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ONTOLOGY REPORT - ANNOTATIONS


Term:gastrulation
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Accession:GO:0007369 term browser browse the term
Definition:A complex and coordinated series of cellular movements that occurs at the end of cleavage during embryonic development of most animals. The details of gastrulation vary from species to species, but usually result in the formation of the three primary germ layers, ectoderm, mesoderm and endoderm.
Synonyms:xref: Wikipedia:Gastrulation


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gastrulation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 ISO MGI:MGI:1857711 (MGI:MGI:1335818|PMID:10226013) RGD PMID:10226013 MGI:MGI:1335818 NCBI chr 3:44,432,476...44,539,680
Ensembl chr 3:44,432,471...44,522,930
JBrowse link
G Apln apelin IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr  X:134,856,719...134,866,210
Ensembl chr  X:134,856,726...134,866,210
JBrowse link
G Aplnr apelin receptor IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:72,540,538...72,544,183
Ensembl chr 3:72,540,538...72,544,182
JBrowse link
G Arfrp1 ADP-ribosylation factor related protein 1 ISO MGI:MGI:2159671 (MGI:MGI:2158904|PMID:11839814) RGD PMID:11839814 MGI:MGI:2158904 NCBI chr 3:176,857,667...176,865,105
Ensembl chr 3:176,859,151...176,865,103
JBrowse link
G Arid1a AT-rich interaction domain 1A ISO MGI:MGI:3796520 (MGI:MGI:3789431|PMID:18448678) RGD PMID:18448678 MGI:MGI:3789431 NCBI chr 5:151,904,687...151,977,973
Ensembl chr 5:151,904,684...151,977,636
JBrowse link
G Armc5 armadillo repeat containing 5 ISO MGI:MGI:6157645 (MGI:MGI:5913685|PMID:28911199) RGD PMID:28911199 MGI:MGI:5913685 NCBI chr 1:199,655,069...199,662,419
Ensembl chr 1:199,655,660...199,662,427
JBrowse link
G Cer1 cerberus 1, DAN family BMP antagonist ISO MGI:MGI:98658 (MGI:MGI:3776330|PMID:18241853) RGD PMID:18241853 MGI:MGI:3776330 NCBI chr 5:101,003,019...101,006,375
Ensembl chr 5:101,003,023...101,006,375
JBrowse link
G Cul3 cullin 3 ISO
IEA
MGI:MGI:2651546 (MGI:MGI:1345775|PMID:10500095)
GO_REF:0000107
RGD
Ensembl
PMID:10500095 GO_REF:0000107, MGI:MGI:1345775 NCBI chr 9:86,044,485...86,129,066
Ensembl chr 9:86,044,485...86,129,329
JBrowse link
G Dld dihydrolipoamide dehydrogenase ISO MGI:MGI:2182403 (MGI:MGI:1101694|PMID:9405644) RGD PMID:9405644 MGI:MGI:1101694 NCBI chr 6:50,597,677...50,618,694
Ensembl chr 6:50,597,677...50,618,694
JBrowse link
G Ext1 exostosin glycosyltransferase 1 ISO MGI:MGI:1888710 (MGI:MGI:1888607|PMID:10926768), (MGI:MGI:4431165|PMID:20080592) RGD PMID:10926768, PMID:20080592 MGI:MGI:1888607, MGI:MGI:4431165 NCBI chr 7:92,605,008...92,881,392
Ensembl chr 7:92,605,728...92,882,068
JBrowse link
G Hira histone cell cycle regulator ISO MGI:MGI:2178130 (MGI:MGI:2176685|PMID:11884616) RGD PMID:11884616 MGI:MGI:2176685 NCBI chr11:86,168,196...86,276,430
Ensembl chr11:86,168,196...86,276,430
JBrowse link
G Htt huntingtin ISO MGI:MGI:1857180|MGI:MGI:1857722|MGI:MGI:2177743 (MGI:MGI:73644|PMID:7774020), (MGI:MGI:74603|PMID:7618107), (MGI:MGI:76798|PMID:7550343) RGD PMID:7550343, PMID:7618107, PMID:7774020 MGI:MGI:73644, MGI:MGI:74603, MGI:MGI:76798 NCBI chr14:81,105,139...81,254,637
Ensembl chr14:81,105,139...81,254,637
JBrowse link
G LOC100910829 probable N-acetyltransferase CML2-like IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:117,566,557...117,569,126
Ensembl chr 4:117,567,668...117,568,348
JBrowse link
G LOC100911372 40S ribosomal protein S6-like IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 5:105,209,844...105,212,791
Ensembl chr 5:105,209,846...105,212,173
JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 ISO (PMID:8787751) RGD PMID:8787751 NCBI chr 1:141,532,390...141,533,908
Ensembl chr 1:141,532,390...141,533,908
JBrowse link
G Mixl1 Mix paired-like homeobox 1 ISO MGI:MGI:2387828 (MGI:MGI:2181739|PMID:12117810) RGD PMID:12117810 MGI:MGI:2181739 NCBI chr13:97,278,258...97,282,299
Ensembl chr13:98,973,041...98,975,426
Ensembl chr13:98,973,041...98,975,426
JBrowse link
G Nat8f2 N-acetyltransferase 8 (GCN5-related) family member 2 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:117,749,538...117,752,107
Ensembl chr 4:117,750,649...117,751,329
JBrowse link
G Nodal nodal growth differentiation factor ISO MGI:MGI:2158732 (MGI:MGI:2155575|PMID:11311163), (MGI:MGI:2677178|PMID:14511481) RGD PMID:11311163, PMID:14511481 MGI:MGI:2155575, MGI:MGI:2677178 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096
JBrowse link
G Nr4a3 nuclear receptor subfamily 4, group A, member 3 ISO
ISS
(MGI:MGI:3042044|PMID:13129926)
GO_REF:0000024
RGD
UniProt
PMID:13129926 GO_REF:0000024, MGI:MGI:3042044 NCBI chr 5:63,781,801...63,822,890
Ensembl chr 5:63,781,801...63,821,637
JBrowse link
G Poglut1 protein O-glucosyltransferase 1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr11:64,761,493...64,788,210
Ensembl chr11:64,761,146...64,788,208
JBrowse link
G Rack1 receptor for activated C kinase 1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:34,149,717...34,155,198
Ensembl chr10:34,149,717...34,155,198
Ensembl chr12:34,149,717...34,155,198
JBrowse link
G Ric8a RIC8 guanine nucleotide exchange factor A ISO MGI:MGI:3608888 (MGI:MGI:4849883|PMID:21069829) RGD PMID:21069829 MGI:MGI:4849883 NCBI chr 1:213,606,599...213,612,905
Ensembl chr 1:213,606,599...213,612,904
JBrowse link
G Rps6 ribosomal protein S6 ISO
IEA
MGI:MGI:2387471|MGI:MGI:98834 (MGI:MGI:3696931|PMID:17000767)
GO_REF:0000107
RGD
Ensembl
PMID:17000767 GO_REF:0000107, MGI:MGI:3696931 NCBI chr 5:105,197,821...105,200,681
Ensembl chr 5:105,197,857...105,200,148
JBrowse link
G Smad2 SMAD family member 2 ISO MGI:MGI:1201674 (MGI:MGI:3618021|PMID:15183723) RGD PMID:15183723 MGI:MGI:3618021 NCBI chr18:72,550,107...72,612,078
Ensembl chr18:72,550,219...72,612,078
JBrowse link
G Smad3 SMAD family member 3 ISO MGI:MGI:108051 (MGI:MGI:3618021|PMID:15183723) RGD PMID:15183723 MGI:MGI:3618021 NCBI chr 8:68,569,530...68,678,349
Ensembl chr 8:68,569,530...68,678,349
JBrowse link
G Smad4 SMAD family member 4 ISO MGI:MGI:1858049 (MGI:MGI:1195384|PMID:9420335) RGD PMID:9420335 MGI:MGI:1195384 NCBI chr18:69,626,682...69,657,373
Ensembl chr18:69,627,757...69,671,199
JBrowse link
G Sox17 SRY-box transcription factor 17 ISO MGI:MGI:3717118 (MGI:MGI:4422111|PMID:20123909) RGD PMID:20123909 MGI:MGI:4422111 NCBI chr 5:14,890,318...14,895,907
Ensembl chr 5:14,890,408...14,895,907
JBrowse link
G Srf serum response factor ISO MGI:MGI:2158696 (MGI:MGI:1312998|PMID:9799237) RGD PMID:9799237 MGI:MGI:1312998 NCBI chr 9:16,737,637...16,747,226
Ensembl chr 9:16,737,642...16,747,225
JBrowse link
G Supt20h SPT20 homolog, SAGA complex component IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 2:143,892,609...143,925,733
Ensembl chr 2:143,892,567...143,925,633
JBrowse link
G Syf2 SYF2 pre-mRNA-splicing factor ISO MGI:MGI:3904866 (MGI:MGI:5435138|PMID:22448250) RGD PMID:22448250 MGI:MGI:5435138 NCBI chr 5:153,269,638...153,277,562
Ensembl chr 5:153,269,526...153,277,563
JBrowse link
G Tcf3 transcription factor 3 ISO UniProtKB:A4IIL6 (MGI:MGI:5574293|PMID:21828274) RGD PMID:21828274 MGI:MGI:5574293 NCBI chr 7:12,146,642...12,168,400
Ensembl chr 7:12,144,162...12,168,410
JBrowse link
G Tdgf1 teratocarcinoma-derived growth factor 1 ISO MGI:MGI:1201414 (MGI:MGI:3776330|PMID:18241853) RGD PMID:18241853 MGI:MGI:3776330 NCBI chr 8:119,215,266...119,220,909
Ensembl chr 8:119,215,495...119,219,232
JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 ISO (MGI:MGI:1329756|PMID:10030593) RGD PMID:10030593 MGI:MGI:1329756 NCBI chr 8:124,310,288...124,399,345
Ensembl chr 8:124,312,754...124,399,494
JBrowse link
G Tp53 tumor protein p53 ISO MGI:MGI:98159 (MGI:MGI:3696931|PMID:17000767) RGD PMID:17000767 MGI:MGI:3696931 NCBI chr10:56,186,299...56,198,449
Ensembl chr10:56,187,020...56,198,449
JBrowse link
G Txnrd1 thioredoxin reductase 1 ISO MGI:MGI:3722092 (MGI:MGI:3721365|PMID:17697936) RGD PMID:17697936 MGI:MGI:3721365 NCBI chr 7:26,946,124...26,984,400
Ensembl chr 7:26,946,125...26,984,400
JBrowse link
axial mesoderm formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin1 axin 1 ISO MGI:MGI:1857546 (MGI:MGI:894149|PMID:9230313) RGD PMID:9230313 MGI:MGI:894149
G Epha2 Eph receptor A2 ISO MGI:MGI:2448472 (MGI:MGI:1934524|PMID:11287184) RGD PMID:11287184 MGI:MGI:1934524 NCBI chr 5:159,845,773...159,874,203
