ONTOLOGY REPORT - ANNOTATIONS


Term:nucleus organization
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Accession:GO:0006997 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the nucleus.
Synonyms:exact_synonym: nuclear organisation;   nuclear organization
 related_synonym: nuclear morphology;   nuclear organization and biogenesis;   nucleus organization and biogenesis
 alt_id: GO:0048287
 xref: MIPS_funcat:42.10


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nucleus organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bin1 bridging integrator 1 JBrowse link 18 25,163,575 25,222,139 RGD:1624291
RGD:1600115
G Cep55 centrosomal protein 55 JBrowse link 1 256,745,251 256,760,794 RGD:1624291
G Chek1 checkpoint kinase 1 JBrowse link 8 39,181,162 39,201,588 RGD:1624291
G Chmp1a charged multivesicular body protein 1A JBrowse link 19 56,001,724 56,010,004 RGD:1624291
RGD:1600115
G Chmp1b charged multivesicular body protein 1B JBrowse link 18 62,923,620 62,926,150 RGD:1624291
G Chmp2a charged multivesicular body protein 2A JBrowse link 1 65,540,808 65,543,708 RGD:1624291
G Chmp2b charged multivesicular body protein 2B JBrowse link 11 2,666,405 2,692,213 RGD:1624291
RGD:1600115
G Chmp3 charged multivesicular body protein 3 JBrowse link 4 99,449,213 99,496,156 RGD:1624291
G Chmp4b charged multivesicular body protein 4B JBrowse link 3 150,188,275 150,227,453 RGD:1624291
G Chmp4c charged multivesicular body protein 4C JBrowse link 2 93,574,554 93,641,497 RGD:1600115
RGD:1624291
G Chmp5 charged multivesicular body protein 5 JBrowse link 5 57,267,312 57,284,455 RGD:1624291
RGD:1600115
G Chmp6 charged multivesicular body protein 6 JBrowse link 10 109,073,678 109,079,348 RGD:1624291
RGD:1600115
G Chmp7 charged multivesicular body protein 7 JBrowse link 15 51,385,373 51,400,606 RGD:1624291
G Golm1 golgi membrane protein 1 JBrowse link 17 5,373,095 5,411,186 RGD:1624291
RGD:1600115
G H3f3a H3 histone family member 3A JBrowse link 13 99,091,246 99,102,828 RGD:1600115
G H3f3b H3 histone family member 3B JBrowse link 10 104,573,666 104,575,890 RGD:1624291
RGD:1600115
G Lemd3 LEM domain containing 3 JBrowse link 7 62,976,671 63,045,860 RGD:1624291
G Lmna lamin A/C JBrowse link 2 187,842,884 187,863,552 RGD:1624291
G Map7 microtubule-associated protein 7 JBrowse link 1 15,620,665 15,748,203 RGD:1624291
G Pdcd6ip programmed cell death 6 interacting protein JBrowse link 8 121,916,233 121,973,145 RGD:1624291
G Prm1 protamine 1 JBrowse link 10 4,945,995 4,946,241 RGD:1624291
RGD:1600115
G Prm2 protamine 2 JBrowse link 10 4,950,484 4,950,920 RGD:1624291
RGD:13792537
G Vps4a vacuolar protein sorting 4 homolog A JBrowse link 19 39,230,050 39,243,298 RGD:1624291
G Vps4b vacuolar protein sorting 4 homolog B JBrowse link 13 26,825,261 26,850,460 RGD:1624291
RGD:1600115
G Wdr73 WD repeat domain 73 JBrowse link 1 142,711,955 142,720,292 RGD:1624291
RGD:1600115
G Zmpste24 zinc metallopeptidase STE24 JBrowse link 5 139,982,404 140,015,541 RGD:1624291
Cajal body organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fam118b family with sequence similarity 118, member B JBrowse link 8 36,416,769 36,467,609 RGD:1600115
G Uspl1 ubiquitin specific peptidase like 1 JBrowse link 12 6,930,018 6,957,027 RGD:1624291
RGD:1600115
G Wrap53 WD repeat containing, antisense to TP53 JBrowse link 10 56,169,024 56,185,800 RGD:1600115
RGD:1624291
G Zpr1 ZPR1 zinc finger JBrowse link 8 50,563,047 50,572,621 RGD:1624291
RGD:13792537
female pronucleus assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Wbp2nl WBP2 N-terminal like JBrowse link 7 123,531,657 123,548,574 RGD:1600115
G Wee2 WEE1 homolog 2 JBrowse link 4 68,604,770 68,631,341 RGD:1624291
