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ONTOLOGY REPORT - ANNOTATIONS


Term:endoplasmic reticulum organization
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Accession:GO:0007029 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the endoplasmic reticulum.
Synonyms:exact_synonym: ER organisation;   endoplasmic reticulum organisation
 related_synonym: ER organization and biogenesis;   endoplasmic reticulum morphology;   endoplasmic reticulum organization and biogenesis


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endoplasmic reticulum organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atl1 atlastin GTPase 1 JBrowse link 6 92,229,764 92,370,428 RGD:1624291
RGD:13792537
RGD:1600115
G Atl2 atlastin GTPase 2 JBrowse link 6 2,568,975 2,610,432 RGD:1624291
RGD:13792537
G Atl3 atlastin GTPase 3 JBrowse link 1 222,746,023 222,788,439 RGD:1600115
RGD:13792537
RGD:1624291
G Bnip1 BCL2 interacting protein 1 JBrowse link 10 16,677,077 16,689,321 RGD:1624291
RGD:1600115
G Cacna1s calcium voltage-gated channel subunit alpha1 S JBrowse link 13 52,889,570 52,964,558 RGD:1624291
G Casq1 calsequestrin 1 JBrowse link 13 90,592,676 90,602,365 RGD:1624291
G Cav2 caveolin 2 JBrowse link 4 44,573,264 44,580,640 RGD:1624291
RGD:1600115
G Ccdc47 coiled-coil domain containing 47 JBrowse link 10 94,388,425 94,406,949 RGD:1624291
G Cert1 ceramide transporter 1 JBrowse link 2 27,365,145 27,469,797 RGD:1624291
G Dnm1l dynamin 1-like JBrowse link 11 88,830,968 88,882,271 RGD:1624291
G Eif2ak3 eukaryotic translation initiation factor 2 alpha kinase 3 JBrowse link 4 98,648,513 98,709,695 RGD:1624291
G Gak cyclin G associated kinase JBrowse link 14 2,100,104 2,174,332 RGD:1624291
G Htt huntingtin JBrowse link 14 81,105,139 81,254,637 RGD:1624291
G Jagn1 jagunal homolog 1 JBrowse link 4 145,399,885 145,404,605 RGD:1600115
G Lman1 lectin, mannose-binding, 1 JBrowse link 18 61,683,377 61,707,344 RGD:1624291
RGD:1600115
RGD:13792537
G Lman1l lectin, mannose-binding, 1 like JBrowse link 8 62,386,806 62,400,370 RGD:13792537
G Lman2 lectin, mannose-binding 2 JBrowse link 17 9,798,136 9,815,820 RGD:13792537
G Lman2l lectin, mannose-binding 2-like JBrowse link 9 43,020,940 43,023,015 RGD:13792537
G Lnpk lunapark, ER junction formation factor JBrowse link 3 61,432,128 61,494,828 RGD:1624291
G Lrrk2 leucine-rich repeat kinase 2 JBrowse link 7 132,857,311 133,018,549 RGD:1624291
RGD:13792537
G Mapk15 mitogen-activated protein kinase 15 JBrowse link 7 117,041,287 117,061,799 RGD:1624291
RGD:1600115
G Mia3 MIA SH3 domain ER export factor 3 JBrowse link 13 101,727,434 101,770,127 RGD:1624291
G Pex5 peroxisomal biogenesis factor 5 JBrowse link 4 156,983,914 157,009,675 RGD:1624291
G Rnf112 ring finger protein 112 JBrowse link 10 47,719,034 47,726,050 RGD:13792537
G Rtn4 reticulon 4 JBrowse link 14 114,126,931 114,174,459 RGD:1624291
G Sec16a SEC16 homolog A, endoplasmic reticulum export factor JBrowse link 3 3,856,218 3,890,785 RGD:1624291
RGD:13792537
G Sec16b SEC16 homolog B, endoplasmic reticulum export factor JBrowse link 13 75,153,074 75,216,941 RGD:1624291
RGD:13792537
G Sec31a SEC31 homolog A, COPII coat complex component JBrowse link 14 10,854,713 10,909,579 RGD:13792537
G Sec31b SEC31 homolog B, COPII coat complex component JBrowse link 1 264,266,279 264,294,687 RGD:13792537
G Sec61a1 SEC61 translocon subunit alpha 1 JBrowse link 4 120,453,577 120,467,932 RGD:1624291
G Smpd4 sphingomyelin phosphodiesterase 4 JBrowse link 11 87,522,971 87,546,687 RGD:1624291
G Sptssb serine palmitoyltransferase, small subunit B JBrowse link 2 166,654,036 166,682,325 RGD:1624291
RGD:13792537
G Tmcc1 transmembrane and coiled-coil domain family 1 JBrowse link 4 147,920,987 148,048,852 RGD:1624291
G Tmem38a transmembrane protein 38a JBrowse link 16 18,960,197 18,974,942 RGD:1624291
RGD:1600115
G Tmem38b transmembrane protein 38B JBrowse link 5 70,639,156 70,675,055 RGD:1624291