Ensembl chr 5:159,845,774...159,874,206
JBrowse link
axial mesodermal cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nodal nodal growth differentiation factor ISO (MGI:MGI:2677178|PMID:14511481) RGD PMID:14511481 MGI:MGI:2677178 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096
JBrowse link
BMP signaling pathway involved in mesodermal cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Etv2 ETS variant transcription factor 2 ISO (MGI:MGI:4415813|PMID:18462699) RGD PMID:18462699 MGI:MGI:4415813 NCBI chr 1:89,091,239...89,094,570
Ensembl chr 1:89,091,239...89,094,530
JBrowse link
cell fate commitment involved in formation of primary germ layer term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pou5f1 POU class 5 homeobox 1 ISO (PMID:19736317) RGD PMID:19736317 NCBI chr20:3,747,231...3,751,994
Ensembl chr20:3,747,221...3,751,994
JBrowse link
cell migration involved in gastrulation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amot angiomotin ISO MGI:MGI:2656627 (MGI:MGI:2655854|PMID:12676095) RGD PMID:12676095 MGI:MGI:2655854 NCBI chr  X:116,751,231...116,810,238
Ensembl chr  X:116,751,230...116,792,864
JBrowse link
G Cer1 cerberus 1, DAN family BMP antagonist ISO MGI:MGI:107405 (MGI:MGI:3042338|PMID:15004567) RGD PMID:15004567 MGI:MGI:3042338 NCBI chr 5:101,003,019...101,006,375
Ensembl chr 5:101,003,023...101,006,375
JBrowse link
G Gpc3 glypican 3 ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr  X:139,579,268...139,947,093
Ensembl chr  X:139,579,268...139,916,883
JBrowse link
G Lefty1 left right determination factor 1 ISO MGI:MGI:1201414 (MGI:MGI:3042338|PMID:15004567) RGD PMID:15004567 MGI:MGI:3042338 NCBI chr13:99,212,778...99,217,786
Ensembl chr13:99,214,389...99,217,786
JBrowse link
G Lrp5 LDL receptor related protein 5 ISO MGI:MGI:1298218 (MGI:MGI:3045836|PMID:15142971) RGD PMID:15142971 MGI:MGI:3045836 NCBI chr 1:218,816,833...218,920,147
Ensembl chr 1:218,816,841...218,920,094
JBrowse link
G Lrp6 LDL receptor related protein 6 ISO MGI:MGI:1278315 (MGI:MGI:3045836|PMID:15142971) RGD PMID:15142971 MGI:MGI:3045836 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
G Megf8 multiple EGF-like-domains 8 IEA
ISO
GO_REF:0000107
(PMID:23063620)
Ensembl
RGD
PMID:23063620 GO_REF:0000107 NCBI chr 1:82,184,671...82,234,045
Ensembl chr 1:82,185,034...82,234,045
JBrowse link
G Mixl1 Mix paired-like homeobox 1 ISO MGI:MGI:2387829 (MGI:MGI:3695524|PMID:17151016) RGD PMID:17151016 MGI:MGI:3695524 NCBI chr13:97,278,258...97,282,299
Ensembl chr13:98,973,041...98,975,426
Ensembl chr13:98,973,041...98,975,426
JBrowse link
G Nckap1 NCK-associated protein 1 ISO MGI:MGI:3578145 (MGI:MGI:3701029|PMID:16831833) RGD PMID:16831833 MGI:MGI:3701029 NCBI chr 3:67,725,180...67,804,680
Ensembl chr 3:67,725,947...67,787,990
JBrowse link
G Nodal nodal growth differentiation factor ISO (MGI:MGI:3042338|PMID:15004567) RGD PMID:15004567 MGI:MGI:3042338 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096
JBrowse link
G Ric8a RIC8 guanine nucleotide exchange factor A ISO
IEA
MGI:MGI:3608888 (MGI:MGI:4849883|PMID:21069829)
GO_REF:0000107
RGD
Ensembl
PMID:21069829 GO_REF:0000107, MGI:MGI:4849883 NCBI chr 1:213,606,599...213,612,905
Ensembl chr 1:213,606,599...213,612,904
JBrowse link
G Sox17 SRY-box transcription factor 17 ISO MGI:MGI:3717121 (MGI:MGI:4946462|PMID:21146513) RGD PMID:21146513 MGI:MGI:4946462 NCBI chr 5:14,890,318...14,895,907
Ensembl chr 5:14,890,408...14,895,907
JBrowse link
cell migration involved in mesendoderm migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 ISO MGI:MGI:2150346 (MGI:MGI:1341493|PMID:10421635) RGD PMID:10421635 MGI:MGI:1341493 NCBI chr 1:265,492,949...265,498,965
Ensembl chr 1:265,493,124...265,498,831
JBrowse link
cell-cell adhesion involved in gastrulation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ric8a RIC8 guanine nucleotide exchange factor A ISO
IEA
MGI:MGI:3608888 (MGI:MGI:4849883|PMID:21069829)
GO_REF:0000107
RGD
Ensembl
PMID:21069829 GO_REF:0000107, MGI:MGI:4849883 NCBI chr 1:213,606,599...213,612,905
Ensembl chr 1:213,606,599...213,612,904
JBrowse link
convergent extension involved in gastrulation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nphp3 nephrocystin 3 ISO UniProtKB:Q6AZT7 (PMID:18371931) RGD PMID:18371931 NCBI chr 8:112,526,553...112,575,745
Ensembl chr 8:112,526,553...112,575,745
JBrowse link
convergent extension involved in neural plate elongation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dvl1 dishevelled segment polarity protein 1 ISO MGI:MGI:106613 (MGI:MGI:3624185|PMID:16571627) RGD PMID:16571627 MGI:MGI:3624185 NCBI chr 5:173,295,948...173,308,014
Ensembl chr 5:173,296,270...173,307,945
JBrowse link
G Dvl2 dishevelled segment polarity protein 2 ISO MGI:MGI:2135272|MGI:MGI:2429760|MGI:MGI:94941 (MGI:MGI:3624185|PMID:16571627) RGD PMID:16571627 MGI:MGI:3624185 NCBI chr10:56,609,810...56,619,269
Ensembl chr10:56,610,051...56,619,269
JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 ISO MGI:MGI:106613|MGI:MGI:1857642 (MGI:MGI:3624185|PMID:16571627), (MGI:MGI:3703464|PMID:17229766) RGD PMID:16571627, PMID:17229766 MGI:MGI:3624185, MGI:MGI:3703464 NCBI chr13:90,379,203...90,405,627
Ensembl chr13:90,380,632...90,405,591
JBrowse link
convergent extension involved in somitogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sfrp1 secreted frizzled-related protein 1 ISO
IEA
MGI:MGI:108078|MGI:MGI:1860298 (MGI:MGI:3793375|PMID:18257070)
GO_REF:0000107
RGD
Ensembl
PMID:18257070 GO_REF:0000107, MGI:MGI:3793375 NCBI chr16:73,372,007...73,410,777
Ensembl chr16:73,372,007...73,410,777
JBrowse link
ectoderm formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxa2 forkhead box A2 ISO MGI:MGI:99783 (MGI:MGI:1344734|PMID:10498685) RGD PMID:10498685 MGI:MGI:1344734 NCBI chr 3:142,383,084...142,387,493
Ensembl chr 3:142,383,278...142,387,481
JBrowse link
G Lhx1 LIM homeobox 1 ISO
ISS
MGI:MGI:1347476 (MGI:MGI:1344734|PMID:10498685)
GO_REF:0000024
RGD
UniProt
PMID:10498685 GO_REF:0000024, MGI:MGI:1344734 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293
JBrowse link
ectodermal cell fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elf5 E74 like ETS transcription factor 5 ISO MGI:MGI:95456 (MGI:MGI:5616945|PMID:25446535) RGD PMID:25446535 MGI:MGI:5616945 NCBI chr 3:93,333,514...93,374,454
Ensembl chr 3:93,351,619...93,371,656
JBrowse link
G Ets2 ETS proto-oncogene 2, transcription factor ISO MGI:MGI:1335079 (MGI:MGI:5616945|PMID:25446535) RGD PMID:25446535 MGI:MGI:5616945 NCBI chr11:36,075,709...36,092,495
Ensembl chr11:36,075,709...36,092,495
JBrowse link
G Pou5f1 POU class 5 homeobox 1 ISO (MGI:MGI:1355046|PMID:10742100) RGD PMID:10742100 MGI:MGI:1355046 NCBI chr20:3,747,231...3,751,994
Ensembl chr20:3,747,221...3,751,994
JBrowse link
endoderm formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 ISO MGI:MGI:1858007|MGI:MGI:2148567|MGI:MGI:4418897 (MGI:MGI:3625553|PMID:12194849), (MGI:MGI:5498579|PMID:23824574) RGD PMID:12194849, PMID:23824574 MGI:MGI:3625553, MGI:MGI:5498579 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 ISO (MGI:MGI:4415813|PMID:18462699) RGD PMID:18462699 MGI:MGI:4415813 NCBI chr 1:248,952,896...248,956,579
Ensembl chr 1:248,895,738...248,898,607
JBrowse link
G Dusp1 dual specificity phosphatase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:16,970,642...16,973,425
Ensembl chr10:16,970,626...16,973,418
JBrowse link
G Dusp2 dual specificity phosphatase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:119,776,925...119,779,110
Ensembl chr 3:119,776,925...119,779,099
JBrowse link
G Dusp4 dual specificity phosphatase 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:61,080,767...61,090,973
Ensembl chr16:61,078,175...61,091,169
JBrowse link
G Dusp5 dual specificity phosphatase 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:274,245,184...274,258,595
Ensembl chr 1:274,245,184...274,258,595
JBrowse link
G Eomes eomesodermin ISO MGI:MGI:3774028 (MGI:MGI:3772748|PMID:18171685), (MGI:MGI:4887279|PMID:21245162), (MGI:MGI:5293253|PMID:21822279) RGD PMID:18171685, PMID:21245162, PMID:21822279 MGI:MGI:3772748, MGI:MGI:4887279, MGI:MGI:5293253 NCBI chr 8:127,144,367...127,152,618
Ensembl chr 8:127,144,903...127,151,493
JBrowse link
G Gata4 GATA binding protein 4 ISO MGI:MGI:2179511 (MGI:MGI:77407|PMID:8582296) RGD PMID:8582296 MGI:MGI:77407 NCBI chr15:46,386,703...46,458,679
