Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:endosome organization
go back to main search page
Accession:GO:0007032 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of endosomes.
Synonyms:exact_synonym: endosome organisation
 related_synonym: endosome organization and biogenesis


show annotations for term's descendants           Sort by:
 
endosome organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aktip AKT interacting protein ISO
ISS
(PMID:18799622)
GO_REF:0000024
RGD
UniProt
PMID:18799622 GO_REF:0000024 NCBI chr19:17,290,048...17,300,054
Ensembl chr19:17,290,178...17,300,050
JBrowse link
G Als2 alsin Rho guanine nucleotide exchange factor ALS2 ISO UniProtKB:Q60I27 (PMID:17239822) RGD PMID:17239822 NCBI chr 9:65,961,361...66,034,396
Ensembl chr 9:65,961,346...66,033,871
JBrowse link
G Als2cl ALS2 C-terminal like ISO UniProtKB:Q96Q42 (PMID:17239822) RGD PMID:17239822 NCBI chr 8:119,156,081...119,176,680
Ensembl chr 8:119,160,731...119,174,830
JBrowse link
G Anxa8 annexin A8 ISO
IBA
(PMID:18923148)
PMID:21873635
RGD PMID:18923148, PMID:21873635 RGD:13792537 NCBI chr16:10,417,174...10,432,388
Ensembl chr16:10,417,185...10,432,393
JBrowse link
G Arfgef2 ADP ribosylation factor guanine nucleotide exchange factor 2 ISO
ISS
(PMID:20360857)
GO_REF:0000024
RGD
UniProt
PMID:20360857 GO_REF:0000024 NCBI chr 3:163,570,435...163,656,612
Ensembl chr 3:163,570,532...163,656,626
JBrowse link
G Chmp2b charged multivesicular body protein 2B ISO (PMID:16041373) RGD PMID:16041373 NCBI chr11:2,666,405...2,692,213
Ensembl chr11:2,665,285...2,692,198
JBrowse link
G Dnajc13 DnaJ heat shock protein family (Hsp40) member C13 ISO (PMID:24643499) RGD PMID:24643499 NCBI chr 8:112,697,907...112,830,445
Ensembl chr 8:112,698,348...112,807,598
JBrowse link
G Dnm1 dynamin 1 ISO (PMID:19706678) RGD PMID:19706678 NCBI chr 3:11,338,081...11,382,043
Ensembl chr 3:11,338,083...11,382,043
JBrowse link
G Exoc8 exocyst complex component 8 ISO (PMID:24344185) RGD PMID:24344185 NCBI chr19:57,647,305...57,649,794
Ensembl chr19:57,647,291...57,649,827
JBrowse link
G Fam160a2 family with sequence similarity 160, member A2 ISO
ISS
(PMID:18799622)
GO_REF:0000024
RGD
UniProt
PMID:18799622 GO_REF:0000024 NCBI chr 1:170,216,505...170,238,898
Ensembl chr 1:170,212,817...170,238,890
JBrowse link
G Hook1 hook microtubule-tethering protein 1 ISO (PMID:18799622) RGD PMID:18799622 NCBI chr 5:114,940,053...115,000,691
Ensembl chr 5:114,940,053...115,000,691
JBrowse link
G Hook2 hook microtubule-tethering protein 2 ISO (PMID:18799622) RGD PMID:18799622 NCBI chr19:26,106,713...26,119,353
Ensembl chr19:26,106,838...26,119,352
JBrowse link
G Hook3 hook microtubule-tethering protein 3 ISO (PMID:18799622) RGD PMID:18799622 NCBI chr16:70,710,347...70,818,789 JBrowse link
G Lamtor1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 ISO
ISS
(MGI:MGI:4887551|PMID:19177150)
GO_REF:0000024
RGD
UniProt
PMID:19177150 GO_REF:0000024, MGI:MGI:4887551 NCBI chr 1:166,991,474...166,997,045
Ensembl chr 1:166,991,474...166,997,045
JBrowse link
G Laptm4b lysosomal protein transmembrane 4 beta ISO
ISS
(PMID:21224396)
GO_REF:0000024
RGD
UniProt
