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ONTOLOGY REPORT - ANNOTATIONS


Term:vacuolar transport
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Accession:GO:0007034 term browser browse the term
Definition:The directed movement of substances into, out of or within a vacuole.


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vacuolar transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp6v0d1 ATPase H+ transporting V0 subunit D1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:37,481,782...37,525,762
Ensembl chr19:37,481,782...37,525,762
JBrowse link
G Atp6v0d2 ATPase H+ transporting V0 subunit D2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:33,843,591...33,892,446
Ensembl chr 5:33,843,519...33,892,462
JBrowse link
G Chmp4c charged multivesicular body protein 4C IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:93,574,554...93,641,497
Ensembl chr 2:93,574,559...93,641,497
JBrowse link
G Ndfip1 Nedd4 family interacting protein 1 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr18:31,574,759...31,625,286
Ensembl chr18:31,574,821...31,625,274
JBrowse link
G Ndfip2 Nedd4 family interacting protein 2 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr15:89,407,426...89,458,983
Ensembl chr15:89,407,426...89,458,983
JBrowse link
endosome to lysosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07037545.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr  X:23,416,395...23,417,122 JBrowse link
G Aktip AKT interacting protein ISO
ISS
(PMID:18799622)
GO_REF:0000024
RGD
UniProt
PMID:18799622 GO_REF:0000024 NCBI chr19:17,290,048...17,300,054
Ensembl chr19:17,290,178...17,300,050
JBrowse link
G Atg14 autophagy related 14 ISO UniProtKB:O95295 (PMID:22797916) RGD PMID:22797916 NCBI chr15:24,343,418...24,374,776
Ensembl chr15:24,343,314...24,374,753
JBrowse link
G Becn2 beclin 2 ISO (PMID:23954414)
(MGI:MGI:5528919|PMID:23954414)
RGD PMID:23954414 MGI:MGI:5528919 NCBI chr13:93,971,720...93,974,467
Ensembl chr13:93,972,426...93,974,410
JBrowse link
G Bin1 bridging integrator 1 IEA
ISO
GO_REF:0000107
(PMID:27179792)
Ensembl
RGD
PMID:27179792 GO_REF:0000107 NCBI chr18:25,163,575...25,222,139
Ensembl chr18:25,163,561...25,222,135
JBrowse link
G Cdx2 caudal type homeo box 2 ISO (MGI:MGI:4457791|PMID:20551175) RGD PMID:20551175 MGI:MGI:4457791 NCBI chr12:9,464,026...9,470,565
Ensembl chr12:9,464,026...9,470,565
JBrowse link
G Chmp3 charged multivesicular body protein 3 IMP RGD PMID:18076377 RGD:4892661 NCBI chr 4:99,449,213...99,496,156
Ensembl chr 4:99,449,111...99,494,423
JBrowse link
G Chmp5 charged multivesicular body protein 5 ISO MGI:MGI:3626293 (MGI:MGI:3622513|PMID:16567502) RGD PMID:16567502 MGI:MGI:3622513 NCBI chr 5:57,267,312...57,284,455
Ensembl chr 5:57,267,312...57,284,448
JBrowse link
G Clec16a C-type lectin domain containing 16A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:5,002,196...5,196,914
Ensembl chr10:5,009,826...5,196,892
JBrowse link
G Dennd3 DENN domain containing 3 ISO (MGI:MGI:5448516|PMID:21718402) RGD PMID:21718402 MGI:MGI:5448516 NCBI chr 7:114,724,644...114,812,471
Ensembl chr 7:114,724,610...114,812,708
JBrowse link
G Dtx3l deltex E3 ubiquitin ligase 3L ISO (PMID:24790097) RGD PMID:24790097 NCBI chr11:67,758,093...67,767,623
NCBI chr11:67,768,542...67,772,428
Ensembl chr11:67,757,928...67,767,622
JBrowse link
G Epg5 ectopic P-granules autophagy protein 5 homolog ISO (PMID:29130391) RGD PMID:29130391 NCBI chr18:74,299,965...74,397,115
Ensembl chr18:74,299,931...74,395,547
JBrowse link
G Fam160a2 family with sequence similarity 160, member A2 ISO
ISS
(PMID:18799622)
GO_REF:0000024
RGD
UniProt
PMID:18799622 GO_REF:0000024 NCBI chr 1:170,216,505...170,238,898
Ensembl chr 1:170,212,817...170,238,890
JBrowse link
G Gprasp1 G protein-coupled receptor associated sorting protein 1 ISO
IEA
ISS
(PMID:23954414)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:23954414 GO_REF:0000024, GO_REF:0000107 NCBI chr  X:106,306,795...106,313,904
Ensembl chr  X:106,306,795...106,313,853
JBrowse link
G Hgs hepatocyte growth factor-regulated tyrosine kinase substrate IMP RGD PMID:19808888 RGD:4892648 NCBI chr10:109,638,944...109,657,460
Ensembl chr10:109,638,767...109,657,456
JBrowse link
G Hook1 hook microtubule-tethering protein 1 ISO (PMID:18799622) RGD PMID:18799622 NCBI chr 5:114,940,053...115,000,691
Ensembl chr 5:114,940,053...115,000,691
JBrowse link
G Hook2 hook microtubule-tethering protein 2 ISO (PMID:18799622) RGD PMID:18799622 NCBI chr19:26,106,713...26,119,353
Ensembl chr19:26,106,838...26,119,352
JBrowse link
G Hook3 hook microtubule-tethering protein 3 ISO (PMID:18799622) RGD PMID:18799622 NCBI chr16:70,710,347...70,818,789 JBrowse link
G Kif13a kinesin family member 13A ISO (PMID:19841138) RGD PMID:19841138 NCBI chr17:18,151,582...18,335,027