Ensembl chr15:46,386,712...46,432,965
JBrowse link
G Lhx1 LIM homeobox 1 ISO
ISS
MGI:MGI:1857848 (MGI:MGI:3487194|PMID:15355796)
GO_REF:0000024
RGD
UniProt
PMID:15355796 GO_REF:0000024, MGI:MGI:3487194 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293
JBrowse link
G Mixl1 Mix paired-like homeobox 1 ISO MGI:MGI:2387829 (MGI:MGI:3695524|PMID:17151016) RGD PMID:17151016 MGI:MGI:3695524 NCBI chr13:97,278,258...97,282,299
Ensembl chr13:98,973,041...98,975,426
Ensembl chr13:98,973,041...98,975,426
JBrowse link
G Nog noggin ISO
IEA
(MGI:MGI:4415813|PMID:18462699)
GO_REF:0000107
RGD
Ensembl
PMID:18462699 GO_REF:0000107, MGI:MGI:4415813 NCBI chr10:76,811,759...76,813,386
Ensembl chr10:76,811,759...76,813,386
JBrowse link
G Smad2 SMAD family member 2 ISO (MGI:MGI:5293253|PMID:21822279) RGD PMID:21822279 MGI:MGI:5293253 NCBI chr18:72,550,107...72,612,078
Ensembl chr18:72,550,219...72,612,078
JBrowse link
G Sox17 SRY-box transcription factor 17 ISO (PMID:18682240) RGD PMID:18682240 NCBI chr 5:14,890,318...14,895,907
Ensembl chr 5:14,890,408...14,895,907
JBrowse link
G Sox7 SRY-box transcription factor 7 ISO (PMID:18682240) RGD PMID:18682240 NCBI chr15:47,293,699...47,300,460
Ensembl chr15:47,293,699...47,300,460
JBrowse link
G Tnrc6c trinucleotide repeat containing adaptor 6C ISO MGI:MGI:4124681 (MGI:MGI:5315650|PMID:22187428) RGD PMID:22187428 MGI:MGI:5315650 NCBI chr10:106,698,359...106,763,639
Ensembl chr10:106,712,127...106,762,043
JBrowse link
endodermal cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col11a1 collagen type XI alpha 1 chain ISO (PMID:23154389) RGD PMID:23154389 NCBI chr 2:216,863,423...217,056,523
Ensembl chr 2:216,863,428...217,056,523
JBrowse link
G Col12a1 collagen type XII alpha 1 chain IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(PMID:23154389)
Ensembl
RGD
PMID:23154389, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 8:87,042,820...87,150,701
Ensembl chr 8:87,040,799...87,158,368
JBrowse link
G Col4a2 collagen type IV alpha 2 chain ISO (PMID:23154389) RGD PMID:23154389 NCBI chr16:83,386,388...83,522,169
Ensembl chr16:83,387,364...83,438,561
JBrowse link
G Col6a1 collagen type VI alpha 1 chain ISO (PMID:23154389) RGD PMID:23154389 NCBI chr20:12,657,913...12,676,370
Ensembl chr20:12,658,065...12,675,561
JBrowse link
G Col7a1 collagen type VII alpha 1 chain ISO (PMID:23154389) RGD PMID:23154389 NCBI chr 8:117,694,441...117,726,844
Ensembl chr 8:117,694,605...117,726,844
JBrowse link
G Col8a1 collagen type VIII alpha 1 chain ISO (PMID:23154389) RGD PMID:23154389 NCBI chr11:44,877,690...45,006,203
Ensembl chr11:44,877,859...45,007,891
JBrowse link
G Fn1 fibronectin 1 IEA
ISO
GO_REF:0000107
(PMID:23154389)
Ensembl
RGD
PMID:23154389 GO_REF:0000107 NCBI chr 9:78,900,111...78,969,018
Ensembl chr 9:78,900,103...78,969,078
JBrowse link
G Gata6 GATA binding protein 6 ISO MGI:MGI:2177785 (MGI:MGI:1315079|PMID:9832509) RGD PMID:9832509 MGI:MGI:1315079 NCBI chr18:2,415,821...2,447,087
Ensembl chr18:2,416,552...2,446,338
JBrowse link
G Hmga2 high mobility group AT-hook 2 ISO
ISS
(PMID:17624332)
GO_REF:0000024
RGD
UniProt
PMID:17624332 GO_REF:0000024 NCBI chr 7:65,159,944...65,275,408
Ensembl chr 7:65,159,944...65,275,408
JBrowse link
G Hsbp1 heat shock factor binding protein 1 ISO (MGI:MGI:5553204|PMID:24380799) RGD PMID:24380799 MGI:MGI:5553204 NCBI chr19:51,985,196...51,989,528
Ensembl chr19:51,985,170...51,989,544
JBrowse link
G Inhba inhibin subunit beta A ISO (PMID:21828274) RGD PMID:21828274 NCBI chr17:51,894,869...51,919,998
Ensembl chr17:51,898,217...51,912,496
JBrowse link
G Itga4 integrin subunit alpha 4 ISO (PMID:23154389) RGD PMID:23154389 NCBI chr 3:66,178,745...66,265,547
Ensembl chr 3:66,193,059...66,263,960
JBrowse link
G Itga5 integrin subunit alpha 5 ISO (PMID:23154389) RGD PMID:23154389 NCBI chr 7:144,970,444...144,993,652
Ensembl chr 7:144,970,444...144,993,652
JBrowse link
G Itga7 integrin subunit alpha 7 IEA
ISO
GO_REF:0000107
(PMID:23154389)
Ensembl
RGD
PMID:23154389 GO_REF:0000107 NCBI chr 7:3,355,079...3,383,886
Ensembl chr 7:3,355,116...3,384,675
JBrowse link
G Itgav integrin subunit alpha V ISO (PMID:23154389) RGD PMID:23154389 NCBI chr 3:71,113,269...71,205,958
Ensembl chr 3:71,114,100...71,202,411
JBrowse link
G Itgb2 integrin subunit beta 2 ISO (PMID:23154389) RGD PMID:23154389 NCBI chr20:11,777,773...11,815,647
Ensembl chr20:11,777,783...11,815,647
JBrowse link
G Itgb5 integrin subunit beta 5 ISO (PMID:23154389) RGD PMID:23154389 NCBI chr11:70,056,500...70,172,164
Ensembl chr11:70,056,500...70,172,372
JBrowse link
G Lama3 laminin subunit alpha 3 ISO (PMID:23154389) RGD PMID:23154389 NCBI chr18:3,704,866...3,941,215
Ensembl chr18:3,705,916...3,940,838
JBrowse link
G Lamb1 laminin subunit beta 1 ISO (PMID:23154389) RGD PMID:23154389 NCBI chr 6:50,528,796...50,596,593
Ensembl chr 6:50,528,823...50,596,079
JBrowse link
G Lamb3 laminin subunit beta 3 ISO (PMID:23154389) RGD PMID:23154389 NCBI chr13:112,031,614...112,073,187
Ensembl chr13:112,031,594...112,073,186
JBrowse link
G Mixl1 Mix paired-like homeobox 1 ISO (MGI:MGI:5447921|PMID:19038793) RGD PMID:19038793 MGI:MGI:5447921 NCBI chr13:97,278,258...97,282,299
Ensembl chr13:98,973,041...98,975,426
Ensembl chr13:98,973,041...98,975,426
JBrowse link
G Mmp14 matrix metallopeptidase 14 ISO (PMID:23154389) RGD PMID:23154389 NCBI chr15:33,074,441...33,083,666
Ensembl chr15:33,074,441...33,083,655
JBrowse link
G Mmp15 matrix metallopeptidase 15 ISO (PMID:23154389) RGD PMID:23154389 NCBI chr19:10,079,881...10,101,380
Ensembl chr19:10,079,765...10,101,451
JBrowse link
G Mmp2 matrix metallopeptidase 2 IEA
ISO
GO_REF:0000107
(PMID:23154389)
Ensembl
RGD
PMID:23154389 GO_REF:0000107 NCBI chr19:15,542,771...15,570,589
Ensembl chr19:15,542,765...15,570,611
JBrowse link
G Mmp8 matrix metallopeptidase 8 IEA
ISO
GO_REF:0000107
(PMID:23154389)
Ensembl
RGD
PMID:23154389 GO_REF:0000107 NCBI chr 8:5,768,808...5,777,741
Ensembl chr 8:5,768,811...5,778,702
JBrowse link
G Mmp9 matrix metallopeptidase 9 IEA
ISO
GO_REF:0000107
(PMID:23154389)
Ensembl
RGD
PMID:23154389 GO_REF:0000107 NCBI chr 3:161,413,410...161,421,473
Ensembl chr 3:161,413,298...161,421,520
JBrowse link
G Nodal nodal growth differentiation factor ISO (PMID:21741376) RGD PMID:21741376 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096
JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase ISO (MGI:MGI:5908786|PMID:25242323) RGD PMID:25242323 MGI:MGI:5908786 NCBI chr 8:118,802,478...118,888,224
Ensembl chr 8:118,803,075...118,888,224
JBrowse link
G Vtn vitronectin ISO (PMID:23154389) RGD PMID:23154389 NCBI chr10:65,767,960...65,771,040
Ensembl chr10:65,767,053...65,771,038
JBrowse link
endodermal cell fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc73 cell division cycle 73 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:3849235|PMID:19345177)
Ensembl
UniProt
RGD
PMID:19345177 GO_REF:0000024, GO_REF:0000107, MGI:MGI:3849235 NCBI chr13:60,403,771...60,496,511
Ensembl chr13:60,403,771...60,496,511
JBrowse link
G Ctnnb1 catenin beta 1 ISO
IEA
MGI:MGI:1858007|MGI:MGI:2148567 (MGI:MGI:3625553|PMID:12194849)
GO_REF:0000107
RGD
Ensembl
PMID:12194849 GO_REF:0000107, MGI:MGI:3625553 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component ISO (MGI:MGI:3849235|PMID:19345177) RGD PMID:19345177 MGI:MGI:3849235 NCBI chr 1:175,839,140...175,869,167
Ensembl chr 1:175,839,108...175,869,165
JBrowse link
G Leo1 LEO1 homolog, Paf1/RNA polymerase II complex component ISO
ISS
(MGI:MGI:3849235|PMID:19345177)
GO_REF:0000024
RGD
UniProt
PMID:19345177 GO_REF:0000024, MGI:MGI:3849235 NCBI chr 8:82,380,906...82,405,293
Ensembl chr 8:82,380,757...82,405,644
JBrowse link
G Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component ISO
ISS
(MGI:MGI:3849235|PMID:19345177)
GO_REF:0000024
RGD
UniProt
PMID:19345177 GO_REF:0000024, MGI:MGI:3849235 NCBI chr 1:85,362,421...85,367,999
Ensembl chr 1:85,362,268...85,368,031
JBrowse link
G Pou5f1 POU class 5 homeobox 1 ISO (MGI:MGI:1355046|PMID:10742100) RGD PMID:10742100 MGI:MGI:1355046 NCBI chr20:3,747,231...3,751,994
Ensembl chr20:3,747,221...3,751,994
JBrowse link
G Rtf1 Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) ISO (MGI:MGI:3849235|PMID:19345177) RGD PMID:19345177 MGI:MGI:3849235 NCBI chr 3:111,478,350...111,537,941
