RGD:13792537
RGD:1600115
RGD:1624291
G LOC680121 similar to heat shock protein 8 JBrowse link 11 13,499,168 13,501,271 RGD:13792537
protein targeting to vacuole involved in autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 JBrowse link 12 11,433,815 11,526,465 RGD:1624291
regulation of autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07006774.1 RGD:13792537
G AABR07006775.1 RGD:13792537
G Ift20 intraflagellar transport 20 JBrowse link 10 65,805,808 65,811,353 RGD:1624291
G Ift88 intraflagellar transport 88 JBrowse link 15 37,690,417 37,786,855 RGD:1624291
G LOC100363782 RAB1B, member RAS oncogene family-like RGD:1600115
G LOC102555167 ras-related protein Rab-1B-like JBrowse link 1 220,480,828 220,491,456 RGD:1600115
G LOC685933 hypothetical protein LOC685933 JBrowse link 1 257,828,474 257,885,689 RGD:13792537
G Mtmr3 myotubularin related protein 3 JBrowse link 14 84,701,559 84,820,487 RGD:1624291
RGD:1600115
G Nprl2 NPR2-like, GATOR1 complex subunit JBrowse link 8 116,297,950 116,301,123 RGD:13792537
G Nprl3 NPR3-like, GATOR1 complex subunit JBrowse link 10 15,620,824 15,661,332 RGD:13792537
G Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing JBrowse link 9 71,911,744 72,005,816 RGD:1624291
G Rab1b RAB1B, member RAS oncogene family JBrowse link 1 220,483,529 220,491,469 RGD:1600115
RGD:1624291
G RGD1359108 similar to RIKEN cDNA 3110043O21 JBrowse link 5 50,666,444 50,691,523 RGD:1600115
RGD:1624291
G Rnf5 ring finger protein 5 JBrowse link 20 4,366,244 4,368,690 RGD:1624291
G Tbc1d12 TBC1 domain family, member 12 JBrowse link 1 257,517,128 257,599,659 RGD:13792537
G Tbc1d14 TBC1 domain family, member 14 JBrowse link 14 79,172,272 79,438,765 RGD:1624291
RGD:13792537
RGD:1600115
G Ubqln2 ubiquilin 2 JBrowse link X 18,723,313 18,726,732 RGD:1624291
regulation of autophagosome maturation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Clec16a C-type lectin domain containing 16A JBrowse link 10 5,002,196 5,196,914 RGD:13792537
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin JBrowse link 1 197,986,384 197,999,726 RGD:1624291
G Tbc1d25 TBC1 domain family, member 25 JBrowse link X 15,064,733 15,088,579 RGD:1624291
RGD:13792537
regulation of autophagosome size term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atp13a2 ATPase cation transporting 13A2 JBrowse link 5 159,512,208 159,531,631 RGD:1624291
RGD:13442482
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin JBrowse link 1 197,986,384 197,999,726 RGD:1624291
regulation of autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acer2 alkaline ceramidase 2 JBrowse link 5 105,230,540 105,279,732 RGD:1624291
G Atm ATM serine/threonine kinase JBrowse link 8 58,015,938 58,119,973 RGD:1624291
G Bcl2 BCL2, apoptosis regulator JBrowse link 13 26,605,426 26,769,374 RGD:1624291
G Bok BCL2 family apoptosis regulator BOK JBrowse link 9 100,829,593 100,840,498 RGD:1624291
G Casp1 caspase 1 JBrowse link 8 2,605,743 2,614,637 RGD:1624291
RGD:1600115
G Chmp4b charged multivesicular body protein 4B JBrowse link 3 150,188,275 150,227,453 RGD:1624291
G Cisd2 CDGSH iron sulfur domain 2 JBrowse link 2 240,586,754 240,611,560 RGD:1624291
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin JBrowse link 1 197,986,384 197,999,726 RGD:1624291
G Ddit3 DNA-damage inducible transcript 3 JBrowse link 7 70,578,564 70,585,074 RGD:14390049