G Tor1aip2 torsin 1A interacting protein 2 JBrowse link 13 73,704,088 73,735,339 RGD:1624291
RGD:1600115
G Tor1b torsin family 1, member B JBrowse link 3 9,792,818 9,798,924 RGD:1624291
G Umod uromodulin JBrowse link 1 189,186,027 189,199,939 RGD:1624291
G Use1 unconventional SNARE in the ER 1 JBrowse link 16 19,762,202 19,765,781 RGD:1624291
G Vapa VAMP associated protein A JBrowse link 9 113,300,831 113,331,872 RGD:1624291
G Vapb VAMP associated protein B and C JBrowse link 3 171,832,558 171,871,042 RGD:1624291
endoplasmic reticulum localization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Myo5a myosin VA JBrowse link 8 82,038,966 82,156,507 RGD:1624291
endoplasmic reticulum membrane fusion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bnip1 BCL2 interacting protein 1 JBrowse link 10 16,677,077 16,689,321 RGD:1624291
RGD:1600115
G Vcpip1 valosin containing protein interacting protein 1 JBrowse link 5 9,231,180 9,257,821 RGD:1299500
RGD:13792537
endoplasmic reticulum membrane organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lpcat3 lysophosphatidylcholine acyltransferase 3 JBrowse link 4 157,181,722 157,222,997 RGD:1600115
RGD:1624291
G Mospd3 motile sperm domain containing 3 JBrowse link 12 22,164,978 22,169,251 RGD:13792537
G Stx18 syntaxin 18 JBrowse link 14 77,402,952 77,492,910 RGD:1624291
G Tmed2 transmembrane p24 trafficking protein 2 JBrowse link 12 37,471,259 37,480,344 RGD:1624291
G Trdn triadin JBrowse link 1 25,403,390 25,787,664 RGD:7327226
G Vapb VAMP associated protein B and C JBrowse link 3 171,832,558 171,871,042 RGD:13792537
endoplasmic reticulum polarization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Shtn1 shootin 1 JBrowse link 1 280,129,228 280,233,873 RGD:1600115
RGD:1624291
endoplasmic reticulum tubular network formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arl6ip1 ADP-ribosylation factor like GTPase 6 interacting protein 1 JBrowse link 1 187,770,160 187,779,675 RGD:1624291
G Rtn3 reticulon 3 JBrowse link 1 222,677,359 222,734,307 RGD:1624291
G Rtn4 reticulon 4 JBrowse link 14 114,126,931 114,174,459 RGD:1600115
RGD:1624291
G Zfyve27 zinc finger FYVE-type containing 27 JBrowse link 1 261,415,172 261,438,539 RGD:1600115
RGD:13792537
RGD:1624291
endoplasmic reticulum tubular network maintenance term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lnpk lunapark, ER junction formation factor JBrowse link 3 61,432,128 61,494,828 RGD:1624291
endoplasmic reticulum tubular network membrane organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arl6ip1 ADP-ribosylation factor like GTPase 6 interacting protein 1 JBrowse link 1 187,770,160 187,779,675 RGD:1624291
G Atl1 atlastin GTPase 1 JBrowse link 6 92,229,764 92,370,428 RGD:1624291
RGD:1600115
G Atl2 atlastin GTPase 2 JBrowse link 6 2,568,975 2,610,432 RGD:1624291
G Rtn4 reticulon 4 JBrowse link 14 114,126,931 114,174,459 RGD:1600115
RGD:1624291
endoplasmic reticulum tubular network organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lnpk lunapark, ER junction formation factor JBrowse link 3 61,432,128 61,494,828 RGD:13792537
G Rab10 RAB10, member RAS oncogene family JBrowse link 6 27,668,387 27,721,120 RGD:1600115
RGD:1624291
G Rab18 RAB18, member RAS oncogene family JBrowse link 17 59,844,781 59,876,170 RGD:1624291
G Reep1 receptor accessory protein 1 JBrowse link 4 99,618,622 99,735,329 RGD:1624291
RGD:13792537
G Reep2 receptor accessory protein 2 JBrowse link 18 27,632,562 27,641,594 RGD:1624291
RGD:13792537
G Reep3 receptor accessory protein 3 JBrowse link 20 22,887,053 22,998,985 RGD:13792537
G Reep4 receptor accessory protein 4 JBrowse link 15 52,235,283 52,238,490 RGD:13792537
G Rtn3 reticulon 3 JBrowse link 1 222,677,359 222,734,307 RGD:1624291
G Rtn4 reticulon 4 JBrowse link 14 114,126,931 114,174,459 RGD:1600115
RGD:1624291
G Tmem170a transmembrane protein 170A JBrowse link 19 44,090,418 44,101,365 RGD:1624291
G Tmem33 transmembrane protein 33 JBrowse link 14 42,537,352 42,559,580 RGD:13792537