Ensembl chr17:18,151,982...18,335,019
JBrowse link
G Mgrn1 mahogunin ring finger 1 IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(PMID:17229889)
Ensembl
RGD
PMID:17229889, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr10:10,832,573...10,881,999
Ensembl chr10:10,833,519...10,881,977
JBrowse link
G Mtm1 myotubularin 1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:14722070)
Ensembl
UniProt
RGD
PMID:14722070 GO_REF:0000024, GO_REF:0000107 NCBI chr 6:18,821,821...18,840,449
Ensembl chr 6:18,821,815...18,839,409
JBrowse link
G Pcdhga3 protocadherin gamma subfamily A, 3 ISO
IEA
(MGI:MGI:5317350|PMID:21917590)
GO_REF:0000107
RGD
Ensembl
PMID:21917590 GO_REF:0000107, MGI:MGI:5317350 NCBI chr18:30,820,151...30,971,113
Ensembl chr18:30,820,321...30,822,735
JBrowse link
G Rab12 RAB12, member RAS oncogene family ISO
ISS
(MGI:MGI:5448516|PMID:21718402)
GO_REF:0000024
RGD
UniProt
PMID:21718402 GO_REF:0000024, MGI:MGI:5448516 NCBI chr 9:114,683,985...114,709,613
Ensembl chr 9:114,684,039...114,709,546
JBrowse link
G Rab7a RAB7A, member RAS oncogene family ISO
IBA
(PMID:18272684)
PMID:21873635
RGD PMID:18272684, PMID:21873635 RGD:13792537 NCBI chr 4:119,910,461...119,963,065
Ensembl chr 4:119,910,478...119,959,173
JBrowse link
G Rab7b Rab7b, member RAS oncogene family IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:48,456,143...48,483,714
Ensembl chr13:48,455,923...48,482,138
JBrowse link
G Rhob ras homolog family member B ISO
ISS
(PMID:10508588)
GO_REF:0000024
RGD
UniProt
PMID:10508588 GO_REF:0000024 NCBI chr 6:33,689,127...33,691,301
Ensembl chr 6:33,689,127...33,691,301
JBrowse link
G Rilp Rab interacting lysosomal protein ISO (PMID:18272684) RGD PMID:18272684 NCBI chr10:63,658,451...63,662,428
Ensembl chr10:63,659,085...63,662,050
JBrowse link
G Rnf157 ring finger protein 157 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:105,291,148...105,368,316
Ensembl chr10:105,293,490...105,368,242
JBrowse link
G Scyl2 SCY1 like pseudokinase 2 ISO (PMID:19643732) RGD PMID:19643732 NCBI chr 7:30,291,087...30,344,464
Ensembl chr 7:30,291,087...30,344,445
JBrowse link
G Snapin SNAP-associated protein ISO
IBA
UniProtKB:Q6ZNE5 (PMID:22797916)
PMID:21873635
RGD PMID:22797916, PMID:21873635 RGD:13792537 NCBI chr 2:189,878,159...189,880,743
Ensembl chr 2:189,878,168...189,880,743
JBrowse link
G Snx16 sorting nexin 16 IEA
IBA
ISS
ISO
GO_REF:0000107
PMID:21873635
GO_REF:0000024
(PMID:12813048)
Ensembl
UniProt
RGD
PMID:12813048, PMID:21873635 GO_REF:0000024, GO_REF:0000107, RGD:13792537 NCBI chr 2:93,518,796...93,541,056
Ensembl chr 2:93,518,806...93,540,328
JBrowse link
G Snx27 sorting nexin 27 IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 2:195,738,613...195,821,608
Ensembl chr 2:195,738,619...195,821,608
JBrowse link
G Sort1 sortilin 1 ISO (PMID:11331584) RGD PMID:11331584 NCBI chr 2:211,078,092...211,156,312
Ensembl chr 2:211,078,334...211,156,312
JBrowse link
G Stx7 syntaxin 7 IDA RGD PMID:15133481 RGD:4892614 NCBI chr 1:22,241,655...22,281,850
Ensembl chr 1:22,241,661...22,281,788
JBrowse link
G Stx8 syntaxin 8 IDA RGD PMID:15133481 RGD:4892614 NCBI chr10:54,512,922...54,753,302
Ensembl chr10:54,512,983...54,753,302
JBrowse link
G Tgfbrap1 transforming growth factor, beta receptor associated protein 1 ISO (PMID:25266290) RGD PMID:25266290 NCBI chr 9:49,852,560...49,902,943
Ensembl chr 9:49,852,560...49,902,943
JBrowse link
G Trak1 trafficking kinesin protein 1 ISO
IBA
(PMID:18675823)
PMID:21873635
RGD PMID:18675823, PMID:21873635 RGD:13792537 NCBI chr 8:129,946,596...130,106,382
Ensembl chr 8:130,009,573...130,106,382
JBrowse link
G Trak2 trafficking kinesin protein 2 IDA RGD PMID:17062640 RGD:13208835 NCBI chr 9:65,698,706...65,763,351
Ensembl chr 9:65,698,712...65,763,273
JBrowse link
G Tsg101 tumor susceptibility 101 IMP RGD PMID:19808888 RGD:4892648 NCBI chr 1:102,941,151...102,971,017
Ensembl chr 1:102,941,231...102,970,950
JBrowse link
G Vamp7 vesicle-associated membrane protein 7 IDA
IBA
ISO
PMID:21873635
(PMID:10888671)
RGD PMID:10888671, PMID:15133481, PMID:21873635 RGD:4892614, RGD:13792537 NCBI chr12:18,996,566...19,033,714
Ensembl chr12:18,996,591...19,030,381
JBrowse link
G Vipas39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog NOT IEA
ISO
GO_REF:0000107
(PMID:25783203)
(PMID:19109425)
Ensembl
RGD
PMID:19109425, PMID:25783203 GO_REF:0000107 NCBI chr 6:111,271,283...111,296,013
Ensembl chr 6:111,271,240...111,295,994
JBrowse link
G Vps11 VPS11 core subunit of CORVET and HOPS complexes ISO (PMID:25783203) RGD PMID:25783203 NCBI chr 8:48,677,492...48,692,295
Ensembl chr 8:48,677,492...48,692,295
JBrowse link
G Vps16 VPS16 core subunit of CORVET and HOPS complexes ISO (PMID:25783203) RGD PMID:25783203 NCBI chr 3:122,947,887...122,969,543
Ensembl chr 3:122,947,913...122,969,541