Ensembl chr 3:111,478,382...111,537,941
JBrowse link
endodermal cell fate determination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata6 GATA binding protein 6 ISO
IEA
(MGI:MGI:4442295|PMID:20308546)
GO_REF:0000107
RGD
Ensembl
PMID:20308546 GO_REF:0000107, MGI:MGI:4442295 NCBI chr18:2,415,821...2,447,087
Ensembl chr18:2,416,552...2,446,338
JBrowse link
G Sox17 SRY-box transcription factor 17 ISO (MGI:MGI:4442295|PMID:20308546) RGD PMID:20308546 MGI:MGI:4442295 NCBI chr 5:14,890,318...14,895,907
Ensembl chr 5:14,890,408...14,895,907
JBrowse link
endodermal cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eomes eomesodermin ISO
IBA
MGI:MGI:3774028 (MGI:MGI:4887279|PMID:21245162)
PMID:21873635
RGD PMID:21245162, PMID:21873635 MGI:MGI:4887279, RGD:13792537 NCBI chr 8:127,144,367...127,152,618
Ensembl chr 8:127,144,903...127,151,493
JBrowse link
G Hnf1b HNF1 homeobox B ISO MGI:MGI:1857856 (MGI:MGI:3807614|PMID:18635606) RGD PMID:18635606 MGI:MGI:3807614 NCBI chr10:71,159,863...71,218,902
Ensembl chr10:71,159,869...71,218,902
JBrowse link
G Nanog Nanog homeobox ISO (PMID:20713518) RGD PMID:20713518 NCBI chr 4:155,531,906...155,539,268
Ensembl chr 4:155,531,906...155,539,268
JBrowse link
G Pou5f1 POU class 5 homeobox 1 ISO (PMID:20713518) RGD PMID:20713518 NCBI chr20:3,747,231...3,751,994
Ensembl chr20:3,747,221...3,751,994
JBrowse link
G Sox2 SRY-box transcription factor 2 ISO (PMID:21245162) RGD PMID:21245162 NCBI chr 2:121,165,137...121,167,545
Ensembl chr 2:121,165,137...121,167,545
JBrowse link
epiboly involved in gastrulation with mouth forming second term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Megf8 multiple EGF-like-domains 8 IEA
ISO
GO_REF:0000107
(PMID:23063620)
Ensembl
RGD
PMID:23063620 GO_REF:0000107 NCBI chr 1:82,184,671...82,234,045
Ensembl chr 1:82,185,034...82,234,045
JBrowse link
formation of primary germ layer term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid1a AT-rich interaction domain 1A ISO MGI:MGI:3796520 (MGI:MGI:3789431|PMID:18448678) RGD PMID:18448678 MGI:MGI:3789431 NCBI chr 5:151,904,687...151,977,973
Ensembl chr 5:151,904,684...151,977,636
JBrowse link
G Atoh8 atonal bHLH transcription factor 8 ISO (MGI:MGI:3798332|PMID:18560595) RGD PMID:18560595 MGI:MGI:3798332 NCBI chr 4:100,067,341...100,099,517
Ensembl chr 4:100,067,341...100,099,517
JBrowse link
G Kif16b kinesin family member 16B ISO (MGI:MGI:4889011|PMID:21238925) RGD PMID:21238925 MGI:MGI:4889011 NCBI chr 3:136,596,621...136,936,809
Ensembl chr 3:136,657,480...136,936,674
JBrowse link
gastrulation with mouth forming second term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07034833.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr12:53,872...54,885 JBrowse link
G AABR07071701.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 8:126,975,833...126,976,850 JBrowse link
G Acvr1 activin A receptor type 1 ISO
IEA
MGI:MGI:1931734|MGI:MGI:3696672 (MGI:MGI:3695845|PMID:17117439)
GO_REF:0000107
RGD
Ensembl
PMID:17117439 GO_REF:0000107, MGI:MGI:3695845 NCBI chr 3:44,432,476...44,539,680
Ensembl chr 3:44,432,471...44,522,930
JBrowse link
G Acvr2a activin A receptor type 2A ISO
IEA
MGI:MGI:1857709|MGI:MGI:2179547 (MGI:MGI:1344152|PMID:10452853)
GO_REF:0000107
RGD
Ensembl
PMID:10452853 GO_REF:0000107, MGI:MGI:1344152 NCBI chr 3:32,947,901...33,034,598
Ensembl chr 3:32,947,378...33,034,282
JBrowse link
G Acvr2b activin A receptor type 2B ISO
IEA
MGI:MGI:1857709|MGI:MGI:2179547 (MGI:MGI:1344152|PMID:10452853)
GO_REF:0000107
RGD
Ensembl
PMID:10452853 GO_REF:0000107, MGI:MGI:1344152 NCBI chr 8:128,087,308...128,126,776
Ensembl chr 8:128,087,345...128,118,746
JBrowse link
G Amot angiomotin ISO MGI:MGI:2656627 (MGI:MGI:2655854|PMID:12676095) RGD PMID:12676095 MGI:MGI:2655854 NCBI chr  X:116,751,231...116,810,238
Ensembl chr  X:116,751,230...116,792,864
JBrowse link
G Chrd chordin ISO
IEA
MGI:MGI:2157350 (MGI:MGI:2662951|PMID:12810603)
GO_REF:0000107
RGD
Ensembl
PMID:12810603 GO_REF:0000107, MGI:MGI:2662951 NCBI chr11:83,858,503...83,867,543
Ensembl chr11:83,858,503...83,867,203
JBrowse link
G Ctnnb1 catenin beta 1 ISO
IEA
MGI:MGI:1857678 (MGI:MGI:77405|PMID:8582267)
GO_REF:0000107
RGD
Ensembl
PMID:8582267 GO_REF:0000107, MGI:MGI:77405 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Dact1 dishevelled-binding antagonist of beta-catenin 1 ISO MGI:MGI:4360072 (MGI:MGI:4359544|PMID:19701191) RGD PMID:19701191 MGI:MGI:4359544 NCBI chr 6:93,740,440...93,751,003
Ensembl chr 6:93,740,586...93,749,809
JBrowse link
G Frs2 fibroblast growth factor receptor substrate 2 ISO MGI:MGI:3580390 (MGI:MGI:3580203|PMID:15870281) RGD PMID:15870281 MGI:MGI:3580203 NCBI chr 7:60,128,506...60,210,482
Ensembl chr 7:60,128,508...60,210,518
JBrowse link
G Gata4 GATA binding protein 4 ISO MGI:MGI:2179443 (MGI:MGI:87489|PMID:9136933) RGD PMID:9136933 MGI:MGI:87489 NCBI chr15:46,386,703...46,458,679
Ensembl chr15:46,386,712...46,432,965
JBrowse link
G Ldb1 LIM domain binding 1 ISO MGI:MGI:2449177 (MGI:MGI:2448170|PMID:12490556) RGD PMID:12490556 MGI:MGI:2448170 NCBI chr 1:265,772,729...265,798,442
Ensembl chr 1:265,785,409...265,798,167
JBrowse link
G Lhx1 LIM homeobox 1 ISO
ISS
MGI:MGI:1857848 (MGI:MGI:3487194|PMID:15355796)
GO_REF:0000024
RGD
UniProt
PMID:15355796 GO_REF:0000024, MGI:MGI:3487194 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293
JBrowse link
G LOC102554748 nidogen-2-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:380,313...427,615
Ensembl chr 7:380,741...381,732
JBrowse link
G LOC103690139 probable N-acetyltransferase CML6 NAS PMID:11397015 UniProt PMID:11397015 RGD:632468 NCBI chr 4:117,788,998...117,793,806
Ensembl chr 4:117,606,022...117,607,428
Ensembl chr 4:117,606,022...117,607,428
JBrowse link
G Lrp5 LDL receptor related protein 5 ISO
IBA
MGI:MGI:1298218 (MGI:MGI:3045836|PMID:15142971)
PMID:21873635
RGD PMID:15142971, PMID:21873635 MGI:MGI:3045836, RGD:13792537 NCBI chr 1:218,816,833...218,920,147
Ensembl chr 1:218,816,841...218,920,094
JBrowse link
G Lrp6 LDL receptor related protein 6 ISO
IBA
MGI:MGI:1278315 (MGI:MGI:3045836|PMID:15142971)
PMID:21873635
RGD PMID:15142971, PMID:21873635 MGI:MGI:3045836, RGD:13792537 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
G Nat8 N-acetyltransferase 8 ISO
ISS
(MGI:MGI:2135831|PMID:11397015)
GO_REF:0000024
RGD
UniProt
PMID:11397015 GO_REF:0000024, MGI:MGI:2135831 NCBI chr 4:117,525,963...117,527,443 JBrowse link
G Nat8b N-acetyltransferase 8B NAS PMID:11397015 UniProt PMID:11397015 RGD:632468 NCBI chr 4:117,606,022...117,607,366
Ensembl chr 4:117,606,022...117,607,428
JBrowse link
G Nat8f1 N-acetyltransferase 8 (GCN5-related) family member 1 NAS PMID:11397015 UniProt PMID:11397015 RGD:632468 NCBI chr 4:117,582,779...117,589,464
Ensembl chr 4:117,582,781...117,589,464
JBrowse link
G Nat8f3 N-acetyltransferase 8 (GCN5-related) family member 3 NAS PMID:11397015 UniProt PMID:11397015 RGD:632468 NCBI chr 4:117,488,089...117,492,315
Ensembl chr 4:117,490,035...117,490,721
JBrowse link
G Nat8f5 N-acetyltransferase 8 (GCN5-related) family member 5 NAS PMID:11397015 UniProt PMID:11397015 RGD:632468 NCBI chr 4:117,506,731...117,531,480
Ensembl chr 4:117,506,732...117,531,480
JBrowse link
G Nodal nodal growth differentiation factor ISO MGI:MGI:1856970 (MGI:MGI:3701544|PMID:14607953) RGD PMID:14607953 MGI:MGI:3701544 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096
JBrowse link
G Nsd1 nuclear receptor binding SET domain protein 1 ISO MGI:MGI:2667262 (MGI:MGI:2664413|PMID:12805229) RGD PMID:12805229 MGI:MGI:2664413 NCBI chr17:9,840,859...9,955,391
Ensembl chr17:9,844,133...9,952,898
JBrowse link
G Plpp3 phospholipid phosphatase 3 ISO
IEA
MGI:MGI:2674217 (MGI:MGI:2669570|PMID:12925589)
GO_REF:0000107
RGD
Ensembl
PMID:12925589 GO_REF:0000107, MGI:MGI:2669570 NCBI chr 5:124,690,214...124,765,499
Ensembl chr 5:124,690,214...124,765,498
JBrowse link
G Rnf2 ring finger protein 2 ISO
IEA
MGI:MGI:2653961 (MGI:MGI:2652937|PMID:12589020)
GO_REF:0000107
RGD
Ensembl
PMID:12589020 GO_REF:0000107, MGI:MGI:2652937 NCBI chr13:68,829,714...68,859,920
Ensembl chr13:68,830,620...68,858,809
JBrowse link
G Smad4 SMAD family member 4 ISO
IEA
MGI:MGI:1857691|MGI:MGI:2656539|MGI:MGI:2668393 (MGI:MGI:3051711|PMID:15215210)
GO_REF:0000107
RGD
Ensembl
PMID:15215210 GO_REF:0000107, MGI:MGI:3051711 NCBI chr18:69,626,682...69,657,373
Ensembl chr18:69,627,757...69,671,199