RGD:1600115
male pronucleus assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Wbp2nl WBP2 N-terminal like JBrowse link 7 123,531,657 123,548,574 RGD:1600115
mitotic nuclear envelope reassembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ankle2 ankyrin repeat and LEM domain containing 2 JBrowse link 12 52,475,862 52,507,126 RGD:1600115
RGD:13792537
RGD:1624291
G Reep3 receptor accessory protein 3 JBrowse link 20 22,887,053 22,998,985 RGD:1624291
RGD:1600115
G Reep4 receptor accessory protein 4 JBrowse link 15 52,235,283 52,238,490 RGD:1624291
RGD:1600115
nuclear body organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Celf3 CUGBP, Elav-like family member 3 JBrowse link 2 195,716,373 195,732,872 RGD:1624291
RGD:1600115
G Sf1 splicing factor 1 JBrowse link 1 221,735,512 221,749,216 RGD:1624291
RGD:1600115
nuclear envelope disassembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Akap8l A-kinase anchoring protein 8 like JBrowse link 7 14,340,168 14,369,835 RGD:1624291
RGD:1600115
G Dctn1 dynactin subunit 1 JBrowse link 4 114,876,770 114,896,567 RGD:1624291
RGD:1600115
G Ndel1 nudE neurodevelopment protein 1-like 1 JBrowse link 10 55,398,919 55,456,654 RGD:8554736
G Pafah1b1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 JBrowse link 10 61,456,144 61,577,412 RGD:1624291
RGD:1600115
G Plk1 polo-like kinase 1 JBrowse link 1 192,115,990 192,125,969 RGD:1600115
RGD:1624291
nuclear envelope organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ctdnep1 CTD nuclear envelope phosphatase 1 JBrowse link 10 56,590,822 56,600,235 RGD:1624291
RGD:1600115
G Dmpk DM1 protein kinase JBrowse link 1 79,988,096 79,999,358 RGD:1624291
RGD:13792537
G Lemd2 LEM domain containing 2 JBrowse link 20 5,779,742 5,786,213 RGD:1624291
RGD:13792537
G Lemd3 LEM domain containing 3 JBrowse link 7 62,976,671 63,045,860 RGD:13792537
G Lmna lamin A/C JBrowse link 2 187,842,884 187,863,552 RGD:1624291
RGD:1600115
G LOC100911109 sperm-associated antigen 4 protein-like JBrowse link 3 152,143,573 152,148,051 RGD:13792537
G LOC108348120 LEM domain-containing protein 2-like JBrowse link 20 6,544,925 6,556,668 RGD:13792537
G Nup155 nucleoporin 155 JBrowse link 2 57,206,665 57,258,242 RGD:1624291
RGD:1600115
G Nup93 nucleoporin 93 JBrowse link 19 11,159,769 11,263,980 RGD:1624291
RGD:1600115
G Parp11 poly (ADP-ribose) polymerase family, member 11 JBrowse link 4 160,013,968 160,059,981 RGD:1624291
RGD:1600115
G Reep3 receptor accessory protein 3 JBrowse link 20 22,887,053 22,998,985 RGD:1624291
G Reep4 receptor accessory protein 4 JBrowse link 15 52,235,283 52,238,490 RGD:1624291
RGD:1600115
G Spag4 sperm associated antigen 4 JBrowse link 3 151,609,602 151,613,946 RGD:13792537
G Sun1 Sad1 and UNC84 domain containing 1 JBrowse link 12 17,488,482 17,533,334 RGD:1624291
RGD:13792537
G Sun2 Sad1 and UNC84 domain containing 2 JBrowse link 7 120,950,391 120,967,583 RGD:1624291
RGD:13792537
G Sun3 Sad1 and UNC84 domain containing 3 JBrowse link 14 89,215,386 89,253,585 RGD:13792537
G Sun5 Sad1 and UNC84 domain containing 5 JBrowse link 3 149,336,136 149,356,191 RGD:13792537
G Syne2 spectrin repeat containing nuclear envelope protein 2 JBrowse link 6 98,884,269 99,153,551 RGD:1624291
G Tmem170a transmembrane protein 170A JBrowse link 19 44,090,418 44,101,365 RGD:1624291
G Tmem201 transmembrane protein 201 JBrowse link 5 166,672,700 166,695,288 RGD:1624291
G Tor1a torsin family 1, member A JBrowse link 3 9,800,322 9,807,318 RGD:1624291
RGD:1600115
G Zmpste24 zinc metallopeptidase STE24 JBrowse link 5 139,982,404 140,015,541 RGD:1600115
RGD:1624291