G Use1 unconventional SNARE in the ER 1 JBrowse link 16 19,762,202 19,765,781 RGD:1624291
endoplasmic reticulum-plasma membrane tethering term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Esyt1 extended synaptotagmin 1 JBrowse link 7 2,924,216 2,941,213 RGD:1600115
G Esyt2 extended synaptotagmin 2 JBrowse link 6 144,156,021 144,248,374 RGD:1600115
G Esyt3 extended synaptotagmin 3 JBrowse link 8 107,555,417 107,602,414 RGD:1600115
G Gramd2a GRAM domain containing 2A JBrowse link 8 64,503,058 64,539,149 RGD:1624291
RGD:13792537
G Mospd3 motile sperm domain containing 3 JBrowse link 12 22,164,978 22,169,251 RGD:13792537
G Vapb VAMP associated protein B and C JBrowse link 3 171,832,558 171,871,042 RGD:13792537
establishment of endoplasmic reticulum localization to postsynapse term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Myo5a myosin VA JBrowse link 8 82,038,966 82,156,507 RGD:1600115
RGD:1624291
maintenance of ER location term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Polr2m RNA polymerase II subunit M JBrowse link 8 77,985,190 77,992,621 RGD:1624291
positive regulation of endoplasmic reticulum tubular network organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atl3 atlastin GTPase 3 JBrowse link 1 222,746,023 222,788,439 RGD:1600115
RGD:1624291
G Lnpk lunapark, ER junction formation factor JBrowse link 3 61,432,128 61,494,828 RGD:1624291
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 JBrowse link 13 44,578,208 44,649,876 RGD:1600115
RGD:1624291
G Rab3gap2 RAB3 GTPase activating non-catalytic protein subunit 2 JBrowse link 13 103,157,806 103,229,010 RGD:1600115
RGD:1624291
protein insertion into ER membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Get4 guided entry of tail-anchored proteins factor 4 JBrowse link 12 17,469,112 17,486,709 RGD:13792537
G Tram2 translocation associated membrane protein 2 JBrowse link 9 27,117,861 27,192,166 RGD:1624291
regulation of endoplasmic reticulum tubular network organization term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arl6ip1 ADP-ribosylation factor like GTPase 6 interacting protein 1 JBrowse link 1 187,770,160 187,779,675 RGD:1624291
G Tmem33 transmembrane protein 33 JBrowse link 14 42,537,352 42,559,580 RGD:1600115
RGD:1624291
tail-anchored membrane protein insertion into ER membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bag6 BAG cochaperone 6 JBrowse link 20 5,124,512 5,138,084 RGD:1600115
RGD:1624291
G Get1 guided entry of tail-anchored proteins factor 1 JBrowse link 11 36,497,513 36,511,445 RGD:13792537
G Get3 guided entry of tail-anchored proteins factor 3, ATPase JBrowse link 19 26,133,024 26,142,637 RGD:1624291
G Get4 guided entry of tail-anchored proteins factor 4 JBrowse link 12 17,469,112 17,486,709 RGD:1624291
G Sgta small glutamine rich tetratricopeptide repeat containing alpha JBrowse link 7 11,521,949 11,538,691 RGD:1600115
RGD:1624291
G Ubl4a ubiquitin-like 4A JBrowse link X 156,340,919 156,343,771 RGD:1600115
RGD:1624291

Term paths to the root
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Term Annotations click to browse term
  biological_process 19678
    cellular process 18452
      cellular component organization or biogenesis 6667
        cellular component organization 6427
          endomembrane system organization 433
            endoplasmic reticulum organization 74
              endoplasmic reticulum cisternal network organization + 0
              endoplasmic reticulum disassembly 0
              endoplasmic reticulum inheritance 0
              endoplasmic reticulum localization + 8
              endoplasmic reticulum membrane fusion 2
              endoplasmic reticulum membrane organization + 6
              endoplasmic reticulum polarization + 1
              endoplasmic reticulum tubular network organization + 19
              protein insertion into ER membrane + 7
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.