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ONTOLOGY REPORT - ANNOTATIONS


Term:substrate-dependent cell migration
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Accession:GO:0006929 term browser browse the term
Definition:The orderly movement of a cell from one site to another along a substrate such as the extracellular matrix; the migrating cell forms a protrusion that attaches to the substrate.
Synonyms:exact_synonym: substrate-bound cell migration


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substrate-dependent cell migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anks1a ankyrin repeat and sterile alpha motif domain containing 1A ISO (MGI:MGI:3768579|PMID:17875921) RGD PMID:17875921 MGI:MGI:3768579 NCBI chr20:7,484,550...7,636,498
Ensembl chr20:7,484,550...7,636,497
JBrowse link
G Cspg4 chondroitin sulfate proteoglycan 4 IEA
ISO
GO_REF:0000107
MGI:MGI:1924307 (MGI:MGI:5699914|PMID:26437238)
Ensembl
RGD
PMID:26437238 GO_REF:0000107, MGI:MGI:5699914 NCBI chr 8:61,532,465...61,567,510
Ensembl chr 8:61,532,465...61,567,510
JBrowse link
G Epha8 Eph receptor A8 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:3768579|PMID:17875921)
Ensembl
UniProt
RGD
PMID:17875921 GO_REF:0000024, GO_REF:0000107, MGI:MGI:3768579 NCBI chr 5:155,293,731...155,321,016
Ensembl chr 5:155,295,314...155,316,495
JBrowse link
G Fmnl1 formin-like 1 ISO (MGI:MGI:1888617|PMID:10958683) RGD PMID:10958683 MGI:MGI:1888617 NCBI chr10:91,253,757...91,281,422
Ensembl chr10:91,254,058...91,281,418
JBrowse link
G Itga11 integrin subunit alpha 11 ISO (MGI:MGI:3051941|PMID:15183724)
(PMID:11518510)
RGD PMID:11518510, PMID:15183724 MGI:MGI:3051941 NCBI chr 8:67,566,874...67,683,973
Ensembl chr 8:67,615,635...67,683,973
JBrowse link
G Itga2 integrin subunit alpha 2 ISO (PMID:11518510) RGD PMID:11518510 NCBI chr 2:46,996,904...47,097,011
Ensembl chr 2:47,000,323...47,096,961
JBrowse link
G Pdgfb platelet derived growth factor subunit B ISO (MGI:MGI:3051941|PMID:15183724) RGD PMID:15183724 MGI:MGI:3051941 NCBI chr 7:121,215,458...121,233,092
Ensembl chr 7:121,214,628...121,232,741
JBrowse link
G Snai2 snail family transcriptional repressor 2 ISO MGI:MGI:2447175 (MGI:MGI:3808643|PMID:18663143) RGD PMID:18663143 MGI:MGI:3808643 NCBI chr11:90,404,421...90,406,730
Ensembl chr11:90,403,333...90,406,797
JBrowse link
G Ston1 stonin 1 ISO MGI:MGI:2153093|MGI:MGI:5788726 (MGI:MGI:5699914|PMID:26437238) RGD PMID:26437238 MGI:MGI:5699914 NCBI chr 6:12,332,465...12,379,783
Ensembl chr 6:12,362,813...12,379,783
JBrowse link
chemorepulsion involved in postnatal olfactory bulb interneuron migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Robo1 roundabout guidance receptor 1 IEA
ISO
GO_REF:0000107
(PMID:15207848)
Ensembl
RGD
PMID:15207848 GO_REF:0000107 NCBI chr11:9,079,291...10,146,302
Ensembl chr11:9,642,365...10,143,317
JBrowse link
G Slit2 slit guidance ligand 2 IEA
ISO
GO_REF:0000107
(PMID:15207848)
Ensembl
RGD
PMID:15207848 GO_REF:0000107 NCBI chr14:66,831,848...67,171,491
Ensembl chr14:66,831,848...67,170,361
JBrowse link
