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ONTOLOGY REPORT - ANNOTATIONS


Term:cytoplasm organization
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Accession:GO:0007028 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the cytoplasm. The cytoplasm is all of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
Synonyms:exact_synonym: cytoplasm organisation
 related_synonym: cytoplasm organization and biogenesis


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cytoplasm organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kif5b kinesin family member 5B ISO MGI:MGI:2159694 (MGI:MGI:1270012|PMID:9657148) RGD PMID:9657148 MGI:MGI:1270012 NCBI chr17:54,181,416...54,219,048
Ensembl chr17:54,181,419...54,212,096
JBrowse link
G Padi6 peptidyl arginine deiminase 6 ISO MGI:MGI:3806009 (MGI:MGI:3805420|PMID:18599511) RGD PMID:18599511 MGI:MGI:3805420 NCBI chr 5:159,241,276...159,256,749
Ensembl chr 5:159,241,413...159,256,699
JBrowse link
G Rrn3 RRN3 homolog, RNA polymerase I transcription factor ISO MGI:MGI:3584037 (MGI:MGI:3583493|PMID:15989966) RGD PMID:15989966 MGI:MGI:3583493 NCBI chr10:3,170,387...3,214,648
Ensembl chr10:3,170,742...3,214,655
JBrowse link
G Tfcp2l1 transcription factor CP2-like 1 ISO MGI:MGI:3707684 (MGI:MGI:3703120|PMID:17079272) RGD PMID:17079272 MGI:MGI:3703120 NCBI chr13:34,610,689...34,671,617
Ensembl chr13:34,610,684...34,670,124
JBrowse link
P granule organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pld6 phospholipase D family, member 6 ISO (MGI:MGI:4943609|PMID:21397848) RGD PMID:21397848 MGI:MGI:4943609 NCBI chr10:46,142,313...46,145,774
Ensembl chr10:46,142,801...46,145,548
JBrowse link
G Tdrd5 tudor domain containing 5 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:4946318|PMID:21383078)
Ensembl
UniProt
RGD
PMID:21383078 GO_REF:0000024, GO_REF:0000107, MGI:MGI:4946318 NCBI chr13:73,872,637...73,922,640
Ensembl chr13:73,872,621...73,921,969
JBrowse link
pole plasm assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100911453 methylosome protein 50-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:208,420,223...208,430,276
Ensembl chr 2:208,420,309...208,587,260
Ensembl chr 2:208,420,309...208,587,260
JBrowse link
G Wdr77 WD repeat domain 77 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:208,577,292...208,587,263
Ensembl chr 2:208,420,309...208,587,260
JBrowse link
vitellogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Etv6 ETS variant transcription factor 6 ISO MGI:MGI:2177950 (MGI:MGI:1095693|PMID:9250681) RGD PMID:9250681 MGI:MGI:1095693 NCBI chr 4:167,754,684...167,992,370
Ensembl chr 4:167,754,525...167,992,168
JBrowse link
G Fosl1 FOS like 1, AP-1 transcription factor subunit ISO MGI:MGI:2385824 (MGI:MGI:1926238|PMID:11044407) RGD PMID:11044407 MGI:MGI:1926238 NCBI chr 1:220,826,560...220,835,066
Ensembl chr 1:220,826,560...220,835,066
JBrowse link
G Sos1 SOS Ras/Rac guanine nucleotide exchange factor 1 ISO MGI:MGI:2155441 (MGI:MGI:85697|PMID:9030684) RGD PMID:9030684 MGI:MGI:85697 NCBI chr 6:3,105,443...3,182,977
Ensembl chr 6:3,104,861...3,182,996
JBrowse link
G Zmiz1 zinc finger, MIZ-type containing 1 ISO MGI:MGI:3769389 (MGI:MGI:3768282|PMID:17967885) RGD PMID:17967885 MGI:MGI:3768282 NCBI chr16:1,749,191...1,954,633
Ensembl chr16:1,749,191...1,954,614
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20017
    cellular process 18791
      cellular component organization or biogenesis 6765
        cellular component organization 6509
          cytoplasm organization 12
            pole plasm assembly + 4
            vitellogenesis + 4
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.