nuclear envelope reassembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Chmp2a charged multivesicular body protein 2A JBrowse link 1 65,540,808 65,543,708 RGD:1624291
RGD:1600115
G Chmp4b charged multivesicular body protein 4B JBrowse link 3 150,188,275 150,227,453 RGD:1624291
G Chmp7 charged multivesicular body protein 7 JBrowse link 15 51,385,373 51,400,606 RGD:1624291
RGD:1600115
G Emd emerin JBrowse link X 156,452,847 156,455,858 RGD:1342448
G Nsfl1c NSFL1 cofactor JBrowse link 3 146,980,923 147,005,478 RGD:13792537
G Spast spastin JBrowse link 6 22,230,067 22,282,166 RGD:1624291
RGD:1600115
G Tmpo thymopoietin JBrowse link 7 31,847,412 31,872,416 RGD:634476
G Ubxn2a UBX domain protein 2A JBrowse link 6 28,969,471 28,997,987 RGD:13792537
G Ubxn2b UBX domain protein 2B JBrowse link 5 19,285,368 19,314,199 RGD:13792537
nuclear fragmentation involved in apoptotic nuclear change term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gper1 G protein-coupled estrogen receptor 1 JBrowse link 12 17,309,122 17,315,267 RGD:8553942
nuclear inner membrane organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tardbp TAR DNA binding protein JBrowse link 5 165,432,089 165,442,232 RGD:1624291
RGD:1600115
nuclear matrix anchoring at nuclear membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sun1 Sad1 and UNC84 domain containing 1 JBrowse link 12 17,488,482 17,533,334 RGD:1624291
RGD:1600115
G Sun2 Sad1 and UNC84 domain containing 2 JBrowse link 7 120,950,391 120,967,583 RGD:1624291
RGD:1600115
G Syne1 spectrin repeat containing nuclear envelope protein 1 JBrowse link 1
1
41,608,287
41,844,840
41,763,591
42,086,662
RGD:1624291
nuclear matrix organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tpr translocated promoter region, nuclear basket protein JBrowse link 13 67,611,685 67,672,833 RGD:1624291
RGD:1600115
nuclear membrane organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tmem43 transmembrane protein 43 JBrowse link 4 123,118,468 123,133,610 RGD:1624291
RGD:13792537
G Tor1a torsin family 1, member A JBrowse link 3 9,800,322 9,807,318 RGD:1600115
RGD:13792537
RGD:1624291
G Tor1aip1 torsin 1A interacting protein 1 JBrowse link 13 73,670,649 73,704,668 RGD:1624291
RGD:1600115
G Tor1b torsin family 1, member B JBrowse link 3 9,792,818 9,798,924 RGD:1624291
RGD:1600115
nuclear pore complex assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ahctf1 AT hook containing transcription factor 1 JBrowse link 13 98,023,528 98,079,138 RGD:1624291
RGD:1600115
G Ndc1 NDC1 transmembrane nucleoporin JBrowse link 5 126,976,636 127,022,941 RGD:1600115
RGD:1624291
G Nup107 nucleoporin 107 JBrowse link 7 60,781,724 60,825,225 RGD:1600115
RGD:1624291
G Nup153 nucleoporin 153 JBrowse link 17 18,358,712 18,411,368 RGD:1600115
RGD:1624291
G Nup205 nucleoporin 205 JBrowse link 4 62,703,779 62,773,931 RGD:1624291
RGD:1600115
G Nup93 nucleoporin 93 JBrowse link 19 11,159,769 11,263,980 RGD:1600115
RGD:1624291
G Nup98 nucleoporin 98 JBrowse link 1 167,213,866 167,308,851 RGD:1624291
RGD:1600115
G Rtn4 reticulon 4 JBrowse link 14 114,126,931 114,174,459 RGD:1600115
RGD:1624291
G Tmem170a transmembrane protein 170A JBrowse link 19 44,090,418 44,101,365 RGD:1624291
G Tpr translocated promoter region, nuclear basket protein JBrowse link 13 67,611,685 67,672,833 RGD:8553300
RGD:1624291
nuclear pore distribution term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ndc1 NDC1 transmembrane nucleoporin JBrowse link 5 126,976,636 127,022,941 RGD:1600115
RGD:1624291
G Nup133 nucleoporin 133 JBrowse link 19 56,681,965 56,731,404 RGD:13792537
nuclear pore organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ndc1 NDC1 transmembrane nucleoporin JBrowse link 5 126,976,636 127,022,941 RGD:13792537