JBrowse link
G Vps18 VPS18 core subunit of CORVET and HOPS complexes ISO (PMID:25783203) RGD PMID:25783203 NCBI chr 3:111,097,352...111,108,206
Ensembl chr 3:111,097,326...111,108,295
JBrowse link
G Vps33a VPS33A core subunit of CORVET and HOPS complexes ISO (PMID:25783203) RGD PMID:25783203 NCBI chr12:38,459,816...38,482,903
Ensembl chr12:38,459,832...38,484,512
JBrowse link
G Vps33b VPS33B, late endosome and lysosome associated NOT ISO (PMID:25783203) RGD PMID:25783203 NCBI chr 1:142,060,955...142,083,955
Ensembl chr 1:142,060,955...142,083,953
JBrowse link
G Vps39 VPS39 subunit of HOPS complex ISO (PMID:25266290), (PMID:25783203) RGD PMID:25266290, PMID:25783203 NCBI chr 3:112,087,213...112,125,307
Ensembl chr 3:112,087,677...112,125,318
JBrowse link
G Vps41 VPS41 subunit of HOPS complex ISO (PMID:25783203) RGD PMID:25783203 NCBI chr17:48,643,754...48,810,633
Ensembl chr17:48,648,879...48,810,991
JBrowse link
endosome to lysosome transport via multivesicular body sorting pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07028902.1 IEA GO_REF:0000107 Ensembl GO_REF:0000107 Ensembl chr17:90,370,882...90,522,091 JBrowse link
G Lyst lysosomal trafficking regulator ISO (PMID:9606205) RGD PMID:9606205 NCBI chr17:90,323,055...90,522,091 JBrowse link
G Mvb12a multivesicular body subunit 12A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:19,973,611...19,978,479
Ensembl chr16:19,973,636...19,978,478
JBrowse link
G Ubxn6 UBX domain protein 6 ISO (PMID:21822278) RGD PMID:21822278 NCBI chr 9:10,995,516...11,000,643
Ensembl chr 9:10,995,198...11,000,642
JBrowse link
G Vcp valosin-containing protein ISO
ISS
(PMID:21822278)
GO_REF:0000024
RGD
UniProt
PMID:21822278 GO_REF:0000024 NCBI chr 5:58,426,548...58,445,953
Ensembl chr 5:58,426,549...58,445,953
JBrowse link
G Vps4b vacuolar protein sorting 4 homolog B ISO (PMID:15024011) RGD PMID:15024011 NCBI chr13:26,825,261...26,850,460
Ensembl chr13:26,825,261...26,850,460
JBrowse link
Golgi to lysosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ankfy1 ankyrin repeat and FYVE domain containing 1 ISO (PMID:22284051) RGD PMID:22284051 NCBI chr10:59,259,955...59,331,669
Ensembl chr10:59,259,955...59,331,669
JBrowse link
G Ap1g1 adaptor related protein complex 1 subunit gamma 1 ISO (PMID:23632890) RGD PMID:23632890 NCBI chr19:41,805,252...41,860,076 JBrowse link
G Ap4m1 adaptor related protein complex 4 subunit mu 1 ISO
IBA
ISS
(PMID:11139587)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:11139587, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr12:19,314,222...19,320,339
Ensembl chr12:19,314,251...19,320,142
JBrowse link
G Ccdc91 coiled-coil domain containing 91 ISO
IBA
ISS
(PMID:17596511)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:17596511, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 4:181,873,465...182,043,593
Ensembl chr 4:181,874,861...182,043,593
JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin ISO (PMID:18817525) RGD PMID:18817525 NCBI chr 1:197,986,384...197,999,726
Ensembl chr 1:197,986,385...197,997,664
JBrowse link
G Ehd3 EH-domain containing 3 IEA
ISO
GO_REF:0000107
(PMID:19139087)
Ensembl
RGD
PMID:19139087 GO_REF:0000107 NCBI chr 6:25,076,012...25,102,457
Ensembl chr 6:25,074,955...25,100,977
JBrowse link
G Gak cyclin G associated kinase IEA
ISO
GO_REF:0000107
(PMID:16155256)
Ensembl
RGD
PMID:16155256 GO_REF:0000107 NCBI chr14:2,100,104...2,174,332
Ensembl chr14:2,100,106...2,174,318
JBrowse link
G Lamp1 lysosomal-associated membrane protein 1 ISO (PMID:23632890) RGD PMID:23632890 NCBI chr16:81,689,576...81,714,341
Ensembl chr16:81,689,335...81,714,419
JBrowse link
G Rbsn rabenosyn, RAB effector ISO (PMID:19139087) RGD PMID:19139087 NCBI chr 4:124,050,559...124,080,919
Ensembl chr 4:124,052,300...124,080,906
JBrowse link
Golgi to vacuole transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap1g2 adaptor related protein complex 1 subunit gamma 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:33,759,108...33,767,017
Ensembl chr15:33,759,001...33,766,438
JBrowse link
G Ap3d1 adaptor related protein complex 3 subunit delta 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:11,838,639...11,873,992
Ensembl chr 7:11,838,639...11,873,984
JBrowse link
G Gosr2 golgi SNAP receptor complex member 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:91,735,772...91,756,123
Ensembl chr10:91,736,780...91,756,081
JBrowse link
G Rnf215 ring finger protein 215 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:84,368,440...84,374,879
Ensembl chr14:84,368,476...84,374,879
JBrowse link
G Vps52 VPS52 subunit of GARP complex IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:5,431,997...5,441,736
Ensembl chr20:5,432,004...5,441,706
JBrowse link
G Vps54 VPS54 subunit of GARP complex IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:106,153,407...106,207,715