JBrowse link
G Tenm4 teneurin transmembrane protein 4 ISO MGI:MGI:2449635 (MGI:MGI:3531238|PMID:15489520) RGD PMID:15489520 MGI:MGI:3531238 NCBI chr 1:161,183,858...161,885,094
Ensembl chr 1:161,401,527...161,880,923
JBrowse link
G Ugdh UDP-glucose 6-dehydrogenase IEA
ISO
ISS
GO_REF:0000107
MGI:MGI:2678264 (MGI:MGI:2675908|PMID:14505572), (MGI:MGI:3577662|PMID:15755804)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:14505572, PMID:15755804 GO_REF:0000024, GO_REF:0000107, MGI:MGI:2675908, MGI:MGI:3577662 NCBI chr14:44,479,614...44,502,845
Ensembl chr14:44,479,614...44,502,845
JBrowse link
G Zbtb17 zinc finger and BTB domain containing 17 ISO MGI:MGI:2679766 (MGI:MGI:2679173|PMID:14560010) RGD PMID:14560010 MGI:MGI:2679173 NCBI chr 5:159,993,799...160,014,899
Ensembl chr 5:159,993,799...160,014,895
JBrowse link
hemangioblast cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tal1 TAL bHLH transcription factor 1, erythroid differentiation factor ISO MGI:MGI:1857254 (MGI:MGI:3580923|PMID:15677567), (MGI:MGI:3807430|PMID:18550854), (MGI:MGI:3838687|PMID:19182774) RGD PMID:15677567, PMID:18550854, PMID:19182774 MGI:MGI:3580923, MGI:MGI:3807430, MGI:MGI:3838687 NCBI chr 5:133,864,401...133,878,604
Ensembl chr 5:133,864,798...133,878,830
JBrowse link
ingression involved in gastrulation with mouth forming second term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crb2 crumbs cell polarity complex component 2 ISO (MGI:MGI:5823085|PMID:27870829) RGD PMID:27870829 MGI:MGI:5823085 NCBI chr 3:22,037,812...22,061,247
Ensembl chr 3:22,038,357...22,058,871
JBrowse link
intermediate mesodermal cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:10021330)
Ensembl
UniProt
RGD
PMID:10021330 GO_REF:0000024, GO_REF:0000107 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
lateral mesodermal cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxf1 forkhead box F1 ISO MGI:MGI:1929432 (MGI:MGI:1928688|PMID:11124112) RGD PMID:11124112 MGI:MGI:1928688 NCBI chr19:53,012,306...53,016,100
Ensembl chr19:53,012,332...53,016,086
JBrowse link
mesoderm formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 IEA
ISO
GO_REF:0000107
MGI:MGI:1931734|MGI:MGI:3696672 (MGI:MGI:1345529|PMID:10479450), (MGI:MGI:3695845|PMID:17117439)
Ensembl
RGD
PMID:10479450, PMID:17117439 GO_REF:0000107, MGI:MGI:1345529, MGI:MGI:3695845 NCBI chr 3:44,432,476...44,539,680
Ensembl chr 3:44,432,471...44,522,930
JBrowse link
G Armc5 armadillo repeat containing 5 ISO
IEA
MGI:MGI:6157645 (MGI:MGI:5913685|PMID:28911199)
GO_REF:0000107
RGD
Ensembl
PMID:28911199 GO_REF:0000107, MGI:MGI:5913685 NCBI chr 1:199,655,069...199,662,419
Ensembl chr 1:199,655,660...199,662,427
JBrowse link
G Bmp4 bone morphogenetic protein 4 ISO (MGI:MGI:4415813|PMID:18462699), (MGI:MGI:70235|PMID:7799920) RGD PMID:7799920, PMID:18462699 MGI:MGI:4415813, MGI:MGI:70235 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Bmp7 bone morphogenetic protein 7 ISO MGI:MGI:2137520 (MGI:MGI:3578079|PMID:15843411) RGD PMID:15843411 MGI:MGI:3578079 NCBI chr 3:170,879,972...170,955,820
Ensembl chr 3:170,879,973...170,955,399
JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A ISO MGI:MGI:2158342 (MGI:MGI:3722226|PMID:17699604) RGD PMID:17699604 MGI:MGI:3722226 NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512
JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 ISO MGI:MGI:2158503 (MGI:MGI:1855789|PMID:10772805) RGD PMID:10772805 MGI:MGI:1855789 NCBI chr 9:66,568,074...66,683,019
Ensembl chr 9:66,568,074...66,676,494
JBrowse link
G Chrd chordin ISO
IEA
MGI:MGI:2157350 (MGI:MGI:2662951|PMID:12810603)
GO_REF:0000107
RGD
Ensembl
PMID:12810603 GO_REF:0000107, MGI:MGI:2662951 NCBI chr11:83,858,503...83,867,543
Ensembl chr11:83,858,503...83,867,203
JBrowse link
G Crb2 crumbs cell polarity complex component 2 ISS
ISO
GO_REF:0000024
(MGI:MGI:5296388|PMID:22072575), (MGI:MGI:5823085|PMID:27870829)
UniProt
RGD
PMID:22072575, PMID:27870829 GO_REF:0000024, MGI:MGI:5296388, MGI:MGI:5823085 NCBI chr 3:22,037,812...22,061,247
Ensembl chr 3:22,038,357...22,058,871
JBrowse link
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 ISO (MGI:MGI:4415813|PMID:18462699) RGD PMID:18462699 MGI:MGI:4415813 NCBI chr 1:248,952,896...248,956,579
Ensembl chr 1:248,895,738...248,898,607
JBrowse link
G Ecsit ECSIT signaling integrator ISO MGI:MGI:2683025 (MGI:MGI:2682456|PMID:14633973) RGD PMID:14633973 MGI:MGI:2682456 NCBI chr 8:23,085,598...23,099,064
Ensembl chr 8:23,085,590...23,099,042
JBrowse link
G Eomes eomesodermin ISO
IBA
MGI:MGI:2182814 (MGI:MGI:1354065|PMID:10716450)
PMID:21873635
RGD PMID:10716450, PMID:21873635 MGI:MGI:1354065, RGD:13792537 NCBI chr 8:127,144,367...127,152,618
Ensembl chr 8:127,144,903...127,151,493
JBrowse link
G Etv2 ETS variant transcription factor 2 ISO (MGI:MGI:4415813|PMID:18462699) RGD PMID:18462699 MGI:MGI:4415813 NCBI chr 1:89,091,239...89,094,570
Ensembl chr 1:89,091,239...89,094,530
JBrowse link
G Ext2 exostosin glycosyltransferase 2 ISO MGI:MGI:3608690 (MGI:MGI:3608483|PMID:16236767) RGD PMID:16236767 MGI:MGI:3608483 NCBI chr 3:82,602,784...82,734,557
Ensembl chr 3:82,602,785...82,734,533
JBrowse link
G Gpi glucose-6-phosphate isomerase ISO MGI:MGI:2177275 (MGI:MGI:84014|PMID:8922529) RGD PMID:8922529 MGI:MGI:84014 NCBI chr 1:90,063,411...90,091,287
Ensembl chr 1:90,063,411...90,091,287
JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 ISO MGI:MGI:2153824 (MGI:MGI:1197801|PMID:9500550) RGD PMID:9500550 MGI:MGI:1197801 NCBI chr10:43,250,729...43,253,296
Ensembl chr10:43,250,745...43,253,296
JBrowse link
G Inhba inhibin subunit beta A ISO (MGI:MGI:70235|PMID:7799920) RGD PMID:7799920 MGI:MGI:70235 NCBI chr17:51,894,869...51,919,998
Ensembl chr17:51,898,217...51,912,496
JBrowse link
G Macf1 microtubule-actin crosslinking factor 1 ISO MGI:MGI:3652899 (MGI:MGI:3640889|PMID:16815997) RGD PMID:16815997 MGI:MGI:3640889 NCBI chr 5:141,039,455...141,363,524
Ensembl chr 5:141,039,468...141,363,524
JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:141,532,390...141,533,908
Ensembl chr 1:141,532,390...141,533,908
JBrowse link
G Mesp2 mesoderm posterior bHLH transcription factor 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:141,550,633...141,553,239
Ensembl chr 1:141,550,633...141,553,230
JBrowse link
G Msgn1 mesogenin 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:36,876,165...36,876,805
Ensembl chr 6:36,876,165...36,876,805
JBrowse link
G Nf2 neurofibromin 2 ISO
IEA
MGI:MGI:1857941 (MGI:MGI:707944|PMID:9171370)
GO_REF:0000107
RGD
Ensembl
PMID:9171370 GO_REF:0000107, MGI:MGI:707944 NCBI chr14:84,996,905...85,088,547
Ensembl chr14:84,996,905...85,088,523
JBrowse link
G Nodal nodal growth differentiation factor ISO MGI:MGI:2158732 (MGI:MGI:2155575|PMID:11311163) RGD PMID:11311163 MGI:MGI:2155575 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096
JBrowse link
G Nog noggin ISO
IEA
(MGI:MGI:4415813|PMID:18462699)
GO_REF:0000107
RGD
Ensembl
PMID:18462699 GO_REF:0000107, MGI:MGI:4415813 NCBI chr10:76,811,759...76,813,386
Ensembl chr10:76,811,759...76,813,386
JBrowse link
G Nr4a3 nuclear receptor subfamily 4, group A, member 3 ISO MGI:MGI:3043761 (MGI:MGI:3042044|PMID:13129926) RGD PMID:13129926 MGI:MGI:3042044 NCBI chr 5:63,781,801...63,822,890
Ensembl chr 5:63,781,801...63,821,637
JBrowse link
G Pofut2 protein O-fucosyltransferase 2 ISO MGI:MGI:3604508|MGI:MGI:4127173 (MGI:MGI:4838381|PMID:20637190) RGD PMID:20637190 MGI:MGI:4838381 NCBI chr20:12,117,811...12,128,747
Ensembl chr20:12,117,811...12,128,747
JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha ISO
IEA
MGI:MGI:97592 (MGI:MGI:2183097|PMID:12004056)
GO_REF:0000107
RGD
Ensembl
PMID:12004056 GO_REF:0000107, MGI:MGI:2183097 NCBI chr19:25,095,089...25,118,869
Ensembl chr19:25,095,089...25,118,860
JBrowse link
G Prkar1a protein kinase cAMP-dependent type I regulatory subunit alpha ISO MGI:MGI:2183602 (MGI:MGI:2183097|PMID:12004056) RGD PMID:12004056 MGI:MGI:2183097 NCBI chr10:97,940,705...97,959,199
Ensembl chr10:97,940,705...97,957,336
JBrowse link
G Scx scleraxis bHLH transcription factor ISO (MGI:MGI:1343990|PMID:10477299) RGD PMID:10477299 MGI:MGI:1343990 NCBI chr 7:117,519,075...117,521,093
Ensembl chr 7:117,519,075...117,521,093
JBrowse link
G Smad2 SMAD family member 2 ISO
ISS
MGI:MGI:1857691 (MGI:MGI:3039049|PMID:15084457)
GO_REF:0000024
RGD
UniProt
