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ONTOLOGY REPORT - ANNOTATIONS


Term:segment specification
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Accession:GO:0007379 term browser browse the term
Definition:The process in which segments assume individual identities; exemplified in insects by the actions of the products of the homeotic genes.


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segment specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dvl2 dishevelled segment polarity protein 2 ISO MGI:MGI:2429760 (MGI:MGI:2389015|PMID:12421720) RGD PMID:12421720 MGI:MGI:2389015 NCBI chr10:56,609,810...56,619,269
Ensembl chr10:56,610,051...56,619,269
JBrowse link
G Hoxa2 homeobox A2 ISO MGI:MGI:1857626 (MGI:MGI:1098901|PMID:9367425) RGD PMID:9367425 MGI:MGI:1098901 NCBI chr 4:82,130,441...82,134,846
Ensembl chr 4:82,131,329...82,133,605
JBrowse link
G Mafb MAF bZIP transcription factor B ISO MGI:MGI:2157803 (MGI:MGI:2660991|PMID:12701106) RGD PMID:12701106 MGI:MGI:2660991 NCBI chr 3:156,338,993...156,340,913
Ensembl chr 3:156,339,004...156,340,913
JBrowse link
G Mllt3 MLLT3, super elongation complex subunit ISO MGI:MGI:2388982 (MGI:MGI:2387913|PMID:12242306) RGD PMID:12242306 MGI:MGI:2387913 NCBI chr 5:106,103,498...106,202,559
Ensembl chr 5:106,103,407...106,207,126
JBrowse link
G Msgn1 mesogenin 1 ISO MGI:MGI:1933263 (MGI:MGI:1928575|PMID:11124811) RGD PMID:11124811 MGI:MGI:1928575 NCBI chr 6:36,876,165...36,876,805
Ensembl chr 6:36,876,165...36,876,805
JBrowse link
G Mtf2 metal response element binding transcription factor 2 ISO (MGI:MGI:4946172|PMID:21059868) RGD PMID:21059868 MGI:MGI:4946172 NCBI chr14:2,656,776...2,701,027
Ensembl chr14:2,658,267...2,700,977
JBrowse link
somite specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cobl cordon-bleu WH2 repeat protein ISO
IEA
(PMID:7586755)
GO_REF:0000107
RGD
Ensembl
PMID:7586755 GO_REF:0000107 NCBI chr14:92,341,949...92,497,169
Ensembl chr14:92,342,957...92,577,936
JBrowse link
G Dll1 delta like canonical Notch ligand 1 ISO
IEA
MGI:MGI:3038950 (MGI:MGI:3034157|PMID:14960495)
GO_REF:0000107
RGD
Ensembl
PMID:14960495 GO_REF:0000107, MGI:MGI:3034157 NCBI chr 1:57,318,621...57,326,732
Ensembl chr 1:57,318,708...57,327,379
JBrowse link
G Meox1 mesenchyme homeobox 1 ISO MGI:MGI:103219 (MGI:MGI:2669571|PMID:12925591) RGD PMID:12925591 MGI:MGI:2669571 NCBI chr10:89,797,011...89,817,009
Ensembl chr10:89,797,038...89,816,491
JBrowse link
G Meox2 mesenchyme homeobox 2 ISO
IEA
MGI:MGI:103220 (MGI:MGI:2669571|PMID:12925591)
GO_REF:0000107
RGD
Ensembl
PMID:12925591 GO_REF:0000107, MGI:MGI:2669571 NCBI chr 6:56,625,768...56,689,195
Ensembl chr 6:56,625,650...56,689,238
JBrowse link
specification of anterior mesonephric tubule identity term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 ISO
ISS
(MGI:MGI:3697513|PMID:16790474)
GO_REF:0000024
RGD
UniProt
PMID:16790474 GO_REF:0000024, MGI:MGI:3697513 NCBI chr 6:35,314,431...35,321,458
Ensembl chr 6:35,314,444...35,321,667
JBrowse link
specification of loop of Henle identity term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes5 hes family bHLH transcription factor 5 ISO (PMID:15821257) RGD PMID:15821257 NCBI chr 5:172,364,421...172,365,188
Ensembl chr 5:172,364,421...172,365,188
JBrowse link
G Irx1 iroquois homeobox 1 ISO (PMID:17875669) RGD PMID:17875669 NCBI chr 1:33,910,912...33,916,741
Ensembl chr 1:33,910,912...33,916,741
JBrowse link
G Irx2 iroquois homeobox 2 ISO (PMID:17875669) RGD PMID:17875669 NCBI chr 1:33,270,388...33,275,868
Ensembl chr 1:33,271,977...33,275,540
JBrowse link
G Irx3 iroquois homeobox 3 ISO (PMID:17875669) RGD PMID:17875669 NCBI chr19:15,838,714...15,842,135
Ensembl chr19:15,838,714...15,840,990
JBrowse link
specification of posterior mesonephric tubule identity term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 ISO
ISS
(MGI:MGI:3697513|PMID:16790474)
GO_REF:0000024
RGD
UniProt
PMID:16790474 GO_REF:0000024, MGI:MGI:3697513 NCBI chr 6:35,314,431...35,321,458
Ensembl chr 6:35,314,444...35,321,667
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    multicellular organismal process 9055
      pattern specification process 496
        segment specification 15
          somite specification 4
          specification of nephron tubule identity + 5
          specification of segmental identity, head + 0
          specification of segmental identity, trunk + 0
Path 2
Term Annotations click to browse term
  biological_process 20014
    developmental process 6812
      anatomical structure development 6256
        multicellular organism development 5735
          pattern specification process 496
            regionalization 392
              segmentation 108
                segment specification 15
                  somite specification 4
                  specification of nephron tubule identity + 5
                  specification of segmental identity, head + 0
                  specification of segmental identity, trunk + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.