Ensembl chr14:106,153,575...106,207,658
JBrowse link
G Vti1a vesicle transport through interaction with t-SNAREs 1A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:276,310,072...276,508,635
Ensembl chr 1:276,309,927...276,490,602
JBrowse link
G Vti1b vesicle transport through interaction with t-SNAREs 1B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:102,340,261...102,353,612
Ensembl chr 6:102,339,857...102,353,403
JBrowse link
L-histidine transmembrane export from vacuole term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc15a4 solute carrier family 15 member 4 IEA
ISO
GO_REF:0000107
(MGI:MGI:5897714|PMID:27845049)
Ensembl
RGD
PMID:27845049 GO_REF:0000107, MGI:MGI:5897714 NCBI chr12:32,753,824...32,773,277
Ensembl chr12:32,753,824...32,773,277
JBrowse link
late endosome to lysosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RGD1359108 similar to RIKEN cDNA 3110043O21 ISO
IEA
ISS
(MGI:MGI:5779453|PMID:26989253)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:26989253 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5779453 NCBI chr 5:50,666,444...50,691,523
Ensembl chr 5:50,668,040...50,684,409
JBrowse link
G Snapin SNAP-associated protein ISO MGI:MGI:3608768 (MGI:MGI:4879078|PMID:20920792) RGD PMID:20920792 MGI:MGI:4879078 NCBI chr 2:189,878,159...189,880,743
Ensembl chr 2:189,878,168...189,880,743
JBrowse link
G Vps39 VPS39 subunit of HOPS complex ISO (PMID:23167963) RGD PMID:23167963 NCBI chr 3:112,087,213...112,125,307
Ensembl chr 3:112,087,677...112,125,318
JBrowse link
G Vps41 VPS41 subunit of HOPS complex ISO (PMID:23167963) RGD PMID:23167963 NCBI chr17:48,643,754...48,810,633
Ensembl chr17:48,648,879...48,810,991
JBrowse link
late endosome to vacuole transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Becn1 beclin 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:89,209,944...89,225,297
Ensembl chr10:89,209,940...89,225,297
JBrowse link
G Becn2 beclin 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:93,971,720...93,974,467
Ensembl chr13:93,972,426...93,974,410
JBrowse link
G Chmp1a charged multivesicular body protein 1A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:56,001,724...56,010,004
Ensembl chr19:56,001,724...56,010,004
JBrowse link
G Chmp2a charged multivesicular body protein 2A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:65,540,808...65,543,708
Ensembl chr 1:65,541,322...65,543,707
JBrowse link
G Chmp2b charged multivesicular body protein 2B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:2,666,405...2,692,213
Ensembl chr11:2,665,285...2,692,198
JBrowse link
G Chmp3 charged multivesicular body protein 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:99,449,213...99,496,156
Ensembl chr 4:99,449,111...99,494,423
JBrowse link
G Chmp7 charged multivesicular body protein 7 ISO (PMID:16856878) RGD PMID:16856878 NCBI chr15:51,385,373...51,400,606
Ensembl chr15:51,385,386...51,400,606
JBrowse link
G Pik3r4 phosphoinositide-3-kinase, regulatory subunit 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:114,300,248...114,350,686
Ensembl chr 8:114,300,257...114,350,681
JBrowse link
G RGD1566265 similar to RIKEN cDNA 2610002M06 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:78,870,964...78,911,601
Ensembl chr  X:78,870,964...78,911,601
JBrowse link
late endosome to vacuole transport via multivesicular body sorting pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chmp4b charged multivesicular body protein 4B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:150,188,275...150,227,453
Ensembl chr 3:150,188,455...150,227,405
JBrowse link
G Chmp4bl1 chromatin modifying protein 4B-like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:67,059,939...67,060,988
Ensembl chr 4:67,059,939...67,060,974
JBrowse link
G Chmp4c charged multivesicular body protein 4C IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:93,574,554...93,641,497
Ensembl chr 2:93,574,559...93,641,497
JBrowse link
G Chmp5 charged multivesicular body protein 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:57,267,312...57,284,455
Ensembl chr 5:57,267,312...57,284,448
JBrowse link
G Chmp6 charged multivesicular body protein 6 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:109,073,678...109,079,348
Ensembl chr10:109,073,678...109,079,348
JBrowse link
G Chmp7 charged multivesicular body protein 7 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:51,385,373...51,400,606
Ensembl chr15:51,385,386...51,400,606
JBrowse link
G Leprot leptin receptor overlapping transcript IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:120,498,910...120,511,011
Ensembl chr 5:120,498,883...120,511,017
JBrowse link
G Leprotl1 leptin receptor overlapping transcript-like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:61,758,941...61,769,655