motogenic signaling involved in postnatal olfactory bulb interneuron migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr1 Fibroblast growth factor receptor 1 IMP RGD PMID:20083104 RGD:2325172 NCBI chr16:71,265,390...71,319,046
Ensembl chr16:71,266,248...71,319,449
JBrowse link
negative regulation of cell adhesion involved in substrate-bound cell migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp5f1b ATP synthase F1 subunit beta ISO
IEA
(MGI:MGI:3719337|PMID:17612527)
GO_REF:0000107
RGD
Ensembl
PMID:17612527 GO_REF:0000107, MGI:MGI:3719337 NCBI chr 7:2,504,708...2,511,748
Ensembl chr 7:2,504,695...2,511,749
JBrowse link
G Itgb1bp1 integrin subunit beta 1 binding protein 1 ISO (MGI:MGI:5486544|PMID:18227284) RGD PMID:18227284 MGI:MGI:5486544 NCBI chr 6:43,348,927...43,363,633
Ensembl chr 6:43,348,958...43,363,335
JBrowse link
G Ptprc protein tyrosine phosphatase, receptor type, C ISO (PMID:21911094) RGD PMID:21911094 NCBI chr13:55,061,561...55,174,150
Ensembl chr13:55,061,562...55,173,692
JBrowse link
G Snai2 snail family transcriptional repressor 2 ISO MGI:MGI:2447175 (MGI:MGI:3808643|PMID:18663143) RGD PMID:18663143 MGI:MGI:3808643 NCBI chr11:90,404,421...90,406,730
Ensembl chr11:90,403,333...90,406,797
JBrowse link
positive regulation of fibronectin-dependent thymocyte migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adam8 ADAM metallopeptidase domain 8 ISO (MGI:MGI:4836302|PMID:20856819) RGD PMID:20856819 MGI:MGI:4836302 NCBI chr 1:212,317,510...212,332,895
Ensembl chr 1:212,317,848...212,330,349
JBrowse link
positive regulation of substrate-dependent cell migration, cell attachment to substrate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fbln1 fibulin 1 ISO (PMID:25834989) RGD PMID:25834989 NCBI chr 7:126,096,793...126,176,468
Ensembl chr 7:126,096,793...126,176,468
JBrowse link
G Fn1 fibronectin 1 IEA
ISO
GO_REF:0000107
(PMID:25834989)
Ensembl
RGD
PMID:25834989 GO_REF:0000107 NCBI chr 9:78,900,111...78,969,018
Ensembl chr 9:78,900,103...78,969,078
JBrowse link
G Stk4 serine/threonine kinase 4 ISO (MGI:MGI:3821942|PMID:19073936) RGD PMID:19073936 MGI:MGI:3821942 NCBI chr 3:160,467,552...160,546,540
Ensembl chr 3:160,467,552...160,546,540
JBrowse link
substrate-dependent cell migration, cell attachment to substrate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 ISO MGI:MGI:3822451 (MGI:MGI:3821807|PMID:18794329) RGD PMID:18794329 MGI:MGI:3821807 NCBI chr13:35,622,472...35,673,449
Ensembl chr13:35,580,098...35,668,968
JBrowse link
G Spag6l sperm associated antigen 6-like ISO
IEA
MGI:MGI:2662475 (MGI:MGI:6219093|PMID:26585507)
GO_REF:0000107
RGD
Ensembl
PMID:26585507 GO_REF:0000107, MGI:MGI:6219093 NCBI chr11:88,424,493...88,517,910
Ensembl chr11:88,424,414...88,508,601
JBrowse link
G Tnfrsf12a TNF receptor superfamily member 12A ISO (MGI:MGI:1347374|PMID:10551889) RGD PMID:10551889 MGI:MGI:1347374 NCBI chr10:12,995,904...12,997,930
Ensembl chr10:12,995,904...12,997,930
JBrowse link
substrate-dependent cell migration, cell contraction term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcc9 ATP binding cassette subfamily C member 9 NAS RGD PMID:11967023 RGD:728123 NCBI chr 4:176,806,098...176,928,540
Ensembl chr 4:176,805,431...176,922,424
JBrowse link