G Nup133 nucleoporin 133 JBrowse link 19 56,681,965 56,731,404 RGD:1624291
RGD:1600115
G Nup205 nucleoporin 205 JBrowse link 4 62,703,779 62,773,931 RGD:13792537
G Nup35 nucleoporin 35 JBrowse link 3 67,866,784 67,896,828 RGD:13792537
G Nup54 nucleoporin 54 JBrowse link 14 17,123,434 17,141,832 RGD:13792537
G Pom121 POM121 transmembrane nucleoporin JBrowse link 12 24,316,575 24,341,943 RGD:729484
G Seh1l SEH1-like nucleoporin JBrowse link 18 63,545,150 63,568,101 RGD:1624291
G Tpr translocated promoter region, nuclear basket protein JBrowse link 13 67,611,685 67,672,833 RGD:1624291
RGD:1600115
nuclear speck organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aff2 AF4/FMR2 family, member 2 JBrowse link X 153,539,951 154,051,022 RGD:1624291
RGD:1600115
G Dyrk3 dual specificity tyrosine phosphorylation regulated kinase 3 JBrowse link 13 47,906,230 47,916,877 RGD:1600115
RGD:1624291
G LOC103690302 AF4/FMR2 family member 2 RGD:1600115
G Srpk2 SRSF protein kinase 2 JBrowse link 4 7,994,025 8,187,455 RGD:1624291
nucleolar fragmentation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Zfp354a zinc finger protein 354A JBrowse link 10 36,586,495 36,600,172 RGD:1303369
nucleologenesis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Emg1 EMG1 N1-specific pseudouridine methyltransferase JBrowse link 4 157,222,366 157,230,647 RGD:1624291
RGD:1600115
G Polr1b RNA polymerase I subunit B JBrowse link 3 121,632,043 121,656,506 RGD:1624291
RGD:1600115
nucleolus organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nolc1 nucleolar and coiled-body phosphoprotein 1 JBrowse link 1 265,829,055 265,839,819 RGD:1624291
RGD:1600115
G Pes1 pescadillo ribosomal biogenesis factor 1 JBrowse link 14 84,211,600 84,227,980 RGD:1624291
RGD:1600115
G Rps19 ribosomal protein S19 JBrowse link 1 81,750,873 81,756,629 RGD:1624291
G Rrn3 RRN3 homolog, RNA polymerase I transcription factor JBrowse link 10 3,170,387 3,214,648 RGD:1624291
RGD:1600115
G Usp36 ubiquitin specific peptidase 36 JBrowse link 10 107,292,828 107,324,355 RGD:1600115
RGD:1624291
PML body organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Daxx death-domain associated protein JBrowse link 20 5,480,103 5,485,962 RGD:9587773
G Ets1 ETS proto-oncogene 1, transcription factor JBrowse link 8 33,756,634 33,879,625 RGD:1624291
RGD:1600115
G Habp4 hyaluronan binding protein 4 JBrowse link 17 1,679,561 1,702,245 RGD:1600115
RGD:1624291
G Pml promyelocytic leukemia JBrowse link 8 63,002,515 63,034,310 RGD:1624291
RGD:13792537
G Serbp1 Serpine1 mRNA binding protein 1 JBrowse link 4 98,027,563 98,044,717 RGD:1600115
RGD:1624291
G Sumo1 small ubiquitin-like modifier 1 JBrowse link 9 66,453,428 66,483,614 RGD:1624291
regulation of nucleus organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nfe2l1 nuclear factor, erythroid 2-like 1 JBrowse link 10 84,686,762 84,699,313 RGD:1600115
RGD:1624291
G Syne1 spectrin repeat containing nuclear envelope protein 1 JBrowse link 1
1
41,608,287
41,844,840
41,763,591
42,086,662
RGD:13209017
sperm chromatin condensation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fshr follicle stimulating hormone receptor JBrowse link 6 12,796,383 12,997,817 RGD:1624291
G H1fnt H1 histone family, member N, testis-specific JBrowse link 7 139,871,491 139,872,858 RGD:1624291
RGD:1600115
G Selenof selenoprotein F JBrowse link 2 250,600,823 250,633,903 RGD:728803
G Sycp1 synaptonemal complex protein 1 JBrowse link 2 205,274,766 205,426,869 RGD:1624291
RGD:1600115
G Sycp3 synaptonemal complex protein 3 JBrowse link 7 29,029,887 29,044,344 RGD:1624291