Ensembl chr16:61,758,917...61,771,569
JBrowse link
G Tmem50a transmembrane protein 50A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:153,233,965...153,252,006
Ensembl chr 5:153,233,962...153,252,021
JBrowse link
G Tmem50b transmembrane protein 50B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:31,719,441...31,752,276
Ensembl chr11:31,719,443...31,752,243
JBrowse link
G Vta1 vesicle trafficking 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:8,830,405...8,878,191
Ensembl chr 1:8,830,411...8,878,244
JBrowse link
lysosomal transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07026294.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr16:70,905,993...70,909,439 JBrowse link
G Als2 alsin Rho guanine nucleotide exchange factor ALS2 ISO (PMID:12837691) RGD PMID:12837691 NCBI chr 9:65,961,361...66,034,396
Ensembl chr 9:65,961,346...66,033,871
JBrowse link
G Atp13a2 ATPase cation transporting 13A2 ISO (PMID:31996848) RGD PMID:31996848 NCBI chr 5:159,512,208...159,531,631
Ensembl chr 5:159,512,285...159,531,637
JBrowse link
G Grn granulin precursor ISS
ISO
IEA
GO_REF:0000024
(MGI:MGI:5920379|PMID:28541286)
(PMID:28541286)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:28541286 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5920379 NCBI chr10:90,377,103...90,383,207
Ensembl chr10:90,376,933...90,383,205
JBrowse link
G Hgsnat heparan-alpha-glucosaminide N-acetyltransferase ISO (PMID:20650889) RGD PMID:20650889 NCBI chr16:70,876,557...70,909,443 JBrowse link
G Hspa1a heat shock protein family A (Hsp70) member 1A ISS
ISO
GO_REF:0000024
(MGI:MGI:6274951|PMID:27789271)
UniProt
RGD
PMID:27789271 GO_REF:0000024, MGI:MGI:6274951 NCBI chr20:4,875,834...4,881,751
Ensembl chr20:4,877,324...4,879,779
JBrowse link
G Hspa1b heat shock protein family A (Hsp70) member 1B ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr20:4,877,638...4,880,112
Ensembl chr20:2,699,712...2,701,815
JBrowse link
G Igf2r insulin-like growth factor 2 receptor IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:48,176,095...48,264,482
Ensembl chr 1:48,176,106...48,264,477
JBrowse link
G LOC100909548 cation-dependent mannose-6-phosphate receptor-like ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr  X:88,312,689...88,321,836
Ensembl chr  X:88,312,675...88,321,834
JBrowse link
G LOC108348108 heat shock 70 kDa protein 1A ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr20:2,699,707...2,701,856
Ensembl chr20:4,877,324...4,879,779
Ensembl chr20:4,877,324...4,879,779
JBrowse link
G Lrp1 LDL receptor related protein 1 ISO (MGI:MGI:5701557|PMID:26370502) RGD PMID:26370502 MGI:MGI:5701557 NCBI chr 7:70,846,313...70,927,028
Ensembl chr 7:70,846,344...70,926,903
JBrowse link
G M6pr mannose-6-phosphate receptor, cation dependent ISS
ISO
GO_REF:0000024
(MGI:MGI:5701557|PMID:26370502)
UniProt
RGD
PMID:26370502 GO_REF:0000024, MGI:MGI:5701557 NCBI chr 4:155,084,755...155,093,896
Ensembl chr 4:155,088,317...155,092,827
JBrowse link
G Nedd4 NEDD4 E3 ubiquitin protein ligase ISO (PMID:18544533) RGD PMID:18544533 NCBI chr 8:79,323,408...79,408,842
Ensembl chr 8:79,323,408...79,408,833
JBrowse link
G Pcsk9 proprotein convertase subtilisin/kexin type 9 ISO (PMID:17452316) RGD PMID:17452316 NCBI chr 5:126,031,368...126,053,726
Ensembl chr 5:126,031,368...126,053,726
JBrowse link
G Psap prosaposin ISS
ISO
IEA
GO_REF:0000024
(PMID:26370502), (PMID:28541286), (PMID:28835281)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:26370502, PMID:28541286, PMID:28835281 GO_REF:0000024, GO_REF:0000107 NCBI chr20:29,831,302...29,856,876
Ensembl chr20:29,831,314...29,856,875
JBrowse link
G Rab34 RAB34, member RAS oncogene family ISO (MGI:MGI:5467668|PMID:23197834) RGD PMID:23197834 MGI:MGI:5467668 NCBI chr10:65,448,111...65,452,178
Ensembl chr10:65,448,950...65,452,177
JBrowse link
G Sptbn5 spectrin, beta, non-erythrocytic 5 ISO (PMID:23704327) RGD PMID:23704327 NCBI chr 3:111,833,411...111,875,551 JBrowse link
G Tmem106b transmembrane protein 106B ISO
IBA
(MGI:MGI:5588048|PMID:25066864)
PMID:21873635
RGD PMID:25066864, PMID:21873635 MGI:MGI:5588048, RGD:13792537 NCBI chr 4:39,517,679...39,534,491
Ensembl chr 4:39,517,548...39,535,169
JBrowse link
G Vps51 VPS51 subunit of GARP complex ISO
IBA
(PMID:25799061)
PMID:21873635
RGD PMID:25799061, PMID:21873635 RGD:13792537 Ensembl chr 1:221,430,648...221,440,467 JBrowse link
G Vps52 VPS52 subunit of GARP complex ISO
IBA
(PMID:25799061)
PMID:21873635
RGD PMID:25799061, PMID:21873635 RGD:13792537 NCBI chr20:5,431,997...5,441,736
Ensembl chr20:5,432,004...5,441,706
JBrowse link
G Vps53 VPS53 subunit of GARP complex ISO (PMID:25799061) RGD PMID:25799061 NCBI chr10:64,218,596...64,341,064
Ensembl chr10:64,222,276...64,341,109
JBrowse link
G Vps54 VPS54 subunit of GARP complex ISO
IEA