PMID:21224396 GO_REF:0000024 NCBI chr 7:72,924,911...72,968,099
Ensembl chr 7:72,924,799...72,968,101
JBrowse link
G LOC100361543 RhoA activator C11orf59-like ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr  X:37,261,428...37,262,470
Ensembl chr 1:166,991,474...166,997,045
JBrowse link
G Pheta1 PH domain containing endocytic trafficking adaptor 1 ISO
IBA
(PMID:21233288)
PMID:21873635
RGD PMID:21233288, PMID:21873635 RGD:13792537 NCBI chr12:40,225,316...40,230,573
Ensembl chr12:40,226,593...40,227,297
JBrowse link
G Pheta2 PH domain containing endocytic trafficking adaptor 2 ISO
IBA
(PMID:21233288)
PMID:21873635
RGD PMID:21233288, PMID:21873635 RGD:13792537 NCBI chr 7:123,572,153...123,578,590
Ensembl chr 7:123,573,930...123,578,551
JBrowse link
G Pi4k2a phosphatidylinositol 4-kinase type 2 alpha IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:261,337,594...261,362,509
Ensembl chr 1:261,337,594...261,362,509
JBrowse link
G Pi4k2b phosphatidylinositol 4-kinase type 2 beta IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:60,567,968...60,594,821
Ensembl chr14:60,567,967...60,594,844
JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 IMP RGD PMID:12453151 RGD:2303129 NCBI chr18:22,964,121...23,047,896
Ensembl chr18:22,964,210...23,047,895
JBrowse link
G Plekhf1 pleckstrin homology and FYVE domain containing 1 ISO (PMID:22115783) RGD PMID:22115783 NCBI chr 1:94,609,041...94,616,565
Ensembl chr 1:94,609,377...94,610,854
JBrowse link
G Plekhj1 pleckstrin homology domain containing J1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:11,784,314...11,786,476
Ensembl chr 7:11,784,341...11,786,475
JBrowse link
G Rab22a RAB22A, member RAS oncogene family ISO (PMID:11870209) RGD PMID:11870209 NCBI chr 3:171,743,884...171,790,558
Ensembl chr 3:171,743,929...171,790,558
JBrowse link
G Rab5a RAB5A, member RAS oncogene family IMP PMID:8043272 ParkinsonsUK-UCL PMID:8043272 RGD:2306269 NCBI chr 9:5,910...6,065 JBrowse link
G Rab5al1 Rab5a, member RAS oncogene family-like 1 IMP PMID:8043272 ParkinsonsUK-UCL PMID:8043272 RGD:2306269 NCBI chr14:72,889,022...72,891,156 JBrowse link
G Rab5b RAB5B, member RAS oncogene family ISO (MGI:MGI:73737|PMID:7789520) RGD PMID:7789520 MGI:MGI:73737 NCBI chr 7:3,104,530...3,123,384
Ensembl chr 7:3,104,551...3,123,297
JBrowse link
G Rab5c RAB5C, member RAS oncogene family ISO (MGI:MGI:73737|PMID:7789520) RGD PMID:7789520 MGI:MGI:73737 NCBI chr10:88,621,924...88,645,364
Ensembl chr10:88,621,925...88,645,364
JBrowse link
G Rnf26 ring finger protein 26 ISO (PMID:27368102) RGD PMID:27368102 NCBI chr 8:48,447,113...48,449,311
Ensembl chr 8:48,447,113...48,449,311
JBrowse link
G Snx10 sorting nexin 10 ISO (PMID:17012226) RGD PMID:17012226 NCBI chr 4:81,311,490...81,375,248
Ensembl chr 4:81,311,490...81,374,158
JBrowse link
G Snx33 sorting nexin 33 ISO (PMID:21048941) RGD PMID:21048941 NCBI chr 8:61,584,656...61,596,055
Ensembl chr 8:61,584,656...61,595,032
JBrowse link
G Sqstm1 sequestosome 1 ISO
IBA
ISS
(PMID:27368102)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:27368102, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr10:35,704,728...35,716,316
Ensembl chr10:35,704,730...35,716,294