PMID:15084457 GO_REF:0000024, MGI:MGI:3039049 NCBI chr18:72,550,107...72,612,078
Ensembl chr18:72,550,219...72,612,078
JBrowse link
G Smad3 SMAD family member 3 ISO MGI:MGI:1857696 (MGI:MGI:3039049|PMID:15084457) RGD PMID:15084457 MGI:MGI:3039049 NCBI chr 8:68,569,530...68,678,349
Ensembl chr 8:68,569,530...68,678,349
JBrowse link
G Snai1 snail family transcriptional repressor 1 ISO (MGI:MGI:2153695|PMID:11689706) RGD PMID:11689706 MGI:MGI:2153695 NCBI chr 3:164,274,710...164,279,199
Ensembl chr 3:164,274,710...164,279,378
JBrowse link
G Srf serum response factor ISO MGI:MGI:2158696 (MGI:MGI:1312998|PMID:9799237), (MGI:MGI:1927031|PMID:11060034) RGD PMID:9799237, PMID:11060034 MGI:MGI:1312998, MGI:MGI:1927031 NCBI chr 9:16,737,637...16,747,226
Ensembl chr 9:16,737,642...16,747,225
JBrowse link
G Tbx19 T-box transcription factor 19 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:83,403,263...83,426,305
Ensembl chr13:83,403,264...83,425,641
JBrowse link
G Tbx6 T-box transcription factor 6 ISO MGI:MGI:2447721|MGI:MGI:3578143 (MGI:MGI:2447720|PMID:9490412), (MGI:MGI:3577662|PMID:15755804) RGD PMID:9490412, PMID:15755804 MGI:MGI:2447720, MGI:MGI:3577662 NCBI chr 1:198,214,797...198,218,706
Ensembl chr 1:198,214,797...198,218,706
JBrowse link
G Tbxt T-box transcription factor T IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:52,887,067...52,900,691
Ensembl chr 1:52,887,067...52,894,832
JBrowse link
G Tlx2 T-cell leukemia homeobox 2 ISO MGI:MGI:1857514 (MGI:MGI:1267265|PMID:9550720) RGD PMID:9550720 MGI:MGI:1267265 NCBI chr 4:114,766,401...114,768,243
Ensembl chr 4:114,766,714...114,768,029
Ensembl chr 4:114,766,714...114,768,029
JBrowse link
G Twsg1 twisted gastrulation BMP signaling modulator 1 ISO MGI:MGI:103302 (MGI:MGI:3578079|PMID:15843411) RGD PMID:15843411 MGI:MGI:3578079 NCBI chr 9:113,699,151...113,732,601
Ensembl chr 9:113,699,170...113,732,622
JBrowse link
G Txnrd1 thioredoxin reductase 1 ISO
IEA
MGI:MGI:3722092 (MGI:MGI:3721365|PMID:17697936)
GO_REF:0000107
RGD
Ensembl
PMID:17697936 GO_REF:0000107, MGI:MGI:3721365 NCBI chr 7:26,946,124...26,984,400
Ensembl chr 7:26,946,125...26,984,400
JBrowse link
G Wls Wnt ligand secretion mediator ISO (MGI:MGI:4397730|PMID:19841259) RGD PMID:19841259 MGI:MGI:4397730 NCBI chr 2:266,315,036...266,431,220
Ensembl chr 2:266,315,036...266,432,558
JBrowse link
G Wnt3 Wnt family member 3 ISO MGI:MGI:2178826 (MGI:MGI:1341483|PMID:10431240) RGD PMID:10431240 MGI:MGI:1341483 NCBI chr10:91,830,709...91,874,907
Ensembl chr10:91,830,654...91,874,793
JBrowse link
mesoderm migration involved in gastrulation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 ISO MGI:MGI:3822451 (MGI:MGI:3821807|PMID:18794329) RGD PMID:18794329 MGI:MGI:3821807 NCBI chr13:35,622,472...35,673,449
Ensembl chr13:35,580,098...35,668,968
JBrowse link
G LOC100912649 uncharacterized LOC100912649 ISS GO_REF:0000024 UniProt GO_REF:0000024
G Tbxt T-box transcription factor T ISO MGI:MGI:1857760 (MGI:MGI:71468|PMID:7720590) RGD PMID:7720590 MGI:MGI:71468 NCBI chr 1:52,887,067...52,900,691
Ensembl chr 1:52,887,067...52,894,832
JBrowse link
mesodermal cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 ISO (MGI:MGI:70235|PMID:7799920) RGD PMID:7799920 MGI:MGI:70235 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 IEP RGD PMID:7803853 RGD:632663 NCBI chr 1:200,590,951...200,696,946
Ensembl chr 1:200,590,953...200,696,928
JBrowse link
G Hmga2 high mobility group AT-hook 2 ISO
ISS
(PMID:17624332)
GO_REF:0000024
RGD
UniProt
PMID:17624332 GO_REF:0000024 NCBI chr 7:65,159,944...65,275,408
Ensembl chr 7:65,159,944...65,275,408
JBrowse link
G Inhba inhibin subunit beta A ISO (MGI:MGI:70235|PMID:7799920) RGD PMID:7799920 MGI:MGI:70235 NCBI chr17:51,894,869...51,919,998
Ensembl chr17:51,898,217...51,912,496
JBrowse link
G Itga2 integrin subunit alpha 2 ISO (PMID:23154389) RGD PMID:23154389 NCBI chr 2:46,996,904...47,097,011
Ensembl chr 2:47,000,323...47,096,961
JBrowse link
G Itga3 integrin subunit alpha 3 ISO (PMID:23154389) RGD PMID:23154389 NCBI chr10:82,855,841...82,887,755
Ensembl chr10:82,855,613...82,887,497
JBrowse link
G Itga8 integrin subunit alpha 8 ISO (PMID:23154389) RGD PMID:23154389 NCBI chr17:79,321,893...79,676,927
Ensembl chr17:79,321,900...79,676,499
JBrowse link
G Itgb1 integrin subunit beta 1 IEA
ISO
GO_REF:0000107
(PMID:23154389)
Ensembl
RGD
PMID:23154389 GO_REF:0000107 NCBI chr19:61,677,512...61,725,537
Ensembl chr19:61,677,542...61,725,535
JBrowse link
G Itgb3 integrin subunit beta 3 ISO (PMID:23154389) RGD PMID:23154389 NCBI chr10:92,667,869...92,783,413
Ensembl chr10:92,667,869...92,783,410
JBrowse link
G Itgb4 integrin subunit beta 4 IEA
ISO
GO_REF:0000107
(PMID:23154389)
Ensembl
RGD
PMID:23154389 GO_REF:0000107 NCBI chr10:104,524,000...104,560,180
Ensembl chr10:104,523,996...104,561,078
JBrowse link
G Kdm6a lysine demethylase 6A ISO MGI:MGI:5448754|MGI:MGI:5448825 (MGI:MGI:5448135|PMID:22949634) RGD PMID:22949634 MGI:MGI:5448135 NCBI chr  X:4,805,493...4,945,788
Ensembl chr  X:4,806,277...4,945,944
JBrowse link
G Kdm6b lysine demethylase 6B ISO (MGI:MGI:5574281|PMID:23856522) RGD PMID:23856522 MGI:MGI:5574281 NCBI chr10:56,000,494...56,009,582
Ensembl chr10:56,001,799...56,008,885
JBrowse link
mesodermal cell fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nanog Nanog homeobox ISO MGI:MGI:109452 (MGI:MGI:3654744|PMID:16801560) RGD PMID:16801560 MGI:MGI:3654744 NCBI chr 4:155,531,906...155,539,268
Ensembl chr 4:155,531,906...155,539,268
JBrowse link
G Pou5f1 POU class 5 homeobox 1 ISO (MGI:MGI:1355046|PMID:10742100) RGD PMID:10742100 MGI:MGI:1355046 NCBI chr20:3,747,231...3,751,994
Ensembl chr20:3,747,221...3,751,994
JBrowse link
G Smad1 SMAD family member 1 ISO
IEA
MGI:MGI:1919200 (MGI:MGI:3654744|PMID:16801560)
GO_REF:0000107
RGD
Ensembl
PMID:16801560 GO_REF:0000107, MGI:MGI:3654744 NCBI chr19:32,182,942...32,248,694
Ensembl chr19:32,188,267...32,248,684
JBrowse link
mesodermal cell fate determination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 ISO
IEA
MGI:MGI:1857137 (MGI:MGI:76261|PMID:7657163)
GO_REF:0000107
RGD
Ensembl
PMID:7657163 GO_REF:0000107, MGI:MGI:76261 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
mesodermal cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eya1 EYA transcriptional coactivator and phosphatase 1 ISO
IEA
(MGI:MGI:3768605|PMID:17785448)
GO_REF:0000107
RGD
Ensembl
PMID:17785448 GO_REF:0000107, MGI:MGI:3768605 NCBI chr 5:4,275,728...4,495,525
Ensembl chr 5:4,373,626...4,513,142
JBrowse link
G Hoxa11 homeobox A11 ISO (MGI:MGI:3768605|PMID:17785448) RGD PMID:17785448 MGI:MGI:3768605 NCBI chr 4:82,296,888...82,301,419
Ensembl chr 4:82,298,152...82,300,503
Ensembl chr 4:82,298,152...82,300,503
JBrowse link
G Pax2 paired box 2 ISO
ISS
(MGI:MGI:3768605|PMID:17785448)
GO_REF:0000024
RGD
UniProt
PMID:17785448 GO_REF:0000024, MGI:MGI:3768605 NCBI chr 1:264,493,579...264,585,073
Ensembl chr 1:264,504,591...264,583,329
JBrowse link
G Six2 SIX homeobox 2 ISO (MGI:MGI:3768605|PMID:17785448) RGD PMID:17785448 MGI:MGI:3768605 NCBI chr 6:8,952,572...8,955,893
Ensembl chr 6:8,952,572...8,956,276
JBrowse link
mesodermal to mesenchymal transition involved in gastrulation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eomes eomesodermin ISO
IEA
(MGI:MGI:3772748|PMID:18171685)
GO_REF:0000107
RGD
Ensembl
PMID:18171685 GO_REF:0000107, MGI:MGI:3772748 NCBI chr 8:127,144,367...127,152,618
Ensembl chr 8:127,144,903...127,151,493
JBrowse link
G Tasor transcription activation suppressor IEA
ISO
GO_REF:0000107
(MGI:MGI:6109647|PMID:28839193)
Ensembl
RGD
PMID:28839193 GO_REF:0000107, MGI:MGI:6109647 NCBI chr16:3,050,506...3,108,168
Ensembl chr16:3,051,449...3,105,531
JBrowse link
G Wnt5a Wnt family member 5A ISO
IEA
MGI:MGI:101948 (MGI:MGI:5634837|PMID:25813538)
GO_REF:0000107
RGD
Ensembl
PMID:25813538 GO_REF:0000107, MGI:MGI:5634837 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
JBrowse link
negative regulation of ectodermal cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fzd7 frizzled class receptor 7 ISO (PMID:18681827) RGD PMID:18681827 NCBI chr 9:66,305,731...66,308,550
Ensembl chr 9:66,305,731...66,308,550
JBrowse link
negative regulation of endodermal cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col5a1 collagen type V alpha 1 chain IEA
ISO
GO_REF:0000107
(PMID:23154389)
Ensembl
RGD
PMID:23154389 GO_REF:0000107 NCBI chr 3:6,430,180...6,581,010