(PMID:25799061)
GO_REF:0000107
RGD
Ensembl
PMID:25799061 GO_REF:0000107 NCBI chr14:106,153,407...106,207,715
Ensembl chr14:106,153,575...106,207,658
JBrowse link
mitochondrion to lysosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pink1 PTEN induced kinase 1 ISO (PMID:24446486) RGD PMID:24446486 NCBI chr 5:156,677,146...156,689,258
Ensembl chr 5:156,677,146...156,689,415
JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase ISO (PMID:24446486) RGD PMID:24446486 NCBI chr 1:48,880,015...50,069,998 JBrowse link
G Vps35 VPS35 retromer complex component ISO (PMID:26618722) RGD PMID:26618722 NCBI chr19:27,464,937...27,500,636
Ensembl chr19:27,464,937...27,500,636
JBrowse link
multivesicular body-lysosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chmp3 charged multivesicular body protein 3 ISO (PMID:16554368) RGD PMID:16554368 NCBI chr 4:99,449,213...99,496,156
Ensembl chr 4:99,449,111...99,494,423
JBrowse link
N-glycan processing to lysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gnptab N-acetylglucosamine-1-phosphate transferase subunits alpha and beta ISO
IBA
(PMID:19938078), (PMID:25505245)
PMID:21873635
RGD PMID:19938078, PMID:25505245, PMID:21873635 RGD:13792537 NCBI chr 7:28,956,363...29,023,232
Ensembl chr 7:28,956,512...29,022,868
JBrowse link
negative regulation of late endosome to lysosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vps35 VPS35 retromer complex component ISO (PMID:23563491) RGD PMID:23563491 NCBI chr19:27,464,937...27,500,636
Ensembl chr19:27,464,937...27,500,636
JBrowse link
neurotransmitter receptor transport, postsynaptic endosome to lysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap3d1 adaptor related protein complex 3 subunit delta 1 ISO
IBA
(MGI:MGI:5819335|PMID:24217640)
PMID:21873635
RGD PMID:24217640, PMID:21873635 MGI:MGI:5819335, RGD:13792537 NCBI chr 7:11,838,639...11,873,992
Ensembl chr 7:11,838,639...11,873,984
JBrowse link
G Cacng2 calcium voltage-gated channel auxiliary subunit gamma 2 ISO
IBA
(MGI:MGI:5819335|PMID:24217640)
PMID:21873635
RGD PMID:24217640, PMID:21873635 MGI:MGI:5819335, RGD:13792537 NCBI chr 7:119,228,112...119,353,332
Ensembl chr 7:119,228,102...119,352,605
JBrowse link
G Cacng3 calcium voltage-gated channel auxiliary subunit gamma 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:192,613,766...192,708,371
Ensembl chr 1:192,613,372...192,709,078
JBrowse link
G Cacng4 calcium voltage-gated channel auxiliary subunit gamma 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:95,954,160...96,015,484
Ensembl chr10:95,951,234...96,015,499
JBrowse link
G Cacng5 calcium voltage-gated channel auxiliary subunit gamma 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:96,122,240...96,166,606
Ensembl chr10:96,123,397...96,131,880
JBrowse link
G Cacng7 calcium voltage-gated channel auxiliary subunit gamma 7 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:64,374,547...64,405,380
Ensembl chr 1:64,374,603...64,405,149
JBrowse link
G Cacng8 calcium voltage-gated channel auxiliary subunit gamma 8 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:64,330,106...64,350,338
Ensembl chr 1:64,330,106...64,350,338
JBrowse link
positive regulation of late endosome to lysosome transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arf1 ADP-ribosylation factor 1 IMP RGD PMID:21421027 RGD:9684860 NCBI chr10:45,562,700...45,579,214
Ensembl chr10:45,563,547...45,579,029
JBrowse link
protein targeting to lysosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap3b1 adaptor related protein complex 3 subunit beta 1 ISO MGI:MGI:1856989 (MGI:MGI:2679144|PMID:14557411) RGD PMID:14557411 MGI:MGI:2679144 NCBI chr 2:24,022,815...24,227,522
Ensembl chr 2:24,024,791...24,226,224
JBrowse link
G Ap4m1 adaptor related protein complex 4 subunit mu 1 ISO (PMID:11139587) RGD PMID:11139587 NCBI chr12:19,314,222...19,320,339
Ensembl chr12:19,314,251...19,320,142
JBrowse link
G Gcc2 GRIP and coiled-coil domain containing 2 IEA
IBA
ISS
ISO
GO_REF:0000107
PMID:21873635
GO_REF:0000024
(PMID:16885419)
Ensembl
UniProt
RGD
PMID:16885419, PMID:21873635 GO_REF:0000024, GO_REF:0000107, RGD:13792537 NCBI chr20:27,832,960...27,879,764
Ensembl chr20:27,832,932...27,879,759
JBrowse link
G Hgs hepatocyte growth factor-regulated tyrosine kinase substrate IEA
ISO
GO_REF:0000107
(PMID:18767904)
Ensembl
RGD
PMID:18767904 GO_REF:0000107 NCBI chr10:109,638,944...109,657,460
Ensembl chr10:109,638,767...109,657,456
JBrowse link
G Lhcgr luteinizing hormone/choriogonadotropin receptor IMP chorionic gonadotropin after receptor internalization RGD PMID:10847593 RGD:2292601 NCBI chr 6:12,493,182...12,554,482
Ensembl chr 6:12,493,943...12,554,439
JBrowse link
G LOC100909548 cation-dependent mannose-6-phosphate receptor-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:88,312,689...88,321,836