G Depdc5 DEP domain containing 5, GATOR1 subcomplex subunit JBrowse link 14 83,089,000 83,219,576 RGD:13792537
G Depp1 DEPP1, autophagy regulator JBrowse link 4 148,780,330 148,784,566 RGD:1600115
RGD:13792537
RGD:1624291
G Dram1 DNA-damage regulated autophagy modulator 1 JBrowse link 7 28,898,647 28,932,641 RGD:1624291
RGD:13792537
G Dram2 DNA-damage regulated autophagy modulator 2 JBrowse link 2 209,160,901 209,189,641 RGD:1624291
RGD:13792537
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit JBrowse link 10 2,010,140 2,037,953 RGD:1624291
G Fbxl2 F-box and leucine-rich repeat protein 2 JBrowse link 8 122,240,393 122,290,439 RGD:1624291
G Gpr137b G protein-coupled receptor 137B JBrowse link 17 90,670,852 90,709,003 RGD:1624291
RGD:13792537
G Kat8 lysine acetyltransferase 8 JBrowse link 1 199,360,645 199,372,925 RGD:1624291
G Keap1 Kelch-like ECH-associated protein 1 JBrowse link 8 22,250,518 22,259,868 RGD:1624291
RGD:1600115
G Lamp3 lysosomal-associated membrane protein 3 JBrowse link 11 84,930,965 85,000,694 RGD:1624291
G Lmx1b LIM homeobox transcription factor 1 beta JBrowse link 3 12,608,748 12,686,937 RGD:1624291
G LOC108348096 ras-related GTP-binding protein B JBrowse link X 19,336,382 19,369,872 RGD:13792537
G LOC689412 similar to CG4025-PA JBrowse link 13 65,550,673 65,551,379 RGD:13792537
G Lrrk2 leucine-rich repeat kinase 2 JBrowse link 7 132,857,311 133,018,549 RGD:1624291
G Mapk15 mitogen-activated protein kinase 15 JBrowse link 7 117,041,287 117,061,799 RGD:1600115
RGD:1624291
G Mapt microtubule-associated protein tau JBrowse link 10 92,289,002 92,386,517 RGD:1624291
RGD:1600115
G Mfsd8 major facilitator superfamily domain containing 8 JBrowse link 2 127,706,618 127,784,129 RGD:1624291
G Mtcl1 microtubule crosslinking factor 1 JBrowse link 9 114,493,901 114,632,632 RGD:1600115
G Mtmr3 myotubularin related protein 3 JBrowse link 14 84,701,559 84,820,487 RGD:13792537
G Mtmr4 myotubularin related protein 4 JBrowse link 10 74,886,600 74,909,532 RGD:13792537
G Mtor mechanistic target of rapamycin kinase JBrowse link 5 165,263,813 165,373,967 RGD:1600115
RGD:1624291
G Nlrp6 NLR family, pyrin domain containing 6 JBrowse link 1 213,676,954 213,683,114 RGD:1624291
G Nupr1 nuclear protein 1, transcriptional regulator JBrowse link 1 194,767,484 194,769,519 RGD:14390049
G Pik3r2 phosphoinositide-3-kinase regulatory subunit 2 JBrowse link 16 20,415,109 20,424,982 RGD:1624291
RGD:1600115
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha JBrowse link 17 85,533,056 85,748,843 RGD:1624291
G Pip4k2b phosphatidylinositol-5-phosphate 4-kinase type 2 beta JBrowse link 10 85,655,223 85,684,138 RGD:1624291
G Pip4k2c phosphatidylinositol-5-phosphate 4-kinase type 2 gamma JBrowse link 7 70,483,948 70,498,995 RGD:1624291
G Prkn parkin RBR E3 ubiquitin protein ligase JBrowse link 1 48,880,015 50,069,998 RGD:1624291
RGD:1600115
G Pycard PYD and CARD domain containing JBrowse link 1 199,438,029 199,439,062 RGD:1624291
G Rab8a RAB8A, member RAS oncogene family JBrowse link 16 19,355,047 19,376,776 RGD:1624291
RGD:1600115
G RGD1359108 similar to RIKEN cDNA 3110043O21 JBrowse link 5 50,666,444 50,691,523 RGD:1624291
RGD:1600115
G Rmc1 regulator of MON1-CCZ1 JBrowse link 18 3,597,210 3,617,160 RGD:1624291
G Rptor regulatory associated protein of MTOR, complex 1 JBrowse link 10 108,750,620 109,058,691 RGD:13792537