Ensembl chr 3:6,430,201...6,578,882
JBrowse link
G Col5a2 collagen type V alpha 2 chain ISO (PMID:23154389) RGD PMID:23154389 NCBI chr 9:52,091,088...52,238,735
Ensembl chr 9:52,092,511...52,238,564
JBrowse link
negative regulation of endodermal cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mesp1 mesoderm posterior bHLH transcription factor 1 ISO (MGI:MGI:4441249|PMID:18593560) RGD PMID:18593560 MGI:MGI:4441249 NCBI chr 1:141,532,390...141,533,908
Ensembl chr 1:141,532,390...141,533,908
JBrowse link
negative regulation of heterotypic cell-cell adhesion term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adipoq adiponectin, C1Q and collagen domain containing ISO
ISS
(PMID:10604883)
GO_REF:0000024
RGD
UniProt
PMID:10604883 GO_REF:0000024 NCBI chr11:81,330,845...81,344,488
Ensembl chr11:81,330,293...81,344,488
JBrowse link
G Apoa1 apolipoprotein A1 ISO (PMID:21571275) RGD PMID:21571275 NCBI chr 8:50,525,091...50,526,875
Ensembl chr 8:50,525,091...50,526,875
JBrowse link
G Il10 interleukin 10 ISO UniProtKB:P06804 (MGI:MGI:5796069|PMID:26808574) RGD PMID:26808574 MGI:MGI:5796069 NCBI chr13:47,738,933...47,743,392
Ensembl chr13:47,739,526...47,743,392
JBrowse link
G Il1rn interleukin 1 receptor antagonist ISO
IEA
(PMID:2139180)
GO_REF:0000107
RGD
Ensembl
PMID:2139180 GO_REF:0000107 NCBI chr 3:1,449,778...1,468,624
Ensembl chr 3:1,452,644...1,468,614
JBrowse link
G Klf4 Kruppel like factor 4 ISO (PMID:20551324) RGD PMID:20551324 NCBI chr 5:72,283,311...72,287,669
Ensembl chr 5:72,283,313...72,287,669
JBrowse link
G LOC100912321 myeloid-associated differentiation marker-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:34,795,657...34,797,769
Ensembl chr16:34,795,971...34,796,921
JBrowse link
G Map2k5 mitogen activated protein kinase kinase 5 IMP PMID:20551324 BHF-UCL PMID:20551324 RGD:8553940 NCBI chr 8:68,055,976...68,282,656
Ensembl chr 8:68,055,972...68,282,590
JBrowse link
G Mapk7 mitogen-activated protein kinase 7 ISO UniProtKB:Q62862 (PMID:20551324) RGD PMID:20551324 NCBI chr10:47,768,592...47,775,130
Ensembl chr10:47,766,680...47,775,055
JBrowse link
G Mbp myelin basic protein IEA
ISO
GO_REF:0000107
(PMID:22524708)
Ensembl
RGD
PMID:22524708 GO_REF:0000107 NCBI chr18:79,326,738...79,437,310
Ensembl chr18:79,326,738...79,437,310
JBrowse link
G Myadm myeloid-associated differentiation marker ISO
IBA
(PMID:23264465)
PMID:21873635
RGD PMID:23264465, PMID:21873635 RGD:13792537 NCBI chr 1:64,438,465...64,448,332
Ensembl chr 1:64,438,472...64,446,818
JBrowse link
G Wnk1 WNK lysine deficient protein kinase 1 ISO (PMID:27400149) RGD PMID:27400149 NCBI chr 4:152,452,211...152,578,469
Ensembl chr 4:152,452,848...152,578,446
JBrowse link
negative regulation of mesodermal cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 ISO (PMID:20559569) RGD PMID:20559569 NCBI chr 1:248,952,896...248,956,579
Ensembl chr 1:248,895,738...248,898,607
JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 ISO (MGI:MGI:4441249|PMID:18593560) RGD PMID:18593560 MGI:MGI:4441249 NCBI chr 1:141,532,390...141,533,908
Ensembl chr 1:141,532,390...141,533,908
JBrowse link
G Sfrp2 secreted frizzled-related protein 2 ISO MGI:MGI:98956 (MGI:MGI:3711603|PMID:17462603) RGD PMID:17462603 MGI:MGI:3711603 NCBI chr 2:182,723,732...182,731,277
Ensembl chr 2:182,723,854...182,731,764
JBrowse link
paraxial mesoderm formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exoc4 exocyst complex component 4 ISO
IEA
MGI:MGI:4975171 (MGI:MGI:1195048|PMID:9441674)
GO_REF:0000107
RGD
Ensembl
PMID:9441674 GO_REF:0000107, MGI:MGI:1195048 NCBI chr 4:60,549,128...61,358,305
Ensembl chr 4:60,549,197...61,355,994
JBrowse link
G Foxc1 forkhead box C1 ISO MGI:MGI:1347481 (MGI:MGI:2150572|PMID:11562355), (MGI:MGI:3047050|PMID:15196959) RGD PMID:11562355, PMID:15196959 MGI:MGI:2150572, MGI:MGI:3047050 NCBI chr17:33,947,501...33,951,484
Ensembl chr17:33,947,506...33,951,484
JBrowse link
G Foxc2 forkhead box C2 ISO MGI:MGI:1347466 (MGI:MGI:2150572|PMID:11562355) RGD PMID:11562355 MGI:MGI:2150572 NCBI chr19:53,044,379...53,047,081
Ensembl chr19:53,044,379...53,047,081
JBrowse link
G Hnf1a HNF1 homeobox A ISO MGI:MGI:96770 (MGI:MGI:1334099|PMID:10090727) RGD PMID:10090727 MGI:MGI:1334099 NCBI chr12:47,407,811...47,433,342
Ensembl chr12:47,407,811...47,433,342
JBrowse link
G Htt huntingtin ISO MGI:MGI:1857180 (MGI:MGI:3609520|PMID:16109169) RGD PMID:16109169 MGI:MGI:3609520 NCBI chr14:81,105,139...81,254,637
Ensembl chr14:81,105,139...81,254,637
JBrowse link
G Lef1 lymphoid enhancer binding factor 1 ISO
IEA
MGI:MGI:98504 (MGI:MGI:1334099|PMID:10090727)
GO_REF:0000107
RGD
Ensembl
PMID:10090727 GO_REF:0000107, MGI:MGI:1334099 NCBI chr 2:236,232,115...236,345,061
Ensembl chr 2:236,233,239...236,345,056
JBrowse link
G Wnt11 Wnt family member 11 ISO MGI:MGI:98958 (MGI:MGI:5634837|PMID:25813538) RGD PMID:25813538 MGI:MGI:5634837 NCBI chr 1:163,794,136...163,813,756
Ensembl chr 1:163,797,660...163,813,756
JBrowse link
G Wnt5a Wnt family member 5A ISO
IEA
MGI:MGI:101948 (MGI:MGI:5634837|PMID:25813538)
GO_REF:0000107
RGD
Ensembl
PMID:25813538 GO_REF:0000107, MGI:MGI:5634837 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
JBrowse link
paraxial mesodermal cell fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxc2 forkhead box C2 ISO MGI:MGI:1857865 (MGI:MGI:86990|PMID:9106663) RGD PMID:9106663 MGI:MGI:86990 NCBI chr19:53,044,379...53,047,081
Ensembl chr19:53,044,379...53,047,081
JBrowse link
G Wnt3a Wnt family member 3A ISO MGI:MGI:1857489 (MGI:MGI:86727|PMID:9126297) RGD PMID:9126297 MGI:MGI:86727 NCBI chr10:45,598,898...45,643,151
Ensembl chr10:45,598,912...45,638,035
JBrowse link
planar cell polarity pathway involved in gastrula mediolateral intercalation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt11 Wnt family member 11 ISO MGI:MGI:98958 (MGI:MGI:5634837|PMID:25813538) RGD PMID:25813538 MGI:MGI:5634837 NCBI chr 1:163,794,136...163,813,756
Ensembl chr 1:163,797,660...163,813,756
JBrowse link
G Wnt5a Wnt family member 5A ISO
IEA
MGI:MGI:101948 (MGI:MGI:5634837|PMID:25813538)
GO_REF:0000107
RGD
Ensembl
PMID:25813538 GO_REF:0000107, MGI:MGI:5634837 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
JBrowse link
positive regulation of endodermal cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Macroh2a1 macroH2A.1 histone ISO (PMID:23595991) RGD PMID:23595991 NCBI chr17:9,282,109...9,344,698
Ensembl chr17:9,282,675...9,344,678
JBrowse link
positive regulation of gastrulation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxa2 forkhead box A2 ISO
ISS
(MGI:MGI:2157654|PMID:11291865)
GO_REF:0000024
RGD
UniProt
PMID:11291865 GO_REF:0000024, MGI:MGI:2157654 NCBI chr 3:142,383,084...142,387,493
Ensembl chr 3:142,383,278...142,387,481
JBrowse link
G Lhx1 LIM homeobox 1 ISO
ISS
(MGI:MGI:2157654|PMID:11291865)
GO_REF:0000024
RGD
UniProt
PMID:11291865 GO_REF:0000024, MGI:MGI:2157654 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293
JBrowse link
G Osr1 odd-skipped related transcription factor 1 ISO
ISS
(PMID:21281489)
GO_REF:0000024
RGD
UniProt
PMID:21281489 GO_REF:0000024 NCBI chr 6:35,314,431...35,321,458
Ensembl chr 6:35,314,444...35,321,667
JBrowse link
G Osr2 odd-skipped related transciption factor 2 ISO (MGI:MGI:5009762|PMID:21281489) RGD PMID:21281489 MGI:MGI:5009762 NCBI chr 7:74,047,820...74,055,096
Ensembl chr 7:74,047,814...74,055,256
JBrowse link
G Otx2 orthodenticle homeobox 2 ISO (MGI:MGI:2157654|PMID:11291865) RGD PMID:11291865 MGI:MGI:2157654 NCBI chr15:25,500,037...25,511,619
Ensembl chr15:25,502,019...25,505,691
JBrowse link
G Rack1 receptor for activated C kinase 1 ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr10:34,149,717...34,155,198
Ensembl chr10:34,149,717...34,155,198
Ensembl chr12:34,149,717...34,155,198
JBrowse link
G Scx scleraxis bHLH transcription factor ISO (MGI:MGI:1343990|PMID:10477299) RGD PMID:10477299 MGI:MGI:1343990 NCBI chr 7:117,519,075...117,521,093
Ensembl chr 7:117,519,075...117,521,093
JBrowse link
G Tenm4 teneurin transmembrane protein 4 ISO (MGI:MGI:3531238|PMID:15489520) RGD PMID:15489520 MGI:MGI:3531238 NCBI chr 1:161,183,858...161,885,094
Ensembl chr 1:161,401,527...161,880,923
JBrowse link
positive regulation of mesodermal cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gja1 gap junction protein, alpha 1 ISO (PMID:30599359) RGD PMID:30599359 NCBI chr20:37,876,650...37,889,097