Ensembl chr  X:88,312,675...88,321,834
JBrowse link
G M6pr mannose-6-phosphate receptor, cation dependent IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:155,084,755...155,093,896
Ensembl chr 4:155,088,317...155,092,827
JBrowse link
G Ncoa4 nuclear receptor coactivator 4 ISO (PMID:25327288) RGD PMID:25327288 NCBI chr16:8,302,950...8,323,294
Ensembl chr16:8,302,950...8,323,293
JBrowse link
G Nedd4 NEDD4 E3 ubiquitin protein ligase ISO
IBA
(PMID:17116753)
PMID:21873635
RGD PMID:17116753, PMID:21873635 RGD:13792537 NCBI chr 8:79,323,408...79,408,842
Ensembl chr 8:79,323,408...79,408,833
JBrowse link
G Numa1 nuclear mitotic apparatus protein 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:167,044,544...167,091,453
Ensembl chr 1:167,051,209...167,091,453
JBrowse link
G Rab7a RAB7A, member RAS oncogene family ISO (PMID:22115783) RGD PMID:22115783 NCBI chr 4:119,910,461...119,963,065
Ensembl chr 4:119,910,478...119,959,173
JBrowse link
G Scarb2 scavenger receptor class B, member 2 ISO (MGI:MGI:3773765|PMID:18022370)
(PMID:18022370)
RGD PMID:18022370 MGI:MGI:3773765 NCBI chr14:17,064,173...17,115,620
Ensembl chr14:17,064,353...17,115,963
JBrowse link
G Snx16 sorting nexin 16 IEA
IBA
ISS
ISO
GO_REF:0000107
PMID:21873635
GO_REF:0000024
(PMID:12813048)
Ensembl
UniProt
RGD
PMID:12813048, PMID:21873635 GO_REF:0000024, GO_REF:0000107, RGD:13792537 NCBI chr 2:93,518,796...93,541,056
Ensembl chr 2:93,518,806...93,540,328
JBrowse link
G Sorl1 sortilin related receptor 1 ISO (PMID:24523320) RGD PMID:24523320 NCBI chr 8:46,228,077...46,287,171 JBrowse link
G Sort1 sortilin 1 ISO MGI:MGI:4397584 (MGI:MGI:4368056|PMID:19732768) RGD PMID:19732768 MGI:MGI:4368056 NCBI chr 2:211,078,092...211,156,312
Ensembl chr 2:211,078,334...211,156,312
JBrowse link
G Vps4a vacuolar protein sorting 4 homolog A ISO (PMID:16973552) RGD PMID:16973552 NCBI chr19:39,230,050...39,243,298
Ensembl chr19:39,229,754...39,243,496
JBrowse link
G Zfyve16 zinc finger FYVE-type containing 16 ISO
IBA
(PMID:11546807)
PMID:21873635
RGD PMID:11546807, PMID:21873635 RGD:13792537 NCBI chr 2:22,060,879...22,105,822
Ensembl chr 2:22,062,050...22,105,710
JBrowse link
protein targeting to lysosome involved in chaperone-mediated autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07011951.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 2:177,651,241...177,653,288 JBrowse link
G AABR07033324.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr11:17,336,444...17,340,373 JBrowse link
G AABR07048992.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 5:99,031,013...99,033,107 JBrowse link
G Hsc70-ps1 heat shock cognate protein 70, pseudogene 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:177,651,231...177,653,349 JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 ISO
IBA
(PMID:26212789)
PMID:21873635
RGD PMID:26212789, PMID:21873635 RGD:13792537 NCBI chr 8:44,989,401...44,993,261
Ensembl chr 8:44,990,014...44,993,179
JBrowse link
G Lamp2 lysosomal-associated membrane protein 2 IGI
IBA
ISS
ISO
IMP
PMID:18644871
PMID:21873635
GO_REF:0000024
(MGI:MGI:5805578|PMID:27628032)
(PMID:27628032)
UniProt
RGD
PMID:27628032, PMID:18644871, PMID:21873635, PMID:18644871 GO_REF:0000024, MGI:MGI:5805578, RGD:10412301, RGD:13792537, RGD:10412301 NCBI chr  X:124,722,628...124,766,079
Ensembl chr  X:124,722,628...124,766,044
JBrowse link
G LOC100363133 heat shock cognate 71 kDa protein-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:99,030,998...99,033,110 JBrowse link
G LOC680121 similar to heat shock protein 8 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:13,499,168...13,501,271
Ensembl chr11:13,499,164...13,501,263
JBrowse link
protein targeting to vacuole term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07006458.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:235,387,153...235,405,831 JBrowse link
G Ap3d1 adaptor related protein complex 3 subunit delta 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:11,838,639...11,873,992
Ensembl chr 7:11,838,639...11,873,984
JBrowse link
G Gosr2 golgi SNAP receptor complex member 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:91,735,772...91,756,123
Ensembl chr10:91,736,780...91,756,081
JBrowse link
G Mon1a MON1 homolog A, secretory trafficking associated IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 8:116,657,345...116,682,172
Ensembl chr 8:116,657,371...116,682,178
JBrowse link
G Mon1b MON1 homolog B, secretory trafficking associated IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr19:45,938,433...45,946,647
Ensembl chr19:45,938,915...45,945,741
JBrowse link
G Pik3r4 phosphoinositide-3-kinase, regulatory subunit 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:114,300,248...114,350,686
Ensembl chr 8:114,300,257...114,350,681
JBrowse link