substrate-dependent cell migration, cell extension term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl2 ABL proto-oncogene 2, non-receptor tyrosine kinase ISO MGI:MGI:109601|MGI:MGI:99695 (MGI:MGI:3847812|PMID:19414610) RGD PMID:19414610 MGI:MGI:3847812 NCBI chr13:74,154,533...74,333,244
Ensembl chr13:74,154,835...74,333,244
JBrowse link
G Cttn cortactin ISO MGI:MGI:109601|MGI:MGI:87860 (MGI:MGI:3847812|PMID:19414610) RGD PMID:19414610 MGI:MGI:3847812 NCBI chr 1:217,602,698...217,638,196
NCBI chr 1:215,255,385...215,290,882
Ensembl chr 1:217,602,698...217,638,152
Ensembl chr 1:217,602,698...217,638,152
JBrowse link
G Myh10 myosin heavy chain 10 ISO
IEA
MGI:MGI:2386445 (MGI:MGI:3042323|PMID:14699073)
GO_REF:0000107
RGD
Ensembl
PMID:14699073 GO_REF:0000107, MGI:MGI:3042323 NCBI chr10:55,274,910...55,406,738
Ensembl chr10:55,275,411...55,406,732
JBrowse link
G Nck1 NCK adaptor protein 1 ISO MGI:MGI:87860|MGI:MGI:99695 (MGI:MGI:3847812|PMID:19414610) RGD PMID:19414610 MGI:MGI:3847812 NCBI chr 8:108,787,797...108,847,779
Ensembl chr 8:108,787,798...108,847,779
JBrowse link
G Nrp1 neuropilin 1 ISO (PMID:24863063) RGD PMID:24863063 NCBI chr19:61,332,351...61,486,166
Ensembl chr19:61,332,351...61,485,858
JBrowse link
G Ntn1 netrin 1 IDA PMID:23453953 UniProt PMID:23453953 RGD:10054078 NCBI chr10:54,761,925...54,982,072
Ensembl chr10:54,761,871...54,967,585
JBrowse link
G P2ry12 purinergic receptor P2Y12 ISO
ISS
(MGI:MGI:3693016|PMID:17115040)
GO_REF:0000024
RGD
ParkinsonsUK-UCL
PMID:17115040 GO_REF:0000024, MGI:MGI:3693016 NCBI chr 2:149,440,807...149,482,592
Ensembl chr 2:149,441,598...149,444,548
JBrowse link
G Shtn1 shootin 1 IDA PMID:23453953 UniProt PMID:23453953 RGD:10054078 NCBI chr 1:280,129,228...280,233,873
Ensembl chr 1:280,130,504...280,233,929
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    locomotion 1938
      cell motility 1745
        cell migration 1571
          substrate-dependent cell migration 31
            extracellular matrix-dependent thymocyte migration + 1
            negative regulation of cell adhesion involved in substrate-bound cell migration + 4
            substrate-dependent cell migration, cell attachment to substrate + 6
            substrate-dependent cell migration, cell contraction 1
            substrate-dependent cell migration, cell extension 8
            substrate-dependent cerebral cortex tangential migration + 3
Path 2
Term Annotations click to browse term
  biological_process 20014
    cellular process 18788
      movement of cell or subcellular component 2186
        cell motility 1745
          cell migration 1571
            substrate-dependent cell migration 31
              extracellular matrix-dependent thymocyte migration + 1
              negative regulation of cell adhesion involved in substrate-bound cell migration + 4
              substrate-dependent cell migration, cell attachment to substrate + 6
              substrate-dependent cell migration, cell contraction 1
              substrate-dependent cell migration, cell extension 8
              substrate-dependent cerebral cortex tangential migration + 3
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.