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ONTOLOGY REPORT - ANNOTATIONS


Term:blastoderm segmentation
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Accession:GO:0007350 term browser browse the term
Definition:The hierarchical steps resulting in the progressive subdivision of the anterior/posterior axis of the embryo.


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anterior/posterior axis specification, embryo term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Frs2 fibroblast growth factor receptor substrate 2 ISO MGI:MGI:3580390 (MGI:MGI:3580203|PMID:15870281) RGD PMID:15870281 MGI:MGI:3580203 NCBI chr 7:60,128,506...60,210,482
Ensembl chr 7:60,128,508...60,210,518
JBrowse link
G Fzd5 frizzled class receptor 5 ISO
IEA
(PMID:9054360)
GO_REF:0000107
RGD
Ensembl
PMID:9054360 GO_REF:0000107 NCBI chr 9:71,443,784...71,445,541
Ensembl chr 9:71,443,588...71,445,739
JBrowse link
G Tasor transcription activation suppressor IEA
ISO
GO_REF:0000107
(MGI:MGI:6109647|PMID:28839193)
Ensembl
RGD
PMID:28839193 GO_REF:0000107, MGI:MGI:6109647 NCBI chr16:3,050,506...3,108,168
Ensembl chr16:3,051,449...3,105,531
JBrowse link
G Tbx3 T-box transcription factor 3 ISO
ISS
(PMID:9207801)
GO_REF:0000024
RGD
UniProt
PMID:9207801 GO_REF:0000024 NCBI chr12:42,479,518...42,494,588
Ensembl chr12:42,480,560...42,492,526
JBrowse link
G Tcf7l1 transcription factor 7 like 1 ISO MGI:MGI:3044616 (MGI:MGI:3043490|PMID:14668413) RGD PMID:14668413 MGI:MGI:3043490 NCBI chr 4:100,492,796...100,660,401
Ensembl chr 4:100,491,798...100,660,140
JBrowse link
G Tdgf1 teratocarcinoma-derived growth factor 1 ISO MGI:MGI:1934206 (MGI:MGI:1303194|PMID:9790191) RGD PMID:9790191 MGI:MGI:1303194 NCBI chr 8:119,215,266...119,220,909
Ensembl chr 8:119,215,495...119,219,232
JBrowse link
G Wnt5a Wnt family member 5A ISO
IEA
(MGI:MGI:4835157|PMID:9054360)
GO_REF:0000107
RGD
Ensembl
PMID:9054360 GO_REF:0000107, MGI:MGI:4835157 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
JBrowse link
P granule organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pld6 phospholipase D family, member 6 ISO (MGI:MGI:4943609|PMID:21397848) RGD PMID:21397848 MGI:MGI:4943609 NCBI chr10:46,142,313...46,145,774
Ensembl chr10:46,142,801...46,145,548
JBrowse link
G Tdrd5 tudor domain containing 5 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:4946318|PMID:21383078)
Ensembl
UniProt
RGD
PMID:21383078 GO_REF:0000024, GO_REF:0000107, MGI:MGI:4946318 NCBI chr13:73,872,637...73,922,640
Ensembl chr13:73,872,621...73,921,969
JBrowse link
pole plasm assembly term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100911453 methylosome protein 50-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:208,420,223...208,430,276
Ensembl chr 2:208,420,309...208,587,260
Ensembl chr 2:208,420,309...208,587,260
JBrowse link
G Wdr77 WD repeat domain 77 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:208,577,292...208,587,263
Ensembl chr 2:208,420,309...208,587,260
JBrowse link
thorax and anterior abdomen determination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Neurog1 neurogenin 1 ISO UniProtKB:Q6ZNK6|UniProtKB:Q8TF63 (PMID:23419067) RGD PMID:23419067 NCBI chr17:9,154,656...9,156,175
Ensembl chr17:9,154,656...9,156,175
JBrowse link
G Tifab TIFA inhibitor ISO UniProtKB:Q8TF63|UniProtKB:Q92886 (PMID:23419067) RGD PMID:23419067 NCBI chr17:9,234,948...9,239,266
Ensembl chr17:9,236,249...9,239,265
JBrowse link
G Wt1 WT1 transcription factor ISO
ISS
(MGI:MGI:62488|PMID:8395349)
GO_REF:0000024
RGD
UniProt
PMID:8395349 GO_REF:0000024, MGI:MGI:62488 NCBI chr 3:95,133,221...95,180,574
Ensembl chr 3:95,133,713...95,180,564
JBrowse link
ventral trunk neural crest cell migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nrp1 neuropilin 1 ISO (MGI:MGI:3848580|PMID:19386662) RGD PMID:19386662 MGI:MGI:3848580 NCBI chr19:61,332,351...61,486,166
Ensembl chr19:61,332,351...61,485,858
JBrowse link
G Nrp2 neuropilin 2 ISO (MGI:MGI:3848580|PMID:19386662) RGD PMID:19386662 MGI:MGI:3848580 NCBI chr 9:69,496,875...69,609,802
Ensembl chr 9:69,497,121...69,612,087
JBrowse link
G Sema3a semaphorin 3A ISO (MGI:MGI:3848580|PMID:19386662) RGD PMID:19386662 MGI:MGI:3848580 NCBI chr 4:18,170,375...18,545,190
Ensembl chr 4:18,178,656...18,396,035
JBrowse link
G Sema3f semaphorin 3F ISO (MGI:MGI:3848580|PMID:19386662) RGD PMID:19386662 MGI:MGI:3848580 NCBI chr 8:116,439,996...116,469,915
Ensembl chr 8:116,437,696...116,469,915
JBrowse link
zygotic determination of anterior/posterior axis, embryo term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nckap1 NCK-associated protein 1 ISO MGI:MGI:3578145 (MGI:MGI:3701029|PMID:16831833) RGD PMID:16831833 MGI:MGI:3701029 NCBI chr 3:67,725,180...67,804,680
Ensembl chr 3:67,725,947...67,787,990
JBrowse link
G Pcsk6 proprotein convertase subtilisin/kexin type 6 ISO
IEA
MGI:MGI:2181754|MGI:MGI:97359 (MGI:MGI:1858546|PMID:10809672)
GO_REF:0000107
RGD
Ensembl
PMID:10809672 GO_REF:0000107, MGI:MGI:1858546 NCBI chr 1:126,749,508...126,947,392
Ensembl chr 1:126,749,508...126,947,392
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    multicellular organismal process 9055
      pattern specification process 496
        embryonic pattern specification 74
          blastoderm segmentation 20
            head segmentation + 0
            periodic partitioning + 0
            tripartite regional subdivision + 16
            trunk segmentation + 4
Path 2
Term Annotations click to browse term
  biological_process 20014
    developmental process 6812
      anatomical structure development 6256
        multicellular organism development 5735
          pattern specification process 496
            regionalization 392
              segmentation 108
                blastoderm segmentation 20
                  head segmentation + 0
                  periodic partitioning + 0
                  tripartite regional subdivision + 16
                  trunk segmentation + 4
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.