G Rnf215 ring finger protein 215 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:84,368,440...84,374,879
Ensembl chr14:84,368,476...84,374,879
JBrowse link
G Vps13c vacuolar protein sorting 13 homolog C IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:73,682,814...73,843,290
Ensembl chr 8:73,682,887...73,842,928
JBrowse link
G Vps13d vacuolar protein sorting 13 homolog D IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:162,891,451...163,119,239
Ensembl chr 5:162,891,451...163,119,239
JBrowse link
G Vps37a VPS37A subunit of ESCRT-I IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:54,860,811...54,899,410
Ensembl chr16:54,860,868...54,899,347
JBrowse link
G Vps37b VPS37B subunit of ESCRT-I IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:37,984,790...38,023,369
Ensembl chr12:37,984,790...38,023,368
JBrowse link
G Vps37c VPS37C subunit of ESCRT-I IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:226,742,267...226,774,109
Ensembl chr 1:226,742,343...226,767,868
JBrowse link
G Vps37d VPS37D subunit of ESCRT-I IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:24,651,342...24,656,793
Ensembl chr12:24,651,314...24,656,793
JBrowse link
G Vps41 VPS41 subunit of HOPS complex IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:48,643,754...48,810,633
Ensembl chr17:48,648,879...48,810,991
JBrowse link
G Vti1a vesicle transport through interaction with t-SNAREs 1A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:276,310,072...276,508,635
Ensembl chr 1:276,309,927...276,490,602
JBrowse link
G Vti1b vesicle transport through interaction with t-SNAREs 1B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:102,340,261...102,353,612
Ensembl chr 6:102,339,857...102,353,403
JBrowse link
protein targeting to vacuole involved in autophagy term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 ISO (PMID:22020285) RGD PMID:22020285 NCBI chr12:11,433,815...11,526,465
Ensembl chr12:11,407,213...11,526,465
JBrowse link
protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Snf8 SNF8 subunit of ESCRT-II IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:83,856,331...83,868,621
Ensembl chr10:83,856,280...83,868,598
JBrowse link
G Stam signal transducing adaptor molecule IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:81,209,795...81,256,111
Ensembl chr17:81,209,867...81,255,808
JBrowse link
G Vps25 vacuolar protein sorting 25 homolog IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:89,174,684...89,180,165
Ensembl chr10:89,174,684...89,180,160
JBrowse link
G Vps28 VPS28 subunit of ESCRT-I IEA
IBA
GO_REF:0000104
PMID:21873635
UniProt PMID:21873635 GO_REF:0000104, RGD:13792537 NCBI chr 7:117,684,339...117,688,187
Ensembl chr 7:117,684,339...117,688,187
JBrowse link
G Vps36 vacuolar protein sorting 36 homolog IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:74,719,642...74,743,921
Ensembl chr16:74,719,553...74,743,927
JBrowse link
regulation of protein targeting to vacuolar membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vamp7 vesicle-associated membrane protein 7 ISO (MGI:MGI:3774712|PMID:18227281) RGD PMID:18227281 MGI:MGI:3774712 NCBI chr12:18,996,566...19,033,714
Ensembl chr12:18,996,591...19,030,381
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    cellular process 18788
      vacuolar transport 156
        Golgi to vacuole transport + 17
        endocytosed protein transport to vacuole 0
        flavonoid transport from endoplasmic reticulum to plant-type vacuole 0
        late endosome to vacuole transport + 24
        lysosomal transport + 115
        negative regulation of vacuolar transport + 1
        plastid to vacuole vesicle-mediated transport 0
        positive regulation of vacuolar transport + 1
        protein targeting to vacuole + 44
        regulation of vacuolar transport + 3
        retrograde transport, vacuole to Golgi 0
        vacuolar transmembrane transport + 1
Path 2
Term Annotations click to browse term
  biological_process 20014
    localization 6486
      establishment of localization 4918
        transport 4774
          vacuolar transport 156
            Golgi to vacuole transport + 17
            endocytosed protein transport to vacuole 0
            flavonoid transport from endoplasmic reticulum to plant-type vacuole 0
            late endosome to vacuole transport + 24
            lysosomal transport + 115
            negative regulation of vacuolar transport + 1
            plastid to vacuole vesicle-mediated transport 0
            positive regulation of vacuolar transport + 1
            protein targeting to vacuole + 44
            regulation of vacuolar transport + 3
            retrograde transport, vacuole to Golgi 0
            vacuolar transmembrane transport + 1
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.