G Tssk6 testis-specific serine kinase 6 JBrowse link 16 21,272,282 21,274,756 RGD:1624291
RGD:1600115
spermatid nucleus differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Agfg1 ArfGAP with FG repeats 1 JBrowse link 9 88,607,508 88,663,486 RGD:1624291
RGD:1600115
G Gopc golgi associated PDZ and coiled-coil motif containing JBrowse link 20 33,471,355 33,521,281 RGD:1624291
G Hmgb2 high mobility group box 2 JBrowse link 16 36,077,615 36,080,191 RGD:1624291
G Mfsd14a major facilitator superfamily domain containing 14A JBrowse link 2 219,661,204 219,697,548 RGD:1624291
G Nectin2 nectin cell adhesion molecule 2 JBrowse link 1 80,631,449 80,666,617 RGD:1624291
RGD:1600115
G Pygo1 pygopus family PHD finger 1 JBrowse link 8 79,607,013 79,625,188 RGD:1624291
RGD:13792537
G Pygo2 pygopus family PHD finger 2 JBrowse link 2 188,757,167 188,762,285 RGD:1624291
RGD:13792537
G Tbpl1 TATA-box binding protein like 1 JBrowse link 1 23,977,154 24,002,512 RGD:1624291
RGD:1600115
G Tmf1 TATA element modulatory factor 1 JBrowse link 4 129,521,986 129,546,024 RGD:1624291
RGD:1600115
spermatid nucleus elongation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dmrtc2 DMRT-like family C2 JBrowse link 1 81,734,256 81,741,419 RGD:1624291
G H1fnt H1 histone family, member N, testis-specific JBrowse link 7 139,871,491 139,872,858 RGD:1624291
RGD:1600115
G Ift88 intraflagellar transport 88 JBrowse link 15 37,690,417 37,786,855 RGD:1624291
G Kdm3a lysine demethylase 3A JBrowse link 4 99,503,160 99,547,315 RGD:1624291
RGD:1600115
G Tnp1 transition protein 1 JBrowse link 9 80,294,837 80,295,446 RGD:1624291
RGD:13792537
RGD:1600115
spermatogenesis, exchange of chromosomal proteins term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Chd5 chromodomain helicase DNA binding protein 5 JBrowse link 5 169,519,212 169,572,059 RGD:1624291
RGD:1600115
G Fshr follicle stimulating hormone receptor JBrowse link 6 12,796,383 12,997,817 RGD:1624291
RGD:1600115
G Hist1h2ba histone cluster 1 H2B family member a JBrowse link 17 43,423,111 43,423,580 RGD:1624291
RGD:1600115
G Piwil1 piwi-like RNA-mediated gene silencing 1 JBrowse link 12 31,608,641 31,629,961 RGD:1624291
RGD:1600115
G Psme4 proteasome activator subunit 4 JBrowse link 14 115,166,165 115,269,041 RGD:1624291
RGD:13792537
G Rnf8 ring finger protein 8 JBrowse link 20 8,285,380 8,309,858 RGD:1624291
RGD:1600115
G Sycp3 synaptonemal complex protein 3 JBrowse link 7 29,029,887 29,044,344 RGD:1624291
RGD:1600115
G Tnp1 transition protein 1 JBrowse link 9 80,294,837 80,295,446 RGD:1600115
RGD:1624291
G Tnp2 transition protein 2 JBrowse link 10 4,953,898 4,954,626 RGD:1600115
RGD:1624291

Term paths to the root
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Term Annotations click to browse term
  biological_process 17926
    cellular component organization or biogenesis 6227
      cellular component organization 6054
        organelle organization 3647
          nucleus organization 128
            female pronucleus assembly 2
            karyogamy + 0
            macronucleus organization 0
            male pronucleus assembly + 1
            micronucleus organization 0
            nuclear body organization + 16
            nuclear envelope organization + 42
            nuclear matrix organization + 4
            nuclear pore distribution 2
            nuclear pore organization + 15
            nucleolus organization + 8
            nucleus disassembly 0
            nucleus inheritance 0
            regulation of nucleus organization + 2
            spermatid nucleus differentiation + 25
            spermatid nucleus elongation 5
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.