JBrowse link
G Stx6 syntaxin 6 ISO (MGI:MGI:3042340|PMID:14668490) RGD PMID:14668490 MGI:MGI:3042340 NCBI chr13:72,804,218...72,850,757
Ensembl chr13:72,804,218...72,852,967
JBrowse link
G Tmem127 transmembrane protein 127 ISO MGI:MGI:5581337 (MGI:MGI:5565633|PMID:24334765) RGD PMID:24334765 MGI:MGI:5565633 NCBI chr 3:119,677,575...119,690,371
Ensembl chr 3:119,677,575...119,690,366
JBrowse link
G Usp50 ubiquitin specific peptidase 50 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:119,225,055...119,247,442
Ensembl chr 3:119,224,943...119,247,449
JBrowse link
G Usp8 ubiquitin specific peptidase 8 ISO
IBA
(PMID:16520378)
PMID:21873635
(MGI:MGI:4821940|PMID:16771824)
RGD PMID:16520378, PMID:16771824, PMID:21873635 MGI:MGI:4821940, RGD:13792537 NCBI chr 3:119,173,818...119,222,499
Ensembl chr 3:119,173,818...119,222,484
JBrowse link
G Vps11 VPS11 core subunit of CORVET and HOPS complexes IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:48,677,492...48,692,295
Ensembl chr 8:48,677,492...48,692,295
JBrowse link
G Vps18 VPS18 core subunit of CORVET and HOPS complexes ISO
IBA
(MGI:MGI:3042340|PMID:14668490)
PMID:21873635
(PMID:18799622)
RGD PMID:14668490, PMID:18799622, PMID:21873635 MGI:MGI:3042340, RGD:13792537 NCBI chr 3:111,097,352...111,108,206
Ensembl chr 3:111,097,326...111,108,295
JBrowse link
G Vps33b VPS33B, late endosome and lysosome associated ISO (PMID:23918659) RGD PMID:23918659 NCBI chr 1:142,060,955...142,083,955
Ensembl chr 1:142,060,955...142,083,953
JBrowse link
G Vps4b vacuolar protein sorting 4 homolog B ISO (MGI:MGI:1353213|PMID:10637304) RGD PMID:10637304 MGI:MGI:1353213 NCBI chr13:26,825,261...26,850,460
Ensembl chr13:26,825,261...26,850,460
JBrowse link
G Washc1 WASH complex subunit 1 ISO
IEA
(MGI:MGI:5806548|PMID:26965651)
GO_REF:0000107
RGD
Ensembl
PMID:26965651 GO_REF:0000107, MGI:MGI:5806548 NCBI chr 9:113,918,914...113,936,861
Ensembl chr 9:113,918,858...113,936,860
JBrowse link
G Washc4 WASH complex subunit 4 ISO
IBA
(PMID:23676666)
PMID:21873635
RGD PMID:23676666, PMID:21873635 RGD:13792537 NCBI chr 7:26,309,279...26,361,221
Ensembl chr 7:26,311,094...26,361,221
JBrowse link
endosomal lumen acidification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aqp11 aquaporin 11 ISO MGI:MGI:3528447 (MGI:MGI:3588799|PMID:16107722) RGD PMID:16107722 MGI:MGI:3588799 NCBI chr 1:162,703,394...162,713,560
Ensembl chr 1:162,703,442...162,713,610
JBrowse link
G Faslg Fas ligand IDA RGD PMID:18045865 RGD:2315735 NCBI chr13:79,696,811...79,717,581
Ensembl chr13:79,698,445...79,705,705
JBrowse link
G Tmem9 transmembrane protein 9 ISO (PMID:30374053) RGD PMID:30374053 NCBI chr13:52,854,031...52,871,300
Ensembl chr13:52,854,031...52,871,297
JBrowse link
endosome membrane tubulation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Coro1c coronin 1C ISO (PMID:30220460) RGD PMID:30220460 NCBI chr12:48,481,741...48,554,054
Ensembl chr12:48,481,750...48,554,052
JBrowse link
G Tmcc1 transmembrane and coiled-coil domain family 1 ISO
IBA
(PMID:30220460)
PMID:21873635
RGD PMID:30220460, PMID:21873635 RGD:13792537 NCBI chr 4:147,920,987...148,048,852
Ensembl chr 4:147,921,724...148,048,726
JBrowse link