Ensembl chr20:37,876,650...37,889,089
JBrowse link
positive regulation of mesodermal cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt3a Wnt family member 3A ISO (PMID:20559569) RGD PMID:20559569 NCBI chr10:45,598,898...45,643,151
Ensembl chr10:45,598,912...45,638,035
JBrowse link
primitive streak formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ets2 ETS proto-oncogene 2, transcription factor ISO MGI:MGI:1891557 (MGI:MGI:5546318|PMID:23552073) RGD PMID:23552073 MGI:MGI:5546318 NCBI chr11:36,075,709...36,092,495
Ensembl chr11:36,075,709...36,092,495
JBrowse link
G Foxa2 forkhead box A2 ISO
ISS
MGI:MGI:1857725 (MGI:MGI:2157654|PMID:11291865)
GO_REF:0000024
RGD
UniProt
PMID:11291865 GO_REF:0000024, MGI:MGI:2157654 NCBI chr 3:142,383,084...142,387,493
Ensembl chr 3:142,383,278...142,387,481
JBrowse link
G Gdf3 growth differentiation factor 3 ISO MGI:MGI:3612535 (MGI:MGI:3611720|PMID:16368929) RGD PMID:16368929 MGI:MGI:3611720 NCBI chr 4:155,417,667...155,422,014
Ensembl chr 4:155,417,004...155,421,998
JBrowse link
G Hhex hematopoietically expressed homeobox ISO MGI:MGI:4999724|MGI:MGI:97359 (MGI:MGI:4950786|PMID:21445260) RGD PMID:21445260 MGI:MGI:4950786 NCBI chr 1:256,101,994...256,107,581
Ensembl chr 1:256,101,903...256,107,649
JBrowse link
G Lhx1 LIM homeobox 1 ISO
ISS
MGI:MGI:1857502|MGI:MGI:1857848 (MGI:MGI:2157654|PMID:11291865)
GO_REF:0000024
RGD
UniProt
PMID:11291865 GO_REF:0000024, MGI:MGI:2157654 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293
JBrowse link
G Lrp6 LDL receptor related protein 6 ISO
IBA
MGI:MGI:98958 (MGI:MGI:4413372|PMID:19795512)
PMID:21873635
RGD PMID:19795512, PMID:21873635 MGI:MGI:4413372, RGD:13792537 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
G Nodal nodal growth differentiation factor ISO MGI:MGI:96086 (MGI:MGI:4950786|PMID:21445260) RGD PMID:21445260 MGI:MGI:4950786 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096
JBrowse link
G Otx2 orthodenticle homeobox 2 ISO MGI:MGI:1857502 (MGI:MGI:2157654|PMID:11291865) RGD PMID:11291865 MGI:MGI:2157654 NCBI chr15:25,500,037...25,511,619
Ensembl chr15:25,502,019...25,505,691
JBrowse link
G Srf serum response factor ISO MGI:MGI:2158696 (MGI:MGI:1312998|PMID:9799237) RGD PMID:9799237 MGI:MGI:1312998 NCBI chr 9:16,737,637...16,747,226
Ensembl chr 9:16,737,642...16,747,225
JBrowse link
G Wnt5a Wnt family member 5A ISO
IEA
MGI:MGI:1298218 (MGI:MGI:4413372|PMID:19795512)
GO_REF:0000107
RGD
Ensembl
PMID:19795512 GO_REF:0000107, MGI:MGI:4413372 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
JBrowse link
regulation of endodermal cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 ISO (PMID:20559569) RGD PMID:20559569 NCBI chr 1:248,952,896...248,956,579
Ensembl chr 1:248,895,738...248,898,607
JBrowse link
regulation of gastrulation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clasp1 cytoplasmic linker associated protein 1 ISO (PMID:23940118) RGD PMID:23940118 NCBI chr13:34,365,038...34,584,651
Ensembl chr13:34,365,147...34,584,651
JBrowse link
G Clasp2 cytoplasmic linker associated protein 2 ISO
IEA
(PMID:23940118)
GO_REF:0000107
RGD
Ensembl
PMID:23940118 GO_REF:0000107 NCBI chr 8:122,003,719...122,185,495
Ensembl chr 8:122,003,916...122,185,495
JBrowse link
G Crb2 crumbs cell polarity complex component 2 ISO (MGI:MGI:5700252|PMID:26496195) RGD PMID:26496195 MGI:MGI:5700252 NCBI chr 3:22,037,812...22,061,247
Ensembl chr 3:22,038,357...22,058,871
JBrowse link
G Dag1 dystroglycan 1 ISO (PMID:23940118) RGD PMID:23940118 NCBI chr 8:116,980,501...116,993,182
Ensembl chr 8:116,980,497...116,993,193
JBrowse link
G Hnf4a hepatocyte nuclear factor 4, alpha ISO
IEA
MGI:MGI:2158682 (MGI:MGI:69170|PMID:7958910)
GO_REF:0000107
RGD
Ensembl
PMID:7958910 GO_REF:0000107, MGI:MGI:69170 NCBI chr 3:159,902,441...159,965,003
Ensembl chr 3:159,902,441...159,965,003
JBrowse link
G Nodal nodal growth differentiation factor ISO MGI:MGI:1194497|MGI:MGI:1915299 (MGI:MGI:4430444|PMID:20040491) RGD PMID:20040491 MGI:MGI:4430444 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096
JBrowse link
G Phldb1 pleckstrin homology-like domain, family B, member 1 IEA
ISO
GO_REF:0000107
(PMID:23940118)
Ensembl
RGD
PMID:23940118 GO_REF:0000107 NCBI chr 8:48,997,189...49,045,176
Ensembl chr 8:48,997,184...49,045,154
JBrowse link
G Phldb2 pleckstrin homology-like domain, family B, member 2 ISO
IEA
(PMID:23940118)
GO_REF:0000107
RGD
Ensembl
PMID:23940118 GO_REF:0000107 NCBI chr11:60,042,879...60,051,229
Ensembl chr11:57,265,732...57,481,589
JBrowse link
G Poglut1 protein O-glucosyltransferase 1 ISO
IEA
ISS
(MGI:MGI:5700252|PMID:26496195)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:26496195 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5700252 NCBI chr11:64,761,493...64,788,210
Ensembl chr11:64,761,146...64,788,208
JBrowse link
G Tgif1 TGFB-induced factor homeobox 1 ISO MGI:MGI:1915299|MGI:MGI:97359 (MGI:MGI:4430444|PMID:20040491) RGD PMID:20040491 MGI:MGI:4430444 NCBI chr 9:119,181,079...119,190,698
Ensembl chr 9:119,181,083...119,190,698
JBrowse link
G Tgif2 TGFB-induced factor homeobox 2 ISO MGI:MGI:1194497|MGI:MGI:97359 (MGI:MGI:4430444|PMID:20040491) RGD PMID:20040491 MGI:MGI:4430444 NCBI chr 3:152,906,961...152,924,380
Ensembl chr 3:152,909,189...152,924,377
JBrowse link
regulation of lateral mesodermal cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor type 1A ISO MGI:MGI:95522 (MGI:MGI:3702797|PMID:16943278) RGD PMID:16943278 MGI:MGI:3702797 NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512
JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 ISO
IEA
MGI:MGI:1338938 (MGI:MGI:3702797|PMID:16943278)
GO_REF:0000107
RGD
Ensembl
PMID:16943278 GO_REF:0000107, MGI:MGI:3702797 NCBI chr16:71,265,390...71,319,046
Ensembl chr16:71,266,248...71,319,449
JBrowse link
regulation of transcription from RNA polymerase II promoter involved in definitive endodermal cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sox17 SRY-box transcription factor 17 ISO (MGI:MGI:4946573|PMID:21305474) RGD PMID:21305474 MGI:MGI:4946573 NCBI chr 5:14,890,318...14,895,907
Ensembl chr 5:14,890,408...14,895,907
JBrowse link
transforming growth factor beta receptor signaling pathway involved in primitive streak formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nodal nodal growth differentiation factor ISO (MGI:MGI:2677178|PMID:14511481) RGD PMID:14511481 MGI:MGI:2677178 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    developmental process 6812
      anatomical structure morphogenesis 2872
        embryonic morphogenesis 689
          gastrulation 208
            cell migration involved in gastrulation + 19
            cell-cell adhesion involved in gastrulation + 12
            convergent extension involved in gastrulation + 7
            epithelial cell morphogenesis involved in gastrulation + 0
            formation of primary germ layer + 128
            gastrulation with mouth forming first + 0
            gastrulation with mouth forming second + 39
            mesendoderm migration + 1
            mesodermal to mesenchymal transition involved in gastrulation + 3
            negative regulation of gastrulation + 6
            positive regulation of gastrulation + 11
            regulation of gastrulation + 41
Path 2
Term Annotations click to browse term
  biological_process 20014
    developmental process 6812
      anatomical structure development 6256
        multicellular organism development 5735
          embryo development 1303
            embryonic morphogenesis 689
              gastrulation 208
                cell migration involved in gastrulation + 19
                cell-cell adhesion involved in gastrulation + 12
                convergent extension involved in gastrulation + 7
                epithelial cell morphogenesis involved in gastrulation + 0
                formation of primary germ layer + 128
                gastrulation with mouth forming first + 0
                gastrulation with mouth forming second + 39
                mesendoderm migration + 1
                mesodermal to mesenchymal transition involved in gastrulation + 3
                negative regulation of gastrulation + 6
                positive regulation of gastrulation + 11
                regulation of gastrulation + 41
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.