G Rraga Ras-related GTP binding A JBrowse link 5 104,941,067 104,942,662 RGD:13792537
G RragB Ras-related GTP binding B JBrowse link X 19,085,913 19,135,049 RGD:13792537
G Rragc Ras-related GTP binding C JBrowse link 5 141,572,536 141,590,784 RGD:13792537
G Rragd Ras-related GTP binding D JBrowse link 5 48,224,994 48,260,691 RGD:13792537
G Smcr8 SMCR8-C9orf72 complex subunit JBrowse link 10 47,019,326 47,026,465 RGD:1624291
G Soga1 suppressor of glucose, autophagy associated 1 JBrowse link 3 153,130,268 153,188,909 RGD:1624291
G Soga3 SOGA family member 3 JBrowse link 1 31,066,241 31,124,885 RGD:1600115
G Tmem150a transmembrane protein 150A JBrowse link 4 100,217,986 100,222,131 RGD:13792537
G Tmem150b transmembrane protein 150B JBrowse link 1 72,692,089 72,701,732 RGD:13792537
G Tmem150c transmembrane protein 150C JBrowse link 14 11,094,655 11,166,323 RGD:13792537
G Tpcn2 two pore segment channel 2 JBrowse link 1 218,419,182 218,448,902 RGD:1624291
G Trib3 tribbles pseudokinase 3 JBrowse link 3 147,814,056 147,819,650 RGD:14390049
G Ulk1 unc-51 like autophagy activating kinase 1 JBrowse link 12 51,908,105 51,934,704 RGD:13792537
G Ulk2 unc-51 like autophagy activating kinase 2 JBrowse link 10 48,050,079 48,129,377 RGD:13792537
G Usp10 ubiquitin specific peptidase 10 JBrowse link 19 52,566,274 52,608,820 RGD:1624291
RGD:13792537
RGD:1600115
G Usp13 ubiquitin specific peptidase 13 JBrowse link 2 119,197,153 119,317,507 RGD:1624291
G Usp33 ubiquitin specific peptidase 33 JBrowse link 2 257,567,179 257,602,817 RGD:1624291
G Vps29 VPS29 retromer complex component JBrowse link 12 39,690,069 39,699,114 RGD:1624291
G Wdr24 WD repeat domain 24 JBrowse link 10 15,191,078 15,195,860 RGD:1624291
G Wdr41 WD repeat domain 41 JBrowse link 2 24,668,108 24,717,280 RGD:1624291
G Xbp1 X-box binding protein 1 JBrowse link 14 85,753,736 85,758,820 RGD:1624291
RGD:1600115
G Xpa XPA, DNA damage recognition and repair factor JBrowse link 5 61,749,767 61,793,641 RGD:1624291
G Zmpste24 zinc metallopeptidase STE24 JBrowse link 5 139,982,404 140,015,541 RGD:1624291
regulation of autophagy of mitochondrion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bnip3l BCL2 interacting protein 3 like JBrowse link 15 43,643,897 43,667,123 RGD:1624291
G Cttn cortactin JBrowse link 1
1
217,602,698
215,255,385
217,638,196
215,290,882
RGD:1624291
G Dnm1l dynamin 1-like JBrowse link 11 88,830,968 88,882,271 RGD:1624291
RGD:13792537
G Fbxw7 F-box and WD repeat domain containing 7 JBrowse link 2 184,230,191 184,309,805 RGD:1624291
G Gsk3a glycogen synthase kinase 3 alpha JBrowse link 1 82,097,244 82,108,238 RGD:1624291
G Parl presenilin associated, rhomboid-like JBrowse link 11 84,517,368 84,544,463 RGD:1624291
RGD:1600115
G Srebf1 sterol regulatory element binding transcription factor 1 JBrowse link 10 46,570,996 46,593,021 RGD:1624291
G Vdac1 voltage-dependent anion channel 1 JBrowse link 10 37,724,915 37,752,827 RGD:1624291
regulation of chaperone-mediated autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gfap glial fibrillary acidic protein JBrowse link 10 90,990,762 90,999,435 RGD:10412296
RGD:1624291
regulation of macroautophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atp13a2 ATPase cation transporting 13A2 JBrowse link 5 159,512,208 159,531,631 RGD:1624291