intralumenal vesicle formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rilp Rab interacting lysosomal protein ISO (PMID:17959629) RGD PMID:17959629 NCBI chr10:63,658,451...63,662,428
Ensembl chr10:63,659,085...63,662,050
JBrowse link
G Snx3 sorting nexin 3 ISO (PMID:18767904) RGD PMID:18767904 NCBI chr20:47,225,382...47,263,390
Ensembl chr20:47,225,619...47,263,390
JBrowse link
multivesicular body assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rab11a RAB11a, member RAS oncogene family ISO (PMID:15634213) RGD PMID:15634213 NCBI chr 8:70,192,975...70,215,719
Ensembl chr 8:70,192,975...70,215,719
JBrowse link
G Vps4a vacuolar protein sorting 4 homolog A ISO
IEA
(MGI:MGI:5700294|PMID:21238931)
GO_REF:0000107
RGD
Ensembl
PMID:21238931 GO_REF:0000107, MGI:MGI:5700294 NCBI chr19:39,230,050...39,243,298
Ensembl chr19:39,229,754...39,243,496
JBrowse link
G Vps4b vacuolar protein sorting 4 homolog B ISO (MGI:MGI:5700294|PMID:21238931) RGD PMID:21238931 MGI:MGI:5700294 NCBI chr13:26,825,261...26,850,460
Ensembl chr13:26,825,261...26,850,460
JBrowse link
multivesicular body organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rab27a RAB27A, member RAS oncogene family ISO (PMID:23092844) RGD PMID:23092844 NCBI chr 8:79,722,334...79,776,228
Ensembl chr 8:79,722,334...79,776,221
JBrowse link
negative regulation of intralumenal vesicle formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prkn parkin RBR E3 ubiquitin protein ligase ISO (PMID:26911690) RGD PMID:26911690 NCBI chr 1:48,880,015...50,069,998 JBrowse link
positive regulation of endosome organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Synj1 synaptojanin 1 ISO (PMID:22511594) RGD PMID:22511594 NCBI chr11:31,105,784...31,181,573
Ensembl chr11:31,104,787...31,180,642
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20017
    cellular process 18791
      cellular component organization or biogenesis 6765
        cellular component organization 6509
          endomembrane system organization 439
            endosome organization 54
              endosomal lumen acidification 3
              endosome membrane tubulation 2
              intralumenal vesicle formation + 3
              multivesicular body organization + 4
              negative regulation of endosome organization + 1
              positive regulation of endosome organization + 1
              regulation of endosome organization + 2
Path 2
Term Annotations click to browse term
  biological_process 20017
    cellular process 18791
      cellular component organization or biogenesis 6765
        cellular component organization 6509
          organelle organization 4072
            vesicle organization 295
              endosome organization 54
                endosomal lumen acidification 3
                endosome membrane tubulation 2
                intralumenal vesicle formation + 3
                multivesicular body organization + 4
                negative regulation of endosome organization + 1
                positive regulation of endosome organization + 1
                regulation of endosome organization + 2
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.