G Atp6v0a1 ATPase H+ transporting V0 subunit a1 JBrowse link 10 88,914,264 88,967,736 RGD:1624291
RGD:1600115
G Hdac6 histone deacetylase 6 JBrowse link X 15,295,372 15,316,673 RGD:1624291
G Prkaa2 protein kinase AMP-activated catalytic subunit alpha 2 JBrowse link 5 124,568,845 124,642,569 RGD:1600115
RGD:1624291
G Ubqln1 ubiquilin 1 JBrowse link 17 6,840,441 6,878,842 RGD:13792537
G Ubqln2 ubiquilin 2 JBrowse link X 18,723,313 18,726,732 RGD:1624291
RGD:13792537
reticulophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LOC103689968 protein FAM134B JBrowse link 2 78,103,358 78,257,109 RGD:1600115
RGD:13792537
G LOC103690028 zinc finger protein 622 JBrowse link 2 78,261,699 78,276,942 RGD:1600115
G Rb1cc1 RB1-inducible coiled-coil 1 JBrowse link 5 13,033,918 13,097,369 RGD:13792537
RGD:1624291
G Retreg1 reticulophagy regulator 1 JBrowse link 2 78,391,921 78,401,569 RGD:1624291
RGD:1600115
RGD:13792537
G Sting1 stimulator of interferon response cGAMP interactor 1 JBrowse link 18 28,529,537 28,535,828 RGD:1600115
RGD:13792537
RGD:1624291
G Tex264 testis expressed 264 JBrowse link 8 115,360,706 115,388,299 RGD:1624291
selective autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sqstm1 sequestosome 1 JBrowse link 10 35,704,728 35,716,316 RGD:1600115
RGD:1624291
substrate localization to autophagosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 JBrowse link 12 11,433,815 11,526,465 RGD:1624291
suppression by virus of host autophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atg7 autophagy related 7 JBrowse link 4 146,570,113 146,777,093 RGD:1624291
xenophagy term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atg16l1 autophagy related 16-like 1 JBrowse link 9 94,879,876 94,915,231 RGD:1624291
G Calcoco2 calcium binding and coiled-coil domain 2 JBrowse link 10 83,935,087 83,963,750 RGD:1624291
G Lgals8 galectin 8 JBrowse link 17 66,487,451 66,515,316 RGD:1600115
RGD:1624291
G Wipi2 WD repeat domain, phosphoinositide interacting 2 JBrowse link 12 13,969,704 13,998,134 RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19578
    cellular process 18362
      process utilizing autophagic mechanism 440
        autophagy 440
          autophagy of mitochondrion + 72
          autophagy of nucleus + 14
          autophagy of peroxisome + 6
          chaperone-mediated autophagy + 18
          late endosomal microautophagy 7
          lysosomal microautophagy + 3
          macroautophagy + 211
          negative regulation of autophagy + 77
          positive regulation of autophagy + 149
          protein targeting to vacuole involved in autophagy + 7
          regulation of autophagy + 289
Path 2
Term Annotations click to browse term
  biological_process 19578
    metabolic process 11901
      catabolic process 2481
        cellular catabolic process 2120
          autophagy 440
            autophagy of mitochondrion + 72
            autophagy of nucleus + 14
            autophagy of peroxisome + 6
            chaperone-mediated autophagy + 18
            late endosomal microautophagy 7
            lysosomal microautophagy + 3
            macroautophagy + 211
            negative regulation of autophagy + 77
            positive regulation of autophagy + 149
            protein targeting to vacuole involved in autophagy + 7
            regulation of autophagy + 289
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.